AlfalfaGEDB | Msa0389620

M. sativa cultivar zhongmu-4 / Msa0389620

KEGG: -
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389620	XP_013445523.1	97.362	417	11	0	1	417	1	417	0.0	852

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389620	sp\|Q1PFD9\|TBL31_ARATH	69.471	416	122	2	2	416	1	412	0.0	616

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389620	A0A072TPV7	97.362	417	11	0	1	417	1	417	0.0	852

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0389620	Msa0528620	0.982173	2.048104e-154	-8.615850e-47
Msa0389620	Msa0946270	0.800769	1.233875e-48	-8.615850e-47
Msa0389620	Msa1191060	0.971215	8.164756e-133	-8.615850e-47
Msa0389620	Msa1191110	0.960027	4.271901e-118	-8.615850e-47
Msa0389620	Msa1285450	0.973658	8.384327e-137	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389620	MtrunA17_Chr8g0360521	97.362	417	11	0	1	417	1	417	0.0	852
Msa0389620	MtrunA17_Chr3g0113671	50.704	355	166	4	60	409	99	449	4.52e-130	382
Msa0389620	MtrunA17_Chr5g0437601	49.857	349	170	3	66	410	78	425	1.45e-129	380
Msa0389620	MtrunA17_Chr4g0005491	46.883	401	192	7	18	410	21	408	4.40e-127	373
Msa0389620	MtrunA17_Chr4g0006991	48.725	353	173	3	64	409	76	427	1.06e-126	372
Msa0389620	MtrunA17_Chr7g0242701	49.008	353	172	3	64	409	76	427	2.75e-124	366
Msa0389620	MtrunA17_Chr3g0114101	49.709	344	168	3	71	410	89	431	5.81e-124	366
Msa0389620	MtrunA17_Chr4g0005481	49.123	342	172	2	69	409	106	446	7.49e-123	363
Msa0389620	MtrunA17_Chr7g0243301	43.902	410	208	8	12	410	12	410	9.64e-120	354
Msa0389620	MtrunA17_Chr5g0437291	46.000	350	181	4	69	410	163	512	1.69e-115	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389620	AT1G73140.1	69.471	416	122	2	2	416	1	412	0.0	616
Msa0389620	AT5G01360.2	49.587	363	176	2	54	409	16	378	8.11e-134	389
Msa0389620	AT5G01360.1	49.587	363	176	2	54	409	72	434	2.65e-133	390
Msa0389620	AT2G40150.1	49.861	361	166	3	60	409	64	420	3.27e-131	384
Msa0389620	AT3G55990.1	50.432	347	167	2	69	410	138	484	1.48e-130	385
Msa0389620	AT2G40320.1	48.711	349	174	2	66	410	76	423	9.05e-124	365
Msa0389620	AT3G11030.1	48.571	350	174	4	66	410	101	449	2.37e-120	357
Msa0389620	AT5G01620.2	46.398	347	177	4	68	409	107	449	1.91e-119	355
Msa0389620	AT5G01620.1	46.398	347	177	4	68	409	107	449	1.91e-119	355
Msa0389620	AT5G01620.3	46.398	347	177	4	68	409	115	457	2.83e-119	355

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Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTTGGCTACCTTGGG+AGG	0.628073	3_1:-94561058	None:intergenic
AACAAAAGAATGATGTTTAT+TGG	0.212670	3_1:+94561249	Msa0389620:CDS
AACAGATCATAGACTCAAAT+TGG	0.319491	3_1:-94561290	None:intergenic
AACATGTGCAACAACTTCAA+AGG	0.571932	3_1:-94561222	None:intergenic
AACTTACCACAAATGTGTTG+GGG	0.596950	3_1:-94562240	None:intergenic
AAGCATGGCAAACATTGGCA+AGG	0.639024	3_1:+94561828	Msa0389620:CDS
AATACAAGGTTCGTCATATT+GGG	0.282741	3_1:+94562717	Msa0389620:CDS
AATATGACGAACCTTGTATT+GGG	0.455104	3_1:-94562714	None:intergenic
AATGAATCATACCCAATACA+AGG	0.626400	3_1:+94562703	Msa0389620:CDS
AATTGGAGGTGGCAGCCTCA+TGG	0.531507	3_1:+94561029	Msa0389620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTAATCTTTGCAGTTACA+AGG	+	chr3_1:94560757-94560776	Msa0389620:CDS	30.0%
CAATGTATTTGAAGGGAAAT+GGG	+	chr3_1:94560902-94560921	Msa0389620:CDS	30.0%
CAATTTGTGTAGAAAGAATC+AGG	-	chr3_1:94561014-94561033	None:intergenic	30.0%
CTGATTCTTTCTACACAAAT+TGG	+	chr3_1:94561012-94561031	Msa0389620:CDS	30.0%
ATTCTTTCTACACAAATTGG+AGG	+	chr3_1:94561015-94561034	Msa0389620:CDS	30.0%
AACAGATCATAGACTCAAAT+TGG	-	chr3_1:94561293-94561312	None:intergenic	30.0%
ATTTGAGTCTATGATCTGTT+TGG	+	chr3_1:94561293-94561312	Msa0389620:CDS	30.0%
TGATCATGCAACAAATCATA+CGG	+	chr3_1:94561770-94561789	Msa0389620:CDS	30.0%
CAAATCATACGGTACATAAA+CGG	+	chr3_1:94561781-94561800	Msa0389620:CDS	30.0%
AGTACTTGAATGAATGTTCA+TGG	+	chr3_1:94561959-94561978	Msa0389620:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	94560640	94564087	94560640	ID=Msa0389620;Name=Msa0389620
chr3_1	mRNA	94560640	94564087	94560640	ID=Msa0389620-mRNA-1;Parent=Msa0389620;Name=Msa0389620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50\|1\|1\|1\|0.8\|0.66\|6\|682\|417
chr3_1	exon	94560640	94561066	94560640	ID=Msa0389620-mRNA-1:exon:26859;Parent=Msa0389620-mRNA-1
chr3_1	exon	94561215	94561386	94561215	ID=Msa0389620-mRNA-1:exon:26860;Parent=Msa0389620-mRNA-1
chr3_1	exon	94561714	94561913	94561714	ID=Msa0389620-mRNA-1:exon:26861;Parent=Msa0389620-mRNA-1
chr3_1	exon	94562109	94562255	94562109	ID=Msa0389620-mRNA-1:exon:26862;Parent=Msa0389620-mRNA-1
chr3_1	exon	94562663	94563574	94562663	ID=Msa0389620-mRNA-1:exon:26863;Parent=Msa0389620-mRNA-1
chr3_1	exon	94563960	94564087	94563960	ID=Msa0389620-mRNA-1:exon:26864;Parent=Msa0389620-mRNA-1
chr3_1	five_prime_UTR	94560640	94560689	94560640	ID=Msa0389620-mRNA-1:five_prime_utr;Parent=Msa0389620-mRNA-1
chr3_1	CDS	94560690	94561066	94560690	ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1	CDS	94561215	94561386	94561215	ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1	CDS	94561714	94561913	94561714	ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1	CDS	94562109	94562255	94562109	ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1	CDS	94562663	94563020	94562663	ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1	three_prime_UTR	94563021	94563574	94563021	ID=Msa0389620-mRNA-1:three_prime_utr;Parent=Msa0389620-mRNA-1
chr3_1	three_prime_UTR	94563960	94564087	94563960	ID=Msa0389620-mRNA-1:three_prime_utr;Parent=Msa0389620-mRNA-1

Gene Sequence

>Msa0389620

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA

Protein sequence

>Msa0389620

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*