AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528620 MtrunA17_Chr8g0360521 97.362 417 11 0 1 417 1 417 0.0 852
Msa0528620 MtrunA17_Chr3g0113671 50.704 355 166 4 60 409 99 449 4.52e-130 382
Msa0528620 MtrunA17_Chr5g0437601 49.857 349 170 3 66 410 78 425 1.45e-129 380
Msa0528620 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 4.40e-127 373
Msa0528620 MtrunA17_Chr4g0006991 48.725 353 173 3 64 409 76 427 1.06e-126 372
Msa0528620 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.75e-124 366
Msa0528620 MtrunA17_Chr3g0114101 49.709 344 168 3 71 410 89 431 5.81e-124 366
Msa0528620 MtrunA17_Chr4g0005481 49.123 342 172 2 69 409 106 446 7.49e-123 363
Msa0528620 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 9.64e-120 354
Msa0528620 MtrunA17_Chr5g0437291 46.000 350 181 4 69 410 163 512 1.69e-115 347
Msa0528620 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 4.47e-85 264
Msa0528620 MtrunA17_Chr1g0210771 39.766 342 185 9 71 409 59 382 1.59e-82 258
Msa0528620 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 8.26e-82 256
Msa0528620 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.67e-78 246
Msa0528620 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.91e-77 245
Msa0528620 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 5.27e-75 244
Msa0528620 MtrunA17_Chr4g0068111 34.699 366 200 8 71 416 114 460 1.14e-74 240
Msa0528620 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa0528620 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 4.58e-74 235
Msa0528620 MtrunA17_Chr7g0259711 36.639 363 193 12 69 411 89 434 1.55e-73 237
Msa0528620 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 3.17e-73 233
Msa0528620 MtrunA17_Chr5g0413271 35.457 361 204 8 62 411 136 478 3.56e-73 237
Msa0528620 MtrunA17_Chr2g0287901 39.726 365 186 14 65 411 91 439 3.75e-73 236
Msa0528620 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 6.01e-73 232
Msa0528620 MtrunA17_Chr4g0071391 35.613 351 201 11 71 409 109 446 1.04e-72 235
Msa0528620 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 7.24e-72 229
Msa0528620 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 5.20e-71 228
Msa0528620 MtrunA17_Chr7g0269991 34.734 357 189 10 71 409 137 467 2.86e-70 229
Msa0528620 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 3.36e-70 226
Msa0528620 MtrunA17_Chr4g0045941 35.072 345 197 8 68 409 30 350 1.01e-68 221
Msa0528620 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 1.41e-68 221
Msa0528620 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.08e-67 224
Msa0528620 MtrunA17_Chr3g0085071 35.244 349 195 8 64 407 39 361 5.33e-67 217
Msa0528620 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 3.05e-66 215
Msa0528620 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 1.85e-64 210
Msa0528620 MtrunA17_Chr8g0368461 32.973 370 206 10 69 411 176 530 1.14e-62 211
Msa0528620 MtrunA17_Chr3g0126021 32.249 369 210 9 59 411 117 461 4.85e-61 204
Msa0528620 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 8.52e-59 198
Msa0528620 MtrunA17_Chr1g0209921 34.783 230 140 6 71 297 44 266 6.83e-49 167
Msa0528620 MtrunA17_Chr1g0178081 30.000 360 178 9 69 417 53 349 6.20e-46 162
Msa0528620 MtrunA17_Chr6g0476041 28.421 380 219 12 67 415 163 520 6.05e-45 163
Msa0528620 MtrunA17_Chr1g0188191 28.496 379 224 15 67 417 230 589 8.24e-44 161
Msa0528620 MtrunA17_Chr6g0456691 28.404 426 243 15 14 409 26 419 4.59e-41 150
Msa0528620 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 5.50e-41 149
Msa0528620 MtrunA17_Chr8g0347321 29.444 360 218 13 71 409 95 439 6.23e-41 150
Msa0528620 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.77e-41 149
Msa0528620 MtrunA17_Chr6g0456681 27.528 356 226 11 69 405 62 404 1.69e-38 143
Msa0528620 MtrunA17_Chr2g0283851 29.917 361 206 16 72 405 56 396 4.13e-38 142
Msa0528620 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 6.33e-38 142
Msa0528620 MtrunA17_Chr5g0414091 27.123 424 241 17 18 405 36 427 7.46e-38 142
Msa0528620 MtrunA17_Chr8g0384421 28.926 363 215 12 69 409 131 472 7.46e-38 142
Msa0528620 MtrunA17_Chr3g0140371 27.520 367 224 11 68 411 15 362 7.47e-38 140
Msa0528620 MtrunA17_Chr4g0049421 28.226 372 223 16 71 417 48 400 7.15e-36 136
Msa0528620 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 2.79e-35 135
Msa0528620 MtrunA17_Chr8g0387921 29.121 364 207 16 71 405 74 415 4.40e-35 134
Msa0528620 MtrunA17_Chr5g0414041 27.273 363 228 10 71 411 87 435 9.36e-34 131
Msa0528620 MtrunA17_Chr4g0070341 27.749 382 195 16 69 409 130 471 5.47e-33 129
Msa0528620 MtrunA17_Chr6g0455901 26.005 373 219 15 69 409 69 416 3.03e-29 118
Msa0528620 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 1.39e-27 114
Msa0528620 MtrunA17_Chr7g0221271 33.939 165 105 3 1 163 8 170 2.10e-26 105
Msa0528620 MtrunA17_Chr7g0221291 33.333 165 106 3 1 163 8 170 3.82e-25 100
Msa0528620 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 1.03e-16 75.5
Msa0528620 MtrunA17_Chr2g0287931 32.540 126 76 3 132 249 2 126 2.40e-15 72.4
Msa0528620 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.20e-15 71.2
Msa0528620 MtrunA17_Chr5g0429191 61.224 49 13 2 355 402 2 45 2.69e-12 61.2
Msa0528620 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.80e-12 62.4
Msa0528620 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 3.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528620 AT1G73140.1 69.471 416 122 2 2 416 1 412 0.0 616
Msa0528620 AT5G01360.2 49.587 363 176 2 54 409 16 378 8.11e-134 389
Msa0528620 AT5G01360.1 49.587 363 176 2 54 409 72 434 2.65e-133 390
Msa0528620 AT2G40150.1 49.861 361 166 3 60 409 64 420 3.27e-131 384
Msa0528620 AT3G55990.1 50.432 347 167 2 69 410 138 484 1.48e-130 385
Msa0528620 AT2G40320.1 48.711 349 174 2 66 410 76 423 9.05e-124 365
Msa0528620 AT3G11030.1 48.571 350 174 4 66 410 101 449 2.37e-120 357
Msa0528620 AT5G01620.2 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0528620 AT5G01620.1 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0528620 AT5G01620.3 46.398 347 177 4 68 409 115 457 2.83e-119 355
Msa0528620 AT2G40160.1 41.608 423 230 5 4 409 1 423 3.29e-117 348
Msa0528620 AT2G40160.2 41.509 424 231 5 4 410 1 424 5.24e-117 348
Msa0528620 AT2G38320.1 43.868 424 204 8 1 413 8 408 1.08e-116 347
Msa0528620 AT2G38320.2 46.483 327 164 5 96 413 1 325 1.18e-99 300
Msa0528620 AT3G54260.1 39.710 345 187 7 71 412 51 377 1.27e-82 258
Msa0528620 AT2G30900.1 38.040 347 185 10 71 410 43 366 1.96e-80 252
Msa0528620 AT3G62390.1 37.500 360 193 11 64 410 132 472 3.24e-79 253
Msa0528620 AT2G40160.3 40.514 311 169 4 4 298 1 311 4.62e-79 247
Msa0528620 AT5G20590.1 36.441 354 199 9 70 410 140 480 9.58e-79 251
Msa0528620 AT5G58600.1 36.599 347 202 6 71 410 66 401 3.43e-77 245
Msa0528620 AT3G12060.1 37.079 356 197 8 69 410 194 536 5.28e-77 249
Msa0528620 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.94e-76 241
Msa0528620 AT1G29050.1 35.262 363 205 8 50 409 43 378 6.91e-75 238
Msa0528620 AT2G31110.2 38.304 342 184 8 71 409 45 362 2.62e-74 236
Msa0528620 AT5G06700.1 37.110 353 199 10 69 409 253 594 9.15e-74 242
Msa0528620 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.32e-73 235
Msa0528620 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.75e-73 237
Msa0528620 AT3G06080.2 36.975 357 199 8 70 411 102 447 1.68e-72 235
Msa0528620 AT1G60790.1 33.938 386 216 12 52 411 162 534 6.59e-69 228
Msa0528620 AT2G30010.1 33.867 375 208 10 56 410 43 397 7.93e-69 223
Msa0528620 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.08e-68 222
Msa0528620 AT2G30010.2 33.867 375 208 10 56 410 86 440 1.40e-68 224
Msa0528620 AT3G14850.2 34.582 347 201 8 69 411 32 356 3.15e-68 220
Msa0528620 AT5G19160.1 34.239 368 208 10 70 417 98 451 3.78e-68 223
Msa0528620 AT5G06230.2 35.150 367 206 9 67 414 17 370 9.53e-58 194
Msa0528620 AT1G48880.1 32.113 355 199 13 71 411 115 441 1.30e-57 195
Msa0528620 AT5G06230.1 35.150 367 206 9 67 414 58 411 2.36e-57 194
Msa0528620 AT1G78710.2 30.294 340 164 8 71 410 31 297 3.94e-56 187
Msa0528620 AT3G11570.1 33.913 345 183 12 93 414 103 425 2.76e-52 181
Msa0528620 AT3G62390.2 36.842 247 142 7 64 300 132 374 1.68e-51 178
Msa0528620 AT2G30900.2 38.496 226 124 7 71 290 43 259 4.07e-51 173
Msa0528620 AT5G20590.2 35.833 240 141 5 70 298 140 377 6.93e-51 176
Msa0528620 AT2G31110.3 38.222 225 128 4 71 292 45 261 1.45e-50 172
Msa0528620 AT3G06080.1 36.402 239 141 4 70 298 102 339 2.59e-48 168
Msa0528620 AT5G19160.2 34.728 239 145 4 70 298 98 335 3.60e-48 168
Msa0528620 AT5G58600.2 35.931 231 137 4 71 297 66 289 7.35e-48 165
Msa0528620 AT2G34070.2 32.353 272 157 6 142 409 1 249 4.47e-46 159
Msa0528620 AT5G64020.1 30.518 367 212 13 71 409 57 408 6.27e-43 155
Msa0528620 AT5G51640.1 27.907 387 221 13 64 415 131 494 8.22e-43 157
Msa0528620 AT4G25360.1 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0528620 AT4G25360.2 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0528620 AT5G64470.3 29.201 363 220 15 71 414 55 399 3.15e-42 153
Msa0528620 AT1G70230.1 26.912 353 228 11 71 411 79 413 3.11e-41 151
Msa0528620 AT3G14850.1 31.752 274 162 7 142 411 1 253 1.47e-40 145
Msa0528620 AT3G02440.1 28.531 354 218 11 71 405 127 464 2.06e-40 150
Msa0528620 AT3G02440.2 28.531 354 218 11 71 405 135 472 2.14e-40 150
Msa0528620 AT5G15890.1 28.307 378 228 10 50 405 162 518 1.34e-39 149
Msa0528620 AT5G20680.6 28.534 382 192 14 69 409 116 457 2.02e-38 144
Msa0528620 AT2G37720.1 29.787 376 191 16 71 409 143 482 2.13e-38 145
Msa0528620 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa0528620 AT2G14530.1 27.989 368 213 12 71 409 62 406 3.96e-38 142
Msa0528620 AT5G20680.2 28.534 382 192 14 69 409 192 533 4.70e-38 144
Msa0528620 AT5G20680.4 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0528620 AT5G20680.1 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0528620 AT5G20680.3 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0528620 AT5G20680.5 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0528620 AT4G23790.1 26.711 453 244 21 6 405 6 423 1.81e-37 141
Msa0528620 AT1G01430.1 26.250 400 259 12 34 410 62 448 5.51e-37 140
Msa0528620 AT5G06230.3 34.538 249 142 6 67 297 58 303 1.54e-36 136
Msa0528620 AT5G15900.1 28.255 361 223 11 69 409 65 409 1.12e-35 136
Msa0528620 AT5G15900.2 28.255 361 223 11 69 409 84 428 1.12e-35 136
Msa0528620 AT4G11090.1 26.075 372 227 13 62 405 70 421 3.73e-35 135
Msa0528620 AT4G01080.1 26.503 366 224 13 63 405 83 426 8.09e-35 134
Msa0528620 AT3G28150.1 29.223 373 208 16 66 409 65 410 2.00e-34 132
Msa0528620 AT2G31110.1 35.345 232 124 7 181 409 6 214 1.15e-33 125
Msa0528620 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.73e-21 94.7
Msa0528620 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.77e-21 95.1

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 4_1:-1472279 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 4_1:-1470102 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 4_1:-1472324 None:intergenic
GATGCTCACACCTCAGTTTA+TGG 0.206651 4_1:+1472213 Msa0528620:CDS
AACAAAAGAATGATGTTTAT+TGG 0.212670 4_1:+1470613 Msa0528620:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 4_1:+1470376 Msa0528620:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 4_1:+1472082 Msa0528620:CDS
TAGCTCTCTGTTCTTTAGTT+AGG 0.246525 4_1:-1472254 None:intergenic
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 4_1:-1470694 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 4_1:-1470714 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 4_1:-1471494 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 4_1:+1472083 Msa0528620:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 4_1:+1473312 Msa0528620:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 4_1:+1471206 Msa0528620:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 4_1:+1470265 Msa0528620:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 4_1:+1472297 Msa0528620:CDS
AACAGATCATAGACTCAAAT+TGG 0.319491 4_1:-1470654 None:intergenic
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 4_1:-1470149 None:intergenic
ATACTACTGGGCTCCATTCA+TGG 0.353905 4_1:+1471098 Msa0528620:CDS
CGTTGAGTTCACGTATGTTC+TGG 0.354464 4_1:+1472779 Msa0528620:three_prime_UTR
TCAACTTTAAATATCTTCAT+AGG 0.360087 4_1:-1470727 None:intergenic
ATATAATTGGGAAAATTGAT+TGG 0.370417 4_1:-1470089 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 4_1:+1470266 Msa0528620:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 4_1:-1472625 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 4_1:+1470186 Msa0528620:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 4_1:-1471483 None:intergenic
TAACTTACCACAAATGTGTT+GGG 0.386349 4_1:-1471605 None:intergenic
ATGCATCGATTGAATACTAC+TGG 0.392477 4_1:+1471085 Msa0528620:CDS
ATTTGAGTCTATGATCTGTT+TGG 0.397442 4_1:+1470657 Msa0528620:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 4_1:-1472176 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 4_1:-1472081 None:intergenic
AGTATGAACAACTAGCAATA+TGG 0.407962 4_1:-1472863 Msa0528630:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 4_1:-1470333 None:intergenic
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 4_1:-1472608 None:intergenic
AGAAGTGAGTTGCCCTTACT+TGG 0.416247 4_1:+1470320 Msa0528620:CDS
ACGCTCTATTAAATTAAAGT+TGG 0.428012 4_1:-1473423 Msa0528630:CDS
TGGTGGAAGGAATCGATTAC+CGG 0.428048 4_1:+1470206 Msa0528620:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 4_1:-1472588 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 4_1:+1471145 Msa0528620:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 4_1:-1470375 None:intergenic
ATTACCGGTTGTTGTGTTGC+CGG 0.437991 4_1:+1470221 Msa0528620:CDS
TCTTAAACAGATATGCATAT+AGG 0.438576 4_1:-1472344 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 4_1:-1470101 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 4_1:-1472858 Msa0528630:CDS
GAAATTGATTCAACCATGAA+TGG 0.451055 4_1:-1471111 None:intergenic
TTGGGAAAATTGATTGGATC+CGG 0.452959 4_1:-1470083 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 4_1:-1472080 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 4_1:+1472414 Msa0528620:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 4_1:-1470240 None:intergenic
TATTTGAAGGGAAATGGGTA+TGG 0.465084 4_1:+1470271 Msa0528620:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 4_1:+1470121 Msa0528620:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 4_1:+1470348 Msa0528620:CDS
TCCTCCGGCAACACAACAAC+CGG 0.467189 4_1:-1470225 None:intergenic
GAGGGTTGCAATGTATTTGA+AGG 0.469336 4_1:+1470258 Msa0528620:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 4_1:+1472298 Msa0528620:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 4_1:-1471260 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 4_1:-1473420 Msa0528630:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 4_1:+1470349 Msa0528620:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 4_1:+1472027 Msa0528620:intron
GGAGATGCTGATATCGAGCC+AGG 0.490893 4_1:-1472837 Msa0528630:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 4_1:-1472489 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 4_1:-1470710 None:intergenic
CGGTATATTTGTGAATGATC+GGG 0.491737 4_1:-1473360 Msa0528630:CDS
CTCAGTTTATGGCGAGCGAA+AGG 0.496603 4_1:+1472224 Msa0528620:CDS
GCGGTATATTTGTGAATGAT+CGG 0.497341 4_1:-1473361 Msa0528630:CDS
ATTCTTTCTACACAAATTGG+AGG 0.504866 4_1:+1470379 Msa0528620:CDS
GTATGTCCCCAACACATTTG+TGG 0.505067 4_1:+1471598 Msa0528620:CDS
CATGGGACAGAAAAGACTCC+AGG 0.506317 4_1:-1472919 Msa0528630:intron
CATTGATATGAGATGGTTGA+AGG 0.506584 4_1:-1470034 None:intergenic
GCCGGAGGATCGCATTGAGG+AGG 0.515226 4_1:+1470239 Msa0528620:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 4_1:+1472019 Msa0528620:intron
CAACTCACTTCTTCATAAAG+AGG 0.520659 4_1:-1470309 None:intergenic
TATACAATCCAAAAGGCAAA+AGG 0.521640 4_1:-1472495 None:intergenic
TCATAGGTGGAATTCTTTGG+AGG 0.523486 4_1:-1470711 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 4_1:-1472323 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 4_1:-1472467 None:intergenic
GTAACTTACCACAAATGTGT+TGG 0.530098 4_1:-1471606 None:intergenic
TACCTGGGGTCCCAGATACA+TGG 0.530934 4_1:+1472313 Msa0528620:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 4_1:+1470393 Msa0528620:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 4_1:-1472658 None:intergenic
TTCCATGTATCTGGGACCCC+AGG 0.534611 4_1:-1472315 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 4_1:+1472090 Msa0528620:CDS
TCAGTTTATGGCGAGCGAAA+GGG 0.538195 4_1:+1472225 Msa0528620:CDS
TCTTCGAAGAGAATGCATCC+TGG 0.541502 4_1:+1472901 Msa0528620:three_prime_UTR
GTTCTGTTATACAATCCAAA+AGG 0.542969 4_1:-1472502 None:intergenic
GAATTAAATCGTCTGAGAGT+TGG 0.543056 4_1:+1472801 Msa0528620:three_prime_UTR
TGTTCGAGAGCTATGTTTGG+TGG 0.543784 4_1:+1471229 Msa0528620:CDS
CATTCACTGGTGTTTACCTG+GGG 0.545869 4_1:+1472299 Msa0528620:CDS
TGGTGTTCGAGAGCTATGTT+TGG 0.547200 4_1:+1471226 Msa0528620:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 4_1:+1470382 Msa0528620:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 4_1:+1470679 Msa0528620:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 4_1:-1470352 None:intergenic
TATGAAGATATTTAAAGTTG+AGG 0.563429 4_1:+1470729 Msa0528620:CDS
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 4_1:-1472896 Msa0528630:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 4_1:-1472743 Msa0528630:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 4_1:-1472175 None:intergenic
TTAAATCGTCTGAGAGTTGG+TGG 0.569032 4_1:+1472804 Msa0528620:three_prime_UTR
CCGGAGGATCGCATTGAGGA+GGG 0.569780 4_1:+1470240 Msa0528620:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 4_1:-1471261 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 4_1:-1470586 None:intergenic
TAAATAAAACACAAATGTTG+TGG 0.572067 4_1:-1472689 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 4_1:+1471187 Msa0528620:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 4_1:+1470272 Msa0528620:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 4_1:-1472742 Msa0528630:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 4_1:+1470590 Msa0528620:CDS
CTCATGGATGCAACCTCCCA+AGG 0.585468 4_1:+1470409 Msa0528620:CDS
CGTCACGACAGCATATAAGT+TGG 0.586816 4_1:+1471506 Msa0528620:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 4_1:+1470259 Msa0528620:CDS
TCAAGTCTTCGATTGATCGC+CGG 0.588728 4_1:+1470064 Msa0528620:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 4_1:-1472886 Msa0528630:CDS
ACTTTAAATATCTTCATAGG+TGG 0.594287 4_1:-1470724 None:intergenic
TGATCATGCAACAAATCATA+CGG 0.594915 4_1:+1471134 Msa0528620:CDS
AACTTACCACAAATGTGTTG+GGG 0.596950 4_1:-1471604 None:intergenic
GCAAATGTACATGTCAAAGG+TGG 0.597773 4_1:-1472655 None:intergenic
ACCGGTTGTTGTGTTGCCGG+AGG 0.598806 4_1:+1470224 Msa0528620:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 4_1:+1471197 Msa0528620:CDS
ATTGGAGACTCATTACAAAG+AGG 0.601036 4_1:+1470631 Msa0528620:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 4_1:+1470193 Msa0528620:CDS
CACTTCTTCATAAAGAGGAT+AGG 0.612582 4_1:-1470304 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 4_1:+1471177 Msa0528620:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 4_1:+1470189 Msa0528620:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 4_1:+1472417 Msa0528620:three_prime_UTR
TGTTGTAAATAATAATCAAG+TGG 0.615423 4_1:-1472716 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 4_1:+1470236 Msa0528620:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 4_1:+1471149 Msa0528620:CDS
AATGAATCATACCCAATACA+AGG 0.626400 4_1:+1472069 Msa0528620:CDS
AAAGTGTTGGCTACCTTGGG+AGG 0.628073 4_1:-1470422 None:intergenic
GTTGGTGGTAAATCTTGACC+TGG 0.628676 4_1:+1472819 Msa0528620:three_prime_UTR
CTTGGGAGGTTGCATCCATG+AGG 0.629461 4_1:-1470408 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.631598 4_1:-1472654 None:intergenic
GAGATACAAACTGTAAACAA+AGG 0.634145 4_1:+1472548 Msa0528620:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 4_1:+1471086 Msa0528620:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 4_1:+1471192 Msa0528620:CDS
GAGACAGCATTGATATGAGA+TGG 0.642148 4_1:-1470041 None:intergenic
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 4_1:-1470332 None:intergenic
GATACAAAGCGTGAAGATAG+CGG 0.644538 4_1:-1473380 Msa0528630:CDS
ATACAAGGTTCGTCATATTG+GGG 0.647384 4_1:+1472084 Msa0528620:CDS
CTTTCGCTCGCCATAAACTG+AGG 0.649074 4_1:-1472223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAGTTCACAAT+CGG - chr4_1:1470485-1470504 None:intergenic 15.0%
!! TAATAACTCTAGTTATTATT+AGG - chr4_1:1471795-1471814 None:intergenic 15.0%
!!! AAATTCGATTTTTTATTTTC+TGG + chr4_1:1471956-1471975 Msa0528620:intron 15.0%
!!! AACCTAAACAATATAATTTT+CGG + chr4_1:1472623-1472642 Msa0528620:three_prime_UTR 15.0%
!!! CTTGAATTTTATTCAAAAAA+TGG - chr4_1:1473028-1473047 Msa0528630:intron 15.0%
!!! CATTTTTTGAATAAAATTCA+AGG + chr4_1:1473026-1473045 Msa0528620:intron 15.0%
!!! CTATTTTAGTTGTTTTTTTT+TGG + chr4_1:1473108-1473127 Msa0528620:intron 15.0%
!! AGTTAAGTTATTCTATATAT+TGG - chr4_1:1473245-1473264 Msa0528630:intron 15.0%
!! ATATAATTGGGAAAATTGAT+TGG - chr4_1:1470092-1470111 None:intergenic 20.0%
!! GAAGTGAATACAATATAATT+GGG - chr4_1:1470104-1470123 None:intergenic 20.0%
!! AGAAGTGAATACAATATAAT+TGG - chr4_1:1470105-1470124 None:intergenic 20.0%
!! AACAAAAGAATGATGTTTAT+TGG + chr4_1:1470613-1470632 Msa0528620:CDS 20.0%
!! TCAACTTTAAATATCTTCAT+AGG - chr4_1:1470730-1470749 None:intergenic 20.0%
!!! TATGAAGATATTTAAAGTTG+AGG + chr4_1:1470729-1470748 Msa0528620:CDS 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG - chr4_1:1470798-1470817 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG + chr4_1:1471428-1471447 Msa0528620:intron 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG + chr4_1:1471665-1471684 Msa0528620:intron 20.0%
!!! TATCAAAACTTTTCTTAACA+TGG + chr4_1:1472369-1472388 Msa0528620:exon 20.0%
!! TAAATAAAACACAAATGTTG+TGG - chr4_1:1472692-1472711 None:intergenic 20.0%
!! TGTTGTAAATAATAATCAAG+TGG - chr4_1:1472719-1472738 None:intergenic 20.0%
! ACTTTAAATATCTTCATAGG+TGG - chr4_1:1470727-1470746 None:intergenic 25.0%
! GACATAAATATTTGTGAGAT+TGG - chr4_1:1470913-1470932 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG + chr4_1:1471052-1471071 Msa0528620:intron 25.0%
!! AAAAATACATTTTGAGCAAG+TGG - chr4_1:1471573-1471592 None:intergenic 25.0%
! GAAGAGAGATGTTAATTATT+AGG - chr4_1:1471876-1471895 None:intergenic 25.0%
!!! AAGAATTTATTTTCTTCTCC+AGG + chr4_1:1472007-1472026 Msa0528620:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG - chr4_1:1472193-1472212 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG - chr4_1:1472347-1472366 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG - chr4_1:1472470-1472489 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG - chr4_1:1472591-1472610 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG - chr4_1:1472628-1472647 None:intergenic 25.0%
! CATTTAGTAGAAAAGACTAA+TGG + chr4_1:1473285-1473304 Msa0528620:intron 25.0%
! CTCTATTAAATTAAAGTTGG+AGG - chr4_1:1473423-1473442 Msa0528630:CDS 25.0%
! ACGCTCTATTAAATTAAAGT+TGG - chr4_1:1473426-1473445 Msa0528630:CDS 25.0%
TTCTAATCTTTGCAGTTACA+AGG + chr4_1:1470121-1470140 Msa0528620:CDS 30.0%
CAATGTATTTGAAGGGAAAT+GGG + chr4_1:1470266-1470285 Msa0528620:CDS 30.0%
CAATTTGTGTAGAAAGAATC+AGG - chr4_1:1470378-1470397 None:intergenic 30.0%
CTGATTCTTTCTACACAAAT+TGG + chr4_1:1470376-1470395 Msa0528620:CDS 30.0%
ATTCTTTCTACACAAATTGG+AGG + chr4_1:1470379-1470398 Msa0528620:CDS 30.0%
! GTTAAAATCTGGAAAAGTGT+TGG - chr4_1:1470438-1470457 None:intergenic 30.0%
AACAGATCATAGACTCAAAT+TGG - chr4_1:1470657-1470676 None:intergenic 30.0%
ATTTGAGTCTATGATCTGTT+TGG + chr4_1:1470657-1470676 Msa0528620:CDS 30.0%
! GAAATTGATTCAACCATGAA+TGG - chr4_1:1471114-1471133 None:intergenic 30.0%
TGATCATGCAACAAATCATA+CGG + chr4_1:1471134-1471153 Msa0528620:CDS 30.0%
CAAATCATACGGTACATAAA+CGG + chr4_1:1471145-1471164 Msa0528620:CDS 30.0%
AGTACTTGAATGAATGTTCA+TGG + chr4_1:1471323-1471342 Msa0528620:intron 30.0%
!! TGTGCTTTTTACACAACTAT+AGG - chr4_1:1471355-1471374 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG + chr4_1:1471358-1471377 Msa0528620:intron 30.0%
!! AACATGTTTTGTTCCAGATA+TGG + chr4_1:1471456-1471475 Msa0528620:intron 30.0%
TTATATTCTTGGACTTCATC+TGG - chr4_1:1471486-1471505 None:intergenic 30.0%
! ATAAGTTGGCGTTAAAAACA+TGG + chr4_1:1471520-1471539 Msa0528620:CDS 30.0%
! TAAGTTGGCGTTAAAAACAT+GGG + chr4_1:1471521-1471540 Msa0528620:CDS 30.0%
TAACTTACCACAAATGTGTT+GGG - chr4_1:1471608-1471627 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG - chr4_1:1471751-1471770 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG + chr4_1:1472069-1472088 Msa0528620:CDS 30.0%
AATATGACGAACCTTGTATT+GGG - chr4_1:1472083-1472102 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG + chr4_1:1472083-1472102 Msa0528620:CDS 30.0%
TAATTGGGTGATGTTCAATA+GGG - chr4_1:1472178-1472197 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG - chr4_1:1472179-1472198 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG - chr4_1:1472194-1472213 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG - chr4_1:1472281-1472300 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG - chr4_1:1472282-1472301 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG - chr4_1:1472498-1472517 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG - chr4_1:1472505-1472524 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG + chr4_1:1472548-1472567 Msa0528620:three_prime_UTR 30.0%
AGTATGAACAACTAGCAATA+TGG - chr4_1:1472866-1472885 Msa0528630:CDS 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG - chr4_1:1472939-1472958 Msa0528630:intron 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG - chr4_1:1472940-1472959 Msa0528630:intron 30.0%
CATTGATATGAGATGGTTGA+AGG - chr4_1:1470037-1470056 None:intergenic 35.0%
TTGGGAAAATTGATTGGATC+CGG - chr4_1:1470086-1470105 None:intergenic 35.0%
AGGGTTGCAATGTATTTGAA+GGG + chr4_1:1470259-1470278 Msa0528620:CDS 35.0%
GCAATGTATTTGAAGGGAAA+TGG + chr4_1:1470265-1470284 Msa0528620:CDS 35.0%
TATTTGAAGGGAAATGGGTA+TGG + chr4_1:1470271-1470290 Msa0528620:CDS 35.0%
ATTTGAAGGGAAATGGGTAT+GGG + chr4_1:1470272-1470291 Msa0528620:CDS 35.0%
CACTTCTTCATAAAGAGGAT+AGG - chr4_1:1470307-1470326 None:intergenic 35.0%
CAACTCACTTCTTCATAAAG+AGG - chr4_1:1470312-1470331 None:intergenic 35.0%
ATCAAGGCGAAGTTAAAATC+TGG - chr4_1:1470449-1470468 None:intergenic 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG - chr4_1:1470559-1470578 None:intergenic 35.0%
! CTTATGCTTTTCTTGACTTC+AGG + chr4_1:1470557-1470576 Msa0528620:intron 35.0%
AACATGTGCAACAACTTCAA+AGG - chr4_1:1470589-1470608 None:intergenic 35.0%
ATTGGAGACTCATTACAAAG+AGG + chr4_1:1470631-1470650 Msa0528620:CDS 35.0%
GTACAATCTGTAATTCCTGA+AGG + chr4_1:1470679-1470698 Msa0528620:CDS 35.0%
TCTTCATAGGTGGAATTCTT+TGG - chr4_1:1470717-1470736 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG + chr4_1:1471085-1471104 Msa0528620:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG + chr4_1:1471086-1471105 Msa0528620:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG + chr4_1:1471278-1471297 Msa0528620:intron 35.0%
CGTTAAAAACATGGGCAAAT+TGG + chr4_1:1471529-1471548 Msa0528620:CDS 35.0%
! ATACATTTTGAGCAAGTGGT+TGG - chr4_1:1471569-1471588 None:intergenic 35.0%
AACTTACCACAAATGTGTTG+GGG - chr4_1:1471607-1471626 None:intergenic 35.0%
GTAACTTACCACAAATGTGT+TGG - chr4_1:1471609-1471628 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG - chr4_1:1471711-1471730 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG - chr4_1:1471752-1471771 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG - chr4_1:1472084-1472103 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG + chr4_1:1472082-1472101 Msa0528620:CDS 35.0%
ATACAAGGTTCGTCATATTG+GGG + chr4_1:1472084-1472103 Msa0528620:CDS 35.0%
TAGCTCTCTGTTCTTTAGTT+AGG - chr4_1:1472257-1472276 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG - chr4_1:1472326-1472345 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG - chr4_1:1472327-1472346 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG + chr4_1:1472414-1472433 Msa0528620:three_prime_UTR 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG + chr4_1:1472599-1472618 Msa0528620:three_prime_UTR 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG - chr4_1:1472611-1472630 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG - chr4_1:1472657-1472676 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG - chr4_1:1472661-1472680 None:intergenic 35.0%
GAATTAAATCGTCTGAGAGT+TGG + chr4_1:1472801-1472820 Msa0528620:three_prime_UTR 35.0%
GAACAACTAGCAATATGGTT+TGG - chr4_1:1472861-1472880 Msa0528630:CDS 35.0%
CCCATGAAAAATGACAGTAA+TGG + chr4_1:1472936-1472955 Msa0528620:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG - chr4_1:1473315-1473334 Msa0528630:CDS 35.0%
! CCTTATACGATCTAAGCTTT+TGG + chr4_1:1473312-1473331 Msa0528620:intron 35.0%
CGGTATATTTGTGAATGATC+GGG - chr4_1:1473363-1473382 Msa0528630:CDS 35.0%
GCGGTATATTTGTGAATGAT+CGG - chr4_1:1473364-1473383 Msa0528630:CDS 35.0%
!! GAGACAGCATTGATATGAGA+TGG - chr4_1:1470044-1470063 None:intergenic 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG + chr4_1:1470174-1470193 Msa0528620:CDS 40.0%
GAGGGTTGCAATGTATTTGA+AGG + chr4_1:1470258-1470277 Msa0528620:CDS 40.0%
AGACCACTTGCATGAAGAAT+GGG + chr4_1:1470349-1470368 Msa0528620:CDS 40.0%
CTTTCTACACAAATTGGAGG+TGG + chr4_1:1470382-1470401 Msa0528620:CDS 40.0%
ACTTCGCCTTGATTACTCTT+AGG + chr4_1:1470456-1470475 Msa0528620:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG - chr4_1:1470465-1470484 None:intergenic 40.0%
TGAAGTTGTTGCACATGTTG+AGG + chr4_1:1470590-1470609 Msa0528620:CDS 40.0%
CATAGGTGGAATTCTTTGGA+GGG - chr4_1:1470713-1470732 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG - chr4_1:1470714-1470733 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG + chr4_1:1471056-1471075 Msa0528620:intron 40.0%
TCCTGCCAAAACAAAGCTAT+AGG - chr4_1:1471060-1471079 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG + chr4_1:1471149-1471168 Msa0528620:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG + chr4_1:1471177-1471196 Msa0528620:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG + chr4_1:1471187-1471206 Msa0528620:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG - chr4_1:1471263-1471282 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG - chr4_1:1471264-1471283 None:intergenic 40.0%
GTATATCTATAGACCTTGGC+TGG + chr4_1:1471282-1471301 Msa0528620:intron 40.0%
!! CAAGTACTGAACTATGCTCA+CGG - chr4_1:1471311-1471330 None:intergenic 40.0%
TTCATCTGGTGATCCATATC+TGG - chr4_1:1471472-1471491 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG - chr4_1:1471497-1471516 None:intergenic 40.0%
AAAGTGAAGCCCACATGATT+TGG + chr4_1:1471739-1471758 Msa0528620:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG + chr4_1:1472013-1472032 Msa0528620:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG + chr4_1:1472014-1472033 Msa0528620:intron 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG + chr4_1:1472286-1472305 Msa0528620:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG + chr4_1:1472417-1472436 Msa0528620:three_prime_UTR 40.0%
! TTCCAACACCTTTTGCCTTT+TGG + chr4_1:1472487-1472506 Msa0528620:three_prime_UTR 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG - chr4_1:1472492-1472511 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG - chr4_1:1472658-1472677 None:intergenic 40.0%
TTAAATCGTCTGAGAGTTGG+TGG + chr4_1:1472804-1472823 Msa0528620:three_prime_UTR 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG - chr4_1:1472889-1472908 Msa0528630:CDS 40.0%
ATGCATTCTCTTCGAAGAAG+AGG - chr4_1:1472899-1472918 Msa0528630:CDS 40.0%
TCAAGGAAACGATGAAGATG+TGG + chr4_1:1473043-1473062 Msa0528620:intron 40.0%
GATACAAAGCGTGAAGATAG+CGG - chr4_1:1473383-1473402 Msa0528630:CDS 40.0%
TCAAGTCTTCGATTGATCGC+CGG + chr4_1:1470064-1470083 Msa0528620:CDS 45.0%
GCTTGCTCTTCAAGCTATCT+AGG - chr4_1:1470152-1470171 None:intergenic 45.0%
TGCCGTAGAGCTGAAAAACA+TGG - chr4_1:1470179-1470198 None:intergenic 45.0%
TGGTGGAAGGAATCGATTAC+CGG + chr4_1:1470206-1470225 Msa0528620:CDS 45.0%
! ATTACCGGTTGTTGTGTTGC+CGG + chr4_1:1470221-1470240 Msa0528620:CDS 45.0%
AGAAGTGAGTTGCCCTTACT+TGG + chr4_1:1470320-1470339 Msa0528620:CDS 45.0%
TGGTCTGCTTGACCAAGTAA+GGG - chr4_1:1470335-1470354 None:intergenic 45.0%
CAGACCACTTGCATGAAGAA+TGG + chr4_1:1470348-1470367 Msa0528620:CDS 45.0%
TCTCCCATTCTTCATGCAAG+TGG - chr4_1:1470355-1470374 None:intergenic 45.0%
!! GGAAAAGTGTTGGCTACCTT+GGG - chr4_1:1470428-1470447 None:intergenic 45.0%
!! TGGAAAAGTGTTGGCTACCT+TGG - chr4_1:1470429-1470448 None:intergenic 45.0%
TGGAGGGATTTCTTTCCTTC+AGG - chr4_1:1470697-1470716 None:intergenic 45.0%
ATACTACTGGGCTCCATTCA+TGG + chr4_1:1471098-1471117 Msa0528620:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG + chr4_1:1471192-1471211 Msa0528620:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG + chr4_1:1471206-1471225 Msa0528620:CDS 45.0%
TGGTGTTCGAGAGCTATGTT+TGG + chr4_1:1471226-1471245 Msa0528620:CDS 45.0%
TGTTCGAGAGCTATGTTTGG+TGG + chr4_1:1471229-1471248 Msa0528620:CDS 45.0%
CGTCACGACAGCATATAAGT+TGG + chr4_1:1471506-1471525 Msa0528620:CDS 45.0%
GTATGTCCCCAACACATTTG+TGG + chr4_1:1471598-1471617 Msa0528620:CDS 45.0%
! AAGCAGTTTTCGTCACTTCC+TGG - chr4_1:1472048-1472067 None:intergenic 45.0%
GATGCTCACACCTCAGTTTA+TGG + chr4_1:1472213-1472232 Msa0528620:CDS 45.0%
TCAGTTTATGGCGAGCGAAA+GGG + chr4_1:1472225-1472244 Msa0528620:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG + chr4_1:1472297-1472316 Msa0528620:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG + chr4_1:1472298-1472317 Msa0528620:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG + chr4_1:1472299-1472318 Msa0528620:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG - chr4_1:1472745-1472764 Msa0528630:CDS 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG - chr4_1:1472746-1472765 Msa0528630:CDS 45.0%
CGTTGAGTTCACGTATGTTC+TGG + chr4_1:1472779-1472798 Msa0528620:three_prime_UTR 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG + chr4_1:1472819-1472838 Msa0528620:three_prime_UTR 45.0%
TCTTCGAAGAGAATGCATCC+TGG + chr4_1:1472901-1472920 Msa0528620:three_prime_UTR 45.0%
GTGGTCTGCTTGACCAAGTA+AGG - chr4_1:1470336-1470355 None:intergenic 50.0%
!! AAAGTGTTGGCTACCTTGGG+AGG - chr4_1:1470425-1470444 None:intergenic 50.0%
TGGCAAACATTGGCAAGGAG+TGG + chr4_1:1471197-1471216 Msa0528620:CDS 50.0%
CTTTCGCTCGCCATAAACTG+AGG - chr4_1:1472226-1472245 None:intergenic 50.0%
CTCAGTTTATGGCGAGCGAA+AGG + chr4_1:1472224-1472243 Msa0528620:CDS 50.0%
CATGGGACAGAAAAGACTCC+AGG - chr4_1:1472922-1472941 Msa0528630:intron 50.0%
CAGCTCTACGGCATGTCATC+TGG + chr4_1:1470186-1470205 Msa0528620:CDS 55.0%
CTCTACGGCATGTCATCTGG+TGG + chr4_1:1470189-1470208 Msa0528620:CDS 55.0%
ACGGCATGTCATCTGGTGGA+AGG + chr4_1:1470193-1470212 Msa0528620:CDS 55.0%
TCCTCCGGCAACACAACAAC+CGG - chr4_1:1470228-1470247 None:intergenic 55.0%
AATTGGAGGTGGCAGCCTCA+TGG + chr4_1:1470393-1470412 Msa0528620:CDS 55.0%
CTTGGGAGGTTGCATCCATG+AGG - chr4_1:1470411-1470430 None:intergenic 55.0%
CTCATGGATGCAACCTCCCA+AGG + chr4_1:1470409-1470428 Msa0528620:CDS 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG + chr4_1:1472019-1472038 Msa0528620:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG + chr4_1:1472090-1472109 Msa0528620:CDS 55.0%
TACCTGGGGTCCCAGATACA+TGG + chr4_1:1472313-1472332 Msa0528620:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG - chr4_1:1472318-1472337 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG - chr4_1:1472840-1472859 Msa0528630:CDS 55.0%
ACCGGTTGTTGTGTTGCCGG+AGG + chr4_1:1470224-1470243 Msa0528620:CDS 60.0%
GTTGCCGGAGGATCGCATTG+AGG + chr4_1:1470236-1470255 Msa0528620:CDS 60.0%
CCCTCCTCAATGCGATCCTC+CGG - chr4_1:1470243-1470262 None:intergenic 60.0%
CCGGAGGATCGCATTGAGGA+GGG + chr4_1:1470240-1470259 Msa0528620:CDS 60.0%
ATGCTCACGGAGACCAGCCA+AGG - chr4_1:1471298-1471317 None:intergenic 60.0%
TGGCTTCCATTCCCAGCTCC+TGG - chr4_1:1472028-1472047 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG + chr4_1:1472027-1472046 Msa0528620:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG + chr4_1:1470239-1470258 Msa0528620:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1470004 1473450 1470004 ID=Msa0528620;Name=Msa0528620
chr4_1 mRNA 1470004 1473450 1470004 ID=Msa0528620-mRNA-1;Parent=Msa0528620;Name=Msa0528620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|1|1|1|0.8|0.66|6|682|417
chr4_1 exon 1470004 1470430 1470004 ID=Msa0528620-mRNA-1:exon:413;Parent=Msa0528620-mRNA-1
chr4_1 exon 1470579 1470750 1470579 ID=Msa0528620-mRNA-1:exon:414;Parent=Msa0528620-mRNA-1
chr4_1 exon 1471078 1471277 1471078 ID=Msa0528620-mRNA-1:exon:415;Parent=Msa0528620-mRNA-1
chr4_1 exon 1471473 1471619 1471473 ID=Msa0528620-mRNA-1:exon:416;Parent=Msa0528620-mRNA-1
chr4_1 exon 1472029 1472940 1472029 ID=Msa0528620-mRNA-1:exon:417;Parent=Msa0528620-mRNA-1
chr4_1 exon 1473323 1473450 1473323 ID=Msa0528620-mRNA-1:exon:418;Parent=Msa0528620-mRNA-1
chr4_1 five_prime_UTR 1470004 1470053 1470004 ID=Msa0528620-mRNA-1:five_prime_utr;Parent=Msa0528620-mRNA-1
chr4_1 CDS 1470054 1470430 1470054 ID=Msa0528620-mRNA-1:cds;Parent=Msa0528620-mRNA-1
chr4_1 CDS 1470579 1470750 1470579 ID=Msa0528620-mRNA-1:cds;Parent=Msa0528620-mRNA-1
chr4_1 CDS 1471078 1471277 1471078 ID=Msa0528620-mRNA-1:cds;Parent=Msa0528620-mRNA-1
chr4_1 CDS 1471473 1471619 1471473 ID=Msa0528620-mRNA-1:cds;Parent=Msa0528620-mRNA-1
chr4_1 CDS 1472029 1472386 1472029 ID=Msa0528620-mRNA-1:cds;Parent=Msa0528620-mRNA-1
chr4_1 three_prime_UTR 1472387 1472940 1472387 ID=Msa0528620-mRNA-1:three_prime_utr;Parent=Msa0528620-mRNA-1
chr4_1 three_prime_UTR 1473323 1473450 1473323 ID=Msa0528620-mRNA-1:three_prime_utr;Parent=Msa0528620-mRNA-1
Gene Sequence

>Msa0528620

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa0528620

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*