AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389620 MtrunA17_Chr8g0360521 97.362 417 11 0 1 417 1 417 0.0 852
Msa0389620 MtrunA17_Chr3g0113671 50.704 355 166 4 60 409 99 449 4.52e-130 382
Msa0389620 MtrunA17_Chr5g0437601 49.857 349 170 3 66 410 78 425 1.45e-129 380
Msa0389620 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 4.40e-127 373
Msa0389620 MtrunA17_Chr4g0006991 48.725 353 173 3 64 409 76 427 1.06e-126 372
Msa0389620 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.75e-124 366
Msa0389620 MtrunA17_Chr3g0114101 49.709 344 168 3 71 410 89 431 5.81e-124 366
Msa0389620 MtrunA17_Chr4g0005481 49.123 342 172 2 69 409 106 446 7.49e-123 363
Msa0389620 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 9.64e-120 354
Msa0389620 MtrunA17_Chr5g0437291 46.000 350 181 4 69 410 163 512 1.69e-115 347
Msa0389620 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 4.47e-85 264
Msa0389620 MtrunA17_Chr1g0210771 39.766 342 185 9 71 409 59 382 1.59e-82 258
Msa0389620 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 8.26e-82 256
Msa0389620 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.67e-78 246
Msa0389620 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.91e-77 245
Msa0389620 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 5.27e-75 244
Msa0389620 MtrunA17_Chr4g0068111 34.699 366 200 8 71 416 114 460 1.14e-74 240
Msa0389620 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa0389620 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 4.58e-74 235
Msa0389620 MtrunA17_Chr7g0259711 36.639 363 193 12 69 411 89 434 1.55e-73 237
Msa0389620 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 3.17e-73 233
Msa0389620 MtrunA17_Chr5g0413271 35.457 361 204 8 62 411 136 478 3.56e-73 237
Msa0389620 MtrunA17_Chr2g0287901 39.726 365 186 14 65 411 91 439 3.75e-73 236
Msa0389620 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 6.01e-73 232
Msa0389620 MtrunA17_Chr4g0071391 35.613 351 201 11 71 409 109 446 1.04e-72 235
Msa0389620 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 7.24e-72 229
Msa0389620 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 5.20e-71 228
Msa0389620 MtrunA17_Chr7g0269991 34.734 357 189 10 71 409 137 467 2.86e-70 229
Msa0389620 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 3.36e-70 226
Msa0389620 MtrunA17_Chr4g0045941 35.072 345 197 8 68 409 30 350 1.01e-68 221
Msa0389620 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 1.41e-68 221
Msa0389620 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.08e-67 224
Msa0389620 MtrunA17_Chr3g0085071 35.244 349 195 8 64 407 39 361 5.33e-67 217
Msa0389620 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 3.05e-66 215
Msa0389620 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 1.85e-64 210
Msa0389620 MtrunA17_Chr8g0368461 32.973 370 206 10 69 411 176 530 1.14e-62 211
Msa0389620 MtrunA17_Chr3g0126021 32.249 369 210 9 59 411 117 461 4.85e-61 204
Msa0389620 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 8.52e-59 198
Msa0389620 MtrunA17_Chr1g0209921 34.783 230 140 6 71 297 44 266 6.83e-49 167
Msa0389620 MtrunA17_Chr1g0178081 30.000 360 178 9 69 417 53 349 6.20e-46 162
Msa0389620 MtrunA17_Chr6g0476041 28.421 380 219 12 67 415 163 520 6.05e-45 163
Msa0389620 MtrunA17_Chr1g0188191 28.496 379 224 15 67 417 230 589 8.24e-44 161
Msa0389620 MtrunA17_Chr6g0456691 28.404 426 243 15 14 409 26 419 4.59e-41 150
Msa0389620 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 5.50e-41 149
Msa0389620 MtrunA17_Chr8g0347321 29.444 360 218 13 71 409 95 439 6.23e-41 150
Msa0389620 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.77e-41 149
Msa0389620 MtrunA17_Chr6g0456681 27.528 356 226 11 69 405 62 404 1.69e-38 143
Msa0389620 MtrunA17_Chr2g0283851 29.917 361 206 16 72 405 56 396 4.13e-38 142
Msa0389620 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 6.33e-38 142
Msa0389620 MtrunA17_Chr5g0414091 27.123 424 241 17 18 405 36 427 7.46e-38 142
Msa0389620 MtrunA17_Chr8g0384421 28.926 363 215 12 69 409 131 472 7.46e-38 142
Msa0389620 MtrunA17_Chr3g0140371 27.520 367 224 11 68 411 15 362 7.47e-38 140
Msa0389620 MtrunA17_Chr4g0049421 28.226 372 223 16 71 417 48 400 7.15e-36 136
Msa0389620 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 2.79e-35 135
Msa0389620 MtrunA17_Chr8g0387921 29.121 364 207 16 71 405 74 415 4.40e-35 134
Msa0389620 MtrunA17_Chr5g0414041 27.273 363 228 10 71 411 87 435 9.36e-34 131
Msa0389620 MtrunA17_Chr4g0070341 27.749 382 195 16 69 409 130 471 5.47e-33 129
Msa0389620 MtrunA17_Chr6g0455901 26.005 373 219 15 69 409 69 416 3.03e-29 118
Msa0389620 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 1.39e-27 114
Msa0389620 MtrunA17_Chr7g0221271 33.939 165 105 3 1 163 8 170 2.10e-26 105
Msa0389620 MtrunA17_Chr7g0221291 33.333 165 106 3 1 163 8 170 3.82e-25 100
Msa0389620 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 1.03e-16 75.5
Msa0389620 MtrunA17_Chr2g0287931 32.540 126 76 3 132 249 2 126 2.40e-15 72.4
Msa0389620 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.20e-15 71.2
Msa0389620 MtrunA17_Chr5g0429191 61.224 49 13 2 355 402 2 45 2.69e-12 61.2
Msa0389620 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.80e-12 62.4
Msa0389620 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 3.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389620 AT1G73140.1 69.471 416 122 2 2 416 1 412 0.0 616
Msa0389620 AT5G01360.2 49.587 363 176 2 54 409 16 378 8.11e-134 389
Msa0389620 AT5G01360.1 49.587 363 176 2 54 409 72 434 2.65e-133 390
Msa0389620 AT2G40150.1 49.861 361 166 3 60 409 64 420 3.27e-131 384
Msa0389620 AT3G55990.1 50.432 347 167 2 69 410 138 484 1.48e-130 385
Msa0389620 AT2G40320.1 48.711 349 174 2 66 410 76 423 9.05e-124 365
Msa0389620 AT3G11030.1 48.571 350 174 4 66 410 101 449 2.37e-120 357
Msa0389620 AT5G01620.2 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0389620 AT5G01620.1 46.398 347 177 4 68 409 107 449 1.91e-119 355
Msa0389620 AT5G01620.3 46.398 347 177 4 68 409 115 457 2.83e-119 355
Msa0389620 AT2G40160.1 41.608 423 230 5 4 409 1 423 3.29e-117 348
Msa0389620 AT2G40160.2 41.509 424 231 5 4 410 1 424 5.24e-117 348
Msa0389620 AT2G38320.1 43.868 424 204 8 1 413 8 408 1.08e-116 347
Msa0389620 AT2G38320.2 46.483 327 164 5 96 413 1 325 1.18e-99 300
Msa0389620 AT3G54260.1 39.710 345 187 7 71 412 51 377 1.27e-82 258
Msa0389620 AT2G30900.1 38.040 347 185 10 71 410 43 366 1.96e-80 252
Msa0389620 AT3G62390.1 37.500 360 193 11 64 410 132 472 3.24e-79 253
Msa0389620 AT2G40160.3 40.514 311 169 4 4 298 1 311 4.62e-79 247
Msa0389620 AT5G20590.1 36.441 354 199 9 70 410 140 480 9.58e-79 251
Msa0389620 AT5G58600.1 36.599 347 202 6 71 410 66 401 3.43e-77 245
Msa0389620 AT3G12060.1 37.079 356 197 8 69 410 194 536 5.28e-77 249
Msa0389620 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.94e-76 241
Msa0389620 AT1G29050.1 35.262 363 205 8 50 409 43 378 6.91e-75 238
Msa0389620 AT2G31110.2 38.304 342 184 8 71 409 45 362 2.62e-74 236
Msa0389620 AT5G06700.1 37.110 353 199 10 69 409 253 594 9.15e-74 242
Msa0389620 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.32e-73 235
Msa0389620 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.75e-73 237
Msa0389620 AT3G06080.2 36.975 357 199 8 70 411 102 447 1.68e-72 235
Msa0389620 AT1G60790.1 33.938 386 216 12 52 411 162 534 6.59e-69 228
Msa0389620 AT2G30010.1 33.867 375 208 10 56 410 43 397 7.93e-69 223
Msa0389620 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.08e-68 222
Msa0389620 AT2G30010.2 33.867 375 208 10 56 410 86 440 1.40e-68 224
Msa0389620 AT3G14850.2 34.582 347 201 8 69 411 32 356 3.15e-68 220
Msa0389620 AT5G19160.1 34.239 368 208 10 70 417 98 451 3.78e-68 223
Msa0389620 AT5G06230.2 35.150 367 206 9 67 414 17 370 9.53e-58 194
Msa0389620 AT1G48880.1 32.113 355 199 13 71 411 115 441 1.30e-57 195
Msa0389620 AT5G06230.1 35.150 367 206 9 67 414 58 411 2.36e-57 194
Msa0389620 AT1G78710.2 30.294 340 164 8 71 410 31 297 3.94e-56 187
Msa0389620 AT3G11570.1 33.913 345 183 12 93 414 103 425 2.76e-52 181
Msa0389620 AT3G62390.2 36.842 247 142 7 64 300 132 374 1.68e-51 178
Msa0389620 AT2G30900.2 38.496 226 124 7 71 290 43 259 4.07e-51 173
Msa0389620 AT5G20590.2 35.833 240 141 5 70 298 140 377 6.93e-51 176
Msa0389620 AT2G31110.3 38.222 225 128 4 71 292 45 261 1.45e-50 172
Msa0389620 AT3G06080.1 36.402 239 141 4 70 298 102 339 2.59e-48 168
Msa0389620 AT5G19160.2 34.728 239 145 4 70 298 98 335 3.60e-48 168
Msa0389620 AT5G58600.2 35.931 231 137 4 71 297 66 289 7.35e-48 165
Msa0389620 AT2G34070.2 32.353 272 157 6 142 409 1 249 4.47e-46 159
Msa0389620 AT5G64020.1 30.518 367 212 13 71 409 57 408 6.27e-43 155
Msa0389620 AT5G51640.1 27.907 387 221 13 64 415 131 494 8.22e-43 157
Msa0389620 AT4G25360.1 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0389620 AT4G25360.2 27.569 399 228 14 58 417 156 532 1.65e-42 157
Msa0389620 AT5G64470.3 29.201 363 220 15 71 414 55 399 3.15e-42 153
Msa0389620 AT1G70230.1 26.912 353 228 11 71 411 79 413 3.11e-41 151
Msa0389620 AT3G14850.1 31.752 274 162 7 142 411 1 253 1.47e-40 145
Msa0389620 AT3G02440.1 28.531 354 218 11 71 405 127 464 2.06e-40 150
Msa0389620 AT3G02440.2 28.531 354 218 11 71 405 135 472 2.14e-40 150
Msa0389620 AT5G15890.1 28.307 378 228 10 50 405 162 518 1.34e-39 149
Msa0389620 AT5G20680.6 28.534 382 192 14 69 409 116 457 2.02e-38 144
Msa0389620 AT2G37720.1 29.787 376 191 16 71 409 143 482 2.13e-38 145
Msa0389620 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa0389620 AT2G14530.1 27.989 368 213 12 71 409 62 406 3.96e-38 142
Msa0389620 AT5G20680.2 28.534 382 192 14 69 409 192 533 4.70e-38 144
Msa0389620 AT5G20680.4 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0389620 AT5G20680.1 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0389620 AT5G20680.3 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0389620 AT5G20680.5 28.534 382 192 14 69 409 210 551 5.22e-38 144
Msa0389620 AT4G23790.1 26.711 453 244 21 6 405 6 423 1.81e-37 141
Msa0389620 AT1G01430.1 26.250 400 259 12 34 410 62 448 5.51e-37 140
Msa0389620 AT5G06230.3 34.538 249 142 6 67 297 58 303 1.54e-36 136
Msa0389620 AT5G15900.1 28.255 361 223 11 69 409 65 409 1.12e-35 136
Msa0389620 AT5G15900.2 28.255 361 223 11 69 409 84 428 1.12e-35 136
Msa0389620 AT4G11090.1 26.075 372 227 13 62 405 70 421 3.73e-35 135
Msa0389620 AT4G01080.1 26.503 366 224 13 63 405 83 426 8.09e-35 134
Msa0389620 AT3G28150.1 29.223 373 208 16 66 409 65 410 2.00e-34 132
Msa0389620 AT2G31110.1 35.345 232 124 7 181 409 6 214 1.15e-33 125
Msa0389620 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.73e-21 94.7
Msa0389620 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.77e-21 95.1

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 3_1:-94562913 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 3_1:-94560738 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 3_1:-94562958 None:intergenic
GATGCTCACACCTCAGTTTA+TGG 0.206651 3_1:+94562847 Msa0389620:CDS
AACAAAAGAATGATGTTTAT+TGG 0.212670 3_1:+94561249 Msa0389620:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 3_1:+94561012 Msa0389620:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 3_1:+94562716 Msa0389620:CDS
TAGCTCTCTGTTCTTTAGTT+AGG 0.246525 3_1:-94562888 None:intergenic
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 3_1:-94561330 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 3_1:-94561350 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 3_1:-94562130 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 3_1:+94562717 Msa0389620:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 3_1:+94563949 Msa0389620:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 3_1:+94561842 Msa0389620:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 3_1:+94560901 Msa0389620:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 3_1:+94562931 Msa0389620:CDS
AACAGATCATAGACTCAAAT+TGG 0.319491 3_1:-94561290 None:intergenic
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 3_1:-94560785 None:intergenic
ATACTACTGGGCTCCATTCA+TGG 0.353905 3_1:+94561734 Msa0389620:CDS
CGTTGAGTTCACGTATGTTC+TGG 0.354464 3_1:+94563413 Msa0389620:three_prime_UTR
TCAACTTTAAATATCTTCAT+AGG 0.360087 3_1:-94561363 None:intergenic
ATATAATTGGGAAAATTGAT+TGG 0.370417 3_1:-94560725 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 3_1:+94560902 Msa0389620:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 3_1:-94563259 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 3_1:+94560822 Msa0389620:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 3_1:-94562119 None:intergenic
TAACTTACCACAAATGTGTT+GGG 0.386349 3_1:-94562241 None:intergenic
ATGCATCGATTGAATACTAC+TGG 0.392477 3_1:+94561721 Msa0389620:CDS
ATTTGAGTCTATGATCTGTT+TGG 0.397442 3_1:+94561293 Msa0389620:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 3_1:-94562810 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 3_1:-94562715 None:intergenic
AGTATGAACAACTAGCAATA+TGG 0.407962 3_1:-94563497 Msa0389630:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 3_1:-94560969 None:intergenic
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 3_1:-94563242 None:intergenic
AGAAGTGAGTTGCCCTTACT+TGG 0.416247 3_1:+94560956 Msa0389620:CDS
ACGCTCTATTAAATTAAAGT+TGG 0.428012 3_1:-94564060 Msa0389630:CDS
TGGTGGAAGGAATCGATTAC+CGG 0.428048 3_1:+94560842 Msa0389620:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 3_1:-94563222 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 3_1:+94561781 Msa0389620:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 3_1:-94561011 None:intergenic
ATTACCGGTTGTTGTGTTGC+CGG 0.437991 3_1:+94560857 Msa0389620:CDS
TCTTAAACAGATATGCATAT+AGG 0.438576 3_1:-94562978 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 3_1:-94560737 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 3_1:-94563492 Msa0389630:CDS
GAAATTGATTCAACCATGAA+TGG 0.451055 3_1:-94561747 None:intergenic
TTGGGAAAATTGATTGGATC+CGG 0.452959 3_1:-94560719 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 3_1:-94562714 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 3_1:+94563048 Msa0389620:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 3_1:-94560876 None:intergenic
TATTTGAAGGGAAATGGGTA+TGG 0.465084 3_1:+94560907 Msa0389620:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 3_1:+94560757 Msa0389620:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 3_1:+94560984 Msa0389620:CDS
TCCTCCGGCAACACAACAAC+CGG 0.467189 3_1:-94560861 None:intergenic
GAGGGTTGCAATGTATTTGA+AGG 0.469336 3_1:+94560894 Msa0389620:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 3_1:+94562932 Msa0389620:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 3_1:-94561896 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 3_1:-94564057 Msa0389630:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 3_1:+94560985 Msa0389620:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 3_1:+94562661 Msa0389620:intron
GGAGATGCTGATATCGAGCC+AGG 0.490893 3_1:-94563471 Msa0389630:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 3_1:-94563123 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 3_1:-94561346 None:intergenic
CGGTATATTTGTGAATGATC+GGG 0.491737 3_1:-94563997 Msa0389630:CDS
CTCAGTTTATGGCGAGCGAA+AGG 0.496603 3_1:+94562858 Msa0389620:CDS
GCGGTATATTTGTGAATGAT+CGG 0.497341 3_1:-94563998 Msa0389630:CDS
ATTCTTTCTACACAAATTGG+AGG 0.504866 3_1:+94561015 Msa0389620:CDS
GTATGTCCCCAACACATTTG+TGG 0.505067 3_1:+94562234 Msa0389620:CDS
CATGGGACAGAAAAGACTCC+AGG 0.506317 3_1:-94563553 Msa0389630:intron
CATTGATATGAGATGGTTGA+AGG 0.506584 3_1:-94560670 None:intergenic
GCCGGAGGATCGCATTGAGG+AGG 0.515226 3_1:+94560875 Msa0389620:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 3_1:+94562653 Msa0389620:intron
CAACTCACTTCTTCATAAAG+AGG 0.520659 3_1:-94560945 None:intergenic
TATACAATCCAAAAGGCAAA+AGG 0.521640 3_1:-94563129 None:intergenic
TCATAGGTGGAATTCTTTGG+AGG 0.523486 3_1:-94561347 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 3_1:-94562957 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 3_1:-94563101 None:intergenic
GTAACTTACCACAAATGTGT+TGG 0.530098 3_1:-94562242 None:intergenic
TACCTGGGGTCCCAGATACA+TGG 0.530934 3_1:+94562947 Msa0389620:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 3_1:+94561029 Msa0389620:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 3_1:-94563292 None:intergenic
TTCCATGTATCTGGGACCCC+AGG 0.534611 3_1:-94562949 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 3_1:+94562724 Msa0389620:CDS
TCAGTTTATGGCGAGCGAAA+GGG 0.538195 3_1:+94562859 Msa0389620:CDS
TCTTCGAAGAGAATGCATCC+TGG 0.541502 3_1:+94563535 Msa0389620:three_prime_UTR
GTTCTGTTATACAATCCAAA+AGG 0.542969 3_1:-94563136 None:intergenic
GAATTAAATCGTCTGAGAGT+TGG 0.543056 3_1:+94563435 Msa0389620:three_prime_UTR
TGTTCGAGAGCTATGTTTGG+TGG 0.543784 3_1:+94561865 Msa0389620:CDS
CATTCACTGGTGTTTACCTG+GGG 0.545869 3_1:+94562933 Msa0389620:CDS
TGGTGTTCGAGAGCTATGTT+TGG 0.547200 3_1:+94561862 Msa0389620:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 3_1:+94561018 Msa0389620:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 3_1:+94561315 Msa0389620:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 3_1:-94560988 None:intergenic
TATGAAGATATTTAAAGTTG+AGG 0.563429 3_1:+94561365 Msa0389620:CDS
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 3_1:-94563530 Msa0389630:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 3_1:-94563377 Msa0389630:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 3_1:-94562809 None:intergenic
TTAAATCGTCTGAGAGTTGG+TGG 0.569032 3_1:+94563438 Msa0389620:three_prime_UTR
CCGGAGGATCGCATTGAGGA+GGG 0.569780 3_1:+94560876 Msa0389620:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 3_1:-94561897 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 3_1:-94561222 None:intergenic
TAAATAAAACACAAATGTTG+TGG 0.572067 3_1:-94563323 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 3_1:+94561823 Msa0389620:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 3_1:+94560908 Msa0389620:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 3_1:-94563376 Msa0389630:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 3_1:+94561226 Msa0389620:CDS
CTCATGGATGCAACCTCCCA+AGG 0.585468 3_1:+94561045 Msa0389620:CDS
CGTCACGACAGCATATAAGT+TGG 0.586816 3_1:+94562142 Msa0389620:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 3_1:+94560895 Msa0389620:CDS
TCAAGTCTTCGATTGATCGC+CGG 0.588728 3_1:+94560700 Msa0389620:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 3_1:-94563520 Msa0389630:CDS
ACTTTAAATATCTTCATAGG+TGG 0.594287 3_1:-94561360 None:intergenic
TGATCATGCAACAAATCATA+CGG 0.594915 3_1:+94561770 Msa0389620:CDS
AACTTACCACAAATGTGTTG+GGG 0.596950 3_1:-94562240 None:intergenic
GCAAATGTACATGTCAAAGG+TGG 0.597773 3_1:-94563289 None:intergenic
ACCGGTTGTTGTGTTGCCGG+AGG 0.598806 3_1:+94560860 Msa0389620:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 3_1:+94561833 Msa0389620:CDS
ATTGGAGACTCATTACAAAG+AGG 0.601036 3_1:+94561267 Msa0389620:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 3_1:+94560829 Msa0389620:CDS
CACTTCTTCATAAAGAGGAT+AGG 0.612582 3_1:-94560940 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 3_1:+94561813 Msa0389620:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 3_1:+94560825 Msa0389620:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 3_1:+94563051 Msa0389620:three_prime_UTR
TGTTGTAAATAATAATCAAG+TGG 0.615423 3_1:-94563350 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 3_1:+94560872 Msa0389620:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 3_1:+94561785 Msa0389620:CDS
AATGAATCATACCCAATACA+AGG 0.626400 3_1:+94562703 Msa0389620:CDS
AAAGTGTTGGCTACCTTGGG+AGG 0.628073 3_1:-94561058 None:intergenic
GTTGGTGGTAAATCTTGACC+TGG 0.628676 3_1:+94563453 Msa0389620:three_prime_UTR
CTTGGGAGGTTGCATCCATG+AGG 0.629461 3_1:-94561044 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.631598 3_1:-94563288 None:intergenic
GAGATACAAACTGTAAACAA+AGG 0.634145 3_1:+94563182 Msa0389620:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 3_1:+94561722 Msa0389620:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 3_1:+94561828 Msa0389620:CDS
GAGACAGCATTGATATGAGA+TGG 0.642148 3_1:-94560677 None:intergenic
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 3_1:-94560968 None:intergenic
GATACAAAGCGTGAAGATAG+CGG 0.644538 3_1:-94564017 Msa0389630:CDS
ATACAAGGTTCGTCATATTG+GGG 0.647384 3_1:+94562718 Msa0389620:CDS
CTTTCGCTCGCCATAAACTG+AGG 0.649074 3_1:-94562857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAAGTTCACAAT+CGG - chr3_1:94561121-94561140 None:intergenic 15.0%
!! TAATAACTCTAGTTATTATT+AGG - chr3_1:94562431-94562450 None:intergenic 15.0%
!!! AAATTCGATTTTTTATTTTC+TGG + chr3_1:94562590-94562609 Msa0389620:intron 15.0%
!!! AACCTAAACAATATAATTTT+CGG + chr3_1:94563257-94563276 Msa0389620:three_prime_UTR 15.0%
!!! CTTGAATTTTATTCAAAAAA+TGG - chr3_1:94563662-94563681 Msa0389630:intron 15.0%
!!! CATTTTTTGAATAAAATTCA+AGG + chr3_1:94563660-94563679 Msa0389620:intron 15.0%
!!! CTATTTTAGTTGTTTTTTTT+TGG + chr3_1:94563742-94563761 Msa0389620:intron 15.0%
!! AGTTAAGTTATTCTATATAT+TGG - chr3_1:94563882-94563901 Msa0389630:intron 15.0%
!! ATATAATTGGGAAAATTGAT+TGG - chr3_1:94560728-94560747 None:intergenic 20.0%
!! GAAGTGAATACAATATAATT+GGG - chr3_1:94560740-94560759 None:intergenic 20.0%
!! AGAAGTGAATACAATATAAT+TGG - chr3_1:94560741-94560760 None:intergenic 20.0%
!! AACAAAAGAATGATGTTTAT+TGG + chr3_1:94561249-94561268 Msa0389620:CDS 20.0%
!! TCAACTTTAAATATCTTCAT+AGG - chr3_1:94561366-94561385 None:intergenic 20.0%
!!! TATGAAGATATTTAAAGTTG+AGG + chr3_1:94561365-94561384 Msa0389620:CDS 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG - chr3_1:94561434-94561453 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG + chr3_1:94562064-94562083 Msa0389620:intron 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG + chr3_1:94562301-94562320 Msa0389620:intron 20.0%
!!! TATCAAAACTTTTCTTAACA+TGG + chr3_1:94563003-94563022 Msa0389620:exon 20.0%
!! TAAATAAAACACAAATGTTG+TGG - chr3_1:94563326-94563345 None:intergenic 20.0%
!! TGTTGTAAATAATAATCAAG+TGG - chr3_1:94563353-94563372 None:intergenic 20.0%
! ACTTTAAATATCTTCATAGG+TGG - chr3_1:94561363-94561382 None:intergenic 25.0%
! GACATAAATATTTGTGAGAT+TGG - chr3_1:94561549-94561568 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG + chr3_1:94561688-94561707 Msa0389620:intron 25.0%
!! AAAAATACATTTTGAGCAAG+TGG - chr3_1:94562209-94562228 None:intergenic 25.0%
! GAAGAGAGATGTTAATTATT+AGG - chr3_1:94562512-94562531 None:intergenic 25.0%
!!! AAGAATTTATTTTCTTCTCC+AGG + chr3_1:94562641-94562660 Msa0389620:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG - chr3_1:94562827-94562846 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG - chr3_1:94562981-94563000 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG - chr3_1:94563104-94563123 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG - chr3_1:94563225-94563244 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG - chr3_1:94563262-94563281 None:intergenic 25.0%
! CATTTAGTAGAAAAGACTAA+TGG + chr3_1:94563922-94563941 Msa0389620:intron 25.0%
! CTCTATTAAATTAAAGTTGG+AGG - chr3_1:94564060-94564079 Msa0389630:CDS 25.0%
! ACGCTCTATTAAATTAAAGT+TGG - chr3_1:94564063-94564082 Msa0389630:CDS 25.0%
TTCTAATCTTTGCAGTTACA+AGG + chr3_1:94560757-94560776 Msa0389620:CDS 30.0%
CAATGTATTTGAAGGGAAAT+GGG + chr3_1:94560902-94560921 Msa0389620:CDS 30.0%
CAATTTGTGTAGAAAGAATC+AGG - chr3_1:94561014-94561033 None:intergenic 30.0%
CTGATTCTTTCTACACAAAT+TGG + chr3_1:94561012-94561031 Msa0389620:CDS 30.0%
ATTCTTTCTACACAAATTGG+AGG + chr3_1:94561015-94561034 Msa0389620:CDS 30.0%
! GTTAAAATCTGGAAAAGTGT+TGG - chr3_1:94561074-94561093 None:intergenic 30.0%
AACAGATCATAGACTCAAAT+TGG - chr3_1:94561293-94561312 None:intergenic 30.0%
ATTTGAGTCTATGATCTGTT+TGG + chr3_1:94561293-94561312 Msa0389620:CDS 30.0%
! GAAATTGATTCAACCATGAA+TGG - chr3_1:94561750-94561769 None:intergenic 30.0%
TGATCATGCAACAAATCATA+CGG + chr3_1:94561770-94561789 Msa0389620:CDS 30.0%
CAAATCATACGGTACATAAA+CGG + chr3_1:94561781-94561800 Msa0389620:CDS 30.0%
AGTACTTGAATGAATGTTCA+TGG + chr3_1:94561959-94561978 Msa0389620:intron 30.0%
!! TGTGCTTTTTACACAACTAT+AGG - chr3_1:94561991-94562010 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG + chr3_1:94561994-94562013 Msa0389620:intron 30.0%
!! AACATGTTTTGTTCCAGATA+TGG + chr3_1:94562092-94562111 Msa0389620:intron 30.0%
TTATATTCTTGGACTTCATC+TGG - chr3_1:94562122-94562141 None:intergenic 30.0%
! ATAAGTTGGCGTTAAAAACA+TGG + chr3_1:94562156-94562175 Msa0389620:CDS 30.0%
! TAAGTTGGCGTTAAAAACAT+GGG + chr3_1:94562157-94562176 Msa0389620:CDS 30.0%
TAACTTACCACAAATGTGTT+GGG - chr3_1:94562244-94562263 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG - chr3_1:94562387-94562406 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG + chr3_1:94562703-94562722 Msa0389620:CDS 30.0%
AATATGACGAACCTTGTATT+GGG - chr3_1:94562717-94562736 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG + chr3_1:94562717-94562736 Msa0389620:CDS 30.0%
TAATTGGGTGATGTTCAATA+GGG - chr3_1:94562812-94562831 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG - chr3_1:94562813-94562832 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG - chr3_1:94562828-94562847 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG - chr3_1:94562915-94562934 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG - chr3_1:94562916-94562935 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG - chr3_1:94563132-94563151 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG - chr3_1:94563139-94563158 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG + chr3_1:94563182-94563201 Msa0389620:three_prime_UTR 30.0%
AGTATGAACAACTAGCAATA+TGG - chr3_1:94563500-94563519 Msa0389630:CDS 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG - chr3_1:94563573-94563592 Msa0389630:intron 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG - chr3_1:94563574-94563593 Msa0389630:intron 30.0%
CATTGATATGAGATGGTTGA+AGG - chr3_1:94560673-94560692 None:intergenic 35.0%
TTGGGAAAATTGATTGGATC+CGG - chr3_1:94560722-94560741 None:intergenic 35.0%
AGGGTTGCAATGTATTTGAA+GGG + chr3_1:94560895-94560914 Msa0389620:CDS 35.0%
GCAATGTATTTGAAGGGAAA+TGG + chr3_1:94560901-94560920 Msa0389620:CDS 35.0%
TATTTGAAGGGAAATGGGTA+TGG + chr3_1:94560907-94560926 Msa0389620:CDS 35.0%
ATTTGAAGGGAAATGGGTAT+GGG + chr3_1:94560908-94560927 Msa0389620:CDS 35.0%
CACTTCTTCATAAAGAGGAT+AGG - chr3_1:94560943-94560962 None:intergenic 35.0%
CAACTCACTTCTTCATAAAG+AGG - chr3_1:94560948-94560967 None:intergenic 35.0%
ATCAAGGCGAAGTTAAAATC+TGG - chr3_1:94561085-94561104 None:intergenic 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG - chr3_1:94561195-94561214 None:intergenic 35.0%
! CTTATGCTTTTCTTGACTTC+AGG + chr3_1:94561193-94561212 Msa0389620:intron 35.0%
AACATGTGCAACAACTTCAA+AGG - chr3_1:94561225-94561244 None:intergenic 35.0%
ATTGGAGACTCATTACAAAG+AGG + chr3_1:94561267-94561286 Msa0389620:CDS 35.0%
GTACAATCTGTAATTCCTGA+AGG + chr3_1:94561315-94561334 Msa0389620:CDS 35.0%
TCTTCATAGGTGGAATTCTT+TGG - chr3_1:94561353-94561372 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG + chr3_1:94561721-94561740 Msa0389620:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG + chr3_1:94561722-94561741 Msa0389620:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG + chr3_1:94561914-94561933 Msa0389620:intron 35.0%
CGTTAAAAACATGGGCAAAT+TGG + chr3_1:94562165-94562184 Msa0389620:CDS 35.0%
! ATACATTTTGAGCAAGTGGT+TGG - chr3_1:94562205-94562224 None:intergenic 35.0%
AACTTACCACAAATGTGTTG+GGG - chr3_1:94562243-94562262 None:intergenic 35.0%
GTAACTTACCACAAATGTGT+TGG - chr3_1:94562245-94562264 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG - chr3_1:94562347-94562366 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG - chr3_1:94562388-94562407 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG - chr3_1:94562718-94562737 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG + chr3_1:94562716-94562735 Msa0389620:CDS 35.0%
ATACAAGGTTCGTCATATTG+GGG + chr3_1:94562718-94562737 Msa0389620:CDS 35.0%
TAGCTCTCTGTTCTTTAGTT+AGG - chr3_1:94562891-94562910 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG - chr3_1:94562960-94562979 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG - chr3_1:94562961-94562980 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG + chr3_1:94563048-94563067 Msa0389620:three_prime_UTR 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG + chr3_1:94563233-94563252 Msa0389620:three_prime_UTR 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG - chr3_1:94563245-94563264 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG - chr3_1:94563291-94563310 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG - chr3_1:94563295-94563314 None:intergenic 35.0%
GAATTAAATCGTCTGAGAGT+TGG + chr3_1:94563435-94563454 Msa0389620:three_prime_UTR 35.0%
GAACAACTAGCAATATGGTT+TGG - chr3_1:94563495-94563514 Msa0389630:CDS 35.0%
CCCATGAAAAATGACAGTAA+TGG + chr3_1:94563570-94563589 Msa0389620:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG - chr3_1:94563952-94563971 Msa0389630:CDS 35.0%
! CCTTATACGATCTAAGCTTT+TGG + chr3_1:94563949-94563968 Msa0389620:intron 35.0%
CGGTATATTTGTGAATGATC+GGG - chr3_1:94564000-94564019 Msa0389630:CDS 35.0%
GCGGTATATTTGTGAATGAT+CGG - chr3_1:94564001-94564020 Msa0389630:CDS 35.0%
!! GAGACAGCATTGATATGAGA+TGG - chr3_1:94560680-94560699 None:intergenic 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG + chr3_1:94560810-94560829 Msa0389620:CDS 40.0%
GAGGGTTGCAATGTATTTGA+AGG + chr3_1:94560894-94560913 Msa0389620:CDS 40.0%
AGACCACTTGCATGAAGAAT+GGG + chr3_1:94560985-94561004 Msa0389620:CDS 40.0%
CTTTCTACACAAATTGGAGG+TGG + chr3_1:94561018-94561037 Msa0389620:CDS 40.0%
ACTTCGCCTTGATTACTCTT+AGG + chr3_1:94561092-94561111 Msa0389620:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG - chr3_1:94561101-94561120 None:intergenic 40.0%
TGAAGTTGTTGCACATGTTG+AGG + chr3_1:94561226-94561245 Msa0389620:CDS 40.0%
CATAGGTGGAATTCTTTGGA+GGG - chr3_1:94561349-94561368 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG - chr3_1:94561350-94561369 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG + chr3_1:94561692-94561711 Msa0389620:intron 40.0%
TCCTGCCAAAACAAAGCTAT+AGG - chr3_1:94561696-94561715 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG + chr3_1:94561785-94561804 Msa0389620:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG + chr3_1:94561813-94561832 Msa0389620:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG + chr3_1:94561823-94561842 Msa0389620:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG - chr3_1:94561899-94561918 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG - chr3_1:94561900-94561919 None:intergenic 40.0%
GTATATCTATAGACCTTGGC+TGG + chr3_1:94561918-94561937 Msa0389620:intron 40.0%
!! CAAGTACTGAACTATGCTCA+CGG - chr3_1:94561947-94561966 None:intergenic 40.0%
TTCATCTGGTGATCCATATC+TGG - chr3_1:94562108-94562127 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG - chr3_1:94562133-94562152 None:intergenic 40.0%
AAAGTGAAGCCCACATGATT+TGG + chr3_1:94562375-94562394 Msa0389620:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG + chr3_1:94562647-94562666 Msa0389620:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG + chr3_1:94562648-94562667 Msa0389620:intron 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG + chr3_1:94562920-94562939 Msa0389620:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG + chr3_1:94563051-94563070 Msa0389620:three_prime_UTR 40.0%
! TTCCAACACCTTTTGCCTTT+TGG + chr3_1:94563121-94563140 Msa0389620:three_prime_UTR 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG - chr3_1:94563126-94563145 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG - chr3_1:94563292-94563311 None:intergenic 40.0%
TTAAATCGTCTGAGAGTTGG+TGG + chr3_1:94563438-94563457 Msa0389620:three_prime_UTR 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG - chr3_1:94563523-94563542 Msa0389630:CDS 40.0%
ATGCATTCTCTTCGAAGAAG+AGG - chr3_1:94563533-94563552 Msa0389630:CDS 40.0%
TCAAGGAAACGATGAAGATG+TGG + chr3_1:94563677-94563696 Msa0389620:intron 40.0%
GATACAAAGCGTGAAGATAG+CGG - chr3_1:94564020-94564039 Msa0389630:CDS 40.0%
TCAAGTCTTCGATTGATCGC+CGG + chr3_1:94560700-94560719 Msa0389620:CDS 45.0%
GCTTGCTCTTCAAGCTATCT+AGG - chr3_1:94560788-94560807 None:intergenic 45.0%
TGCCGTAGAGCTGAAAAACA+TGG - chr3_1:94560815-94560834 None:intergenic 45.0%
TGGTGGAAGGAATCGATTAC+CGG + chr3_1:94560842-94560861 Msa0389620:CDS 45.0%
! ATTACCGGTTGTTGTGTTGC+CGG + chr3_1:94560857-94560876 Msa0389620:CDS 45.0%
AGAAGTGAGTTGCCCTTACT+TGG + chr3_1:94560956-94560975 Msa0389620:CDS 45.0%
TGGTCTGCTTGACCAAGTAA+GGG - chr3_1:94560971-94560990 None:intergenic 45.0%
CAGACCACTTGCATGAAGAA+TGG + chr3_1:94560984-94561003 Msa0389620:CDS 45.0%
TCTCCCATTCTTCATGCAAG+TGG - chr3_1:94560991-94561010 None:intergenic 45.0%
!! GGAAAAGTGTTGGCTACCTT+GGG - chr3_1:94561064-94561083 None:intergenic 45.0%
!! TGGAAAAGTGTTGGCTACCT+TGG - chr3_1:94561065-94561084 None:intergenic 45.0%
TGGAGGGATTTCTTTCCTTC+AGG - chr3_1:94561333-94561352 None:intergenic 45.0%
ATACTACTGGGCTCCATTCA+TGG + chr3_1:94561734-94561753 Msa0389620:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG + chr3_1:94561828-94561847 Msa0389620:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG + chr3_1:94561842-94561861 Msa0389620:CDS 45.0%
TGGTGTTCGAGAGCTATGTT+TGG + chr3_1:94561862-94561881 Msa0389620:CDS 45.0%
TGTTCGAGAGCTATGTTTGG+TGG + chr3_1:94561865-94561884 Msa0389620:CDS 45.0%
CGTCACGACAGCATATAAGT+TGG + chr3_1:94562142-94562161 Msa0389620:CDS 45.0%
GTATGTCCCCAACACATTTG+TGG + chr3_1:94562234-94562253 Msa0389620:CDS 45.0%
! AAGCAGTTTTCGTCACTTCC+TGG - chr3_1:94562682-94562701 None:intergenic 45.0%
GATGCTCACACCTCAGTTTA+TGG + chr3_1:94562847-94562866 Msa0389620:CDS 45.0%
TCAGTTTATGGCGAGCGAAA+GGG + chr3_1:94562859-94562878 Msa0389620:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG + chr3_1:94562931-94562950 Msa0389620:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG + chr3_1:94562932-94562951 Msa0389620:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG + chr3_1:94562933-94562952 Msa0389620:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG - chr3_1:94563379-94563398 Msa0389630:CDS 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG - chr3_1:94563380-94563399 Msa0389630:CDS 45.0%
CGTTGAGTTCACGTATGTTC+TGG + chr3_1:94563413-94563432 Msa0389620:three_prime_UTR 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG + chr3_1:94563453-94563472 Msa0389620:three_prime_UTR 45.0%
TCTTCGAAGAGAATGCATCC+TGG + chr3_1:94563535-94563554 Msa0389620:three_prime_UTR 45.0%
GTGGTCTGCTTGACCAAGTA+AGG - chr3_1:94560972-94560991 None:intergenic 50.0%
!! AAAGTGTTGGCTACCTTGGG+AGG - chr3_1:94561061-94561080 None:intergenic 50.0%
TGGCAAACATTGGCAAGGAG+TGG + chr3_1:94561833-94561852 Msa0389620:CDS 50.0%
CTTTCGCTCGCCATAAACTG+AGG - chr3_1:94562860-94562879 None:intergenic 50.0%
CTCAGTTTATGGCGAGCGAA+AGG + chr3_1:94562858-94562877 Msa0389620:CDS 50.0%
CATGGGACAGAAAAGACTCC+AGG - chr3_1:94563556-94563575 Msa0389630:intron 50.0%
CAGCTCTACGGCATGTCATC+TGG + chr3_1:94560822-94560841 Msa0389620:CDS 55.0%
CTCTACGGCATGTCATCTGG+TGG + chr3_1:94560825-94560844 Msa0389620:CDS 55.0%
ACGGCATGTCATCTGGTGGA+AGG + chr3_1:94560829-94560848 Msa0389620:CDS 55.0%
TCCTCCGGCAACACAACAAC+CGG - chr3_1:94560864-94560883 None:intergenic 55.0%
AATTGGAGGTGGCAGCCTCA+TGG + chr3_1:94561029-94561048 Msa0389620:CDS 55.0%
CTTGGGAGGTTGCATCCATG+AGG - chr3_1:94561047-94561066 None:intergenic 55.0%
CTCATGGATGCAACCTCCCA+AGG + chr3_1:94561045-94561064 Msa0389620:CDS 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG + chr3_1:94562653-94562672 Msa0389620:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG + chr3_1:94562724-94562743 Msa0389620:CDS 55.0%
TACCTGGGGTCCCAGATACA+TGG + chr3_1:94562947-94562966 Msa0389620:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG - chr3_1:94562952-94562971 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG - chr3_1:94563474-94563493 Msa0389630:CDS 55.0%
ACCGGTTGTTGTGTTGCCGG+AGG + chr3_1:94560860-94560879 Msa0389620:CDS 60.0%
GTTGCCGGAGGATCGCATTG+AGG + chr3_1:94560872-94560891 Msa0389620:CDS 60.0%
CCCTCCTCAATGCGATCCTC+CGG - chr3_1:94560879-94560898 None:intergenic 60.0%
CCGGAGGATCGCATTGAGGA+GGG + chr3_1:94560876-94560895 Msa0389620:CDS 60.0%
ATGCTCACGGAGACCAGCCA+AGG - chr3_1:94561934-94561953 None:intergenic 60.0%
TGGCTTCCATTCCCAGCTCC+TGG - chr3_1:94562662-94562681 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG + chr3_1:94562661-94562680 Msa0389620:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG + chr3_1:94560875-94560894 Msa0389620:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94560640 94564087 94560640 ID=Msa0389620;Name=Msa0389620
chr3_1 mRNA 94560640 94564087 94560640 ID=Msa0389620-mRNA-1;Parent=Msa0389620;Name=Msa0389620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|1|1|1|0.8|0.66|6|682|417
chr3_1 exon 94560640 94561066 94560640 ID=Msa0389620-mRNA-1:exon:26859;Parent=Msa0389620-mRNA-1
chr3_1 exon 94561215 94561386 94561215 ID=Msa0389620-mRNA-1:exon:26860;Parent=Msa0389620-mRNA-1
chr3_1 exon 94561714 94561913 94561714 ID=Msa0389620-mRNA-1:exon:26861;Parent=Msa0389620-mRNA-1
chr3_1 exon 94562109 94562255 94562109 ID=Msa0389620-mRNA-1:exon:26862;Parent=Msa0389620-mRNA-1
chr3_1 exon 94562663 94563574 94562663 ID=Msa0389620-mRNA-1:exon:26863;Parent=Msa0389620-mRNA-1
chr3_1 exon 94563960 94564087 94563960 ID=Msa0389620-mRNA-1:exon:26864;Parent=Msa0389620-mRNA-1
chr3_1 five_prime_UTR 94560640 94560689 94560640 ID=Msa0389620-mRNA-1:five_prime_utr;Parent=Msa0389620-mRNA-1
chr3_1 CDS 94560690 94561066 94560690 ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1 CDS 94561215 94561386 94561215 ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1 CDS 94561714 94561913 94561714 ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1 CDS 94562109 94562255 94562109 ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1 CDS 94562663 94563020 94562663 ID=Msa0389620-mRNA-1:cds;Parent=Msa0389620-mRNA-1
chr3_1 three_prime_UTR 94563021 94563574 94563021 ID=Msa0389620-mRNA-1:three_prime_utr;Parent=Msa0389620-mRNA-1
chr3_1 three_prime_UTR 94563960 94564087 94563960 ID=Msa0389620-mRNA-1:three_prime_utr;Parent=Msa0389620-mRNA-1
Gene Sequence

>Msa0389620

ATGCTGTCTCTCAAGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCGGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGTGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAAAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCTGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGCTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCGTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTGCTCAAAATGTATTTTTCATGAGTATGTCCCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGACGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACCTCAGTTTATGGCGAGCGAAAGGGCAAGCTCCTAACTAAAGAACAGAGAGCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa0389620

MLSLKSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEVSCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFKVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLAQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*