AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0946270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946270 MtrunA17_Chr8g0360521 97.362 417 11 0 1 417 1 417 0.0 852
Msa0946270 MtrunA17_Chr3g0113671 50.704 355 166 4 60 409 99 449 4.52e-130 382
Msa0946270 MtrunA17_Chr5g0437601 49.857 349 170 3 66 410 78 425 1.45e-129 380
Msa0946270 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 4.40e-127 373
Msa0946270 MtrunA17_Chr4g0006991 48.725 353 173 3 64 409 76 427 1.06e-126 372
Msa0946270 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.75e-124 366
Msa0946270 MtrunA17_Chr3g0114101 49.709 344 168 3 71 410 89 431 5.81e-124 366
Msa0946270 MtrunA17_Chr4g0005481 49.123 342 172 2 69 409 106 446 7.49e-123 363
Msa0946270 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 9.64e-120 354
Msa0946270 MtrunA17_Chr5g0437291 46.000 350 181 4 69 410 163 512 1.69e-115 347
Msa0946270 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 4.47e-85 264
Msa0946270 MtrunA17_Chr1g0210771 39.766 342 185 9 71 409 59 382 1.59e-82 258
Msa0946270 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 8.26e-82 256
Msa0946270 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.67e-78 246
Msa0946270 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.91e-77 245
Msa0946270 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 5.27e-75 244
Msa0946270 MtrunA17_Chr4g0068111 34.699 366 200 8 71 416 114 460 1.14e-74 240
Msa0946270 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa0946270 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 4.58e-74 235
Msa0946270 MtrunA17_Chr7g0259711 36.639 363 193 12 69 411 89 434 1.55e-73 237
Msa0946270 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 3.17e-73 233
Msa0946270 MtrunA17_Chr5g0413271 35.457 361 204 8 62 411 136 478 3.56e-73 237
Msa0946270 MtrunA17_Chr2g0287901 39.726 365 186 14 65 411 91 439 3.75e-73 236
Msa0946270 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 6.01e-73 232
Msa0946270 MtrunA17_Chr4g0071391 35.613 351 201 11 71 409 109 446 1.04e-72 235
Msa0946270 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 7.24e-72 229
Msa0946270 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 5.20e-71 228
Msa0946270 MtrunA17_Chr7g0269991 34.734 357 189 10 71 409 137 467 2.86e-70 229
Msa0946270 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 3.36e-70 226
Msa0946270 MtrunA17_Chr4g0045941 35.072 345 197 8 68 409 30 350 1.01e-68 221
Msa0946270 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 1.41e-68 221
Msa0946270 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.08e-67 224
Msa0946270 MtrunA17_Chr3g0085071 35.244 349 195 8 64 407 39 361 5.33e-67 217
Msa0946270 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 3.05e-66 215
Msa0946270 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 1.85e-64 210
Msa0946270 MtrunA17_Chr8g0368461 32.973 370 206 10 69 411 176 530 1.14e-62 211
Msa0946270 MtrunA17_Chr3g0126021 32.249 369 210 9 59 411 117 461 4.85e-61 204
Msa0946270 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 8.52e-59 198
Msa0946270 MtrunA17_Chr1g0209921 34.783 230 140 6 71 297 44 266 6.83e-49 167
Msa0946270 MtrunA17_Chr1g0178081 30.000 360 178 9 69 417 53 349 6.20e-46 162
Msa0946270 MtrunA17_Chr6g0476041 28.421 380 219 12 67 415 163 520 6.05e-45 163
Msa0946270 MtrunA17_Chr1g0188191 28.496 379 224 15 67 417 230 589 8.24e-44 161
Msa0946270 MtrunA17_Chr6g0456691 28.404 426 243 15 14 409 26 419 4.59e-41 150
Msa0946270 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 5.50e-41 149
Msa0946270 MtrunA17_Chr8g0347321 29.444 360 218 13 71 409 95 439 6.23e-41 150
Msa0946270 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.77e-41 149
Msa0946270 MtrunA17_Chr6g0456681 27.528 356 226 11 69 405 62 404 1.69e-38 143
Msa0946270 MtrunA17_Chr2g0283851 29.917 361 206 16 72 405 56 396 4.13e-38 142
Msa0946270 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 6.33e-38 142
Msa0946270 MtrunA17_Chr5g0414091 27.123 424 241 17 18 405 36 427 7.46e-38 142
Msa0946270 MtrunA17_Chr8g0384421 28.926 363 215 12 69 409 131 472 7.46e-38 142
Msa0946270 MtrunA17_Chr3g0140371 27.520 367 224 11 68 411 15 362 7.47e-38 140
Msa0946270 MtrunA17_Chr4g0049421 28.226 372 223 16 71 417 48 400 7.15e-36 136
Msa0946270 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 2.79e-35 135
Msa0946270 MtrunA17_Chr8g0387921 29.121 364 207 16 71 405 74 415 4.40e-35 134
Msa0946270 MtrunA17_Chr5g0414041 27.273 363 228 10 71 411 87 435 9.36e-34 131
Msa0946270 MtrunA17_Chr4g0070341 27.749 382 195 16 69 409 130 471 5.47e-33 129
Msa0946270 MtrunA17_Chr6g0455901 26.005 373 219 15 69 409 69 416 3.03e-29 118
Msa0946270 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 1.39e-27 114
Msa0946270 MtrunA17_Chr7g0221271 33.939 165 105 3 1 163 8 170 2.10e-26 105
Msa0946270 MtrunA17_Chr7g0221291 33.333 165 106 3 1 163 8 170 3.82e-25 100
Msa0946270 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 1.03e-16 75.5
Msa0946270 MtrunA17_Chr2g0287931 32.540 126 76 3 132 249 2 126 2.40e-15 72.4
Msa0946270 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.20e-15 71.2
Msa0946270 MtrunA17_Chr5g0429191 61.224 49 13 2 355 402 2 45 2.69e-12 61.2
Msa0946270 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.80e-12 62.4
Msa0946270 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 3.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0946270 AT1G73140.1 69.471 416 122 2 2 416 1 412 0.0 616
Msa0946270 AT5G01360.2 49.587 363 176 2 54 409 16 378 8.11e-134 389
Msa0946270 AT5G01360.1 49.587 363 176 2 54 409 72 434 2.65e-133 390
Msa0946270 AT2G40150.1 49.861 361 166 3 60 409 64 420 3.27e-131 384
Msa0946270 AT3G55990.1 50.432 347 167 2 69 410 138 484 1.48e-130 385
Msa0946270 AT2G40320.1 48.711 349 174 2 66 410 76 423 9.05e-124 365
Msa0946270 AT3G11030.1 48.571 350 174 4 66 410 101 449 2.37e-120 357
Msa0946270 AT5G01620.2 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0946270 AT5G01620.1 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0946270 AT5G01620.3 46.398 347 177 4 68 409 115 457 2.83e-119 355
Msa0946270 AT2G40160.1 41.608 423 230 5 4 409 1 423 3.29e-117 348
Msa0946270 AT2G40160.2 41.509 424 231 5 4 410 1 424 5.24e-117 348
Msa0946270 AT2G38320.1 43.868 424 204 8 1 413 8 408 1.08e-116 347
Msa0946270 AT2G38320.2 46.483 327 164 5 96 413 1 325 1.18e-99 300
Msa0946270 AT3G54260.1 39.710 345 187 7 71 412 51 377 1.27e-82 258
Msa0946270 AT2G30900.1 38.040 347 185 10 71 410 43 366 1.96e-80 252
Msa0946270 AT3G62390.1 37.500 360 193 11 64 410 132 472 3.24e-79 253
Msa0946270 AT2G40160.3 40.514 311 169 4 4 298 1 311 4.62e-79 247
Msa0946270 AT5G20590.1 36.441 354 199 9 70 410 140 480 9.58e-79 251
Msa0946270 AT5G58600.1 36.599 347 202 6 71 410 66 401 3.43e-77 245
Msa0946270 AT3G12060.1 37.079 356 197 8 69 410 194 536 5.28e-77 249
Msa0946270 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.94e-76 241
Msa0946270 AT1G29050.1 35.262 363 205 8 50 409 43 378 6.91e-75 238
Msa0946270 AT2G31110.2 38.304 342 184 8 71 409 45 362 2.62e-74 236
Msa0946270 AT5G06700.1 37.110 353 199 10 69 409 253 594 9.15e-74 242
Msa0946270 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.32e-73 235
Msa0946270 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.75e-73 237
Msa0946270 AT3G06080.2 36.975 357 199 8 70 411 102 447 1.68e-72 235
Msa0946270 AT1G60790.1 33.938 386 216 12 52 411 162 534 6.59e-69 228
Msa0946270 AT2G30010.1 33.867 375 208 10 56 410 43 397 7.93e-69 223
Msa0946270 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.08e-68 222
Msa0946270 AT2G30010.2 33.867 375 208 10 56 410 86 440 1.40e-68 224
Msa0946270 AT3G14850.2 34.582 347 201 8 69 411 32 356 3.15e-68 220
Msa0946270 AT5G19160.1 34.239 368 208 10 70 417 98 451 3.78e-68 223
Msa0946270 AT5G06230.2 35.150 367 206 9 67 414 17 370 9.53e-58 194
Msa0946270 AT1G48880.1 32.113 355 199 13 71 411 115 441 1.30e-57 195
Msa0946270 AT5G06230.1 35.150 367 206 9 67 414 58 411 2.36e-57 194
Msa0946270 AT1G78710.2 30.294 340 164 8 71 410 31 297 3.94e-56 187
Msa0946270 AT3G11570.1 33.913 345 183 12 93 414 103 425 2.76e-52 181
Msa0946270 AT3G62390.2 36.842 247 142 7 64 300 132 374 1.68e-51 178
Msa0946270 AT2G30900.2 38.496 226 124 7 71 290 43 259 4.07e-51 173
Msa0946270 AT5G20590.2 35.833 240 141 5 70 298 140 377 6.93e-51 176
Msa0946270 AT2G31110.3 38.222 225 128 4 71 292 45 261 1.45e-50 172
Msa0946270 AT3G06080.1 36.402 239 141 4 70 298 102 339 2.59e-48 168
Msa0946270 AT5G19160.2 34.728 239 145 4 70 298 98 335 3.60e-48 168
Msa0946270 AT5G58600.2 35.931 231 137 4 71 297 66 289 7.35e-48 165
Msa0946270 AT2G34070.2 32.353 272 157 6 142 409 1 249 4.47e-46 159
Msa0946270 AT5G64020.1 30.518 367 212 13 71 409 57 408 6.27e-43 155
Msa0946270 AT5G51640.1 27.907 387 221 13 64 415 131 494 8.22e-43 157
Msa0946270 AT4G25360.1 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0946270 AT4G25360.2 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0946270 AT5G64470.3 29.201 363 220 15 71 414 55 399 3.15e-42 153
Msa0946270 AT1G70230.1 26.912 353 228 11 71 411 79 413 3.11e-41 151
Msa0946270 AT3G14850.1 31.752 274 162 7 142 411 1 253 1.47e-40 145
Msa0946270 AT3G02440.1 28.531 354 218 11 71 405 127 464 2.06e-40 150
Msa0946270 AT3G02440.2 28.531 354 218 11 71 405 135 472 2.14e-40 150
Msa0946270 AT5G15890.1 28.307 378 228 10 50 405 162 518 1.34e-39 149
Msa0946270 AT5G20680.6 28.534 382 192 14 69 409 116 457 2.02e-38 144
Msa0946270 AT2G37720.1 29.787 376 191 16 71 409 143 482 2.13e-38 145
Msa0946270 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa0946270 AT2G14530.1 27.989 368 213 12 71 409 62 406 3.96e-38 142
Msa0946270 AT5G20680.2 28.534 382 192 14 69 409 192 533 4.70e-38 144
Msa0946270 AT5G20680.4 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0946270 AT5G20680.1 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0946270 AT5G20680.3 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0946270 AT5G20680.5 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0946270 AT4G23790.1 26.711 453 244 21 6 405 6 423 1.81e-37 141
Msa0946270 AT1G01430.1 26.250 400 259 12 34 410 62 448 5.51e-37 140
Msa0946270 AT5G06230.3 34.538 249 142 6 67 297 58 303 1.54e-36 136
Msa0946270 AT5G15900.1 28.255 361 223 11 69 409 65 409 1.12e-35 136
Msa0946270 AT5G15900.2 28.255 361 223 11 69 409 84 428 1.12e-35 136
Msa0946270 AT4G11090.1 26.075 372 227 13 62 405 70 421 3.73e-35 135
Msa0946270 AT4G01080.1 26.503 366 224 13 63 405 83 426 8.09e-35 134
Msa0946270 AT3G28150.1 29.223 373 208 16 66 409 65 410 2.00e-34 132
Msa0946270 AT2G31110.1 35.345 232 124 7 181 409 6 214 1.15e-33 125
Msa0946270 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.73e-21 94.7
Msa0946270 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.77e-21 95.1

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 6_3:+26807182 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 6_3:+26809359 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 6_3:+26807137 None:intergenic
GATGCTCACACCTCAGTTTA+TGG 0.206651 6_3:-26807248 Msa0946270:CDS
AACAAAAGAATGATGTTTAT+TGG 0.212670 6_3:-26808848 Msa0946270:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 6_3:-26809085 Msa0946270:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 6_3:-26807379 Msa0946270:CDS
TAGCTCTCTGTTCTTTAGTT+AGG 0.246525 6_3:+26807207 None:intergenic
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 6_3:+26808767 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 6_3:+26808747 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 6_3:+26807967 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 6_3:-26807378 Msa0946270:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 6_3:-26806148 Msa0946270:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 6_3:-26808255 Msa0946270:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 6_3:-26809196 Msa0946270:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 6_3:-26807164 Msa0946270:CDS
AACAGATCATAGACTCAAAT+TGG 0.319491 6_3:+26808807 None:intergenic
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 6_3:+26809312 None:intergenic
ATACTACTGGGCTCCATTCA+TGG 0.353905 6_3:-26808363 Msa0946270:CDS
CGTTGAGTTCACGTATGTTC+TGG 0.354464 6_3:-26806682 Msa0946270:three_prime_UTR
TCAACTTTAAATATCTTCAT+AGG 0.360087 6_3:+26808734 None:intergenic
ATATAATTGGGAAAATTGAT+TGG 0.370417 6_3:+26809372 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 6_3:-26809195 Msa0946270:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 6_3:+26806836 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 6_3:-26809275 Msa0946270:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 6_3:+26807978 None:intergenic
TAACTTACCACAAATGTGTT+GGG 0.386349 6_3:+26807856 None:intergenic
ATGCATCGATTGAATACTAC+TGG 0.392477 6_3:-26808376 Msa0946270:CDS
ATTTGAGTCTATGATCTGTT+TGG 0.397442 6_3:-26808804 Msa0946270:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 6_3:+26807285 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 6_3:+26807380 None:intergenic
AGTATGAACAACTAGCAATA+TGG 0.407962 6_3:+26806598 Msa0946260:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 6_3:+26809128 None:intergenic
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 6_3:+26806853 None:intergenic
AGAAGTGAGTTGCCCTTACT+TGG 0.416247 6_3:-26809141 Msa0946270:CDS
ACGCTCTATTAAATTAAAGT+TGG 0.428012 6_3:+26806037 Msa0946260:CDS
TGGTGGAAGGAATCGATTAC+CGG 0.428048 6_3:-26809255 Msa0946270:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 6_3:+26806873 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 6_3:-26808316 Msa0946270:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 6_3:+26809086 None:intergenic
ATTACCGGTTGTTGTGTTGC+CGG 0.437991 6_3:-26809240 Msa0946270:CDS
TCTTAAACAGATATGCATAT+AGG 0.438576 6_3:+26807117 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 6_3:+26809360 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 6_3:+26806603 Msa0946260:CDS
GAAATTGATTCAACCATGAA+TGG 0.451055 6_3:+26808350 None:intergenic
TTGGGAAAATTGATTGGATC+CGG 0.452959 6_3:+26809378 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 6_3:+26807381 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 6_3:-26807047 Msa0946270:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 6_3:+26809221 None:intergenic
TATTTGAAGGGAAATGGGTA+TGG 0.465084 6_3:-26809190 Msa0946270:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 6_3:-26809340 Msa0946270:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 6_3:-26809113 Msa0946270:CDS
TCCTCCGGCAACACAACAAC+CGG 0.467189 6_3:+26809236 None:intergenic
GAGGGTTGCAATGTATTTGA+AGG 0.469336 6_3:-26809203 Msa0946270:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 6_3:-26807163 Msa0946270:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 6_3:+26808201 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 6_3:+26806040 Msa0946260:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 6_3:-26809112 Msa0946270:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 6_3:-26807434 Msa0946270:CDS
GGAGATGCTGATATCGAGCC+AGG 0.490893 6_3:+26806624 Msa0946260:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 6_3:+26806972 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 6_3:+26808751 None:intergenic
CGGTATATTTGTGAATGATC+GGG 0.491737 6_3:+26806100 Msa0946260:CDS
CTCAGTTTATGGCGAGCGAA+AGG 0.496603 6_3:-26807237 Msa0946270:CDS
GCGGTATATTTGTGAATGAT+CGG 0.497341 6_3:+26806099 Msa0946260:CDS
ATTCTTTCTACACAAATTGG+AGG 0.504866 6_3:-26809082 Msa0946270:CDS
GTATGTCCCCAACACATTTG+TGG 0.505067 6_3:-26807863 Msa0946270:intron
CATGGGACAGAAAAGACTCC+AGG 0.506317 6_3:+26806542 Msa0946260:intron
CATTGATATGAGATGGTTGA+AGG 0.506584 6_3:+26809427 None:intergenic
GCCGGAGGATCGCATTGAGG+AGG 0.515226 6_3:-26809222 Msa0946270:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 6_3:-26807442 Msa0946270:intron
CAACTCACTTCTTCATAAAG+AGG 0.520659 6_3:+26809152 None:intergenic
TATACAATCCAAAAGGCAAA+AGG 0.521640 6_3:+26806966 None:intergenic
TCATAGGTGGAATTCTTTGG+AGG 0.523486 6_3:+26808750 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 6_3:+26807138 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 6_3:+26806994 None:intergenic
GTAACTTACCACAAATGTGT+TGG 0.530098 6_3:+26807855 None:intergenic
TACCTGGGGTCCCAGATACA+TGG 0.530934 6_3:-26807148 Msa0946270:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 6_3:-26809068 Msa0946270:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 6_3:+26806803 None:intergenic
TTCCATGTATCTGGGACCCC+AGG 0.534611 6_3:+26807146 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 6_3:-26807371 Msa0946270:CDS
TCAGTTTATGGCGAGCGAAA+GGG 0.538195 6_3:-26807236 Msa0946270:CDS
TCTTCGAAGAGAATGCATCC+TGG 0.541502 6_3:-26806560 Msa0946270:three_prime_UTR
GTTCTGTTATACAATCCAAA+AGG 0.542969 6_3:+26806959 None:intergenic
GAATTAAATCGTCTGAGAGT+TGG 0.543056 6_3:-26806660 Msa0946270:three_prime_UTR
TGTTCGAGAGCTATGTTTGG+TGG 0.543784 6_3:-26808232 Msa0946270:CDS
CATTCACTGGTGTTTACCTG+GGG 0.545869 6_3:-26807162 Msa0946270:CDS
TGGTGTTCGAGAGCTATGTT+TGG 0.547200 6_3:-26808235 Msa0946270:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 6_3:-26809079 Msa0946270:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 6_3:-26808782 Msa0946270:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 6_3:+26809109 None:intergenic
TATGAAGATATTTAAAGTTG+AGG 0.563429 6_3:-26808732 Msa0946270:intron
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 6_3:+26806565 Msa0946260:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 6_3:+26806718 Msa0946260:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 6_3:+26807286 None:intergenic
TTAAATCGTCTGAGAGTTGG+TGG 0.569032 6_3:-26806657 Msa0946270:three_prime_UTR
CCGGAGGATCGCATTGAGGA+GGG 0.569780 6_3:-26809221 Msa0946270:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 6_3:+26808200 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 6_3:+26808875 None:intergenic
TAAATAAAACACAAATGTTG+TGG 0.572067 6_3:+26806772 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 6_3:-26808274 Msa0946270:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 6_3:-26809189 Msa0946270:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 6_3:+26806719 Msa0946260:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 6_3:-26808871 Msa0946270:CDS
CTCATGGATGCAACCTCCCA+AGG 0.585468 6_3:-26809052 Msa0946270:intron
CGTCACGACAGCATATAAGT+TGG 0.586816 6_3:-26807955 Msa0946270:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 6_3:-26809202 Msa0946270:CDS
TCAAGTCTTCGATTGATCGC+CGG 0.588728 6_3:-26809397 Msa0946270:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 6_3:+26806575 Msa0946260:CDS
ACTTTAAATATCTTCATAGG+TGG 0.594287 6_3:+26808737 None:intergenic
TGATCATGCAACAAATCATA+CGG 0.594915 6_3:-26808327 Msa0946270:CDS
AACTTACCACAAATGTGTTG+GGG 0.596950 6_3:+26807857 None:intergenic
GCAAATGTACATGTCAAAGG+TGG 0.597773 6_3:+26806806 None:intergenic
ACCGGTTGTTGTGTTGCCGG+AGG 0.598806 6_3:-26809237 Msa0946270:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 6_3:-26808264 Msa0946270:CDS
ATTGGAGACTCATTACAAAG+AGG 0.601036 6_3:-26808830 Msa0946270:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 6_3:-26809268 Msa0946270:CDS
CACTTCTTCATAAAGAGGAT+AGG 0.612582 6_3:+26809157 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 6_3:-26808284 Msa0946270:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 6_3:-26809272 Msa0946270:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 6_3:-26807044 Msa0946270:three_prime_UTR
TGTTGTAAATAATAATCAAG+TGG 0.615423 6_3:+26806745 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 6_3:-26809225 Msa0946270:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 6_3:-26808312 Msa0946270:CDS
AATGAATCATACCCAATACA+AGG 0.626400 6_3:-26807392 Msa0946270:CDS
AAAGTGTTGGCTACCTTGGG+AGG 0.628073 6_3:+26809039 None:intergenic
GTTGGTGGTAAATCTTGACC+TGG 0.628676 6_3:-26806642 Msa0946270:three_prime_UTR
CTTGGGAGGTTGCATCCATG+AGG 0.629461 6_3:+26809053 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.631598 6_3:+26806807 None:intergenic
GAGATACAAACTGTAAACAA+AGG 0.634145 6_3:-26806913 Msa0946270:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 6_3:-26808375 Msa0946270:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 6_3:-26808269 Msa0946270:CDS
GAGACAGCATTGATATGAGA+TGG 0.642148 6_3:+26809420 None:intergenic
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 6_3:+26809129 None:intergenic
GATACAAAGCGTGAAGATAG+CGG 0.644538 6_3:+26806080 Msa0946260:CDS
ATACAAGGTTCGTCATATTG+GGG 0.647384 6_3:-26807377 Msa0946270:CDS
CTTTCGCTCGCCATAAACTG+AGG 0.649074 6_3:+26807238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAGTTCACAAT+CGG + chr6_3:26806513-26806532 Msa0946260:intron 15.0%
!! TAATAACTCTAGTTATTATT+AGG + chr6_3:26807823-26807842 None:intergenic 15.0%
!!! AAATTCGATTTTTTATTTTC+TGG - chr6_3:26807984-26808003 Msa0946270:CDS 15.0%
!!! AACCTAAACAATATAATTTT+CGG - chr6_3:26808651-26808670 Msa0946270:intron 15.0%
!!! CTTGAATTTTATTCAAAAAA+TGG + chr6_3:26809056-26809075 None:intergenic 15.0%
!!! CATTTTTTGAATAAAATTCA+AGG - chr6_3:26809054-26809073 Msa0946270:CDS 15.0%
!!! CTATTTTAGTTGTTTTTTTT+TGG - chr6_3:26809136-26809155 Msa0946270:CDS 15.0%
!! AGTTAAGTTATTCTATATAT+TGG + chr6_3:26809274-26809293 None:intergenic 15.0%
!! ATATAATTGGGAAAATTGAT+TGG + chr6_3:26806120-26806139 Msa0946260:CDS 20.0%
!! GAAGTGAATACAATATAATT+GGG + chr6_3:26806132-26806151 Msa0946260:CDS 20.0%
!! AGAAGTGAATACAATATAAT+TGG + chr6_3:26806133-26806152 Msa0946260:CDS 20.0%
!! AACAAAAGAATGATGTTTAT+TGG - chr6_3:26806641-26806660 Msa0946270:three_prime_UTR 20.0%
!! TCAACTTTAAATATCTTCAT+AGG + chr6_3:26806758-26806777 None:intergenic 20.0%
!!! TATGAAGATATTTAAAGTTG+AGG - chr6_3:26806757-26806776 Msa0946270:three_prime_UTR 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG + chr6_3:26806826-26806845 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG - chr6_3:26807456-26807475 Msa0946270:intron 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG - chr6_3:26807693-26807712 Msa0946270:intron 20.0%
!!! TATCAAAACTTTTCTTAACA+TGG - chr6_3:26808397-26808416 Msa0946270:intron 20.0%
!! TAAATAAAACACAAATGTTG+TGG + chr6_3:26808720-26808739 None:intergenic 20.0%
!! TGTTGTAAATAATAATCAAG+TGG + chr6_3:26808747-26808766 None:intergenic 20.0%
! ACTTTAAATATCTTCATAGG+TGG + chr6_3:26806755-26806774 None:intergenic 25.0%
! GACATAAATATTTGTGAGAT+TGG + chr6_3:26806941-26806960 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG - chr6_3:26807080-26807099 Msa0946270:exon 25.0%
!! AAAAATACATTTTGAGCAAG+TGG + chr6_3:26807601-26807620 None:intergenic 25.0%
! GAAGAGAGATGTTAATTATT+AGG + chr6_3:26807904-26807923 None:intergenic 25.0%
!!! AAGAATTTATTTTCTTCTCC+AGG - chr6_3:26808035-26808054 Msa0946270:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG + chr6_3:26808221-26808240 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG + chr6_3:26808375-26808394 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG + chr6_3:26808498-26808517 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG + chr6_3:26808619-26808638 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG + chr6_3:26808656-26808675 None:intergenic 25.0%
! CATTTAGTAGAAAAGACTAA+TGG - chr6_3:26809314-26809333 Msa0946270:CDS 25.0%
! CTCTATTAAATTAAAGTTGG+AGG + chr6_3:26809452-26809471 None:intergenic 25.0%
! ACGCTCTATTAAATTAAAGT+TGG + chr6_3:26809455-26809474 None:intergenic 25.0%
TTCTAATCTTTGCAGTTACA+AGG - chr6_3:26806149-26806168 Msa0946270:intron 30.0%
CAATGTATTTGAAGGGAAAT+GGG - chr6_3:26806294-26806313 Msa0946270:intron 30.0%
CAATTTGTGTAGAAAGAATC+AGG + chr6_3:26806406-26806425 Msa0946260:intron 30.0%
CTGATTCTTTCTACACAAAT+TGG - chr6_3:26806404-26806423 Msa0946270:intron 30.0%
ATTCTTTCTACACAAATTGG+AGG - chr6_3:26806407-26806426 Msa0946270:intron 30.0%
! GTTAAAATCTGGAAAAGTGT+TGG + chr6_3:26806466-26806485 Msa0946260:intron 30.0%
AACAGATCATAGACTCAAAT+TGG + chr6_3:26806685-26806704 Msa0946260:CDS 30.0%
ATTTGAGTCTATGATCTGTT+TGG - chr6_3:26806685-26806704 Msa0946270:three_prime_UTR 30.0%
! GAAATTGATTCAACCATGAA+TGG + chr6_3:26807142-26807161 None:intergenic 30.0%
TGATCATGCAACAAATCATA+CGG - chr6_3:26807162-26807181 Msa0946270:CDS 30.0%
CAAATCATACGGTACATAAA+CGG - chr6_3:26807173-26807192 Msa0946270:CDS 30.0%
AGTACTTGAATGAATGTTCA+TGG - chr6_3:26807351-26807370 Msa0946270:CDS 30.0%
!! TGTGCTTTTTACACAACTAT+AGG + chr6_3:26807383-26807402 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG - chr6_3:26807386-26807405 Msa0946270:CDS 30.0%
!! AACATGTTTTGTTCCAGATA+TGG - chr6_3:26807484-26807503 Msa0946270:intron 30.0%
TTATATTCTTGGACTTCATC+TGG + chr6_3:26807514-26807533 None:intergenic 30.0%
! ATAAGTTGGCGTTAAAAACA+TGG - chr6_3:26807548-26807567 Msa0946270:intron 30.0%
! TAAGTTGGCGTTAAAAACAT+GGG - chr6_3:26807549-26807568 Msa0946270:intron 30.0%
TAACTTACCACAAATGTGTT+GGG + chr6_3:26807636-26807655 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG + chr6_3:26807779-26807798 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG - chr6_3:26808097-26808116 Msa0946270:intron 30.0%
AATATGACGAACCTTGTATT+GGG + chr6_3:26808111-26808130 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG - chr6_3:26808111-26808130 Msa0946270:intron 30.0%
TAATTGGGTGATGTTCAATA+GGG + chr6_3:26808206-26808225 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG + chr6_3:26808207-26808226 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG + chr6_3:26808222-26808241 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG + chr6_3:26808309-26808328 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG + chr6_3:26808310-26808329 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG + chr6_3:26808526-26808545 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG + chr6_3:26808533-26808552 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG - chr6_3:26808576-26808595 Msa0946270:intron 30.0%
AGTATGAACAACTAGCAATA+TGG + chr6_3:26808894-26808913 None:intergenic 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG + chr6_3:26808967-26808986 None:intergenic 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG + chr6_3:26808968-26808987 None:intergenic 30.0%
CATTGATATGAGATGGTTGA+AGG + chr6_3:26806065-26806084 Msa0946260:CDS 35.0%
TTGGGAAAATTGATTGGATC+CGG + chr6_3:26806114-26806133 Msa0946260:CDS 35.0%
AGGGTTGCAATGTATTTGAA+GGG - chr6_3:26806287-26806306 Msa0946270:intron 35.0%
GCAATGTATTTGAAGGGAAA+TGG - chr6_3:26806293-26806312 Msa0946270:intron 35.0%
TATTTGAAGGGAAATGGGTA+TGG - chr6_3:26806299-26806318 Msa0946270:intron 35.0%
ATTTGAAGGGAAATGGGTAT+GGG - chr6_3:26806300-26806319 Msa0946270:intron 35.0%
CACTTCTTCATAAAGAGGAT+AGG + chr6_3:26806335-26806354 Msa0946260:intron 35.0%
CAACTCACTTCTTCATAAAG+AGG + chr6_3:26806340-26806359 Msa0946260:intron 35.0%
ATCAAGGCGAAGTTAAAATC+TGG + chr6_3:26806477-26806496 Msa0946260:intron 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG + chr6_3:26806587-26806606 Msa0946260:CDS 35.0%
! CTTATGCTTTTCTTGACTTC+AGG - chr6_3:26806585-26806604 Msa0946270:three_prime_UTR 35.0%
AACATGTGCAACAACTTCAA+AGG + chr6_3:26806617-26806636 Msa0946260:CDS 35.0%
ATTGGAGACTCATTACAAAG+AGG - chr6_3:26806659-26806678 Msa0946270:three_prime_UTR 35.0%
GTACAATCTGTAATTCCTGA+AGG - chr6_3:26806707-26806726 Msa0946270:three_prime_UTR 35.0%
TCTTCATAGGTGGAATTCTT+TGG + chr6_3:26806745-26806764 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG - chr6_3:26807113-26807132 Msa0946270:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG - chr6_3:26807114-26807133 Msa0946270:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG - chr6_3:26807306-26807325 Msa0946270:CDS 35.0%
CGTTAAAAACATGGGCAAAT+TGG - chr6_3:26807557-26807576 Msa0946270:intron 35.0%
! ATACATTTTGAGCAAGTGGT+TGG + chr6_3:26807597-26807616 None:intergenic 35.0%
AACTTACCACAAATGTGTTG+GGG + chr6_3:26807635-26807654 None:intergenic 35.0%
GTAACTTACCACAAATGTGT+TGG + chr6_3:26807637-26807656 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG + chr6_3:26807739-26807758 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG + chr6_3:26807780-26807799 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG + chr6_3:26808112-26808131 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG - chr6_3:26808110-26808129 Msa0946270:intron 35.0%
ATACAAGGTTCGTCATATTG+GGG - chr6_3:26808112-26808131 Msa0946270:intron 35.0%
TAGCTCTCTGTTCTTTAGTT+AGG + chr6_3:26808285-26808304 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG + chr6_3:26808354-26808373 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG + chr6_3:26808355-26808374 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG - chr6_3:26808442-26808461 Msa0946270:intron 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG - chr6_3:26808627-26808646 Msa0946270:intron 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG + chr6_3:26808639-26808658 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG + chr6_3:26808685-26808704 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG + chr6_3:26808689-26808708 None:intergenic 35.0%
GAATTAAATCGTCTGAGAGT+TGG - chr6_3:26808829-26808848 Msa0946270:CDS 35.0%
GAACAACTAGCAATATGGTT+TGG + chr6_3:26808889-26808908 None:intergenic 35.0%
CCCATGAAAAATGACAGTAA+TGG - chr6_3:26808964-26808983 Msa0946270:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG + chr6_3:26809344-26809363 None:intergenic 35.0%
! CCTTATACGATCTAAGCTTT+TGG - chr6_3:26809341-26809360 Msa0946270:CDS 35.0%
CGGTATATTTGTGAATGATC+GGG + chr6_3:26809392-26809411 None:intergenic 35.0%
GCGGTATATTTGTGAATGAT+CGG + chr6_3:26809393-26809412 None:intergenic 35.0%
!! GAGACAGCATTGATATGAGA+TGG + chr6_3:26806072-26806091 Msa0946260:CDS 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG - chr6_3:26806202-26806221 Msa0946270:intron 40.0%
GAGGGTTGCAATGTATTTGA+AGG - chr6_3:26806286-26806305 Msa0946270:intron 40.0%
AGACCACTTGCATGAAGAAT+GGG - chr6_3:26806377-26806396 Msa0946270:intron 40.0%
CTTTCTACACAAATTGGAGG+TGG - chr6_3:26806410-26806429 Msa0946270:intron 40.0%
ACTTCGCCTTGATTACTCTT+AGG - chr6_3:26806484-26806503 Msa0946270:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG + chr6_3:26806493-26806512 Msa0946260:intron 40.0%
TGAAGTTGTTGCACATGTTG+AGG - chr6_3:26806618-26806637 Msa0946270:three_prime_UTR 40.0%
CATAGGTGGAATTCTTTGGA+GGG + chr6_3:26806741-26806760 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG + chr6_3:26806742-26806761 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG - chr6_3:26807084-26807103 Msa0946270:exon 40.0%
TCCTGCCAAAACAAAGCTAT+AGG + chr6_3:26807088-26807107 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG - chr6_3:26807177-26807196 Msa0946270:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG - chr6_3:26807205-26807224 Msa0946270:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG - chr6_3:26807215-26807234 Msa0946270:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG + chr6_3:26807291-26807310 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG + chr6_3:26807292-26807311 None:intergenic 40.0%
GTATATCTATAGACCTTGGC+TGG - chr6_3:26807310-26807329 Msa0946270:CDS 40.0%
!! CAAGTACTGAACTATGCTCA+CGG + chr6_3:26807339-26807358 None:intergenic 40.0%
TTCATCTGGTGATCCATATC+TGG + chr6_3:26807500-26807519 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG + chr6_3:26807525-26807544 None:intergenic 40.0%
AAAGTGAAGCCCACATGATT+TGG - chr6_3:26807767-26807786 Msa0946270:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG - chr6_3:26808041-26808060 Msa0946270:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG - chr6_3:26808042-26808061 Msa0946270:intron 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG - chr6_3:26808314-26808333 Msa0946270:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG - chr6_3:26808445-26808464 Msa0946270:intron 40.0%
! TTCCAACACCTTTTGCCTTT+TGG - chr6_3:26808515-26808534 Msa0946270:intron 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG + chr6_3:26808520-26808539 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG + chr6_3:26808686-26808705 None:intergenic 40.0%
TTAAATCGTCTGAGAGTTGG+TGG - chr6_3:26808832-26808851 Msa0946270:CDS 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG + chr6_3:26808917-26808936 None:intergenic 40.0%
ATGCATTCTCTTCGAAGAAG+AGG + chr6_3:26808927-26808946 None:intergenic 40.0%
TCAAGGAAACGATGAAGATG+TGG - chr6_3:26809071-26809090 Msa0946270:CDS 40.0%
GATACAAAGCGTGAAGATAG+CGG + chr6_3:26809412-26809431 None:intergenic 40.0%
TCAAGTCTTCGATTGATCGC+CGG - chr6_3:26806092-26806111 Msa0946270:three_prime_UTR 45.0%
GCTTGCTCTTCAAGCTATCT+AGG + chr6_3:26806180-26806199 Msa0946260:intron 45.0%
TGCCGTAGAGCTGAAAAACA+TGG + chr6_3:26806207-26806226 Msa0946260:intron 45.0%
TGGTGGAAGGAATCGATTAC+CGG - chr6_3:26806234-26806253 Msa0946270:intron 45.0%
! ATTACCGGTTGTTGTGTTGC+CGG - chr6_3:26806249-26806268 Msa0946270:intron 45.0%
AGAAGTGAGTTGCCCTTACT+TGG - chr6_3:26806348-26806367 Msa0946270:intron 45.0%
TGGTCTGCTTGACCAAGTAA+GGG + chr6_3:26806363-26806382 Msa0946260:intron 45.0%
CAGACCACTTGCATGAAGAA+TGG - chr6_3:26806376-26806395 Msa0946270:intron 45.0%
TCTCCCATTCTTCATGCAAG+TGG + chr6_3:26806383-26806402 Msa0946260:intron 45.0%
!! GGAAAAGTGTTGGCTACCTT+GGG + chr6_3:26806456-26806475 Msa0946260:intron 45.0%
!! TGGAAAAGTGTTGGCTACCT+TGG + chr6_3:26806457-26806476 Msa0946260:intron 45.0%
TGGAGGGATTTCTTTCCTTC+AGG + chr6_3:26806725-26806744 Msa0946260:CDS 45.0%
ATACTACTGGGCTCCATTCA+TGG - chr6_3:26807126-26807145 Msa0946270:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG - chr6_3:26807220-26807239 Msa0946270:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG - chr6_3:26807234-26807253 Msa0946270:CDS 45.0%
TGGTGTTCGAGAGCTATGTT+TGG - chr6_3:26807254-26807273 Msa0946270:CDS 45.0%
TGTTCGAGAGCTATGTTTGG+TGG - chr6_3:26807257-26807276 Msa0946270:CDS 45.0%
CGTCACGACAGCATATAAGT+TGG - chr6_3:26807534-26807553 Msa0946270:intron 45.0%
GTATGTCCCCAACACATTTG+TGG - chr6_3:26807626-26807645 Msa0946270:intron 45.0%
! AAGCAGTTTTCGTCACTTCC+TGG + chr6_3:26808076-26808095 None:intergenic 45.0%
GATGCTCACACCTCAGTTTA+TGG - chr6_3:26808241-26808260 Msa0946270:CDS 45.0%
TCAGTTTATGGCGAGCGAAA+GGG - chr6_3:26808253-26808272 Msa0946270:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG - chr6_3:26808325-26808344 Msa0946270:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG - chr6_3:26808326-26808345 Msa0946270:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG - chr6_3:26808327-26808346 Msa0946270:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG + chr6_3:26808773-26808792 None:intergenic 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG + chr6_3:26808774-26808793 None:intergenic 45.0%
CGTTGAGTTCACGTATGTTC+TGG - chr6_3:26808807-26808826 Msa0946270:CDS 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG - chr6_3:26808847-26808866 Msa0946270:CDS 45.0%
TCTTCGAAGAGAATGCATCC+TGG - chr6_3:26808929-26808948 Msa0946270:intron 45.0%
GTGGTCTGCTTGACCAAGTA+AGG + chr6_3:26806364-26806383 Msa0946260:intron 50.0%
!! AAAGTGTTGGCTACCTTGGG+AGG + chr6_3:26806453-26806472 Msa0946260:intron 50.0%
TGGCAAACATTGGCAAGGAG+TGG - chr6_3:26807225-26807244 Msa0946270:CDS 50.0%
CTTTCGCTCGCCATAAACTG+AGG + chr6_3:26808254-26808273 None:intergenic 50.0%
CTCAGTTTATGGCGAGCGAA+AGG - chr6_3:26808252-26808271 Msa0946270:CDS 50.0%
CATGGGACAGAAAAGACTCC+AGG + chr6_3:26808950-26808969 None:intergenic 50.0%
CAGCTCTACGGCATGTCATC+TGG - chr6_3:26806214-26806233 Msa0946270:intron 55.0%
CTCTACGGCATGTCATCTGG+TGG - chr6_3:26806217-26806236 Msa0946270:intron 55.0%
ACGGCATGTCATCTGGTGGA+AGG - chr6_3:26806221-26806240 Msa0946270:intron 55.0%
TCCTCCGGCAACACAACAAC+CGG + chr6_3:26806256-26806275 Msa0946260:intron 55.0%
AATTGGAGGTGGCAGCCTCA+TGG - chr6_3:26806421-26806440 Msa0946270:intron 55.0%
CTTGGGAGGTTGCATCCATG+AGG + chr6_3:26806439-26806458 Msa0946260:intron 55.0%
CTCATGGATGCAACCTCCCA+AGG - chr6_3:26806437-26806456 Msa0946270:intron 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG - chr6_3:26808047-26808066 Msa0946270:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG - chr6_3:26808118-26808137 Msa0946270:intron 55.0%
TACCTGGGGTCCCAGATACA+TGG - chr6_3:26808341-26808360 Msa0946270:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG + chr6_3:26808346-26808365 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG + chr6_3:26808868-26808887 None:intergenic 55.0%
ACCGGTTGTTGTGTTGCCGG+AGG - chr6_3:26806252-26806271 Msa0946270:intron 60.0%
GTTGCCGGAGGATCGCATTG+AGG - chr6_3:26806264-26806283 Msa0946270:intron 60.0%
CCCTCCTCAATGCGATCCTC+CGG + chr6_3:26806271-26806290 Msa0946260:intron 60.0%
CCGGAGGATCGCATTGAGGA+GGG - chr6_3:26806268-26806287 Msa0946270:intron 60.0%
ATGCTCACGGAGACCAGCCA+AGG + chr6_3:26807326-26807345 None:intergenic 60.0%
TGGCTTCCATTCCCAGCTCC+TGG + chr6_3:26808056-26808075 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG - chr6_3:26808055-26808074 Msa0946270:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG - chr6_3:26806267-26806286 Msa0946270:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 26806032 26809479 26806032 ID=Msa0946270;Name=Msa0946270
chr6_3 mRNA 26806032 26809479 26806032 ID=Msa0946270-mRNA-1;Parent=Msa0946270;Name=Msa0946270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=50|1|1|1|0.8|0.66|6|682|417
chr6_3 exon 26806032 26806159 26806032 ID=Msa0946270-mRNA-1:exon:7429;Parent=Msa0946270-mRNA-1
chr6_3 exon 26806543 26807454 26806543 ID=Msa0946270-mRNA-1:exon:7428;Parent=Msa0946270-mRNA-1
chr6_3 exon 26807864 26808010 26807864 ID=Msa0946270-mRNA-1:exon:7427;Parent=Msa0946270-mRNA-1
chr6_3 exon 26808206 26808405 26808206 ID=Msa0946270-mRNA-1:exon:7426;Parent=Msa0946270-mRNA-1
chr6_3 exon 26808733 26808904 26808733 ID=Msa0946270-mRNA-1:exon:7425;Parent=Msa0946270-mRNA-1
chr6_3 exon 26809053 26809479 26809053 ID=Msa0946270-mRNA-1:exon:7424;Parent=Msa0946270-mRNA-1
chr6_3 five_prime_UTR 26809430 26809479 26809430 ID=Msa0946270-mRNA-1:five_prime_utr;Parent=Msa0946270-mRNA-1
chr6_3 CDS 26809053 26809429 26809053 ID=Msa0946270-mRNA-1:cds;Parent=Msa0946270-mRNA-1
chr6_3 CDS 26808733 26808904 26808733 ID=Msa0946270-mRNA-1:cds;Parent=Msa0946270-mRNA-1
chr6_3 CDS 26808206 26808405 26808206 ID=Msa0946270-mRNA-1:cds;Parent=Msa0946270-mRNA-1
chr6_3 CDS 26807864 26808010 26807864 ID=Msa0946270-mRNA-1:cds;Parent=Msa0946270-mRNA-1
chr6_3 CDS 26807097 26807454 26807097 ID=Msa0946270-mRNA-1:cds;Parent=Msa0946270-mRNA-1
chr6_3 three_prime_UTR 26806543 26807096 26806543 ID=Msa0946270-mRNA-1:three_prime_utr;Parent=Msa0946270-mRNA-1
chr6_3 three_prime_UTR 26806032 26806159 26806032 ID=Msa0946270-mRNA-1:three_prime_utr;Parent=Msa0946270-mRNA-1
Gene Sequence

>Msa0946270

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa0946270

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*