Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642160 | XP_003606254.1 | 95.679 | 162 | 7 | 0 | 1 | 162 | 1 | 162 | 1.81e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642160 | sp|O22165|RLP24_ARATH | 68.712 | 163 | 46 | 2 | 1 | 162 | 1 | 159 | 7.60e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0642160 | 0.817181 | 3.767292e-52 | -8.615850e-47 |
| Msa0002790 | Msa0642160 | 0.822925 | 1.824426e-53 | -8.615850e-47 |
| Msa0086750 | Msa0642160 | 0.833766 | 4.417608e-56 | -8.615850e-47 |
| Msa0628410 | Msa0642160 | 0.800045 | 1.732722e-48 | -8.615850e-47 |
| Msa0642160 | Msa0648780 | 0.815228 | 1.029255e-51 | -8.615850e-47 |
| Msa0642160 | Msa0945610 | 0.818069 | 2.376348e-52 | -8.615850e-47 |
| Msa0642160 | Msa0953310 | 0.822379 | 2.445019e-53 | -8.615850e-47 |
| Msa0642160 | Msa1012740 | 0.833499 | 5.150738e-56 | -8.615850e-47 |
| Msa0642160 | Msa1072710 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0642160 | Msa1215820 | 0.813466 | 2.523722e-51 | -8.615850e-47 |
| Msa0642160 | Msa1300620 | 0.818323 | 2.080947e-52 | -8.615850e-47 |
| Msa0642160 | Msa1315890 | 0.803443 | 3.477919e-49 | -8.615850e-47 |
| Msa0120880 | Msa0642160 | 0.811252 | 7.683978e-51 | -8.615850e-47 |
| Msa0258390 | Msa0642160 | 0.836371 | 9.730220e-57 | -8.615850e-47 |
| Msa0297610 | Msa0642160 | 0.827245 | 1.739957e-54 | -8.615850e-47 |
| Msa0357900 | Msa0642160 | 0.808884 | 2.487308e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642160 | MtrunA17_Chr4g0027111 | 95.679 | 162 | 7 | 0 | 1 | 162 | 1 | 162 | 1.66e-109 | 308 |
| Msa0642160 | MtrunA17_Chr2g0321011 | 77.160 | 162 | 36 | 1 | 1 | 162 | 1 | 161 | 3.29e-87 | 252 |
| Msa0642160 | MtrunA17_Chr1g0179601 | 36.842 | 95 | 58 | 1 | 1 | 95 | 3 | 95 | 1.10e-18 | 78.2 |
| Msa0642160 | MtrunA17_Chr7g0265501 | 36.842 | 95 | 58 | 1 | 1 | 95 | 3 | 95 | 1.38e-18 | 77.8 |
| Msa0642160 | MtrunA17_Chr7g0265491 | 36.842 | 95 | 58 | 1 | 1 | 95 | 3 | 95 | 1.38e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0642160 | AT2G44860.2 | 68.712 | 163 | 46 | 2 | 1 | 162 | 1 | 159 | 7.72e-80 | 234 |
| Msa0642160 | AT2G44860.1 | 68.712 | 163 | 46 | 2 | 1 | 162 | 1 | 159 | 7.72e-80 | 234 |
| Msa0642160 | AT3G53020.1 | 36.842 | 95 | 58 | 1 | 1 | 95 | 3 | 95 | 1.24e-17 | 75.9 |
| Msa0642160 | AT2G36620.1 | 36.842 | 95 | 58 | 1 | 1 | 95 | 3 | 95 | 3.47e-17 | 74.7 |
Find 75 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTCGTTAAGAAATTTC+TGG | 0.226490 | 4_3:-43496431 | Msa0642160:three_prime_UTR |
| GTGTGGCCGCCACTTATGTT+AGG | 0.247021 | 4_3:+43499076 | None:intergenic |
| GCTTGGATCTTAGCAATCTT+TGG | 0.263538 | 4_3:+43496986 | None:intergenic |
| GCGAAAGCGTTGATTTAGTT+TGG | 0.304358 | 4_3:-43498896 | Msa0642160:five_prime_UTR |
| GGCCACACCGCCCCGACATT+AGG | 0.321803 | 4_3:-43499061 | Msa0642160:five_prime_UTR |
| GGAATCCTCGGAAAGTAAAA+TGG | 0.330997 | 4_3:-43497235 | Msa0642160:CDS |
| ACGATTCTCCTCTGCTTGTT+GGG | 0.350782 | 4_3:+43496720 | None:intergenic |
| GCCACACCGCCCCGACATTA+GGG | 0.361441 | 4_3:-43499060 | Msa0642160:five_prime_UTR |
| AAATTCATCATTCACATTGA+TGG | 0.363037 | 4_3:+43496629 | None:intergenic |
| ATGCTGCATCCTCCTTGATT+AGG | 0.367570 | 4_3:-43496677 | Msa0642160:three_prime_UTR |
| CACGATTCTCCTCTGCTTGT+TGG | 0.372186 | 4_3:+43496719 | None:intergenic |
| TATGTCGTTAAGAAATTTCT+GGG | 0.387677 | 4_3:-43496430 | Msa0642160:three_prime_UTR |
| GTGATTCACCCCTGCTGGCT+TGG | 0.391988 | 4_3:+43496969 | None:intergenic |
| CAGATGGAGCTTTAAGTAGA+TGG | 0.394379 | 4_3:+43496779 | None:intergenic |
| GTGAATCACACTACGCTAAC+AGG | 0.427056 | 4_3:-43496955 | Msa0642160:intron |
| AATTCATCATTCACATTGAT+GGG | 0.429549 | 4_3:+43496630 | None:intergenic |
| TCTACTGTATATCCTGGTCA+TGG | 0.437777 | 4_3:-43498836 | Msa0642160:CDS |
| GTCCAAGGAGACTTCATCTT+AGG | 0.446193 | 4_3:+43496495 | None:intergenic |
| TAAAATGGACCAAGGCATAT+AGG | 0.453354 | 4_3:-43497220 | Msa0642160:CDS |
| TAGCATCATTACGAACAAAC+TGG | 0.456216 | 4_3:+43498810 | None:intergenic |
| TGTTCTTCTACTGTATATCC+TGG | 0.466156 | 4_3:-43498842 | Msa0642160:CDS |
| TCATCTCCTCCTCATTCCTC+AGG | 0.468144 | 4_3:-43499030 | Msa0642160:intron |
| TGATGATAAACCCTAATGTC+GGG | 0.474619 | 4_3:+43499050 | None:intergenic |
| TCCATCTGCTGTGCTTGCGC+CGG | 0.476430 | 4_3:-43496764 | Msa0642160:CDS |
| TGCCTAAGATGAAGTCTCCT+TGG | 0.496927 | 4_3:-43496497 | Msa0642160:three_prime_UTR |
| GTGCACCCGCCTATATGCCT+TGG | 0.497127 | 4_3:+43497211 | None:intergenic |
| TTGCTAAGATCCAAGCCAGC+AGG | 0.500416 | 4_3:-43496979 | Msa0642160:CDS |
| GATCTTAGCAATCTTTGGAA+TGG | 0.502280 | 4_3:+43496991 | None:intergenic |
| AGATTCCTGTCGTATCTCTC+AGG | 0.514561 | 4_3:+43497034 | None:intergenic |
| TGTGGCCGCCACTTATGTTA+GGG | 0.515450 | 4_3:+43499077 | None:intergenic |
| TTGTAACTTAAGCCTAATCA+AGG | 0.516618 | 4_3:+43496665 | None:intergenic |
| TCCGGCGCAAGCACAGCAGA+TGG | 0.523709 | 4_3:+43496763 | None:intergenic |
| AAATGAGATTAGAGAAGTGT+TGG | 0.527939 | 4_3:-43498868 | Msa0642160:CDS |
| CGATAGATTCAAGACGTCCA+AGG | 0.534557 | 4_3:+43496480 | None:intergenic |
| ACCGCCACCTTGATCTTCTC+CGG | 0.535052 | 4_3:+43496745 | None:intergenic |
| CAAGAAGCAGAAGGTGCAGA+AGG | 0.543186 | 4_3:-43496830 | Msa0642160:CDS |
| GCAGAAGGTGCAGAAGGAAG+CGG | 0.549263 | 4_3:-43496824 | Msa0642160:CDS |
| GTAGTGTGATTCACCCCTGC+TGG | 0.551585 | 4_3:+43496964 | None:intergenic |
| ATGATGATAAACCCTAATGT+CGG | 0.553144 | 4_3:+43499049 | None:intergenic |
| CCTCGTAACCCTAACATAAG+TGG | 0.554554 | 4_3:-43499085 | Msa0642160:five_prime_UTR |
| CTACTGTATATCCTGGTCAT+GGG | 0.555707 | 4_3:-43498835 | Msa0642160:CDS |
| TCAAAATGAAGAGGAATCCT+CGG | 0.559408 | 4_3:-43497247 | Msa0642160:CDS |
| GTTTGTTCGTAATGATGCTA+AGG | 0.562939 | 4_3:-43498807 | Msa0642160:intron |
| ACCCTAATGTCGGGGCGGTG+TGG | 0.567042 | 4_3:+43499059 | None:intergenic |
| AAAGCGTTGATTTAGTTTGG+AGG | 0.568467 | 4_3:-43498893 | Msa0642160:five_prime_UTR |
| ACAAGAACTTCAAAATGAAG+AGG | 0.570899 | 4_3:-43497256 | Msa0642160:CDS |
| GAAGATGAACCTGAGGAATG+AGG | 0.572909 | 4_3:+43499021 | None:intergenic |
| CAATCTTTGGAATGGCCTTG+AGG | 0.574848 | 4_3:+43496999 | None:intergenic |
| GCTTGCGCCGGAGAAGATCA+AGG | 0.582872 | 4_3:-43496752 | Msa0642160:CDS |
| GCCGGAGAAGATCAAGGTGG+CGG | 0.584956 | 4_3:-43496746 | Msa0642160:CDS |
| GGCGGTTTCCCAACAAGCAG+AGG | 0.588475 | 4_3:-43496728 | Msa0642160:CDS |
| AAGGCATATAGGCGGGTGCA+CGG | 0.588735 | 4_3:-43497209 | Msa0642160:CDS |
| ATGGACCAAGGCATATAGGC+GGG | 0.589542 | 4_3:-43497216 | Msa0642160:CDS |
| ATATAGGCGGGTGCACGGAA+AGG | 0.591224 | 4_3:-43497204 | Msa0642160:CDS |
| ATCACTAACATAATTCTCAA+AGG | 0.592958 | 4_3:+43496591 | None:intergenic |
| GATGAGCGGCAAGAAGCAGA+AGG | 0.613802 | 4_3:-43496839 | Msa0642160:CDS |
| TGCTAAGATCCAAGCCAGCA+GGG | 0.615872 | 4_3:-43496978 | Msa0642160:CDS |
| TCTTACTGAGGAAGTCCTCA+AGG | 0.619553 | 4_3:-43497014 | Msa0642160:CDS |
| AGCAGAGGAGAATCGTGTCA+TGG | 0.619555 | 4_3:-43496713 | Msa0642160:CDS |
| CCACTTATGTTAGGGTTACG+AGG | 0.623177 | 4_3:+43499085 | None:intergenic |
| ACAAACTGGATCCCATGACC+AGG | 0.640213 | 4_3:+43498824 | None:intergenic |
| ACAGACCTGAGAGATACGAC+AGG | 0.640425 | 4_3:-43497039 | Msa0642160:CDS |
| TTAATCTCCCATAGGATGAG+CGG | 0.649799 | 4_3:-43496853 | Msa0642160:intron |
| TAATCAAGGAGGATGCAGCA+TGG | 0.653262 | 4_3:+43496679 | None:intergenic |
| GCTAAGATCCAAGCCAGCAG+GGG | 0.666858 | 4_3:-43496977 | Msa0642160:CDS |
| GATGATAAACCCTAATGTCG+GGG | 0.670518 | 4_3:+43499051 | None:intergenic |
| GATGAACCTGAGGAATGAGG+AGG | 0.674826 | 4_3:+43499024 | None:intergenic |
| AATGGACCAAGGCATATAGG+CGG | 0.680334 | 4_3:-43497217 | Msa0642160:CDS |
| TCGGAAAGTAAAATGGACCA+AGG | 0.688428 | 4_3:-43497228 | Msa0642160:CDS |
| CGTAACCCTAACATAAGTGG+CGG | 0.694238 | 4_3:-43499082 | Msa0642160:five_prime_UTR |
| GCACGGAAAGGACATGACAC+AGG | 0.700411 | 4_3:-43497192 | Msa0642160:intron |
| TAACTTAAGCCTAATCAAGG+AGG | 0.702718 | 4_3:+43496668 | None:intergenic |
| GATAAACCCTAATGTCGGGG+CGG | 0.703535 | 4_3:+43499054 | None:intergenic |
| ATACGACAGGAATCTTACTG+AGG | 0.719986 | 4_3:-43497026 | Msa0642160:CDS |
| TGCGCCGGAGAAGATCAAGG+TGG | 0.789068 | 4_3:-43496749 | Msa0642160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGAAAATTAATAG+CGG | - | chr4_3:43496776-43496795 | Msa0642160:CDS | 10.0% |
| !!! | TTTGCTATAAAAATTAAAAA+TGG | - | chr4_3:43497003-43497022 | Msa0642160:CDS | 10.0% |
| !!! | TTTTATATATAATTGACTTA+GGG | - | chr4_3:43497352-43497371 | Msa0642160:intron | 10.0% |
| !! | TTACATATAAAAGATAAATA+AGG | + | chr4_3:43498119-43498138 | None:intergenic | 10.0% |
| !!! | ATTTATCTTTTATATGTAAA+TGG | - | chr4_3:43498120-43498139 | Msa0642160:intron | 10.0% |
| !! | AAGTTAAAATTCGATTAAAT+GGG | + | chr4_3:43496579-43496598 | None:intergenic | 15.0% |
| !! | AAAGTTAAAATTCGATTAAA+TGG | + | chr4_3:43496580-43496599 | None:intergenic | 15.0% |
| !!! | ATTACTTTTACATATACAAT+AGG | + | chr4_3:43496966-43496985 | None:intergenic | 15.0% |
| !!! | ATTATGCTAATTTTGTTATT+AGG | - | chr4_3:43497108-43497127 | Msa0642160:intron | 15.0% |
| !!! | TTATGCTAATTTTGTTATTA+GGG | - | chr4_3:43497109-43497128 | Msa0642160:intron | 15.0% |
| !! | CTAAGTCAATTATATATAAA+AGG | + | chr4_3:43497353-43497372 | None:intergenic | 15.0% |
| !!! | CTTTTATATATAATTGACTT+AGG | - | chr4_3:43497351-43497370 | Msa0642160:intron | 15.0% |
| !!! | TAGTGAATTTTGATGAATTA+AGG | - | chr4_3:43496817-43496836 | Msa0642160:CDS | 20.0% |
| !!! | TATTTTGCTCATTTATGAAT+CGG | - | chr4_3:43497261-43497280 | Msa0642160:CDS | 20.0% |
| !!! | TTTTCAAAATGAGTTGAAAA+AGG | + | chr4_3:43497481-43497500 | None:intergenic | 20.0% |
| !! | AAAAAGTTGTTTATCCAAAT+AGG | - | chr4_3:43497599-43497618 | Msa0642160:intron | 20.0% |
| !!! | ACTTTTTACGTTTTTGTTTT+AGG | - | chr4_3:43498414-43498433 | Msa0642160:intron | 20.0% |
| !! | AAAACTTATACTAAAGCTTT+GGG | + | chr4_3:43498607-43498626 | None:intergenic | 20.0% |
| !! | AAAAACTTATACTAAAGCTT+TGG | + | chr4_3:43498608-43498627 | None:intergenic | 20.0% |
| !!! | ATGAATTTTTGAAAGAGTTT+TGG | - | chr4_3:43498892-43498911 | Msa0642160:five_prime_UTR | 20.0% |
| ! | TGGTTATAAATTGAAGAGAT+TGG | + | chr4_3:43496520-43496539 | None:intergenic | 25.0% |
| ! | ATTGTATAATCGTTGAGTAA+TGG | + | chr4_3:43496540-43496559 | None:intergenic | 25.0% |
| ! | TTCGATTAAATGGGAAATTA+AGG | + | chr4_3:43496570-43496589 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr4_3:43497063-43497082 | Msa0642160:CDS | 25.0% |
| ! | ACAAAATTAGCATAATGTAG+TGG | + | chr4_3:43497104-43497123 | None:intergenic | 25.0% |
| !! | CTCGAAAGAACAAAATTTTA+GGG | - | chr4_3:43497187-43497206 | Msa0642160:intron | 25.0% |
| ! | GATTCATAAATGAGCAAAAT+AGG | + | chr4_3:43497262-43497281 | None:intergenic | 25.0% |
| ! | GTTGCGTATACATAAATAAA+TGG | + | chr4_3:43497326-43497345 | None:intergenic | 25.0% |
| ! | TTATTTATGTATACGCAACA+TGG | - | chr4_3:43497327-43497346 | Msa0642160:intron | 25.0% |
| !! | TTGAGTTTTTGTACTAGTAT+TGG | - | chr4_3:43497394-43497413 | Msa0642160:intron | 25.0% |
| !!! | TTTTGAAGTTTTGTGAAACT+AGG | - | chr4_3:43497799-43497818 | Msa0642160:intron | 25.0% |
| ! | GAGAATTTAGAGATTTAGAT+GGG | - | chr4_3:43497957-43497976 | Msa0642160:intron | 25.0% |
| ! | GGATAATCAATAAACTAAAC+AGG | + | chr4_3:43498098-43498117 | None:intergenic | 25.0% |
| !! | ATCTTTTATATGTAAATGGC+AGG | - | chr4_3:43498124-43498143 | Msa0642160:intron | 25.0% |
| ! | TAATGAGACTAGGAAATTAA+GGG | + | chr4_3:43498357-43498376 | None:intergenic | 25.0% |
| ! | ATAATGAGACTAGGAAATTA+AGG | + | chr4_3:43498358-43498377 | None:intergenic | 25.0% |
| ! | AATAACACAATAATGAGACT+AGG | + | chr4_3:43498367-43498386 | None:intergenic | 25.0% |
| !!! | TATTGTGTTATTTACTCTCT+TGG | - | chr4_3:43498375-43498394 | Msa0642160:intron | 25.0% |
| ! | AATTCATCATTCACATTGAT+GGG | + | chr4_3:43498879-43498898 | None:intergenic | 25.0% |
| ! | AAATTCATCATTCACATTGA+TGG | + | chr4_3:43498880-43498899 | None:intergenic | 25.0% |
| ! | ATCACTAACATAATTCTCAA+AGG | + | chr4_3:43498918-43498937 | None:intergenic | 25.0% |
| !!! | GTGATGTTGTTTTTTGTTTT+TGG | - | chr4_3:43498933-43498952 | Msa0642160:intron | 25.0% |
| ! | TTATGTCGTTAAGAAATTTC+TGG | - | chr4_3:43499075-43499094 | Msa0642160:five_prime_UTR | 25.0% |
| ! | TATGTCGTTAAGAAATTTCT+GGG | - | chr4_3:43499076-43499095 | Msa0642160:five_prime_UTR | 25.0% |
| ATGATGATAAACCCTAATGT+CGG | + | chr4_3:43496460-43496479 | None:intergenic | 30.0% | |
| AAATGGGAAATTAAGGATGA+TGG | + | chr4_3:43496563-43496582 | None:intergenic | 30.0% | |
| ! | AAATGAGATTAGAGAAGTGT+TGG | - | chr4_3:43496638-43496657 | Msa0642160:three_prime_UTR | 30.0% |
| TGTTATAGCTCTTGTTGAAT+TGG | - | chr4_3:43496740-43496759 | Msa0642160:CDS | 30.0% | |
| AAAATTAATAGCGGTGATAG+AGG | - | chr4_3:43496785-43496804 | Msa0642160:CDS | 30.0% | |
| AAATTAATAGCGGTGATAGA+GGG | - | chr4_3:43496786-43496805 | Msa0642160:CDS | 30.0% | |
| TGATGAATTAAGGATCTGTT+TGG | - | chr4_3:43496827-43496846 | Msa0642160:CDS | 30.0% | |
| AATTAAGGATCTGTTTGGAT+TGG | - | chr4_3:43496832-43496851 | Msa0642160:CDS | 30.0% | |
| !! | GCTGTTTTCATAAGTTATCT+TGG | + | chr4_3:43496944-43496963 | None:intergenic | 30.0% |
| ! | TGTAGTGGTTTTCATACTTA+TGG | + | chr4_3:43497089-43497108 | None:intergenic | 30.0% |
| !!! | TTTTGTTATTAGGGCGATAA+TGG | - | chr4_3:43497118-43497137 | Msa0642160:intron | 30.0% |
| AGCTAAATAAACTGGCATAA+TGG | + | chr4_3:43497144-43497163 | None:intergenic | 30.0% | |
| ! | GCTCGAAAGAACAAAATTTT+AGG | - | chr4_3:43497186-43497205 | Msa0642160:intron | 30.0% |
| TCAAATAAGTCATTCCAAAC+AGG | + | chr4_3:43497378-43497397 | None:intergenic | 30.0% | |
| ! | GGCTTGTGAAAATTTTCATA+AGG | + | chr4_3:43497460-43497479 | None:intergenic | 30.0% |
| ! | TTGAAGTATTAAGGCCTATT+TGG | + | chr4_3:43497616-43497635 | None:intergenic | 30.0% |
| ! | GCATAGCAATTGAAGTATTA+AGG | + | chr4_3:43497625-43497644 | None:intergenic | 30.0% |
| ! | TTTTGTGATCCAGATTGTTT+GGG | + | chr4_3:43497874-43497893 | None:intergenic | 30.0% |
| ! | ATTTTGTGATCCAGATTGTT+TGG | + | chr4_3:43497875-43497894 | None:intergenic | 30.0% |
| CGAGAATTTAGAGATTTAGA+TGG | - | chr4_3:43497956-43497975 | Msa0642160:intron | 30.0% | |
| !!! | TCTTCATTTTGAAGTTCTTG+TGG | + | chr4_3:43498251-43498270 | None:intergenic | 30.0% |
| ACAAGAACTTCAAAATGAAG+AGG | - | chr4_3:43498250-43498269 | Msa0642160:intron | 30.0% | |
| ! | TGTTATTTACTCTCTTGGTT+TGG | - | chr4_3:43498380-43498399 | Msa0642160:intron | 30.0% |
| TTGTAACTTAAGCCTAATCA+AGG | + | chr4_3:43498844-43498863 | None:intergenic | 30.0% | |
| TGATGATAAACCCTAATGTC+GGG | + | chr4_3:43496459-43496478 | None:intergenic | 35.0% | |
| TTGAAGAGATTGGTGAAGAA+GGG | + | chr4_3:43496510-43496529 | None:intergenic | 35.0% | |
| ATTGAAGAGATTGGTGAAGA+AGG | + | chr4_3:43496511-43496530 | None:intergenic | 35.0% | |
| !! | AAAGCGTTGATTTAGTTTGG+AGG | - | chr4_3:43496613-43496632 | Msa0642160:three_prime_UTR | 35.0% |
| TGTTCTTCTACTGTATATCC+TGG | - | chr4_3:43496664-43496683 | Msa0642160:three_prime_UTR | 35.0% | |
| TAGCATCATTACGAACAAAC+TGG | + | chr4_3:43496699-43496718 | None:intergenic | 35.0% | |
| GTTTGTTCGTAATGATGCTA+AGG | - | chr4_3:43496699-43496718 | Msa0642160:exon | 35.0% | |
| TTTCATACTTATGGCCTGTT+TGG | + | chr4_3:43497080-43497099 | None:intergenic | 35.0% | |
| CATCAGCTAGCTAAATAAAC+TGG | + | chr4_3:43497152-43497171 | None:intergenic | 35.0% | |
| AATGAGCAAAATAGGTCATC+TGG | + | chr4_3:43497254-43497273 | None:intergenic | 35.0% | |
| !!! | GTAGTTTTGTGAGAAGGTTT+GGG | - | chr4_3:43497418-43497437 | Msa0642160:intron | 35.0% |
| !!! | TTTTTTGCAGCTTATAGCAC+AGG | + | chr4_3:43497584-43497603 | None:intergenic | 35.0% |
| GAAATAGTAGATAGTGCTAC+AGG | + | chr4_3:43497663-43497682 | None:intergenic | 35.0% | |
| !! | AGTGGATTGCAGAAAAATAG+CGG | + | chr4_3:43497708-43497727 | None:intergenic | 35.0% |
| ! | AAATACAGTGCTGTTAACAG+TGG | + | chr4_3:43497726-43497745 | None:intergenic | 35.0% |
| AGGACAAAGATTTCATGTCA+GGG | + | chr4_3:43497842-43497861 | None:intergenic | 35.0% | |
| TAGGACAAAGATTTCATGTC+AGG | + | chr4_3:43497843-43497862 | None:intergenic | 35.0% | |
| AATCTCTAAATTCTCGAGCA+AGG | + | chr4_3:43497952-43497971 | None:intergenic | 35.0% | |
| ATTGGAGTGATAAGGTGATT+TGG | + | chr4_3:43498018-43498037 | None:intergenic | 35.0% | |
| TCAAAATGAAGAGGAATCCT+CGG | - | chr4_3:43498259-43498278 | Msa0642160:intron | 35.0% | |
| TAAAATGGACCAAGGCATAT+AGG | - | chr4_3:43498286-43498305 | Msa0642160:intron | 35.0% | |
| AGACTAGGAAATTAAGGGAA+AGG | + | chr4_3:43498352-43498371 | None:intergenic | 35.0% | |
| ! | GATCTTAGCAATCTTTGGAA+TGG | + | chr4_3:43498518-43498537 | None:intergenic | 35.0% |
| TCTGACATTTAATCTCCCAT+AGG | - | chr4_3:43498645-43498664 | Msa0642160:intron | 35.0% | |
| TAACTTAAGCCTAATCAAGG+AGG | + | chr4_3:43498841-43498860 | None:intergenic | 35.0% | |
| GATGATAAACCCTAATGTCG+GGG | + | chr4_3:43496458-43496477 | None:intergenic | 40.0% | |
| !! | GCGAAAGCGTTGATTTAGTT+TGG | - | chr4_3:43496610-43496629 | Msa0642160:three_prime_UTR | 40.0% |
| TCTACTGTATATCCTGGTCA+TGG | - | chr4_3:43496670-43496689 | Msa0642160:three_prime_UTR | 40.0% | |
| CTACTGTATATCCTGGTCAT+GGG | - | chr4_3:43496671-43496690 | Msa0642160:three_prime_UTR | 40.0% | |
| ! | TAATTGACTTAGGGCCTGTT+TGG | - | chr4_3:43497361-43497380 | Msa0642160:intron | 40.0% |
| !!! | ATTGGCGTAGTTTTGTGAGA+AGG | - | chr4_3:43497412-43497431 | Msa0642160:intron | 40.0% |
| !!! | CGTAGTTTTGTGAGAAGGTT+TGG | - | chr4_3:43497417-43497436 | Msa0642160:intron | 40.0% |
| AGTAGCTATTCACTCTCTAC+AGG | - | chr4_3:43497758-43497777 | Msa0642160:intron | 40.0% | |
| CTCTCTACAGGTTCTTTCTT+CGG | - | chr4_3:43497770-43497789 | Msa0642160:intron | 40.0% | |
| CCTTATCACTCCAATCTAGA+CGG | - | chr4_3:43498023-43498042 | Msa0642160:intron | 40.0% | |
| CTTATCACTCCAATCTAGAC+GGG | - | chr4_3:43498024-43498043 | Msa0642160:intron | 40.0% | |
| TTGTGTCGCAGGATCAAATT+GGG | - | chr4_3:43498061-43498080 | Msa0642160:intron | 40.0% | |
| GGAATCCTCGGAAAGTAAAA+TGG | - | chr4_3:43498271-43498290 | Msa0642160:intron | 40.0% | |
| ! | TTGGTCCATTTTACTTTCCG+AGG | + | chr4_3:43498279-43498298 | None:intergenic | 40.0% |
| TCGGAAAGTAAAATGGACCA+AGG | - | chr4_3:43498278-43498297 | Msa0642160:intron | 40.0% | |
| ! | GCGTTTTCTCTCAAACTCAA+AGG | + | chr4_3:43498446-43498465 | None:intergenic | 40.0% |
| ATACGACAGGAATCTTACTG+AGG | - | chr4_3:43498480-43498499 | Msa0642160:intron | 40.0% | |
| GCTTGGATCTTAGCAATCTT+TGG | + | chr4_3:43498523-43498542 | None:intergenic | 40.0% | |
| TTAATCTCCCATAGGATGAG+CGG | - | chr4_3:43498653-43498672 | Msa0642160:intron | 40.0% | |
| !! | CAGATGGAGCTTTAAGTAGA+TGG | + | chr4_3:43498730-43498749 | None:intergenic | 40.0% |
| CGTAACCCTAACATAAGTGG+CGG | - | chr4_3:43496424-43496443 | Msa0642160:three_prime_UTR | 45.0% | |
| GAAGATGAACCTGAGGAATG+AGG | + | chr4_3:43496488-43496507 | None:intergenic | 45.0% | |
| AAGAAGGGAAGATGAACCTG+AGG | + | chr4_3:43496495-43496514 | None:intergenic | 45.0% | |
| TAGCTGATGTTAGCGTGTAG+AGG | - | chr4_3:43497163-43497182 | Msa0642160:intron | 45.0% | |
| AGCTGATGTTAGCGTGTAGA+GGG | - | chr4_3:43497164-43497183 | Msa0642160:intron | 45.0% | |
| GATTGTTTGGGTAGGCAGTT+AGG | + | chr4_3:43497862-43497881 | None:intergenic | 45.0% | |
| AACTGCCTACCCAAACAATC+TGG | - | chr4_3:43497862-43497881 | Msa0642160:intron | 45.0% | |
| GTGATCCAGATTGTTTGGGT+AGG | + | chr4_3:43497870-43497889 | None:intergenic | 45.0% | |
| CCGTCTAGATTGGAGTGATA+AGG | + | chr4_3:43498026-43498045 | None:intergenic | 45.0% | |
| CTTGTGTCGCAGGATCAAAT+TGG | - | chr4_3:43498060-43498079 | Msa0642160:intron | 45.0% | |
| GCTACACTTCACACTACATG+TGG | - | chr4_3:43498168-43498187 | Msa0642160:intron | 45.0% | |
| AATGGACCAAGGCATATAGG+CGG | - | chr4_3:43498289-43498308 | Msa0642160:intron | 45.0% | |
| AGATTCCTGTCGTATCTCTC+AGG | + | chr4_3:43498475-43498494 | None:intergenic | 45.0% | |
| TCTTACTGAGGAAGTCCTCA+AGG | - | chr4_3:43498492-43498511 | Msa0642160:intron | 45.0% | |
| !! | CAATCTTTGGAATGGCCTTG+AGG | + | chr4_3:43498510-43498529 | None:intergenic | 45.0% |
| GTGAATCACACTACGCTAAC+AGG | - | chr4_3:43498551-43498570 | Msa0642160:intron | 45.0% | |
| ACGATTCTCCTCTGCTTGTT+GGG | + | chr4_3:43498789-43498808 | None:intergenic | 45.0% | |
| TAATCAAGGAGGATGCAGCA+TGG | + | chr4_3:43498830-43498849 | None:intergenic | 45.0% | |
| ATGCTGCATCCTCCTTGATT+AGG | - | chr4_3:43498829-43498848 | Msa0642160:CDS | 45.0% | |
| TGCCTAAGATGAAGTCTCCT+TGG | - | chr4_3:43499009-43499028 | Msa0642160:intron | 45.0% | |
| GTCCAAGGAGACTTCATCTT+AGG | + | chr4_3:43499014-43499033 | None:intergenic | 45.0% | |
| CGATAGATTCAAGACGTCCA+AGG | + | chr4_3:43499029-43499048 | None:intergenic | 45.0% | |
| TGTGGCCGCCACTTATGTTA+GGG | + | chr4_3:43496432-43496451 | None:intergenic | 50.0% | |
| GATAAACCCTAATGTCGGGG+CGG | + | chr4_3:43496455-43496474 | None:intergenic | 50.0% | |
| TCATCTCCTCCTCATTCCTC+AGG | - | chr4_3:43496476-43496495 | Msa0642160:three_prime_UTR | 50.0% | |
| GATGAACCTGAGGAATGAGG+AGG | + | chr4_3:43496485-43496504 | None:intergenic | 50.0% | |
| ACAAACTGGATCCCATGACC+AGG | + | chr4_3:43496685-43496704 | None:intergenic | 50.0% | |
| ATGTCAGGGCTGACGATTCA+GGG | + | chr4_3:43497828-43497847 | None:intergenic | 50.0% | |
| GCAAGTAAGCCCGTCTAGAT+TGG | + | chr4_3:43498036-43498055 | None:intergenic | 50.0% | |
| TTGATCCTGCGACACAAGTC+AGG | + | chr4_3:43498058-43498077 | None:intergenic | 50.0% | |
| ATGGACCAAGGCATATAGGC+GGG | - | chr4_3:43498290-43498309 | Msa0642160:intron | 50.0% | |
| ACAGACCTGAGAGATACGAC+AGG | - | chr4_3:43498467-43498486 | Msa0642160:intron | 50.0% | |
| TTGCTAAGATCCAAGCCAGC+AGG | - | chr4_3:43498527-43498546 | Msa0642160:intron | 50.0% | |
| TGCTAAGATCCAAGCCAGCA+GGG | - | chr4_3:43498528-43498547 | Msa0642160:intron | 50.0% | |
| CTTCTTGCCGCTCATCCTAT+GGG | + | chr4_3:43498663-43498682 | None:intergenic | 50.0% | |
| ! | CAAGAAGCAGAAGGTGCAGA+AGG | - | chr4_3:43498676-43498695 | Msa0642160:intron | 50.0% |
| CACGATTCTCCTCTGCTTGT+TGG | + | chr4_3:43498790-43498809 | None:intergenic | 50.0% | |
| AGCAGAGGAGAATCGTGTCA+TGG | - | chr4_3:43498793-43498812 | Msa0642160:intron | 50.0% | |
| GTGTGGCCGCCACTTATGTT+AGG | + | chr4_3:43496433-43496452 | None:intergenic | 55.0% | |
| TGTCAGGGCTGACGATTCAG+GGG | + | chr4_3:43497827-43497846 | None:intergenic | 55.0% | |
| CATGTCAGGGCTGACGATTC+AGG | + | chr4_3:43497829-43497848 | None:intergenic | 55.0% | |
| ! | ACTTGCCTGACTTGTGTCGC+AGG | - | chr4_3:43498050-43498069 | Msa0642160:intron | 55.0% |
| AAGGCATATAGGCGGGTGCA+CGG | - | chr4_3:43498297-43498316 | Msa0642160:intron | 55.0% | |
| ATATAGGCGGGTGCACGGAA+AGG | - | chr4_3:43498302-43498321 | Msa0642160:intron | 55.0% | |
| GCACGGAAAGGACATGACAC+AGG | - | chr4_3:43498314-43498333 | Msa0642160:intron | 55.0% | |
| GCTAAGATCCAAGCCAGCAG+GGG | - | chr4_3:43498529-43498548 | Msa0642160:intron | 55.0% | |
| GTAGTGTGATTCACCCCTGC+TGG | + | chr4_3:43498545-43498564 | None:intergenic | 55.0% | |
| GCTTCTTGCCGCTCATCCTA+TGG | + | chr4_3:43498664-43498683 | None:intergenic | 55.0% | |
| GATGAGCGGCAAGAAGCAGA+AGG | - | chr4_3:43498667-43498686 | Msa0642160:intron | 55.0% | |
| ! | GCAGAAGGTGCAGAAGGAAG+CGG | - | chr4_3:43498682-43498701 | Msa0642160:intron | 55.0% |
| ACCGCCACCTTGATCTTCTC+CGG | + | chr4_3:43498764-43498783 | None:intergenic | 55.0% | |
| GTGCACCCGCCTATATGCCT+TGG | + | chr4_3:43498298-43498317 | None:intergenic | 60.0% | |
| ! | GTGATTCACCCCTGCTGGCT+TGG | + | chr4_3:43498540-43498559 | None:intergenic | 60.0% |
| TCCATCTGCTGTGCTTGCGC+CGG | - | chr4_3:43498742-43498761 | Msa0642160:intron | 60.0% | |
| GCTTGCGCCGGAGAAGATCA+AGG | - | chr4_3:43498754-43498773 | Msa0642160:intron | 60.0% | |
| TGCGCCGGAGAAGATCAAGG+TGG | - | chr4_3:43498757-43498776 | Msa0642160:intron | 60.0% | |
| GCCGGAGAAGATCAAGGTGG+CGG | - | chr4_3:43498760-43498779 | Msa0642160:intron | 60.0% | |
| GGCGGTTTCCCAACAAGCAG+AGG | - | chr4_3:43498778-43498797 | Msa0642160:intron | 60.0% | |
| GCCACACCGCCCCGACATTA+GGG | - | chr4_3:43496446-43496465 | Msa0642160:three_prime_UTR | 65.0% | |
| ACCCTAATGTCGGGGCGGTG+TGG | + | chr4_3:43496450-43496469 | None:intergenic | 65.0% | |
| TCCGGCGCAAGCACAGCAGA+TGG | + | chr4_3:43498746-43498765 | None:intergenic | 65.0% | |
| GGCCACACCGCCCCGACATT+AGG | - | chr4_3:43496445-43496464 | Msa0642160:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 43496424 | 43499104 | 43496424 | ID=Msa0642160;Name=Msa0642160 |
| chr4_3 | mRNA | 43496424 | 43499104 | 43496424 | ID=Msa0642160-mRNA-1;Parent=Msa0642160;Name=Msa0642160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=103|1|1|1|0.75|0.6|5|281|162 |
| chr4_3 | exon | 43496424 | 43496861 | 43496424 | ID=Msa0642160-mRNA-1:exon:9883;Parent=Msa0642160-mRNA-1 |
| chr4_3 | exon | 43496956 | 43497092 | 43496956 | ID=Msa0642160-mRNA-1:exon:9882;Parent=Msa0642160-mRNA-1 |
| chr4_3 | exon | 43497193 | 43497306 | 43497193 | ID=Msa0642160-mRNA-1:exon:9881;Parent=Msa0642160-mRNA-1 |
| chr4_3 | exon | 43498808 | 43498917 | 43498808 | ID=Msa0642160-mRNA-1:exon:9880;Parent=Msa0642160-mRNA-1 |
| chr4_3 | exon | 43499031 | 43499104 | 43499031 | ID=Msa0642160-mRNA-1:exon:9879;Parent=Msa0642160-mRNA-1 |
| chr4_3 | five_prime_UTR | 43499031 | 43499104 | 43499031 | ID=Msa0642160-mRNA-1:five_prime_utr;Parent=Msa0642160-mRNA-1 |
| chr4_3 | five_prime_UTR | 43498889 | 43498917 | 43498889 | ID=Msa0642160-mRNA-1:five_prime_utr;Parent=Msa0642160-mRNA-1 |
| chr4_3 | CDS | 43498808 | 43498888 | 43498808 | ID=Msa0642160-mRNA-1:cds;Parent=Msa0642160-mRNA-1 |
| chr4_3 | CDS | 43497193 | 43497306 | 43497193 | ID=Msa0642160-mRNA-1:cds;Parent=Msa0642160-mRNA-1 |
| chr4_3 | CDS | 43496956 | 43497092 | 43496956 | ID=Msa0642160-mRNA-1:cds;Parent=Msa0642160-mRNA-1 |
| chr4_3 | CDS | 43496705 | 43496861 | 43496705 | ID=Msa0642160-mRNA-1:cds;Parent=Msa0642160-mRNA-1 |
| chr4_3 | three_prime_UTR | 43496424 | 43496704 | 43496424 | ID=Msa0642160-mRNA-1:three_prime_utr;Parent=Msa0642160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
