Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942380 | KEH25398.1 | 67.368 | 95 | 31 | 0 | 7 | 101 | 495 | 589 | 9.91e-28 | 133 |
| Msa0942380 | KEH25398.1 | 69.194 | 211 | 59 | 2 | 256 | 462 | 16 | 224 | 7.82e-86 | 305 |
| Msa0942380 | KEH25398.1 | 88.757 | 845 | 43 | 3 | 19 | 827 | 144 | 972 | 0.0 | 1530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942380 | sp|Q8VYF9|SRGT1_ARATH | 76.577 | 444 | 103 | 1 | 19 | 462 | 157 | 599 | 0.0 | 750 |
| Msa0942380 | sp|Q8VYF9|SRGT1_ARATH | 67.943 | 209 | 65 | 1 | 256 | 462 | 29 | 237 | 2.93e-89 | 302 |
| Msa0942380 | sp|Q8VYF9|SRGT1_ARATH | 52.239 | 201 | 94 | 1 | 7 | 207 | 507 | 705 | 1.94e-60 | 223 |
| Msa0942380 | sp|Q8VYF9|SRGT1_ARATH | 42.248 | 258 | 112 | 7 | 573 | 815 | 566 | 801 | 2.81e-49 | 190 |
| Msa0942380 | sp|Q8VYF9|SRGT1_ARATH | 36.667 | 150 | 81 | 4 | 565 | 700 | 193 | 342 | 6.95e-18 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428210 | Msa0942380 | 0.800376 | 1.483676e-48 | -8.615850e-47 |
| Msa0306400 | Msa0942380 | 0.932680 | 5.922752e-95 | -8.615850e-47 |
| Msa0877160 | Msa0942380 | 0.902672 | 7.632030e-79 | -8.615850e-47 |
| Msa0942380 | Msa0942390 | 0.938079 | 1.215988e-98 | -8.615850e-47 |
| Msa0942380 | Msa1043110 | 0.938469 | 6.389961e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942380 | MtrunA17_Chr6g0458451 | 98.649 | 444 | 6 | 0 | 19 | 462 | 156 | 599 | 0.0 | 928 |
| Msa0942380 | MtrunA17_Chr6g0458451 | 87.452 | 263 | 25 | 1 | 573 | 827 | 566 | 828 | 3.65e-152 | 466 |
| Msa0942380 | MtrunA17_Chr6g0458451 | 69.194 | 211 | 59 | 2 | 256 | 462 | 28 | 236 | 4.63e-91 | 305 |
| Msa0942380 | MtrunA17_Chr6g0458451 | 53.030 | 198 | 90 | 2 | 7 | 204 | 507 | 701 | 8.26e-57 | 209 |
| Msa0942380 | MtrunA17_Chr6g0458451 | 39.623 | 106 | 61 | 2 | 598 | 700 | 236 | 341 | 2.77e-16 | 83.6 |
| Msa0942380 | MtrunA17_Chr7g0228921 | 81.306 | 444 | 82 | 1 | 19 | 462 | 157 | 599 | 0.0 | 788 |
| Msa0942380 | MtrunA17_Chr7g0228921 | 69.524 | 210 | 60 | 2 | 256 | 462 | 29 | 237 | 7.30e-92 | 306 |
| Msa0942380 | MtrunA17_Chr7g0228921 | 50.000 | 246 | 102 | 3 | 573 | 810 | 566 | 798 | 2.18e-68 | 242 |
| Msa0942380 | MtrunA17_Chr7g0228921 | 52.792 | 197 | 91 | 1 | 7 | 203 | 507 | 701 | 3.83e-58 | 213 |
| Msa0942380 | MtrunA17_Chr7g0228921 | 38.411 | 151 | 79 | 5 | 564 | 700 | 192 | 342 | 3.28e-21 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942380 | AT3G01720.1 | 76.577 | 444 | 103 | 1 | 19 | 462 | 157 | 599 | 0.0 | 750 |
| Msa0942380 | AT3G01720.1 | 67.943 | 209 | 65 | 1 | 256 | 462 | 29 | 237 | 2.98e-90 | 302 |
| Msa0942380 | AT3G01720.1 | 52.239 | 201 | 94 | 1 | 7 | 207 | 507 | 705 | 1.97e-61 | 223 |
| Msa0942380 | AT3G01720.1 | 42.248 | 258 | 112 | 7 | 573 | 815 | 566 | 801 | 2.86e-50 | 190 |
| Msa0942380 | AT3G01720.1 | 36.667 | 150 | 81 | 4 | 565 | 700 | 193 | 342 | 7.06e-19 | 92.4 |
Find 203 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGGTTGTGACAATATTT+TGG | 0.175665 | 6_3:-17044146 | Msa0942380:CDS |
| ATCCGGTGGGTCTGGGAATT+TGG | 0.179408 | 6_3:+17039499 | Msa0942370:intron |
| GTAGCAGGATTCACATATTT+TGG | 0.184669 | 6_3:+17043257 | Msa0942370:intron |
| TACCAAGTTCTTTCAGGTTT+TGG | 0.193793 | 6_3:-17039181 | Msa0942380:CDS |
| GGAGAAAACTGTATGGATTT+TGG | 0.197217 | 6_3:+17043169 | Msa0942370:intron |
| GAATTTCAAGTGCTTCATTT+AGG | 0.208159 | 6_3:+17039405 | Msa0942370:intron |
| AATTACCAATCTCCTGTTAA+TGG | 0.215038 | 6_3:+17042972 | Msa0942370:intron |
| CCATTAATCCGTTCTTAATA+TGG | 0.226424 | 6_3:+17040414 | Msa0942370:intron |
| ATGAGATACCAAGTTCTTTC+AGG | 0.238205 | 6_3:-17039187 | Msa0942380:CDS |
| TTGCATGCCAGCTACCTTAT+TGG | 0.244694 | 6_3:-17041764 | Msa0942380:intron |
| GCACATTATCTAACTGGTTT+TGG | 0.256581 | 6_3:-17040323 | Msa0942380:CDS |
| GCTGCAATGACGAGGATTTA+AGG | 0.256840 | 6_3:-17043052 | Msa0942380:CDS |
| CGACAAAGTTGGCGGGCTTT+TGG | 0.279044 | 6_3:-17044092 | Msa0942380:CDS |
| AACTCTTGATCAAGCTAATA+AGG | 0.288432 | 6_3:-17039471 | Msa0942380:CDS |
| GTTCAGAGAATGAGAAGGTT+AGG | 0.296198 | 6_3:-17044634 | Msa0942380:CDS |
| AACATAACTGGTGACATATA+CGG | 0.297840 | 6_3:-17043980 | Msa0942380:CDS |
| GCCATAGCATAGCAAATTTC+CGG | 0.300279 | 6_3:+17041651 | Msa0942370:intron |
| GACCAGTTCCCTACACTAAA+TGG | 0.303871 | 6_3:+17043692 | Msa0942370:intron |
| TTGATTGCACATTATCTAAC+TGG | 0.313472 | 6_3:-17040329 | Msa0942380:CDS |
| GTTGAGGGATCCGGTGGGTC+TGG | 0.314253 | 6_3:+17039491 | Msa0942370:intron |
| ACTTGGCGTACAAACCTCTT+TGG | 0.316515 | 6_3:+17043595 | Msa0942370:intron |
| AATTTCAAGTGCTTCATTTA+GGG | 0.316816 | 6_3:+17039406 | Msa0942370:intron |
| ATTGTGCAGTGGCTTGTTAC+TGG | 0.319356 | 6_3:-17040451 | Msa0942380:intron |
| AGTAACCTTGTAATATTTCC+AGG | 0.327180 | 6_3:+17043077 | Msa0942370:intron |
| CCATATTAAGAACGGATTAA+TGG | 0.329683 | 6_3:-17040414 | Msa0942380:CDS |
| TCTTTGGGATAAGGAGGTTC+TGG | 0.330835 | 6_3:+17043611 | Msa0942370:intron |
| TGAGATTCAGTGTTGGGAAT+TGG | 0.334660 | 6_3:-17039574 | Msa0942380:CDS |
| CTGCCAAGCAAGGATAGTTT+TGG | 0.336200 | 6_3:+17040178 | Msa0942370:intron |
| GGTTAAATCATTGCACTTAG+AGG | 0.351221 | 6_3:-17040360 | Msa0942380:CDS |
| GAGATGTATGGATACTCTTT+TGG | 0.352878 | 6_3:-17043941 | Msa0942380:CDS |
| GCAGCTGGTTTATTAATTGC+TGG | 0.357175 | 6_3:+17042275 | Msa0942370:intron |
| ACCTGGGCAGGGTTGCATTA+AGG | 0.361753 | 6_3:+17040595 | Msa0942370:intron |
| TGAGTTGTCTTTCATGCATC+AGG | 0.365058 | 6_3:-17040381 | Msa0942380:CDS |
| CTATATTTGACGTTCGGTTC+AGG | 0.370561 | 6_3:+17039614 | Msa0942370:intron |
| CTTGGCGTACAAACCTCTTT+GGG | 0.372919 | 6_3:+17043596 | Msa0942370:intron |
| GACAAACCATTCAGAGGAAT+TGG | 0.375531 | 6_3:-17039249 | Msa0942380:CDS |
| AGTATACTGCCCGGTTGGTT+TGG | 0.375724 | 6_3:-17040230 | Msa0942380:CDS |
| ACAGGAGACATATATGAATC+AGG | 0.384131 | 6_3:-17041575 | Msa0942380:CDS |
| TGAAACACGGCCAAACCAAC+CGG | 0.385689 | 6_3:+17040220 | Msa0942370:intron |
| AACCAGCTGCAGTTCTTCAT+TGG | 0.391693 | 6_3:-17042262 | Msa0942380:CDS |
| GAGATGTATGGTTACTCATT+TGG | 0.396357 | 6_3:-17041542 | Msa0942380:CDS |
| CCAACTTTGTCGCACAGCTC+TGG | 0.400653 | 6_3:+17044103 | Msa0942370:intron |
| AATGCACACCATACTTTGAT+TGG | 0.401211 | 6_3:-17043142 | Msa0942380:CDS |
| GTTCGTTGTCACAACCAATA+AGG | 0.401734 | 6_3:+17041750 | Msa0942370:intron |
| TCCTTGCTTGGCAGTTTATG+AGG | 0.401772 | 6_3:-17040169 | Msa0942380:intron |
| AAGCATGCAATCAGGATTCA+TGG | 0.403064 | 6_3:-17039045 | Msa0942380:CDS |
| ATGAGTCGACATCCATTAAC+AGG | 0.404518 | 6_3:-17042984 | Msa0942380:CDS |
| CACTTGCCAATTCCTCTGAA+TGG | 0.410444 | 6_3:+17039243 | Msa0942370:intron |
| ATGGATTGAGATTCAGTGTT+GGG | 0.410758 | 6_3:-17039580 | Msa0942380:CDS |
| TTCAGAGAATGAGAAGGTTA+GGG | 0.416100 | 6_3:-17044633 | Msa0942380:CDS |
| TTGAGGGATCCGGTGGGTCT+GGG | 0.419177 | 6_3:+17039492 | Msa0942370:intron |
| AAACCAACCGGGCAGTATAC+TGG | 0.421830 | 6_3:+17040232 | Msa0942370:intron |
| CACTGGGCGACAAACATAAC+TGG | 0.424302 | 6_3:-17043992 | Msa0942380:CDS |
| CACAAACCGGATGAAGATAA+TGG | 0.430139 | 6_3:+17040570 | Msa0942370:intron |
| AACATGATATCGCGACTAGA+AGG | 0.438296 | 6_3:+17040287 | Msa0942370:intron |
| CCAACTTTGTCGCAAGCCTC+TGG | 0.438300 | 6_3:+17041704 | Msa0942370:intron |
| TTGAATTCCCACGGTGTGAT+TGG | 0.438756 | 6_3:+17042173 | Msa0942370:intron |
| ACAGTTTGCCAATCAAAGTA+TGG | 0.439045 | 6_3:+17043134 | Msa0942370:intron |
| AAAACTCTATATTTGACGTT+CGG | 0.446196 | 6_3:+17039608 | Msa0942370:intron |
| TACTCGTAAGGAGTTGAAAC+AGG | 0.446505 | 6_3:+17042134 | Msa0942370:intron |
| GAATTGTTTATGAATGCAAC+CGG | 0.448605 | 6_3:-17043640 | Msa0942380:CDS |
| AGTGGAACTTCAAGGGAAAT+CGG | 0.451336 | 6_3:-17039314 | Msa0942380:CDS |
| CCCTCACGAGGGATATAACC+TGG | 0.452694 | 6_3:+17043746 | Msa0942370:intron |
| GAGGATTTAAGGAAGTATAA+AGG | 0.453713 | 6_3:-17043041 | Msa0942380:CDS |
| CCCTCGTGAGGGAATTGAAC+CGG | 0.454874 | 6_3:-17043735 | Msa0942380:CDS |
| AACCGGTTCTTCTTCACTAC+GGG | 0.454993 | 6_3:-17043718 | Msa0942380:CDS |
| AAGATAATGGACACCTGGGC+AGG | 0.458217 | 6_3:+17040583 | Msa0942370:intron |
| CATTATGCAAGAAATATAAC+AGG | 0.458713 | 6_3:-17041593 | Msa0942380:CDS |
| ACACCCGTTGATCGTGATGA+TGG | 0.458737 | 6_3:-17043203 | Msa0942380:CDS |
| TTAGCTTGATCAAGAGTTGA+GGG | 0.463459 | 6_3:+17039476 | Msa0942370:intron |
| AATGTGTAGGAGCCAGATCT+TGG | 0.463486 | 6_3:+17043018 | Msa0942370:intron |
| AGGTGTCCATTATCTTCATC+CGG | 0.463956 | 6_3:-17040576 | Msa0942380:intron |
| GAAGTATAAAGGCCAAGATC+TGG | 0.467544 | 6_3:-17043030 | Msa0942380:CDS |
| CAGAAGAAAGTGGAACTTCA+AGG | 0.468519 | 6_3:-17039322 | Msa0942380:CDS |
| ATCTCATCTTTCTGAACACT+TGG | 0.468861 | 6_3:+17039203 | Msa0942370:intron |
| AGCCCGTAGTGAAGAAGAAC+CGG | 0.470509 | 6_3:+17043716 | Msa0942370:intron |
| ACATAACTGGTGACATATAC+GGG | 0.471219 | 6_3:-17043979 | Msa0942380:CDS |
| GGATGAAACATCATAGTAGA+AGG | 0.471889 | 6_3:-17039073 | Msa0942380:CDS |
| TTTCTAAAACAGAAGAAGTA+CGG | 0.474428 | 6_3:-17044027 | Msa0942380:CDS |
| TTTATTGCAGGTATTACAGT+TGG | 0.474686 | 6_3:-17043444 | Msa0942380:intron |
| GGATGGATCAGTGAGATGTA+TGG | 0.475233 | 6_3:-17043953 | Msa0942380:CDS |
| AGGAGAAGAAGCATGCAATC+AGG | 0.477396 | 6_3:-17039053 | Msa0942380:CDS |
| TACCATTTAGTGTAGGGAAC+TGG | 0.477535 | 6_3:-17043694 | Msa0942380:CDS |
| GTACAAACCTCTTTGGGATA+AGG | 0.477585 | 6_3:+17043602 | Msa0942370:intron |
| TGCATAAACATTATAAATGA+AGG | 0.478681 | 6_3:-17043377 | Msa0942380:CDS |
| TTCTATCTCCATATTAAGAA+CGG | 0.484695 | 6_3:-17040422 | Msa0942380:CDS |
| TTGATGTGGTTAACAAATGT+TGG | 0.485720 | 6_3:-17039523 | Msa0942380:CDS |
| ACCCAAAACCTGAAAGAACT+TGG | 0.492062 | 6_3:+17039179 | Msa0942370:intron |
| TTTCCATCATCACGATCAAC+GGG | 0.493381 | 6_3:+17043200 | Msa0942370:intron |
| TTACTCATTTGGCGCGGCTG+AGG | 0.493499 | 6_3:-17041531 | Msa0942380:intron |
| AGCCAATGAAGAACTGCAGC+TGG | 0.495177 | 6_3:+17042260 | Msa0942370:intron |
| TTACCAAAACTATCCTTGCT+TGG | 0.495611 | 6_3:-17040181 | Msa0942380:CDS |
| GACATCCATTAACAGGAGAT+TGG | 0.499712 | 6_3:-17042977 | Msa0942380:intron |
| AGAAGAAGTACGGGAAGATA+AGG | 0.503586 | 6_3:-17044017 | Msa0942380:CDS |
| TTCCATATTGATATCAAAAG+AGG | 0.505001 | 6_3:-17039354 | Msa0942380:CDS |
| TTTCGTTTGAGTGGACAGCC+TGG | 0.507263 | 6_3:-17043095 | Msa0942380:CDS |
| AAACTCGCTCACCATGATGA+TGG | 0.507418 | 6_3:-17043662 | Msa0942380:CDS |
| GCCTTAATGCAACCCTGCCC+AGG | 0.514968 | 6_3:-17040596 | Msa0942380:CDS |
| GATGAGAAAACAGAAGAAAG+TGG | 0.515505 | 6_3:-17039332 | Msa0942380:CDS |
| TTCTAAAACAGAAGAAGTAC+GGG | 0.516719 | 6_3:-17044026 | Msa0942380:CDS |
| TTCGGTTCAGGAACATATCC+CGG | 0.517083 | 6_3:+17039626 | Msa0942370:intron |
| CCAGAGCTGTGCGACAAAGT+TGG | 0.519233 | 6_3:-17044103 | Msa0942380:CDS |
| TCCGGAAATTTGCTATGCTA+TGG | 0.523585 | 6_3:-17041652 | Msa0942380:CDS |
| TGATCAAGAGTTGAGGGATC+CGG | 0.525509 | 6_3:+17039482 | Msa0942370:intron |
| ATTTAGTTCAGAGAATGAGA+AGG | 0.528631 | 6_3:-17044639 | Msa0942380:CDS |
| CTTTCCATCATCACGATCAA+CGG | 0.532984 | 6_3:+17043199 | Msa0942370:intron |
| AGTCAGTAGGCTTACTCGTA+AGG | 0.533132 | 6_3:+17042122 | Msa0942370:intron |
| CAATGAGATACTGATATACC+CGG | 0.538068 | 6_3:-17039645 | Msa0942380:CDS |
| TAATAAATAGTCCTCGCCTT+CGG | 0.538311 | 6_3:+17043408 | Msa0942370:intron |
| GGCCAAATTCCCAGACCCAC+CGG | 0.542009 | 6_3:-17039501 | Msa0942380:CDS |
| GGAATTGGCAAGTGTTCAGA+AGG | 0.542493 | 6_3:-17039234 | Msa0942380:CDS |
| ATGGTTTGTCACGACACGAT+TGG | 0.543260 | 6_3:+17039262 | Msa0942370:intron |
| AGCTGTGCGACAAAGTTGGC+GGG | 0.543694 | 6_3:-17044099 | Msa0942380:CDS |
| TGATGTGGTTAACAAATGTT+GGG | 0.543907 | 6_3:-17039522 | Msa0942380:CDS |
| CATAAACAATTCCATCATCA+TGG | 0.544004 | 6_3:+17043651 | Msa0942370:intron |
| TACTGAATCAATACTTGCAT+CGG | 0.544833 | 6_3:+17039286 | Msa0942370:intron |
| CCAGAGGCTTGCGACAAAGT+TGG | 0.545670 | 6_3:-17041704 | Msa0942380:CDS |
| GAGCTGTGCGACAAAGTTGG+CGG | 0.546257 | 6_3:-17044100 | Msa0942380:CDS |
| CATGAAAGACAACTCAGAAT+CGG | 0.546746 | 6_3:+17040388 | Msa0942370:intron |
| TCGGTTCAGGAACATATCCC+GGG | 0.548133 | 6_3:+17039627 | Msa0942370:intron |
| AGAACCTCCTTATCCCAAAG+AGG | 0.550034 | 6_3:-17043609 | Msa0942380:intron |
| GGGTGGATCAGTGAGATGTA+TGG | 0.554822 | 6_3:-17041554 | Msa0942380:CDS |
| AGCAATGGACGCGACCGGCA+CGG | 0.562849 | 6_3:-17039020 | Msa0942380:CDS |
| TTATGCATATAGATGATCTC+CGG | 0.563181 | 6_3:-17041670 | Msa0942380:CDS |
| GGAGCTTCGACAAAGCAGAC+TGG | 0.563412 | 6_3:-17039553 | Msa0942380:CDS |
| TAGAGAGCTTCAAGTAGCGC+TGG | 0.564723 | 6_3:-17040648 | Msa0942380:CDS |
| GAAACACGGCCAAACCAACC+GGG | 0.564842 | 6_3:+17040221 | Msa0942370:intron |
| GTGACATATACGGGAAAGGA+TGG | 0.565093 | 6_3:-17043970 | Msa0942380:CDS |
| TGGAAAGCAATGGACGCGAC+CGG | 0.565743 | 6_3:-17039025 | Msa0942380:CDS |
| TGCAATGCCAGTATACTGCC+CGG | 0.566257 | 6_3:-17040239 | Msa0942380:CDS |
| CTACTACAGCATGGAGCGAA+TGG | 0.567967 | 6_3:-17043350 | Msa0942380:CDS |
| GAACCGGTTCTTCTTCACTA+CGG | 0.568198 | 6_3:-17043719 | Msa0942380:CDS |
| AGAAGGTTAGGGTTTCGAAA+AGG | 0.568304 | 6_3:-17044622 | Msa0942380:intron |
| AGAAGAAAGTGGAACTTCAA+GGG | 0.569929 | 6_3:-17039321 | Msa0942380:CDS |
| ATACTGGCATTGCAATATGA+AGG | 0.570695 | 6_3:+17040248 | Msa0942370:intron |
| TACTTTGATTGGCAAACTGT+AGG | 0.571418 | 6_3:-17043131 | Msa0942380:CDS |
| GGATGAAGATAATGGACACC+TGG | 0.572497 | 6_3:+17040578 | Msa0942370:intron |
| ACGGGCTACCATTTAGTGTA+GGG | 0.573227 | 6_3:-17043700 | Msa0942380:CDS |
| CAGGAGACATATATGAATCA+GGG | 0.573524 | 6_3:-17041574 | Msa0942380:CDS |
| CGAGAAGCTTTGAATTCCCA+CGG | 0.575191 | 6_3:+17042164 | Msa0942370:intron |
| ACCTCATAAACTGCCAAGCA+AGG | 0.576060 | 6_3:+17040168 | Msa0942370:intron |
| ATTAGCTTGATCAAGAGTTG+AGG | 0.583296 | 6_3:+17039475 | Msa0942370:intron |
| TATGGATTGAGATTCAGTGT+TGG | 0.586229 | 6_3:-17039581 | Msa0942380:CDS |
| TACGGGAAGATAAGGAACAC+TGG | 0.590462 | 6_3:-17044009 | Msa0942380:CDS |
| GTTAGATAATGTGCAATCAA+CGG | 0.590543 | 6_3:+17040332 | Msa0942370:intron |
| ATGCCAGTATACTGCCCGGT+TGG | 0.590661 | 6_3:-17040235 | Msa0942380:CDS |
| CAAACCTCTTTGGGATAAGG+AGG | 0.591702 | 6_3:+17043605 | Msa0942370:intron |
| CTTTGTCGCAAGCCTCTGGA+TGG | 0.593116 | 6_3:+17041708 | Msa0942370:intron |
| GAGGCTTGCGACAAAGTTGG+TGG | 0.593292 | 6_3:-17041701 | Msa0942380:CDS |
| AAGGAGGTTCTGGAAAGAGC+CGG | 0.595528 | 6_3:+17043621 | Msa0942370:intron |
| GGCTGGTATCAGCTGAAACA+CGG | 0.597709 | 6_3:+17040207 | Msa0942370:intron |
| AATCAACATCACGGCCGTGC+CGG | 0.603120 | 6_3:+17039006 | Msa0942370:intron |
| TCAGGATTCATGGAAAGCAA+TGG | 0.603546 | 6_3:-17039035 | Msa0942380:CDS |
| GTGCAGTGGCTTGTTACTGG+AGG | 0.606618 | 6_3:-17040448 | Msa0942380:intron |
| GTCATAGAAGACGAGGAACA+AGG | 0.606626 | 6_3:-17039094 | Msa0942380:CDS |
| ATTGGCAAGTGTTCAGAAGG+AGG | 0.606869 | 6_3:-17039231 | Msa0942380:CDS |
| CCCAGGTTATATCCCTCGTG+AGG | 0.611608 | 6_3:-17043747 | Msa0942380:CDS |
| TCGAAGGTCACTGATATGAA+AGG | 0.614152 | 6_3:+17044069 | Msa0942370:intron |
| TCAAGAGTTGAGGGATCCGG+TGG | 0.615744 | 6_3:+17039485 | Msa0942370:intron |
| CTTGTTCACAGATAGGACTT+CGG | 0.617243 | 6_3:-17043799 | Msa0942380:intron |
| ATTCTGTGGAGAAAACTGTA+TGG | 0.621710 | 6_3:+17043162 | Msa0942370:intron |
| GAAGGTCTTCTACTACAGCA+TGG | 0.622146 | 6_3:-17043359 | Msa0942380:CDS |
| GATATCGCGACTAGAAGGAA+AGG | 0.623760 | 6_3:+17040292 | Msa0942370:intron |
| ATGGTTGCCCTAAGCCAGCA+TGG | 0.624220 | 6_3:-17043331 | Msa0942380:CDS |
| TACGGGCTACCATTTAGTGT+AGG | 0.626647 | 6_3:-17043701 | Msa0942380:CDS |
| TGGGAATTCAAAGCTTCTCG+TGG | 0.626791 | 6_3:-17042161 | Msa0942380:CDS |
| AGATAATGGACACCTGGGCA+GGG | 0.628646 | 6_3:+17040584 | Msa0942370:intron |
| ACTGGTGACATATACGGGAA+AGG | 0.631175 | 6_3:-17043974 | Msa0942380:CDS |
| GACAGCCTGGAAATATTACA+AGG | 0.634109 | 6_3:-17043082 | Msa0942380:CDS |
| GATAACTTGATGCTCTACCC+AGG | 0.634601 | 6_3:-17043764 | Msa0942380:CDS |
| ATCAATATGGAATCAGCACT+AGG | 0.635467 | 6_3:+17039365 | Msa0942370:intron |
| TATCATGTTATGTACGCGGA+AGG | 0.636866 | 6_3:-17040273 | Msa0942380:CDS |
| AATGGATGTCGACTCATCGA+GGG | 0.640382 | 6_3:+17042990 | Msa0942370:intron |
| GTATGGTTACTCATTTGGCG+CGG | 0.640480 | 6_3:-17041537 | Msa0942380:CDS |
| ACGGGAAGATAAGGAACACT+GGG | 0.640874 | 6_3:-17044008 | Msa0942380:CDS |
| GACATGCTTAGCATAGAATG+TGG | 0.641341 | 6_3:-17039434 | Msa0942380:CDS |
| AAAGTATGGTGTGCATTCTG+TGG | 0.643793 | 6_3:+17043148 | Msa0942370:intron |
| ACCGGTTCAATTCCCTCACG+AGG | 0.646082 | 6_3:+17043734 | Msa0942370:intron |
| TTGTTTACAAATCAACATCA+CGG | 0.647518 | 6_3:+17038997 | Msa0942370:intron |
| CCAGGTTATATCCCTCGTGA+GGG | 0.652167 | 6_3:-17043746 | Msa0942380:CDS |
| GAGAGGACCAATCACACCGT+GGG | 0.657525 | 6_3:-17042180 | Msa0942380:CDS |
| TGGAACTTGACGCTAACCGA+AGG | 0.659239 | 6_3:-17043424 | Msa0942380:CDS |
| ATCGAGGGAACATAATGTGT+AGG | 0.661006 | 6_3:+17043005 | Msa0942370:intron |
| GTTACTGAGCTGCAATGACG+AGG | 0.661450 | 6_3:-17043060 | Msa0942380:CDS |
| TAATGGATGTCGACTCATCG+AGG | 0.663562 | 6_3:+17042989 | Msa0942370:intron |
| GATGAAGATAATGGACACCT+GGG | 0.665792 | 6_3:+17040579 | Msa0942370:intron |
| CTTGACGCTAACCGAAGGCG+AGG | 0.669541 | 6_3:-17043419 | Msa0942380:CDS |
| TGTCGTGACAAACCATTCAG+AGG | 0.670388 | 6_3:-17039255 | Msa0942380:CDS |
| AGATAATGTGCAATCAACGG+TGG | 0.672201 | 6_3:+17040335 | Msa0942370:intron |
| CGACAAAGCAGACTGGCGAG+AGG | 0.681943 | 6_3:-17039546 | Msa0942380:CDS |
| ATGGCTGCATAAAACAGAGG+AGG | 0.684775 | 6_3:-17041633 | Msa0942380:CDS |
| CCTCACGAGGGATATAACCT+GGG | 0.688017 | 6_3:+17043747 | Msa0942370:intron |
| AATGAGATACTGATATACCC+GGG | 0.688331 | 6_3:-17039644 | Msa0942380:CDS |
| GATGCTGATATGATCATGAG+AGG | 0.690513 | 6_3:-17042197 | Msa0942380:CDS |
| TGTTCGGGTCATAGAAGACG+AGG | 0.693244 | 6_3:-17039101 | Msa0942380:CDS |
| CAAGAGTTGAGGGATCCGGT+GGG | 0.697089 | 6_3:+17039486 | Msa0942370:intron |
| GCTATGGCTGCATAAAACAG+AGG | 0.699820 | 6_3:-17041636 | Msa0942380:CDS |
| AGACTGGCGAGAGGTTGATG+TGG | 0.700331 | 6_3:-17039537 | Msa0942380:CDS |
| CCGGTTCAATTCCCTCACGA+GGG | 0.704114 | 6_3:+17043735 | Msa0942370:intron |
| GAGACATATATGAATCAGGG+TGG | 0.708598 | 6_3:-17041571 | Msa0942380:CDS |
| GCGATATCATGTTATGTACG+CGG | 0.723548 | 6_3:-17040277 | Msa0942380:CDS |
| ATTACACACTAGCCATCCAG+AGG | 0.725347 | 6_3:-17041720 | Msa0942380:CDS |
| TGAGAGGACCAATCACACCG+TGG | 0.744131 | 6_3:-17042181 | Msa0942380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAAATGATTTAG+AGG | + | chr6_3:17041088-17041107 | Msa0942370:intron | 10.0% |
| !!! | TATTTTTCTTTTCTAAATTA+AGG | + | chr6_3:17042733-17042752 | Msa0942370:intron | 10.0% |
| !! | CTATTTAATGATAAAAAAAA+GGG | + | chr6_3:17043800-17043819 | Msa0942370:intron | 10.0% |
| !! | ACTATTTAATGATAAAAAAA+AGG | + | chr6_3:17043801-17043820 | Msa0942370:intron | 10.0% |
| !!! | NNNNNNNNNNTTTTTTGTCC+AGG | - | chr6_3:17039480-17039499 | Msa0942380:CDS | 15.0% |
| !!! | TTTAAAAAGTAAATCTTTTG+CGG | - | chr6_3:17040363-17040382 | Msa0942380:CDS | 15.0% |
| !!! | AAAATCATTTTCTTAAGAAA+AGG | + | chr6_3:17041020-17041039 | Msa0942370:intron | 15.0% |
| !!! | TAAGAAAATGATTTTCATTA+TGG | - | chr6_3:17041025-17041044 | Msa0942380:intron | 15.0% |
| !! | AAATGATCATAATCATAAAT+TGG | - | chr6_3:17042973-17042992 | Msa0942380:intron | 15.0% |
| !!! | AAATATAGAGTTTTTCATTA+TGG | - | chr6_3:17044055-17044074 | Msa0942380:CDS | 15.0% |
| !!! | TTGTCTTGAGATTTTTATAT+CGG | + | chr6_3:17039142-17039161 | Msa0942370:intron | 20.0% |
| !! | TCTTTCTTTCTATATAAGTT+AGG | - | chr6_3:17039175-17039194 | Msa0942380:CDS | 20.0% |
| !! | ATAATGAACGTGTTAATTTA+AGG | + | chr6_3:17039761-17039780 | Msa0942370:intron | 20.0% |
| !!! | AGAAAAATTTCTCCATTTTT+TGG | - | chr6_3:17040112-17040131 | Msa0942380:intron | 20.0% |
| !! | AGTATATATAGACCAAAAAA+TGG | + | chr6_3:17040127-17040146 | Msa0942370:intron | 20.0% |
| !! | AATATATATGCACAGAAATA+TGG | - | chr6_3:17040148-17040167 | Msa0942380:intron | 20.0% |
| !! | TGCATAAACATTATAAATGA+AGG | - | chr6_3:17040277-17040296 | Msa0942380:CDS | 20.0% |
| !! | TAAGAAAAATTGTAACATAC+AGG | + | chr6_3:17040860-17040879 | Msa0942370:intron | 20.0% |
| !! | TAATGATGCTACAAAATTTA+AGG | + | chr6_3:17041125-17041144 | Msa0942370:intron | 20.0% |
| !!! | TAGATATCTTAAGCTAATTT+TGG | - | chr6_3:17041153-17041172 | Msa0942380:intron | 20.0% |
| !!! | TTTTTAGCATATAGTCAAAA+TGG | + | chr6_3:17041328-17041347 | Msa0942370:intron | 20.0% |
| !! | TGGTTTAAATTAACATTAAC+AGG | + | chr6_3:17041577-17041596 | Msa0942370:intron | 20.0% |
| !!! | TAAAATGTTTCTAAATCTCA+AGG | + | chr6_3:17042704-17042723 | Msa0942370:intron | 20.0% |
| ! | AACCTTACTCAACTATTTAT+AGG | - | chr6_3:17039201-17039220 | Msa0942380:CDS | 25.0% |
| ! | GAAATGTGAAAAAAAGCAAA+TGG | + | chr6_3:17039272-17039291 | Msa0942370:intron | 25.0% |
| !! | AAAAGGTTGTGACAATATTT+TGG | - | chr6_3:17039508-17039527 | Msa0942380:CDS | 25.0% |
| !!! | TTTCTAAAACAGAAGAAGTA+CGG | - | chr6_3:17039627-17039646 | Msa0942380:CDS | 25.0% |
| ! | TTTCATGCTATAAGTATACT+TGG | + | chr6_3:17040079-17040098 | Msa0942370:intron | 25.0% |
| ! | TAACAAACGAATGTAAAACT+CGG | + | chr6_3:17040892-17040911 | Msa0942370:intron | 25.0% |
| ! | AACAAACACATAATAGTTTC+TGG | - | chr6_3:17041050-17041069 | Msa0942380:intron | 25.0% |
| ! | AATTGTATAATAGTTTCGCT+TGG | - | chr6_3:17041268-17041287 | Msa0942380:intron | 25.0% |
| !! | AGTTCTTCTGTTTTCATTTT+AGG | - | chr6_3:17041353-17041372 | Msa0942380:intron | 25.0% |
| ! | CATTATGCAAGAAATATAAC+AGG | - | chr6_3:17042061-17042080 | Msa0942380:intron | 25.0% |
| ! | AACAAAATAGAGAAAAACAG+AGG | + | chr6_3:17042336-17042355 | Msa0942370:intron | 25.0% |
| !! | TTTTTCTCTATTTTGTTGCT+TGG | - | chr6_3:17042339-17042358 | Msa0942380:intron | 25.0% |
| ! | AGATAATTGAGGAAAAACAA+AGG | + | chr6_3:17042439-17042458 | Msa0942370:intron | 25.0% |
| ! | AAATAGATAGAGAAAACAGA+GGG | + | chr6_3:17042490-17042509 | Msa0942370:intron | 25.0% |
| ! | TAAACATATTAGGGTATGTT+TGG | + | chr6_3:17042791-17042810 | Msa0942370:intron | 25.0% |
| ! | ACAGAGTGATAAACATATTA+GGG | + | chr6_3:17042800-17042819 | Msa0942370:intron | 25.0% |
| ! | TACAGAGTGATAAACATATT+AGG | + | chr6_3:17042801-17042820 | Msa0942370:intron | 25.0% |
| ! | TTCTATCTCCATATTAAGAA+CGG | - | chr6_3:17043232-17043251 | Msa0942380:CDS | 25.0% |
| ! | ATTGTTGAATTCCTAATACT+AGG | + | chr6_3:17043772-17043791 | Msa0942370:intron | 25.0% |
| ! | AAAACTCTATATTTGACGTT+CGG | + | chr6_3:17044049-17044068 | Msa0942370:intron | 25.0% |
| !! | AATTTCAAGTGCTTCATTTA+GGG | + | chr6_3:17044251-17044270 | Msa0942370:intron | 25.0% |
| ! | TTCCATATTGATATCAAAAG+AGG | - | chr6_3:17044300-17044319 | Msa0942380:intron | 25.0% |
| !! | ATCCTCTTTTGATATCAATA+TGG | + | chr6_3:17044305-17044324 | Msa0942370:intron | 25.0% |
| ! | ATTTAGTTCAGAGAATGAGA+AGG | - | chr6_3:17039015-17039034 | Msa0942380:CDS | 30.0% |
| !!! | AGAATTTTGAAACCGAGTTA+TGG | - | chr6_3:17039070-17039089 | Msa0942380:CDS | 30.0% |
| GAGGGAAAGATGAAAATATT+TGG | - | chr6_3:17039114-17039133 | Msa0942380:CDS | 30.0% | |
| GACCTATAAATAGTTGAGTA+AGG | + | chr6_3:17039206-17039225 | Msa0942370:intron | 30.0% | |
| ATGTGAAAAAAAGCAAATGG+AGG | + | chr6_3:17039269-17039288 | Msa0942370:intron | 30.0% | |
| ! | TTTTTGTCCAGGTACTTAAA+AGG | - | chr6_3:17039491-17039510 | Msa0942380:CDS | 30.0% |
| !! | TTCTAAAACAGAAGAAGTAC+GGG | - | chr6_3:17039628-17039647 | Msa0942380:CDS | 30.0% |
| AACATAACTGGTGACATATA+CGG | - | chr6_3:17039674-17039693 | Msa0942380:CDS | 30.0% | |
| GAACAAGAGAGAAAACAAAA+GGG | + | chr6_3:17039842-17039861 | Msa0942370:intron | 30.0% | |
| TGAACAAGAGAGAAAACAAA+AGG | + | chr6_3:17039843-17039862 | Msa0942370:intron | 30.0% | |
| CATAAACAATTCCATCATCA+TGG | + | chr6_3:17040006-17040025 | Msa0942370:intron | 30.0% | |
| GAATTGTTTATGAATGCAAC+CGG | - | chr6_3:17040014-17040033 | Msa0942380:intron | 30.0% | |
| ! | TTTCTAAGTTTTGCTGATGT+TGG | - | chr6_3:17040180-17040199 | Msa0942380:CDS | 30.0% |
| ! | GTTGGAAATCATTTTATTGC+AGG | - | chr6_3:17040198-17040217 | Msa0942380:CDS | 30.0% |
| TTTATTGCAGGTATTACAGT+TGG | - | chr6_3:17040210-17040229 | Msa0942380:CDS | 30.0% | |
| !! | TCCTGCTACTTTAAAAATGA+TGG | - | chr6_3:17040411-17040430 | Msa0942380:CDS | 30.0% |
| !!! | TCCATCATTTTTAAAGTAGC+AGG | + | chr6_3:17040415-17040434 | Msa0942370:intron | 30.0% |
| ! | GAGAAAACTGTATGGATTTT+GGG | + | chr6_3:17040487-17040506 | Msa0942370:intron | 30.0% |
| AGTAACCTTGTAATATTTCC+AGG | + | chr6_3:17040580-17040599 | Msa0942370:intron | 30.0% | |
| ! | GAGGATTTAAGGAAGTATAA+AGG | - | chr6_3:17040613-17040632 | Msa0942380:CDS | 30.0% |
| AATTACCAATCTCCTGTTAA+TGG | + | chr6_3:17040685-17040704 | Msa0942370:intron | 30.0% | |
| AAAATCAATCATGGAAGGAA+AGG | - | chr6_3:17040826-17040845 | Msa0942380:intron | 30.0% | |
| ! | GATTTTTATCCTGTGAAAAG+TGG | + | chr6_3:17040915-17040934 | Msa0942370:intron | 30.0% |
| TATTATACAATTTCCCACCT+CGG | + | chr6_3:17041260-17041279 | Msa0942370:intron | 30.0% | |
| AAACCAGTGTTGTCAAATAA+TGG | - | chr6_3:17041591-17041610 | Msa0942380:CDS | 30.0% | |
| TCAAATTCCACCACATTATA+AGG | + | chr6_3:17041634-17041653 | Msa0942370:intron | 30.0% | |
| !! | TTTGATGACTGCATTTTTCA+TGG | - | chr6_3:17041786-17041805 | Msa0942380:intron | 30.0% |
| TTATGCATATAGATGATCTC+CGG | - | chr6_3:17041984-17042003 | Msa0942380:intron | 30.0% | |
| AGATGATAGAGGAAAAACAA+AGG | + | chr6_3:17042367-17042386 | Msa0942370:intron | 30.0% | |
| CATCAAAACAGAGATAATTG+AGG | + | chr6_3:17042450-17042469 | Msa0942370:intron | 30.0% | |
| !!! | ATTATCTCTGTTTTGATGCT+TGG | - | chr6_3:17042452-17042471 | Msa0942380:intron | 30.0% |
| GAAATAGATAGAGAAAACAG+AGG | + | chr6_3:17042491-17042510 | Msa0942370:intron | 30.0% | |
| ! | TTTGGATTGAGGATTTTGAA+AGG | + | chr6_3:17042773-17042792 | Msa0942370:intron | 30.0% |
| CTCTGTATAAAAAATTGTGC+TGG | - | chr6_3:17042850-17042869 | Msa0942380:intron | 30.0% | |
| AAACAAATGAACTGAACTCA+TGG | + | chr6_3:17042905-17042924 | Msa0942370:intron | 30.0% | |
| AGATTACCTGAATGTTTCTT+TGG | - | chr6_3:17043175-17043194 | Msa0942380:CDS | 30.0% | |
| GATTACCTGAATGTTTCTTT+GGG | - | chr6_3:17043176-17043195 | Msa0942380:CDS | 30.0% | |
| TAATACCCAAAGAAACATTC+AGG | + | chr6_3:17043184-17043203 | Msa0942370:intron | 30.0% | |
| CCATTAATCCGTTCTTAATA+TGG | + | chr6_3:17043243-17043262 | Msa0942370:intron | 30.0% | |
| !! | CCATATTAAGAACGGATTAA+TGG | - | chr6_3:17043240-17043259 | Msa0942380:CDS | 30.0% |
| GTTAGATAATGTGCAATCAA+CGG | + | chr6_3:17043325-17043344 | Msa0942370:intron | 30.0% | |
| TTGATTGCACATTATCTAAC+TGG | - | chr6_3:17043325-17043344 | Msa0942380:CDS | 30.0% | |
| !!! | CAAGGATAGTTTTGGTAAAA+TGG | + | chr6_3:17043471-17043490 | Msa0942370:intron | 30.0% |
| GATCATCATAACCTAGTATT+AGG | - | chr6_3:17043758-17043777 | Msa0942380:CDS | 30.0% | |
| ATCATGAAAGAGAAAAGCAA+AGG | + | chr6_3:17043888-17043907 | Msa0942370:intron | 30.0% | |
| AGTGTAGTGTAACAATTTGT+GGG | + | chr6_3:17043916-17043935 | Msa0942370:intron | 30.0% | |
| TAGTGTAGTGTAACAATTTG+TGG | + | chr6_3:17043917-17043936 | Msa0942370:intron | 30.0% | |
| CATCAAATGAATAACATCAC+TGG | + | chr6_3:17043963-17043982 | Msa0942370:intron | 30.0% | |
| TTGATGTGGTTAACAAATGT+TGG | - | chr6_3:17044131-17044150 | Msa0942380:CDS | 30.0% | |
| TGATGTGGTTAACAAATGTT+GGG | - | chr6_3:17044132-17044151 | Msa0942380:CDS | 30.0% | |
| AACTCTTGATCAAGCTAATA+AGG | - | chr6_3:17044183-17044202 | Msa0942380:intron | 30.0% | |
| ! | GAATTTCAAGTGCTTCATTT+AGG | + | chr6_3:17044252-17044271 | Msa0942370:intron | 30.0% |
| TACTGAATCAATACTTGCAT+CGG | + | chr6_3:17044371-17044390 | Msa0942370:intron | 30.0% | |
| !! | GTTTTGGGTGGTATTTTTAT+GGG | - | chr6_3:17044489-17044508 | Msa0942380:intron | 30.0% |
| !! | GTATTTTTATGGGCATTTTC+TGG | - | chr6_3:17044499-17044518 | Msa0942380:intron | 30.0% |
| !! | ATTTTCTGGATTCGGTTTTT+TGG | - | chr6_3:17044513-17044532 | Msa0942380:intron | 30.0% |
| TTCAGAGAATGAGAAGGTTA+GGG | - | chr6_3:17039021-17039040 | Msa0942380:CDS | 35.0% | |
| ATCGTCTCAAAACCATAACT+CGG | + | chr6_3:17039085-17039104 | Msa0942370:intron | 35.0% | |
| TTGAGACGATGAAAAAGAAG+AGG | - | chr6_3:17039095-17039114 | Msa0942380:CDS | 35.0% | |
| TGAGACGATGAAAAAGAAGA+GGG | - | chr6_3:17039096-17039115 | Msa0942380:CDS | 35.0% | |
| GCAAATGGAGGTTACATTAA+GGG | + | chr6_3:17039257-17039276 | Msa0942370:intron | 35.0% | |
| AGCAAATGGAGGTTACATTA+AGG | + | chr6_3:17039258-17039277 | Msa0942370:intron | 35.0% | |
| !!! | TCTGTTTTAGAAAGCCACAA+GGG | + | chr6_3:17039620-17039639 | Msa0942370:intron | 35.0% |
| !!! | TTCTGTTTTAGAAAGCCACA+AGG | + | chr6_3:17039621-17039640 | Msa0942370:intron | 35.0% |
| ACATAACTGGTGACATATAC+GGG | - | chr6_3:17039675-17039694 | Msa0942380:CDS | 35.0% | |
| ! | GAGATGTATGGATACTCTTT+TGG | - | chr6_3:17039713-17039732 | Msa0942380:intron | 35.0% |
| AGAGAGAAAACAAAAGGGAA+GGG | + | chr6_3:17039837-17039856 | Msa0942370:intron | 35.0% | |
| AAGAGAGAAAACAAAAGGGA+AGG | + | chr6_3:17039838-17039857 | Msa0942370:intron | 35.0% | |
| TTTCTCTCTTGTTCACAGAT+AGG | - | chr6_3:17039848-17039867 | Msa0942380:intron | 35.0% | |
| TAATAAATAGTCCTCGCCTT+CGG | + | chr6_3:17040249-17040268 | Msa0942370:intron | 35.0% | |
| ! | GTAGCAGGATTCACATATTT+TGG | + | chr6_3:17040400-17040419 | Msa0942370:intron | 35.0% |
| ! | GGAGAAAACTGTATGGATTT+TGG | + | chr6_3:17040488-17040507 | Msa0942370:intron | 35.0% |
| ATTCTGTGGAGAAAACTGTA+TGG | + | chr6_3:17040495-17040514 | Msa0942370:intron | 35.0% | |
| AATGCACACCATACTTTGAT+TGG | - | chr6_3:17040512-17040531 | Msa0942380:intron | 35.0% | |
| ACAGTTTGCCAATCAAAGTA+TGG | + | chr6_3:17040523-17040542 | Msa0942370:intron | 35.0% | |
| TACTTTGATTGGCAAACTGT+AGG | - | chr6_3:17040523-17040542 | Msa0942380:intron | 35.0% | |
| CATGGATGTTTACTGTGATT+GGG | - | chr6_3:17040779-17040798 | Msa0942380:intron | 35.0% | |
| GTCACAAAATCAATCATGGA+AGG | - | chr6_3:17040821-17040840 | Msa0942380:intron | 35.0% | |
| ATTATACAATTTCCCACCTC+GGG | + | chr6_3:17041259-17041278 | Msa0942370:intron | 35.0% | |
| GGTAAGTTCTTCTGTTTATG+TGG | - | chr6_3:17041289-17041308 | Msa0942380:intron | 35.0% | |
| !! | TGACTTGGGTTGATGTTTAT+CGG | - | chr6_3:17041550-17041569 | Msa0942380:CDS | 35.0% |
| ! | ATAAGGTTAAGGCACTACTA+AGG | + | chr6_3:17041617-17041636 | Msa0942370:intron | 35.0% |
| AGTGCCTTAACCTTATAATG+TGG | - | chr6_3:17041621-17041640 | Msa0942380:CDS | 35.0% | |
| TCCACCACATTATAAGGTTA+AGG | + | chr6_3:17041628-17041647 | Msa0942370:intron | 35.0% | |
| TTTCATGGTTGCAAACATAC+AGG | - | chr6_3:17041801-17041820 | Msa0942380:intron | 35.0% | |
| ACAGGAGACATATATGAATC+AGG | - | chr6_3:17042079-17042098 | Msa0942380:intron | 35.0% | |
| CAGGAGACATATATGAATCA+GGG | - | chr6_3:17042080-17042099 | Msa0942380:intron | 35.0% | |
| GAGATGTATGGTTACTCATT+TGG | - | chr6_3:17042112-17042131 | Msa0942380:intron | 35.0% | |
| GACAAATGGCAAAAAAACAG+AGG | + | chr6_3:17042293-17042312 | Msa0942370:intron | 35.0% | |
| AGCAAAAAACAGAGGACAAA+TGG | + | chr6_3:17042307-17042326 | Msa0942370:intron | 35.0% | |
| GGAAAAACAGCAAAAAACAG+AGG | + | chr6_3:17042315-17042334 | Msa0942370:intron | 35.0% | |
| GCAATAAACAGAGATGATAG+AGG | + | chr6_3:17042378-17042397 | Msa0942370:intron | 35.0% | |
| AGGGAAAAACAGAGGAAAAA+TGG | + | chr6_3:17042400-17042419 | Msa0942370:intron | 35.0% | |
| AACAAAACAGGGAAAAACAG+AGG | + | chr6_3:17042408-17042427 | Msa0942370:intron | 35.0% | |
| !! | TTTTTCCCTGTTTTGTTGCT+TGG | - | chr6_3:17042411-17042430 | Msa0942380:intron | 35.0% |
| TTTCTAAATCTCAAGGAGCA+AGG | + | chr6_3:17042697-17042716 | Msa0942370:intron | 35.0% | |
| !! | TTGAGGATTTTGAAAGGAGA+GGG | + | chr6_3:17042767-17042786 | Msa0942370:intron | 35.0% |
| !! | ATTGAGGATTTTGAAAGGAG+AGG | + | chr6_3:17042768-17042787 | Msa0942370:intron | 35.0% |
| ATTAGGGTATGTTTGGATTG+AGG | + | chr6_3:17042784-17042803 | Msa0942370:intron | 35.0% | |
| GAAACATTCAGGTAATCTCA+TGG | + | chr6_3:17043173-17043192 | Msa0942370:intron | 35.0% | |
| CATGAAAGACAACTCAGAAT+CGG | + | chr6_3:17043269-17043288 | Msa0942370:intron | 35.0% | |
| GGTTAAATCATTGCACTTAG+AGG | - | chr6_3:17043294-17043313 | Msa0942380:CDS | 35.0% | |
| !! | GCACATTATCTAACTGGTTT+TGG | - | chr6_3:17043331-17043350 | Msa0942380:CDS | 35.0% |
| ATACTGGCATTGCAATATGA+AGG | + | chr6_3:17043409-17043428 | Msa0942370:intron | 35.0% | |
| !!! | GATAGTTTTGGTAAAATGGC+TGG | + | chr6_3:17043467-17043486 | Msa0942370:intron | 35.0% |
| TTACCAAAACTATCCTTGCT+TGG | - | chr6_3:17043473-17043492 | Msa0942380:intron | 35.0% | |
| TACTTACTTGAGAGGCTAAT+GGG | - | chr6_3:17043623-17043642 | Msa0942380:CDS | 35.0% | |
| !!! | TAATGGGGTGTTTGTTTTAG+AGG | - | chr6_3:17043639-17043658 | Msa0942380:CDS | 35.0% |
| ATAGTACTTCTGCACAGTTA+AGG | - | chr6_3:17043816-17043835 | Msa0942380:intron | 35.0% | |
| TAGTACTTCTGCACAGTTAA+GGG | - | chr6_3:17043817-17043836 | Msa0942380:intron | 35.0% | |
| CAATGAGATACTGATATACC+CGG | - | chr6_3:17044009-17044028 | Msa0942380:CDS | 35.0% | |
| AATGAGATACTGATATACCC+GGG | - | chr6_3:17044010-17044029 | Msa0942380:CDS | 35.0% | |
| ! | TATGGATTGAGATTCAGTGT+TGG | - | chr6_3:17044073-17044092 | Msa0942380:CDS | 35.0% |
| ! | ATGGATTGAGATTCAGTGTT+GGG | - | chr6_3:17044074-17044093 | Msa0942380:CDS | 35.0% |
| ! | TTAGCTTGATCAAGAGTTGA+GGG | + | chr6_3:17044181-17044200 | Msa0942370:intron | 35.0% |
| ! | ATTAGCTTGATCAAGAGTTG+AGG | + | chr6_3:17044182-17044201 | Msa0942370:intron | 35.0% |
| ATCAATATGGAATCAGCACT+AGG | + | chr6_3:17044292-17044311 | Msa0942370:intron | 35.0% | |
| GATGAGAAAACAGAAGAAAG+TGG | - | chr6_3:17044322-17044341 | Msa0942380:intron | 35.0% | |
| AGAAGAAAGTGGAACTTCAA+GGG | - | chr6_3:17044333-17044352 | Msa0942380:intron | 35.0% | |
| ATCTCATCTTTCTGAACACT+TGG | + | chr6_3:17044454-17044473 | Msa0942370:intron | 35.0% | |
| ATGAGATACCAAGTTCTTTC+AGG | - | chr6_3:17044467-17044486 | Msa0942380:intron | 35.0% | |
| !!! | TACCAAGTTCTTTCAGGTTT+TGG | - | chr6_3:17044473-17044492 | Msa0942380:intron | 35.0% |
| !!! | ACCAAGTTCTTTCAGGTTTT+GGG | - | chr6_3:17044474-17044493 | Msa0942380:intron | 35.0% |
| !!! | GGTTTTGGGTGGTATTTTTA+TGG | - | chr6_3:17044488-17044507 | Msa0942380:intron | 35.0% |
| ! | TTATGGGCATTTTCTGGATT+CGG | - | chr6_3:17044505-17044524 | Msa0942380:intron | 35.0% |
| GGATGAAACATCATAGTAGA+AGG | - | chr6_3:17044581-17044600 | Msa0942380:intron | 35.0% | |
| GTTCAGAGAATGAGAAGGTT+AGG | - | chr6_3:17039020-17039039 | Msa0942380:CDS | 40.0% | |
| AGAAGGTTAGGGTTTCGAAA+AGG | - | chr6_3:17039032-17039051 | Msa0942380:CDS | 40.0% | |
| ATGGAGGTTACATTAAGGGA+CGG | + | chr6_3:17039253-17039272 | Msa0942370:intron | 40.0% | |
| !! | GTCACAACCTTTTAAGTACC+TGG | + | chr6_3:17039501-17039520 | Msa0942370:intron | 40.0% |
| TCGAAGGTCACTGATATGAA+AGG | + | chr6_3:17039588-17039607 | Msa0942370:intron | 40.0% | |
| !!! | TGTTTTAGAAAGCCACAAGG+GGG | + | chr6_3:17039618-17039637 | Msa0942370:intron | 40.0% |
| !!! | CTGTTTTAGAAAGCCACAAG+GGG | + | chr6_3:17039619-17039638 | Msa0942370:intron | 40.0% |
| ! | AGAAGAAGTACGGGAAGATA+AGG | - | chr6_3:17039637-17039656 | Msa0942380:CDS | 40.0% |
| CTTGTTCACAGATAGGACTT+CGG | - | chr6_3:17039855-17039874 | Msa0942380:intron | 40.0% | |
| TACCATTTAGTGTAGGGAAC+TGG | - | chr6_3:17039960-17039979 | Msa0942380:intron | 40.0% | |
| !! | GTACAAACCTCTTTGGGATA+AGG | + | chr6_3:17040055-17040074 | Msa0942370:intron | 40.0% |
| ATGCACAGAAATATGGCATC+AGG | - | chr6_3:17040155-17040174 | Msa0942380:intron | 40.0% | |
| !!! | ATTTTGACCATGCTGGCTTA+GGG | + | chr6_3:17040333-17040352 | Msa0942370:intron | 40.0% |
| !!! | TATTTTGACCATGCTGGCTT+AGG | + | chr6_3:17040334-17040353 | Msa0942370:intron | 40.0% |
| !!! | CTCAAGTATTTTGACCATGC+TGG | + | chr6_3:17040340-17040359 | Msa0942370:intron | 40.0% |
| TTTCCATCATCACGATCAAC+GGG | + | chr6_3:17040457-17040476 | Msa0942370:intron | 40.0% | |
| CTTTCCATCATCACGATCAA+CGG | + | chr6_3:17040458-17040477 | Msa0942370:intron | 40.0% | |
| !!! | ACTGTATGGATTTTGGGATG+TGG | + | chr6_3:17040481-17040500 | Msa0942370:intron | 40.0% |
| AAAGTATGGTGTGCATTCTG+TGG | + | chr6_3:17040509-17040528 | Msa0942370:intron | 40.0% | |
| ! | ATGCACAGTTTTCGTTTGAG+TGG | - | chr6_3:17040550-17040569 | Msa0942380:intron | 40.0% |
| GACAGCCTGGAAATATTACA+AGG | - | chr6_3:17040572-17040591 | Msa0942380:intron | 40.0% | |
| GAAGTATAAAGGCCAAGATC+TGG | - | chr6_3:17040624-17040643 | Msa0942380:CDS | 40.0% | |
| ATCGAGGGAACATAATGTGT+AGG | + | chr6_3:17040652-17040671 | Msa0942370:intron | 40.0% | |
| ATGAGTCGACATCCATTAAC+AGG | - | chr6_3:17040670-17040689 | Msa0942380:intron | 40.0% | |
| GACATCCATTAACAGGAGAT+TGG | - | chr6_3:17040677-17040696 | Msa0942380:intron | 40.0% | |
| GCATGGATGTTTACTGTGAT+TGG | - | chr6_3:17040778-17040797 | Msa0942380:intron | 40.0% | |
| ATTGGGACAAAGTTGTCGAT+TGG | - | chr6_3:17040796-17040815 | Msa0942380:intron | 40.0% | |
| GGCAGTCACAAAATCAATCA+TGG | - | chr6_3:17040817-17040836 | Msa0942380:intron | 40.0% | |
| ATCATGGAAGGAAAGGACTA+AGG | - | chr6_3:17040833-17040852 | Msa0942380:intron | 40.0% | |
| TCATGGAAGGAAAGGACTAA+GGG | - | chr6_3:17040834-17040853 | Msa0942380:intron | 40.0% | |
| !! | CGTTTGTTACCACTTTTCAC+AGG | - | chr6_3:17040903-17040922 | Msa0942380:intron | 40.0% |
| GCACAAACTAACATGGGAAA+TGG | + | chr6_3:17041234-17041253 | Msa0942370:intron | 40.0% | |
| ! | GCAGCTGGTTTATTAATTGC+TGG | + | chr6_3:17041382-17041401 | Msa0942370:intron | 40.0% |
| GATGCTGATATGATCATGAG+AGG | - | chr6_3:17041457-17041476 | Msa0942380:intron | 40.0% | |
| TACTCGTAAGGAGTTGAAAC+AGG | + | chr6_3:17041523-17041542 | Msa0942370:intron | 40.0% | |
| AAACATCAACCCAAGTCAGT+AGG | + | chr6_3:17041548-17041567 | Msa0942370:intron | 40.0% | |
| !! | GACTTGGGTTGATGTTTATC+GGG | - | chr6_3:17041551-17041570 | Msa0942380:CDS | 40.0% |
| AGGCCATTATTTGACAACAC+TGG | + | chr6_3:17041597-17041616 | Msa0942370:intron | 40.0% | |
| GCCTTAACCTTATAATGTGG+TGG | - | chr6_3:17041624-17041643 | Msa0942380:CDS | 40.0% | |
| GTTCGTTGTCACAACCAATA+AGG | + | chr6_3:17041907-17041926 | Msa0942370:intron | 40.0% | |
| !! | TCCGGAAATTTGCTATGCTA+TGG | - | chr6_3:17042002-17042021 | Msa0942380:intron | 40.0% |
| GCCATAGCATAGCAAATTTC+CGG | + | chr6_3:17042006-17042025 | Msa0942370:intron | 40.0% | |
| GAGACATATATGAATCAGGG+TGG | - | chr6_3:17042083-17042102 | Msa0942380:intron | 40.0% | |
| CATACTTGACCAATGTAGTC+AGG | - | chr6_3:17042175-17042194 | Msa0942380:CDS | 40.0% | |
| AGGAACCAAGCAACAAAACA+GGG | + | chr6_3:17042419-17042438 | Msa0942370:intron | 40.0% | |
| AAGGAACCAAGCAACAAAAC+AGG | + | chr6_3:17042420-17042439 | Msa0942370:intron | 40.0% | |
| AGAAAACAGAGGGAAAACAG+AGG | + | chr6_3:17042480-17042499 | Msa0942370:intron | 40.0% | |
| AGTTCTTACGTAGGTTCGAT+CGG | + | chr6_3:17042590-17042609 | Msa0942370:intron | 40.0% | |
| AGCAAGGTCTCAAACTGAAA+AGG | + | chr6_3:17042681-17042700 | Msa0942370:intron | 40.0% | |
| !! | TGAGGATTTTGAAAGGAGAG+GGG | + | chr6_3:17042766-17042785 | Msa0942370:intron | 40.0% |
| TTATACAGAGAGCTTCTAGC+TGG | + | chr6_3:17042840-17042859 | Msa0942370:intron | 40.0% | |
| ! | TCGCATGAGAGATTTTCACA+GGG | - | chr6_3:17043029-17043048 | Msa0942380:CDS | 40.0% |
| !! | GATGAAGATAATGGACACCT+GGG | + | chr6_3:17043078-17043097 | Msa0942370:intron | 40.0% |
| AGGTGTCCATTATCTTCATC+CGG | - | chr6_3:17043078-17043097 | Msa0942380:CDS | 40.0% | |
| CACAAACCGGATGAAGATAA+TGG | + | chr6_3:17043087-17043106 | Msa0942370:intron | 40.0% | |
| TCGGTTAAAGCTTCACAAAC+CGG | + | chr6_3:17043100-17043119 | Msa0942370:intron | 40.0% | |
| GTAGCAGACAGAGATAATGT+CGG | + | chr6_3:17043119-17043138 | Msa0942370:intron | 40.0% | |
| CTTTGGGTATTATTGTGCAG+TGG | - | chr6_3:17043192-17043211 | Msa0942380:CDS | 40.0% | |
| TGAGTTGTCTTTCATGCATC+AGG | - | chr6_3:17043273-17043292 | Msa0942380:CDS | 40.0% | |
| AGATAATGTGCAATCAACGG+TGG | + | chr6_3:17043322-17043341 | Msa0942370:intron | 40.0% | |
| AACATGATATCGCGACTAGA+AGG | + | chr6_3:17043370-17043389 | Msa0942370:intron | 40.0% | |
| GCGATATCATGTTATGTACG+CGG | - | chr6_3:17043377-17043396 | Msa0942380:CDS | 40.0% | |
| TATCATGTTATGTACGCGGA+AGG | - | chr6_3:17043381-17043400 | Msa0942380:CDS | 40.0% | |
| CTACTTACTTGAGAGGCTAA+TGG | - | chr6_3:17043622-17043641 | Msa0942380:CDS | 40.0% | |
| ACTTACTTGAGAGGCTAATG+GGG | - | chr6_3:17043624-17043643 | Msa0942380:CDS | 40.0% | |
| CTATATTTGACGTTCGGTTC+AGG | + | chr6_3:17044043-17044062 | Msa0942370:intron | 40.0% | |
| ! | TGAGATTCAGTGTTGGGAAT+TGG | - | chr6_3:17044080-17044099 | Msa0942380:CDS | 40.0% |
| GACATGCTTAGCATAGAATG+TGG | - | chr6_3:17044220-17044239 | Msa0942380:intron | 40.0% | |
| CAGAAGAAAGTGGAACTTCA+AGG | - | chr6_3:17044332-17044351 | Msa0942380:intron | 40.0% | |
| AGTGGAACTTCAAGGGAAAT+CGG | - | chr6_3:17044340-17044359 | Msa0942380:intron | 40.0% | |
| GACAAACCATTCAGAGGAAT+TGG | - | chr6_3:17044405-17044424 | Msa0942380:intron | 40.0% | |
| ACCCAAAACCTGAAAGAACT+TGG | + | chr6_3:17044478-17044497 | Msa0942370:intron | 40.0% | |
| !!! | AAGTTCTTTCAGGTTTTGGG+TGG | - | chr6_3:17044477-17044496 | Msa0942380:intron | 40.0% |
| !!! | CGTCATTTTTGTCGTGTGTT+CGG | - | chr6_3:17044537-17044556 | Msa0942380:intron | 40.0% |
| !!! | GTCATTTTTGTCGTGTGTTC+GGG | - | chr6_3:17044538-17044557 | Msa0942380:intron | 40.0% |
| AAGCATGCAATCAGGATTCA+TGG | - | chr6_3:17044609-17044628 | Msa0942380:intron | 40.0% | |
| TCAGGATTCATGGAAAGCAA+TGG | - | chr6_3:17044619-17044638 | Msa0942380:intron | 40.0% | |
| AGGTTACATTAAGGGACGGA+GGG | + | chr6_3:17039249-17039268 | Msa0942370:intron | 45.0% | |
| TACGGGAAGATAAGGAACAC+TGG | - | chr6_3:17039645-17039664 | Msa0942380:CDS | 45.0% | |
| ACGGGAAGATAAGGAACACT+GGG | - | chr6_3:17039646-17039665 | Msa0942380:CDS | 45.0% | |
| ACTGGTGACATATACGGGAA+AGG | - | chr6_3:17039680-17039699 | Msa0942380:CDS | 45.0% | |
| GTGACATATACGGGAAAGGA+TGG | - | chr6_3:17039684-17039703 | Msa0942380:CDS | 45.0% | |
| GGATGGATCAGTGAGATGTA+TGG | - | chr6_3:17039701-17039720 | Msa0942380:intron | 45.0% | |
| GATAACTTGATGCTCTACCC+AGG | - | chr6_3:17039890-17039909 | Msa0942380:intron | 45.0% | |
| ! | GAACCGGTTCTTCTTCACTA+CGG | - | chr6_3:17039935-17039954 | Msa0942380:intron | 45.0% |
| ! | AACCGGTTCTTCTTCACTAC+GGG | - | chr6_3:17039936-17039955 | Msa0942380:intron | 45.0% |
| ! | TACGGGCTACCATTTAGTGT+AGG | - | chr6_3:17039953-17039972 | Msa0942380:intron | 45.0% |
| ! | ACGGGCTACCATTTAGTGTA+GGG | - | chr6_3:17039954-17039973 | Msa0942380:intron | 45.0% |
| GACCAGTTCCCTACACTAAA+TGG | + | chr6_3:17039965-17039984 | Msa0942370:intron | 45.0% | |
| AAACTCGCTCACCATGATGA+TGG | - | chr6_3:17039992-17040011 | Msa0942380:intron | 45.0% | |
| !! | TCTTTGGGATAAGGAGGTTC+TGG | + | chr6_3:17040046-17040065 | Msa0942370:intron | 45.0% |
| AGAACCTCCTTATCCCAAAG+AGG | - | chr6_3:17040045-17040064 | Msa0942380:intron | 45.0% | |
| !! | CAAACCTCTTTGGGATAAGG+AGG | + | chr6_3:17040052-17040071 | Msa0942370:intron | 45.0% |
| CTTGGCGTACAAACCTCTTT+GGG | + | chr6_3:17040061-17040080 | Msa0942370:intron | 45.0% | |
| ACTTGGCGTACAAACCTCTT+TGG | + | chr6_3:17040062-17040081 | Msa0942370:intron | 45.0% | |
| GAAGGTCTTCTACTACAGCA+TGG | - | chr6_3:17040295-17040314 | Msa0942380:CDS | 45.0% | |
| GCTGCAATGACGAGGATTTA+AGG | - | chr6_3:17040602-17040621 | Msa0942380:CDS | 45.0% | |
| AATGTGTAGGAGCCAGATCT+TGG | + | chr6_3:17040639-17040658 | Msa0942370:intron | 45.0% | |
| !! | AATGGATGTCGACTCATCGA+GGG | + | chr6_3:17040667-17040686 | Msa0942370:intron | 45.0% |
| !! | TAATGGATGTCGACTCATCG+AGG | + | chr6_3:17040668-17040687 | Msa0942370:intron | 45.0% |
| TGTTGCTCGTCATTTCTGCA+TGG | - | chr6_3:17040761-17040780 | Msa0942380:intron | 45.0% | |
| ! | CGGGAAGCACAAACTAACAT+GGG | + | chr6_3:17041240-17041259 | Msa0942370:intron | 45.0% |
| ! | TCGGGAAGCACAAACTAACA+TGG | + | chr6_3:17041241-17041260 | Msa0942370:intron | 45.0% |
| !! | ATGTTAGTTTGTGCTTCCCG+AGG | - | chr6_3:17041240-17041259 | Msa0942380:intron | 45.0% |
| AACCAGCTGCAGTTCTTCAT+TGG | - | chr6_3:17041392-17041411 | Msa0942380:intron | 45.0% | |
| TTGAATTCCCACGGTGTGAT+TGG | + | chr6_3:17041484-17041503 | Msa0942370:intron | 45.0% | |
| !! | CGAGAAGCTTTGAATTCCCA+CGG | + | chr6_3:17041493-17041512 | Msa0942370:intron | 45.0% |
| TGGGAATTCAAAGCTTCTCG+TGG | - | chr6_3:17041493-17041512 | Msa0942380:intron | 45.0% | |
| AGTCAGTAGGCTTACTCGTA+AGG | + | chr6_3:17041535-17041554 | Msa0942370:intron | 45.0% | |
| ! | TACGAGTAAGCCTACTGACT+TGG | - | chr6_3:17041535-17041554 | Msa0942380:CDS | 45.0% |
| !! | ACGAGTAAGCCTACTGACTT+GGG | - | chr6_3:17041536-17041555 | Msa0942380:CDS | 45.0% |
| TTGCATGCCAGCTACCTTAT+TGG | - | chr6_3:17041890-17041909 | Msa0942380:intron | 45.0% | |
| GTCACAACCAATAAGGTAGC+TGG | + | chr6_3:17041900-17041919 | Msa0942370:intron | 45.0% | |
| ATTACACACTAGCCATCCAG+AGG | - | chr6_3:17041934-17041953 | Msa0942380:intron | 45.0% | |
| GCTATGGCTGCATAAAACAG+AGG | - | chr6_3:17042018-17042037 | Msa0942380:intron | 45.0% | |
| ATGGCTGCATAAAACAGAGG+AGG | - | chr6_3:17042021-17042040 | Msa0942380:intron | 45.0% | |
| GTATGGTTACTCATTTGGCG+CGG | - | chr6_3:17042117-17042136 | Msa0942380:intron | 45.0% | |
| ACACGGTTCGTAAGTAGGAT+CGG | + | chr6_3:17042536-17042555 | Msa0942370:intron | 45.0% | |
| ACGTAACACGGTTCGTAAGT+AGG | + | chr6_3:17042541-17042560 | Msa0942370:intron | 45.0% | |
| TAAAGTCGGGGAACGTAACA+CGG | + | chr6_3:17042553-17042572 | Msa0942370:intron | 45.0% | |
| TCAGGAACGAGTTCTTACGT+AGG | + | chr6_3:17042599-17042618 | Msa0942370:intron | 45.0% | |
| GTGTGTCAAGCAATGTAGTC+AGG | + | chr6_3:17042617-17042636 | Msa0942370:intron | 45.0% | |
| !! | AGGATTTTGAAAGGAGAGGG+GGG | + | chr6_3:17042764-17042783 | Msa0942370:intron | 45.0% |
| !! | GAGGATTTTGAAAGGAGAGG+GGG | + | chr6_3:17042765-17042784 | Msa0942370:intron | 45.0% |
| ! | GTCGCATGAGAGATTTTCAC+AGG | - | chr6_3:17043028-17043047 | Msa0942380:CDS | 45.0% |
| ! | CGCATGAGAGATTTTCACAG+GGG | - | chr6_3:17043030-17043049 | Msa0942380:CDS | 45.0% |
| !! | GGATGAAGATAATGGACACC+TGG | + | chr6_3:17043079-17043098 | Msa0942370:intron | 45.0% |
| !! | ATTGTGCAGTGGCTTGTTAC+TGG | - | chr6_3:17043203-17043222 | Msa0942380:CDS | 45.0% |
| GATATCGCGACTAGAAGGAA+AGG | + | chr6_3:17043365-17043384 | Msa0942370:intron | 45.0% | |
| ! | CTGCCAAGCAAGGATAGTTT+TGG | + | chr6_3:17043479-17043498 | Msa0942370:intron | 45.0% |
| TCCTTGCTTGGCAGTTTATG+AGG | - | chr6_3:17043485-17043504 | Msa0942380:intron | 45.0% | |
| ACCTCATAAACTGCCAAGCA+AGG | + | chr6_3:17043489-17043508 | Msa0942370:intron | 45.0% | |
| TGGCAAAGACCTGTTATAGC+TGG | - | chr6_3:17043533-17043552 | Msa0942380:intron | 45.0% | |
| CAAAGACCTGTTATAGCTGG+TGG | - | chr6_3:17043536-17043555 | Msa0942380:intron | 45.0% | |
| CGTAAACCACCAGCTATAAC+AGG | + | chr6_3:17043545-17043564 | Msa0942370:intron | 45.0% | |
| ! | GTCGCATGAGAGATTTTCAC+AGG | + | chr6_3:17043028-17043047 | Msa0942370:intron | 45.0% |
| TTCGGTTCAGGAACATATCC+CGG | + | chr6_3:17044031-17044050 | Msa0942370:intron | 45.0% | |
| TGATCAAGAGTTGAGGGATC+CGG | + | chr6_3:17044175-17044194 | Msa0942370:intron | 45.0% | |
| ! | ATGGTTTGTCACGACACGAT+TGG | + | chr6_3:17044395-17044414 | Msa0942370:intron | 45.0% |
| TGTCGTGACAAACCATTCAG+AGG | - | chr6_3:17044399-17044418 | Msa0942380:intron | 45.0% | |
| CACTTGCCAATTCCTCTGAA+TGG | + | chr6_3:17044414-17044433 | Msa0942370:intron | 45.0% | |
| GGAATTGGCAAGTGTTCAGA+AGG | - | chr6_3:17044420-17044439 | Msa0942380:intron | 45.0% | |
| ATTGGCAAGTGTTCAGAAGG+AGG | - | chr6_3:17044423-17044442 | Msa0942380:intron | 45.0% | |
| GTCATAGAAGACGAGGAACA+AGG | - | chr6_3:17044560-17044579 | Msa0942380:intron | 45.0% | |
| ! | AGGAGAAGAAGCATGCAATC+AGG | - | chr6_3:17044601-17044620 | Msa0942380:intron | 45.0% |
| GAGGTTACATTAAGGGACGG+AGG | + | chr6_3:17039250-17039269 | Msa0942370:intron | 50.0% | |
| CACTGGGCGACAAACATAAC+TGG | - | chr6_3:17039662-17039681 | Msa0942380:CDS | 50.0% | |
| CCTCACGAGGGATATAACCT+GGG | + | chr6_3:17039910-17039929 | Msa0942370:intron | 50.0% | |
| CCAGGTTATATCCCTCGTGA+GGG | - | chr6_3:17039908-17039927 | Msa0942380:intron | 50.0% | |
| AGCCCGTAGTGAAGAAGAAC+CGG | + | chr6_3:17039941-17039960 | Msa0942370:intron | 50.0% | |
| !! | AAGGAGGTTCTGGAAAGAGC+CGG | + | chr6_3:17040036-17040055 | Msa0942370:intron | 50.0% |
| TGGAACTTGACGCTAACCGA+AGG | - | chr6_3:17040230-17040249 | Msa0942380:CDS | 50.0% | |
| CTACTACAGCATGGAGCGAA+TGG | - | chr6_3:17040304-17040323 | Msa0942380:CDS | 50.0% | |
| ACACCCGTTGATCGTGATGA+TGG | - | chr6_3:17040451-17040470 | Msa0942380:intron | 50.0% | |
| TTTCGTTTGAGTGGACAGCC+TGG | - | chr6_3:17040559-17040578 | Msa0942380:intron | 50.0% | |
| GTTACTGAGCTGCAATGACG+AGG | - | chr6_3:17040594-17040613 | Msa0942380:CDS | 50.0% | |
| !! | TTAGTTTGTGCTTCCCGAGG+TGG | - | chr6_3:17041243-17041262 | Msa0942380:intron | 50.0% |
| ! | TAGTTTGTGCTTCCCGAGGT+GGG | - | chr6_3:17041244-17041263 | Msa0942380:intron | 50.0% |
| AGCCAATGAAGAACTGCAGC+TGG | + | chr6_3:17041397-17041416 | Msa0942370:intron | 50.0% | |
| GGGTGGATCAGTGAGATGTA+TGG | - | chr6_3:17042100-17042119 | Msa0942380:intron | 50.0% | |
| GGACTCGTTCCTGACTACAT+TGG | + | chr6_3:17042187-17042206 | Msa0942370:intron | 50.0% | |
| ATCGTACGACCCTACATGCT+GGG | + | chr6_3:17042208-17042227 | Msa0942370:intron | 50.0% | |
| ACCAGAGTAGAGTCGAAGCA+CGG | + | chr6_3:17042253-17042272 | Msa0942370:intron | 50.0% | |
| GCTTCGACTCTACTCTGGTT+CGG | - | chr6_3:17042254-17042273 | Msa0942380:CDS | 50.0% | |
| GGTTCGTAAGTAGGATCGGT+AGG | + | chr6_3:17042532-17042551 | Msa0942370:intron | 50.0% | |
| TGGTGAAGGGACGTAAAGTC+GGG | + | chr6_3:17042566-17042585 | Msa0942370:intron | 50.0% | |
| CTGGTGAAGGGACGTAAAGT+CGG | + | chr6_3:17042567-17042586 | Msa0942370:intron | 50.0% | |
| TAGAGAGCTTCAAGTAGCGC+TGG | - | chr6_3:17043006-17043025 | Msa0942380:CDS | 50.0% | |
| !! | AGATAATGGACACCTGGGCA+GGG | + | chr6_3:17043073-17043092 | Msa0942370:intron | 50.0% |
| !! | AAGATAATGGACACCTGGGC+AGG | + | chr6_3:17043074-17043093 | Msa0942370:intron | 50.0% |
| AGCACAGTAGGACGTTAAGG+TGG | + | chr6_3:17043143-17043162 | Msa0942370:intron | 50.0% | |
| ACCTTAACGTCCTACTGTGC+TGG | - | chr6_3:17043142-17043161 | Msa0942380:CDS | 50.0% | |
| CATGGAATAGCCAGCACAGT+AGG | + | chr6_3:17043155-17043174 | Msa0942370:intron | 50.0% | |
| TGCAATGCCAGTATACTGCC+CGG | - | chr6_3:17043415-17043434 | Msa0942380:CDS | 50.0% | |
| AAACCAACCGGGCAGTATAC+TGG | + | chr6_3:17043425-17043444 | Msa0942370:intron | 50.0% | |
| ! | AGTATACTGCCCGGTTGGTT+TGG | - | chr6_3:17043424-17043443 | Msa0942380:CDS | 50.0% |
| TGAAACACGGCCAAACCAAC+CGG | + | chr6_3:17043437-17043456 | Msa0942370:intron | 50.0% | |
| GGCTGGTATCAGCTGAAACA+CGG | + | chr6_3:17043450-17043469 | Msa0942370:intron | 50.0% | |
| GCTTGGCAGTTTATGAGGTG+AGG | - | chr6_3:17043490-17043509 | Msa0942380:intron | 50.0% | |
| AGGATGTTCGCAAGCCTTGA+GGG | - | chr6_3:17043510-17043529 | Msa0942380:intron | 50.0% | |
| TAGCCTATACAGGCAAGCGA+AGG | + | chr6_3:17043569-17043588 | Msa0942370:intron | 50.0% | |
| TCGCTTGCCTGTATAGGCTA+TGG | - | chr6_3:17043569-17043588 | Msa0942380:intron | 50.0% | |
| ACAGGAGCCATAGCCTATAC+AGG | + | chr6_3:17043579-17043598 | Msa0942370:intron | 50.0% | |
| ACCAGCGCTACTTACTTGAG+AGG | - | chr6_3:17043615-17043634 | Msa0942380:CDS | 50.0% | |
| TCCGAGGAGCAATAGCGTTT+GGG | - | chr6_3:17043709-17043728 | Msa0942380:CDS | 50.0% | |
| ACCCAAACGCTATTGCTCCT+CGG | + | chr6_3:17043713-17043732 | Msa0942370:intron | 50.0% | |
| TCGGTTCAGGAACATATCCC+GGG | + | chr6_3:17044030-17044049 | Msa0942370:intron | 50.0% | |
| TGTTCGGGTCATAGAAGACG+AGG | - | chr6_3:17044553-17044572 | Msa0942380:intron | 50.0% | |
| CCAACTTTGTCGCACAGCTC+TGG | + | chr6_3:17039554-17039573 | Msa0942370:intron | 55.0% | |
| CCAGAGCTGTGCGACAAAGT+TGG | - | chr6_3:17039551-17039570 | Msa0942380:CDS | 55.0% | |
| GAGCTGTGCGACAAAGTTGG+CGG | - | chr6_3:17039554-17039573 | Msa0942380:CDS | 55.0% | |
| AGCTGTGCGACAAAGTTGGC+GGG | - | chr6_3:17039555-17039574 | Msa0942380:CDS | 55.0% | |
| !!! | CGACAAAGTTGGCGGGCTTT+TGG | - | chr6_3:17039562-17039581 | Msa0942380:CDS | 55.0% |
| CCCAGGTTATATCCCTCGTG+AGG | - | chr6_3:17039907-17039926 | Msa0942380:intron | 55.0% | |
| CCCTCACGAGGGATATAACC+TGG | + | chr6_3:17039911-17039930 | Msa0942370:intron | 55.0% | |
| CCGGTTCAATTCCCTCACGA+GGG | + | chr6_3:17039922-17039941 | Msa0942370:intron | 55.0% | |
| CCCTCGTGAGGGAATTGAAC+CGG | - | chr6_3:17039919-17039938 | Msa0942380:intron | 55.0% | |
| ! | ACCGGTTCAATTCCCTCACG+AGG | + | chr6_3:17039923-17039942 | Msa0942370:intron | 55.0% |
| ATGGTTGCCCTAAGCCAGCA+TGG | - | chr6_3:17040323-17040342 | Msa0942380:CDS | 55.0% | |
| TGAGAGGACCAATCACACCG+TGG | - | chr6_3:17041473-17041492 | Msa0942380:intron | 55.0% | |
| GAGAGGACCAATCACACCGT+GGG | - | chr6_3:17041474-17041493 | Msa0942380:intron | 55.0% | |
| CTTTGTCGCAAGCCTCTGGA+TGG | + | chr6_3:17041949-17041968 | Msa0942370:intron | 55.0% | |
| CCAACTTTGTCGCAAGCCTC+TGG | + | chr6_3:17041953-17041972 | Msa0942370:intron | 55.0% | |
| CCAGAGGCTTGCGACAAAGT+TGG | - | chr6_3:17041950-17041969 | Msa0942380:intron | 55.0% | |
| GAGGCTTGCGACAAAGTTGG+TGG | - | chr6_3:17041953-17041972 | Msa0942380:intron | 55.0% | |
| TTACTCATTTGGCGCGGCTG+AGG | - | chr6_3:17042123-17042142 | Msa0942380:intron | 55.0% | |
| AGGAACGAGTCCCAGCATGT+AGG | - | chr6_3:17042195-17042214 | Msa0942380:CDS | 55.0% | |
| GGAACGAGTCCCAGCATGTA+GGG | - | chr6_3:17042196-17042215 | Msa0942380:CDS | 55.0% | |
| GATCGTACGACCCTACATGC+TGG | + | chr6_3:17042209-17042228 | Msa0942370:intron | 55.0% | |
| ACCGTGCTTCGACTCTACTC+TGG | - | chr6_3:17042249-17042268 | Msa0942380:CDS | 55.0% | |
| GGTGAAGGGACGTAAAGTCG+GGG | + | chr6_3:17042565-17042584 | Msa0942370:intron | 55.0% | |
| AGGTTCGATCGGCTGGTGAA+GGG | + | chr6_3:17042579-17042598 | Msa0942370:intron | 55.0% | |
| TAGGTTCGATCGGCTGGTGA+AGG | + | chr6_3:17042580-17042599 | Msa0942370:intron | 55.0% | |
| CTTACGTAGGTTCGATCGGC+TGG | + | chr6_3:17042586-17042605 | Msa0942370:intron | 55.0% | |
| TTGAAAGGAGAGGGGGGAGA+GGG | + | chr6_3:17042758-17042777 | Msa0942370:intron | 55.0% | |
| TTTGAAAGGAGAGGGGGGAG+AGG | + | chr6_3:17042759-17042778 | Msa0942370:intron | 55.0% | |
| ACCTGGGCAGGGTTGCATTA+AGG | + | chr6_3:17043062-17043081 | Msa0942370:intron | 55.0% | |
| GCCAGCACAGTAGGACGTTA+AGG | + | chr6_3:17043146-17043165 | Msa0942370:intron | 55.0% | |
| !! | GTGCAGTGGCTTGTTACTGG+AGG | - | chr6_3:17043206-17043225 | Msa0942380:CDS | 55.0% |
| ATGCCAGTATACTGCCCGGT+TGG | - | chr6_3:17043419-17043438 | Msa0942380:CDS | 55.0% | |
| GAAACACGGCCAAACCAACC+GGG | + | chr6_3:17043436-17043455 | Msa0942370:intron | 55.0% | |
| GAGGATGTTCGCAAGCCTTG+AGG | - | chr6_3:17043509-17043528 | Msa0942380:intron | 55.0% | |
| ATGTTCGCAAGCCTTGAGGG+TGG | - | chr6_3:17043513-17043532 | Msa0942380:intron | 55.0% | |
| ACAGGTCTTTGCCACCCTCA+AGG | + | chr6_3:17043527-17043546 | Msa0942370:intron | 55.0% | |
| CGTCCTTCGCTTGCCTGTAT+AGG | - | chr6_3:17043563-17043582 | Msa0942380:intron | 55.0% | |
| GCCTCTCAAGTAAGTAGCGC+TGG | + | chr6_3:17043619-17043638 | Msa0942370:intron | 55.0% | |
| GTGTCCTGAGAAGATCTCCG+AGG | - | chr6_3:17043693-17043712 | Msa0942380:CDS | 55.0% | |
| TGCTCCTCGGAGATCTTCTC+AGG | + | chr6_3:17043700-17043719 | Msa0942370:intron | 55.0% | |
| CTCCGAGGAGCAATAGCGTT+TGG | - | chr6_3:17043708-17043727 | Msa0942380:CDS | 55.0% | |
| GGAGCTTCGACAAAGCAGAC+TGG | - | chr6_3:17044101-17044120 | Msa0942380:CDS | 55.0% | |
| !! | AGACTGGCGAGAGGTTGATG+TGG | - | chr6_3:17044117-17044136 | Msa0942380:CDS | 55.0% |
| ATCCGGTGGGTCTGGGAATT+TGG | + | chr6_3:17044158-17044177 | Msa0942370:intron | 55.0% | |
| CAAGAGTTGAGGGATCCGGT+GGG | + | chr6_3:17044171-17044190 | Msa0942370:intron | 55.0% | |
| TCAAGAGTTGAGGGATCCGG+TGG | + | chr6_3:17044172-17044191 | Msa0942370:intron | 55.0% | |
| TGGAAAGCAATGGACGCGAC+CGG | - | chr6_3:17044629-17044648 | Msa0942380:CDS | 55.0% | |
| AATCAACATCACGGCCGTGC+CGG | + | chr6_3:17044651-17044670 | Msa0942370:intron | 55.0% | |
| ACAAGGGGGCGAATCGTCGA+AGG | + | chr6_3:17039604-17039623 | Msa0942370:intron | 60.0% | |
| TTCGACGATTCGCCCCCTTG+TGG | - | chr6_3:17039603-17039622 | Msa0942380:CDS | 60.0% | |
| CTTGACGCTAACCGAAGGCG+AGG | - | chr6_3:17040235-17040254 | Msa0942380:CDS | 60.0% | |
| !! | GAAGCACGGTCGAGGTACTG+TGG | + | chr6_3:17042239-17042258 | Msa0942370:intron | 60.0% |
| GTAGAGTCGAAGCACGGTCG+AGG | + | chr6_3:17042247-17042266 | Msa0942370:intron | 60.0% | |
| GCCTTAATGCAACCCTGCCC+AGG | - | chr6_3:17043058-17043077 | Msa0942380:CDS | 60.0% | |
| CGACAAAGCAGACTGGCGAG+AGG | - | chr6_3:17044108-17044127 | Msa0942380:CDS | 60.0% | |
| GGCCAAATTCCCAGACCCAC+CGG | - | chr6_3:17044153-17044172 | Msa0942380:CDS | 60.0% | |
| TTGAGGGATCCGGTGGGTCT+GGG | + | chr6_3:17044165-17044184 | Msa0942370:intron | 60.0% | |
| GTTGAGGGATCCGGTGGGTC+TGG | + | chr6_3:17044166-17044185 | Msa0942370:intron | 65.0% | |
| AGCAATGGACGCGACCGGCA+CGG | - | chr6_3:17044634-17044653 | Msa0942380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 17039001 | 17044675 | 17039001 | ID=Msa0942380;Name=Msa0942380 |
| chr6_3 | mRNA | 17039001 | 17044675 | 17039001 | ID=Msa0942380-mRNA-1;Parent=Msa0942380;Name=Msa0942380-mRNA-1;_AED=0.35;_eAED=0.37;_QI=0|0|0|0.88|1|1|9|0|827 |
| chr6_3 | exon | 17044623 | 17044675 | 17044623 | ID=Msa0942380-mRNA-1:exon:5219;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17043931 | 17044174 | 17043931 | ID=Msa0942380-mRNA-1:exon:5218;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17043610 | 17043810 | 17043610 | ID=Msa0942380-mRNA-1:exon:5217;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17042978 | 17043456 | 17042978 | ID=Msa0942380-mRNA-1:exon:5216;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17042137 | 17042301 | 17042137 | ID=Msa0942380-mRNA-1:exon:5215;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17041532 | 17041775 | 17041532 | ID=Msa0942380-mRNA-1:exon:5214;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17040577 | 17040667 | 17040577 | ID=Msa0942380-mRNA-1:exon:5213;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17040170 | 17040464 | 17040170 | ID=Msa0942380-mRNA-1:exon:5212;Parent=Msa0942380-mRNA-1 |
| chr6_3 | exon | 17039001 | 17039712 | 17039001 | ID=Msa0942380-mRNA-1:exon:5211;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17044623 | 17044675 | 17044623 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17043931 | 17044174 | 17043931 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17043610 | 17043810 | 17043610 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17042978 | 17043456 | 17042978 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17042137 | 17042301 | 17042137 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17041532 | 17041775 | 17041532 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17040577 | 17040667 | 17040577 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17040170 | 17040464 | 17040170 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| chr6_3 | CDS | 17039001 | 17039712 | 17039001 | ID=Msa0942380-mRNA-1:cds;Parent=Msa0942380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
