Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946610 | sp|D4Q9Z4|SGT2_SOYBN | 48.241 | 199 | 82 | 3 | 5 | 183 | 2 | 199 | 5.65e-56 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0883800 | Msa0946610 | 0.822340 | 2.496249e-53 | -8.615850e-47 |
| Msa0946610 | Msa0946620 | 0.987982 | 2.885458e-172 | -8.615850e-47 |
| Msa0946610 | Msa1090210 | 0.949851 | 5.497627e-108 | -8.615850e-47 |
| Msa0946610 | Msa1090220 | 0.923929 | 1.387704e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946610 | MtrunA17_Chr6g0463891 | 72.038 | 211 | 39 | 2 | 1 | 191 | 1 | 211 | 1.40e-101 | 304 |
| Msa0946610 | MtrunA17_Chr6g0463891 | 96.610 | 59 | 2 | 0 | 189 | 247 | 437 | 495 | 1.81e-29 | 115 |
| Msa0946610 | MtrunA17_Chr7g0231651 | 60.199 | 201 | 60 | 2 | 3 | 183 | 5 | 205 | 1.98e-82 | 245 |
| Msa0946610 | MtrunA17_Chr5g0416821 | 60.697 | 201 | 59 | 2 | 3 | 183 | 5 | 205 | 1.50e-80 | 249 |
| Msa0946610 | MtrunA17_Chr5g0416821 | 79.310 | 58 | 12 | 0 | 189 | 246 | 426 | 483 | 6.09e-21 | 91.3 |
| Msa0946610 | MtrunA17_Chr5g0416741 | 60.697 | 201 | 58 | 3 | 3 | 183 | 4 | 203 | 2.89e-77 | 241 |
| Msa0946610 | MtrunA17_Chr5g0416741 | 76.364 | 55 | 13 | 0 | 189 | 243 | 436 | 490 | 1.99e-18 | 84.0 |
| Msa0946610 | MtrunA17_Chr5g0401851 | 49.223 | 193 | 77 | 3 | 11 | 183 | 9 | 200 | 5.70e-56 | 186 |
| Msa0946610 | MtrunA17_Chr7g0243801 | 46.354 | 192 | 82 | 3 | 7 | 178 | 2 | 192 | 1.77e-47 | 164 |
| Msa0946610 | MtrunA17_Chr7g0243771 | 46.842 | 190 | 80 | 3 | 9 | 178 | 3 | 191 | 4.06e-47 | 162 |
| Msa0946610 | MtrunA17_Chr7g0243771 | 56.364 | 55 | 24 | 0 | 189 | 243 | 428 | 482 | 7.96e-11 | 61.6 |
| Msa0946610 | MtrunA17_Chr7g0243631 | 45.550 | 191 | 83 | 3 | 9 | 179 | 10 | 199 | 2.50e-45 | 158 |
| Msa0946610 | MtrunA17_Chr8g0355221 | 44.670 | 197 | 87 | 4 | 7 | 183 | 10 | 204 | 4.29e-45 | 157 |
| Msa0946610 | MtrunA17_Chr8g0355221 | 60.000 | 55 | 22 | 0 | 189 | 243 | 439 | 493 | 2.56e-11 | 63.2 |
| Msa0946610 | MtrunA17_Chr7g0243951 | 45.745 | 188 | 81 | 3 | 9 | 176 | 8 | 194 | 5.90e-45 | 157 |
| Msa0946610 | MtrunA17_Chr7g0243921 | 43.458 | 214 | 91 | 7 | 1 | 190 | 28 | 235 | 1.61e-44 | 149 |
| Msa0946610 | MtrunA17_Chr7g0243931 | 48.677 | 189 | 74 | 5 | 9 | 176 | 14 | 200 | 5.08e-44 | 155 |
| Msa0946610 | MtrunA17_Chr7g0243681 | 46.316 | 190 | 81 | 3 | 9 | 178 | 8 | 196 | 1.16e-43 | 154 |
| Msa0946610 | MtrunA17_Chr7g0243861 | 45.213 | 188 | 82 | 3 | 9 | 176 | 11 | 197 | 2.25e-43 | 153 |
| Msa0946610 | MtrunA17_Chr1g0165701 | 44.162 | 197 | 88 | 4 | 7 | 183 | 10 | 204 | 5.90e-43 | 152 |
| Msa0946610 | MtrunA17_Chr1g0165701 | 59.322 | 59 | 24 | 0 | 189 | 247 | 436 | 494 | 2.58e-12 | 65.9 |
| Msa0946610 | MtrunA17_Chr7g0235051 | 44.505 | 182 | 80 | 4 | 9 | 185 | 8 | 173 | 1.67e-41 | 147 |
| Msa0946610 | MtrunA17_Chr7g0243761 | 45.876 | 194 | 82 | 4 | 9 | 180 | 8 | 200 | 1.57e-40 | 145 |
| Msa0946610 | MtrunA17_Chr7g0243871 | 41.206 | 199 | 96 | 3 | 5 | 183 | 2 | 199 | 1.62e-40 | 145 |
| Msa0946610 | MtrunA17_Chr4g0060511 | 43.814 | 194 | 83 | 5 | 9 | 178 | 8 | 199 | 2.81e-40 | 144 |
| Msa0946610 | MtrunA17_Chr7g0243781 | 41.206 | 199 | 96 | 3 | 5 | 183 | 2 | 199 | 7.55e-38 | 138 |
| Msa0946610 | MtrunA17_Chr7g0243851 | 40.110 | 182 | 76 | 3 | 9 | 185 | 8 | 161 | 5.01e-34 | 127 |
| Msa0946610 | MtrunA17_Chr7g0243851 | 52.727 | 55 | 26 | 0 | 189 | 243 | 395 | 449 | 8.03e-11 | 61.6 |
| Msa0946610 | MtrunA17_Chr7g0243811 | 43.333 | 180 | 76 | 4 | 24 | 183 | 1 | 174 | 2.51e-31 | 119 |
| Msa0946610 | MtrunA17_Chr4g0066261 | 34.711 | 242 | 124 | 10 | 11 | 225 | 10 | 244 | 5.46e-30 | 116 |
| Msa0946610 | MtrunA17_Chr4g0044501 | 35.450 | 189 | 101 | 3 | 7 | 175 | 5 | 192 | 7.10e-29 | 113 |
| Msa0946610 | MtrunA17_Chr8g0366391 | 32.857 | 210 | 117 | 4 | 5 | 191 | 2 | 210 | 1.88e-28 | 112 |
| Msa0946610 | MtrunA17_Chr4g0066151 | 32.780 | 241 | 132 | 8 | 5 | 225 | 11 | 241 | 2.71e-28 | 112 |
| Msa0946610 | MtrunA17_Chr5g0419761 | 32.743 | 226 | 123 | 7 | 7 | 203 | 4 | 229 | 1.19e-26 | 107 |
| Msa0946610 | MtrunA17_Chr4g0066131 | 32.420 | 219 | 124 | 6 | 1 | 202 | 2 | 213 | 1.88e-26 | 106 |
| Msa0946610 | MtrunA17_Chr4g0044521 | 33.992 | 253 | 124 | 12 | 2 | 228 | 1 | 236 | 1.30e-25 | 104 |
| Msa0946610 | MtrunA17_Chr4g0014061 | 35.714 | 182 | 94 | 5 | 7 | 168 | 4 | 182 | 1.45e-25 | 104 |
| Msa0946610 | MtrunA17_Chr4g0066171 | 38.028 | 142 | 69 | 3 | 11 | 137 | 20 | 157 | 2.50e-24 | 100 |
| Msa0946610 | MtrunA17_Chr8g0374971 | 31.100 | 209 | 127 | 3 | 11 | 202 | 11 | 219 | 8.16e-24 | 99.4 |
| Msa0946610 | MtrunA17_Chr4g0066201 | 39.437 | 142 | 68 | 3 | 11 | 137 | 17 | 155 | 9.83e-24 | 99.4 |
| Msa0946610 | MtrunA17_Chr7g0265141 | 29.741 | 232 | 134 | 4 | 6 | 208 | 3 | 234 | 9.93e-24 | 99.0 |
| Msa0946610 | MtrunA17_Chr4g0066221 | 30.244 | 205 | 125 | 4 | 11 | 197 | 10 | 214 | 5.61e-23 | 97.1 |
| Msa0946610 | MtrunA17_Chr7g0275681 | 30.579 | 242 | 139 | 7 | 14 | 228 | 14 | 253 | 6.75e-23 | 96.7 |
| Msa0946610 | MtrunA17_Chr7g0243711 | 59.494 | 79 | 26 | 2 | 9 | 82 | 8 | 85 | 1.13e-22 | 94.7 |
| Msa0946610 | MtrunA17_Chr7g0265111 | 30.481 | 187 | 105 | 4 | 9 | 174 | 36 | 218 | 1.36e-22 | 96.3 |
| Msa0946610 | MtrunA17_Chr4g0066281 | 29.362 | 235 | 141 | 4 | 7 | 225 | 7 | 232 | 5.81e-22 | 94.0 |
| Msa0946610 | MtrunA17_Chr1g0179901 | 30.570 | 193 | 106 | 5 | 6 | 174 | 10 | 198 | 5.89e-22 | 94.4 |
| Msa0946610 | MtrunA17_Chr4g0044511 | 28.934 | 197 | 122 | 4 | 7 | 187 | 35 | 229 | 1.22e-21 | 93.2 |
| Msa0946610 | MtrunA17_Chr8g0374931 | 35.915 | 142 | 72 | 3 | 11 | 134 | 10 | 150 | 1.55e-21 | 92.8 |
| Msa0946610 | MtrunA17_Chr2g0294921 | 29.577 | 213 | 128 | 5 | 11 | 202 | 159 | 370 | 3.36e-21 | 92.4 |
| Msa0946610 | MtrunA17_Chr7g0265041 | 30.870 | 230 | 127 | 8 | 5 | 203 | 4 | 232 | 3.36e-21 | 92.0 |
| Msa0946610 | MtrunA17_Chr5g0419771 | 29.921 | 254 | 138 | 9 | 9 | 228 | 33 | 280 | 5.67e-21 | 91.3 |
| Msa0946610 | MtrunA17_Chr7g0231631 | 77.966 | 59 | 13 | 0 | 189 | 247 | 212 | 270 | 7.59e-21 | 88.6 |
| Msa0946610 | MtrunA17_Chr2g0294931 | 34.507 | 142 | 74 | 3 | 11 | 134 | 10 | 150 | 1.72e-20 | 90.1 |
| Msa0946610 | MtrunA17_Chr7g0218311 | 35.762 | 151 | 77 | 4 | 1 | 133 | 6 | 154 | 4.11e-20 | 89.0 |
| Msa0946610 | MtrunA17_Chr8g0352711 | 86.364 | 44 | 6 | 0 | 204 | 247 | 1 | 44 | 5.18e-20 | 80.5 |
| Msa0946610 | MtrunA17_Chr8g0350881 | 36.170 | 141 | 73 | 3 | 11 | 134 | 11 | 151 | 6.78e-20 | 88.2 |
| Msa0946610 | MtrunA17_Chr8g0374941 | 37.267 | 161 | 75 | 6 | 11 | 146 | 948 | 1107 | 8.70e-20 | 88.2 |
| Msa0946610 | MtrunA17_Chr8g0374941 | 37.267 | 161 | 75 | 6 | 11 | 146 | 10 | 169 | 9.39e-20 | 88.2 |
| Msa0946610 | MtrunA17_Chr8g0374941 | 29.032 | 248 | 154 | 6 | 11 | 240 | 475 | 718 | 1.97e-17 | 81.6 |
| Msa0946610 | MtrunA17_Chr5g0410941 | 35.714 | 140 | 71 | 4 | 11 | 134 | 22 | 158 | 1.67e-19 | 87.0 |
| Msa0946610 | MtrunA17_Chr5g0428081 | 32.374 | 139 | 78 | 2 | 11 | 134 | 10 | 147 | 1.40e-18 | 84.3 |
| Msa0946610 | MtrunA17_Chr8g0374901 | 34.752 | 141 | 75 | 3 | 11 | 134 | 11 | 151 | 5.46e-17 | 79.7 |
| Msa0946610 | MtrunA17_Chr4g0044481 | 30.688 | 189 | 84 | 4 | 6 | 174 | 21 | 182 | 9.14e-17 | 79.0 |
| Msa0946610 | MtrunA17_Chr4g0011051 | 32.035 | 231 | 110 | 12 | 11 | 202 | 8 | 230 | 9.52e-17 | 79.0 |
| Msa0946610 | MtrunA17_Chr6g0463851 | 31.472 | 197 | 100 | 6 | 11 | 183 | 10 | 195 | 1.45e-16 | 78.6 |
| Msa0946610 | MtrunA17_Chr7g0265051 | 28.400 | 250 | 143 | 10 | 11 | 228 | 8 | 253 | 1.52e-16 | 78.6 |
| Msa0946610 | MtrunA17_Chr7g0265101 | 33.514 | 185 | 94 | 7 | 14 | 172 | 11 | 192 | 2.21e-16 | 78.2 |
| Msa0946610 | MtrunA17_Chr7g0265151 | 29.018 | 224 | 132 | 7 | 5 | 202 | 2 | 224 | 3.22e-16 | 77.4 |
| Msa0946610 | MtrunA17_Chr4g0066141 | 34.483 | 145 | 73 | 5 | 40 | 168 | 8 | 146 | 3.77e-15 | 73.9 |
| Msa0946610 | MtrunA17_Chr6g0463861 | 26.087 | 230 | 151 | 5 | 11 | 225 | 10 | 235 | 4.45e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946610 | AT2G15490.2 | 29.924 | 264 | 148 | 7 | 13 | 240 | 8 | 270 | 5.84e-28 | 107 |
| Msa0946610 | AT3G53150.1 | 31.746 | 252 | 142 | 7 | 6 | 228 | 16 | 266 | 2.06e-27 | 110 |
| Msa0946610 | AT4G34131.1 | 32.124 | 193 | 102 | 4 | 11 | 175 | 9 | 200 | 8.62e-24 | 99.8 |
| Msa0946610 | AT2G36750.1 | 29.787 | 235 | 135 | 6 | 11 | 216 | 9 | 242 | 3.61e-23 | 97.8 |
| Msa0946610 | AT4G34135.2 | 31.818 | 220 | 112 | 5 | 11 | 202 | 10 | 219 | 1.24e-22 | 95.1 |
| Msa0946610 | AT4G34135.1 | 32.500 | 200 | 106 | 4 | 11 | 182 | 10 | 208 | 3.78e-22 | 95.1 |
| Msa0946610 | AT2G36780.1 | 28.814 | 236 | 139 | 5 | 10 | 216 | 12 | 247 | 1.02e-21 | 94.0 |
| Msa0946610 | AT2G15490.1 | 30.097 | 206 | 115 | 5 | 13 | 191 | 8 | 211 | 5.03e-21 | 91.7 |
| Msa0946610 | AT2G15490.3 | 30.097 | 206 | 115 | 5 | 13 | 191 | 8 | 211 | 5.07e-21 | 91.7 |
| Msa0946610 | AT2G36770.1 | 28.085 | 235 | 140 | 5 | 11 | 216 | 13 | 247 | 7.52e-21 | 91.3 |
| Msa0946610 | AT2G15480.2 | 29.167 | 192 | 109 | 4 | 8 | 172 | 6 | 197 | 1.23e-18 | 85.1 |
| Msa0946610 | AT2G15480.1 | 29.167 | 192 | 109 | 4 | 8 | 172 | 6 | 197 | 1.39e-18 | 84.7 |
| Msa0946610 | AT2G36800.1 | 28.507 | 221 | 130 | 6 | 1 | 197 | 1 | 217 | 1.07e-17 | 82.4 |
| Msa0946610 | AT2G36790.1 | 29.381 | 194 | 111 | 5 | 7 | 174 | 4 | 197 | 1.13e-17 | 82.0 |
| Msa0946610 | AT2G36760.1 | 30.108 | 186 | 106 | 5 | 11 | 173 | 13 | 197 | 6.02e-17 | 80.1 |
| Msa0946610 | AT4G34138.1 | 31.875 | 160 | 80 | 4 | 7 | 137 | 6 | 165 | 2.16e-16 | 78.6 |
| Msa0946610 | AT3G53160.1 | 27.179 | 195 | 116 | 5 | 1 | 173 | 1 | 191 | 5.03e-15 | 74.3 |
Find 62 sgRNAs with CRISPR-Local
Find 428 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAACCTTCAGGTTAT+TGG | 0.180899 | 6_3:-28426773 | None:intergenic |
| AACCGGAAGGCCAAGTTCTT+TGG | 0.291160 | 6_3:-28426977 | None:intergenic |
| AAATTGAGAATTACTTGTTT+GGG | 0.292417 | 6_3:+28427079 | Msa0946610:CDS |
| CAAATTGAGAATTACTTGTT+TGG | 0.304470 | 6_3:+28427078 | Msa0946610:CDS |
| TTGATTGAAATCACGATCTA+TGG | 0.310365 | 6_3:-28426917 | None:intergenic |
| ATTTCCGATCGTTGGGTTGC+CGG | 0.332700 | 6_3:+28427278 | Msa0946610:CDS |
| GTTGCTTGTGGTGGCAATTA+TGG | 0.333546 | 6_3:-28426875 | None:intergenic |
| AACAAGTAATTCTCAATTTG+AGG | 0.364646 | 6_3:-28427075 | None:intergenic |
| TCTCCCGTTGTGCGGAGCTC+TGG | 0.383719 | 6_3:+28427208 | Msa0946610:CDS |
| GAGGATATTGCAAAGGCTAT+TGG | 0.392485 | 6_3:+28431755 | Msa0946610:intron |
| AGTCTTGCCATGTCAATCAT+TGG | 0.396893 | 6_3:-28426826 | None:intergenic |
| CGTTGGGTTGCCGGATAAGT+TGG | 0.399970 | 6_3:+28427287 | Msa0946610:CDS |
| TATTGCAAAGGCTATTGGTT+TGG | 0.420024 | 6_3:+28431760 | Msa0946610:intron |
| TATGATAAATTTCCGATCGT+TGG | 0.422383 | 6_3:+28427270 | Msa0946610:CDS |
| AAACCAGAGCTCCGCACAAC+GGG | 0.425051 | 6_3:-28427211 | None:intergenic |
| CTCAAACATCAAAGGCACTA+TGG | 0.425882 | 6_3:+28431917 | Msa0946610:CDS |
| AGCCAAAGAACTTGGCCTTC+CGG | 0.443204 | 6_3:+28426975 | Msa0946610:CDS |
| ATGATAAATTTCCGATCGTT+GGG | 0.443915 | 6_3:+28427271 | Msa0946610:CDS |
| GATCGGAAATTTATCATAAT+CGG | 0.444384 | 6_3:-28427265 | None:intergenic |
| CTAGTCATCTCCAACTTATC+CGG | 0.445123 | 6_3:-28427297 | None:intergenic |
| GTCTTGCCATGTCAATCATT+GGG | 0.453709 | 6_3:-28426825 | None:intergenic |
| AGGGAAGGAAAATAACCTTC+AGG | 0.459626 | 6_3:-28426780 | None:intergenic |
| GAGTTTCCAGCCAAAGAACT+TGG | 0.460160 | 6_3:+28426967 | Msa0946610:CDS |
| TCCACGGTTTCCATTCCAAC+CGG | 0.464705 | 6_3:-28426994 | None:intergenic |
| ATTGGTTTGGTGATGACAAA+TGG | 0.465565 | 6_3:+28431773 | Msa0946610:CDS |
| GGTTATTGGCTTCAGCTTCG+TGG | 0.465576 | 6_3:-28426759 | None:intergenic |
| CATGTGACTTGTTGATAAGA+AGG | 0.466349 | 6_3:-28426800 | None:intergenic |
| GCTAAAGCTTTGAGTGATGA+TGG | 0.468067 | 6_3:+28431824 | Msa0946610:CDS |
| TGCCATGTCAACAGGAGTAT+TGG | 0.469792 | 6_3:-28427019 | None:intergenic |
| CTAGATTACAGTTACCAGAT+TGG | 0.471509 | 6_3:+28427316 | Msa0946610:CDS |
| ACTTGGCCTTCCGGTTGGAA+TGG | 0.499483 | 6_3:+28426984 | Msa0946610:CDS |
| CATGGCAGGCAAAATCTACC+AGG | 0.499860 | 6_3:+28427035 | Msa0946610:CDS |
| GGAAGGCCAAGTTCTTTGGC+TGG | 0.505355 | 6_3:-28426973 | None:intergenic |
| GTTATTGGCTTCAGCTTCGT+GGG | 0.524130 | 6_3:-28426758 | None:intergenic |
| AAAGAACTTGGCCTTCCGGT+TGG | 0.533653 | 6_3:+28426979 | Msa0946610:CDS |
| GGAAAGAAAGCTATACTTGT+TGG | 0.533864 | 6_3:+28431845 | Msa0946610:CDS |
| GACAAATGGAAAAGAAGTTG+AGG | 0.535146 | 6_3:+28431787 | Msa0946610:CDS |
| AAATTTGATACAAATAATTG+AGG | 0.545066 | 6_3:+28431883 | Msa0946610:CDS |
| AATACTCCTGTTGACATGGC+AGG | 0.556376 | 6_3:+28427021 | Msa0946610:CDS |
| AAGAAAGCTATACTTGTTGG+TGG | 0.563374 | 6_3:+28431848 | Msa0946610:CDS |
| AACAGGAGTATTGGCATCCA+CGG | 0.569431 | 6_3:-28427010 | None:intergenic |
| AATTGAGAATTACTTGTTTG+GGG | 0.570222 | 6_3:+28427080 | Msa0946610:CDS |
| GTTGTAGCATTGTGAACCCC+TGG | 0.577956 | 6_3:-28427053 | None:intergenic |
| ATGTGACTTGTTGATAAGAA+GGG | 0.590692 | 6_3:-28426799 | None:intergenic |
| CGGTTTCCATTCCAACCGGA+AGG | 0.594491 | 6_3:-28426990 | None:intergenic |
| CAACGGGAGAAAATACTTGA+CGG | 0.610733 | 6_3:-28427195 | None:intergenic |
| AATATTTGCGTTGCTTGTGG+TGG | 0.611099 | 6_3:-28426884 | None:intergenic |
| GACTTGTTGATAAGAAGGGA+AGG | 0.612405 | 6_3:-28426795 | None:intergenic |
| TGCCAATACTCCTGTTGACA+TGG | 0.613415 | 6_3:+28427017 | Msa0946610:CDS |
| TTAAGTCACTCAAACATCAA+AGG | 0.613763 | 6_3:+28431909 | Msa0946610:CDS |
| CATGATCCCAATGATTGACA+TGG | 0.613945 | 6_3:+28426819 | Msa0946610:CDS |
| ATCATAATCGGACTCCACCT+CGG | 0.622629 | 6_3:-28427253 | None:intergenic |
| TTATCCGGCAACCCAACGAT+CGG | 0.624908 | 6_3:-28427282 | None:intergenic |
| AGCTGAAGCCAATAACCTGA+AGG | 0.631583 | 6_3:+28426765 | Msa0946610:CDS |
| GCAAGACTATTTGCTATGCA+TGG | 0.643610 | 6_3:+28426841 | Msa0946610:CDS |
| TCCGGTTGGAATGGAAACCG+TGG | 0.646953 | 6_3:+28426993 | Msa0946610:CDS |
| ATGGCAGGCAAAATCTACCA+GGG | 0.667440 | 6_3:+28427036 | Msa0946610:CDS |
| ACTATTTGCTATGCATGGTG+TGG | 0.674048 | 6_3:+28426846 | Msa0946610:CDS |
| CAAACCAGAGCTCCGCACAA+CGG | 0.678563 | 6_3:-28427212 | None:intergenic |
| ACAAAATTCAAGTCATACCG+AGG | 0.687981 | 6_3:+28427236 | Msa0946610:CDS |
| AAATTCAAGTCATACCGAGG+TGG | 0.706696 | 6_3:+28427239 | Msa0946610:CDS |
| TGGCAGGCAAAATCTACCAG+GGG | 0.729335 | 6_3:+28427037 | Msa0946610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGAAATGAATTAA+GGG | - | chr6_3:28427387-28427406 | None:intergenic | 10.0% |
| !! | AAATTTATTGAAATGAATTA+AGG | - | chr6_3:28427388-28427407 | None:intergenic | 10.0% |
| !! | AAAAAGTTAACTAAAAAATA+GGG | + | chr6_3:28427853-28427872 | Msa0946610:intron | 10.0% |
| !!! | TTTAGAGTTAAATATATTTT+TGG | - | chr6_3:28427971-28427990 | None:intergenic | 10.0% |
| !!! | ATTTATTTTTATAAATGGAA+AGG | - | chr6_3:28428173-28428192 | None:intergenic | 10.0% |
| !! | TTTCCATTTATAAAAATAAA+TGG | + | chr6_3:28428172-28428191 | Msa0946610:intron | 10.0% |
| !!! | GTTATGATTTTTTTTTTTTA+GGG | - | chr6_3:28428656-28428675 | None:intergenic | 10.0% |
| !!! | TGTTATGATTTTTTTTTTTT+AGG | - | chr6_3:28428657-28428676 | None:intergenic | 10.0% |
| !!! | ACAATAATTTTTTTCATATA+GGG | + | chr6_3:28429041-28429060 | Msa0946610:intron | 10.0% |
| !! | ACAATAAATAAGTATTTATA+AGG | + | chr6_3:28429073-28429092 | Msa0946610:intron | 10.0% |
| !!! | TTCATTAGTTTTTTTTTATA+AGG | - | chr6_3:28430088-28430107 | None:intergenic | 10.0% |
| !!! | TATTATTTAAGGTTATTATT+TGG | - | chr6_3:28430518-28430537 | None:intergenic | 10.0% |
| !! | TTAATTTACTCTATTATTTA+AGG | - | chr6_3:28430529-28430548 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTCAATTTTGT+TGG | - | chr6_3:28430942-28430961 | None:intergenic | 10.0% |
| !!! | TTTTTATTCACTAAACTATT+TGG | + | chr6_3:28427452-28427471 | Msa0946610:intron | 15.0% |
| !! | AAAAGTTGACATATTTATAA+GGG | - | chr6_3:28427522-28427541 | None:intergenic | 15.0% |
| !!! | TGTTAAAAAATTCTTTTCTT+AGG | + | chr6_3:28427779-28427798 | Msa0946610:intron | 15.0% |
| !! | CAAAAAGTTAACTAAAAAAT+AGG | + | chr6_3:28427852-28427871 | Msa0946610:intron | 15.0% |
| !!! | TAGTGTTTGAAAATTTTATA+GGG | + | chr6_3:28427884-28427903 | Msa0946610:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | + | chr6_3:28427944-28427963 | Msa0946610:intron | 15.0% |
| !!! | TCTCCATTTATTTTTATAAA+TGG | - | chr6_3:28428178-28428197 | None:intergenic | 15.0% |
| !! | ATCTTGAAAATAAATAATGA+TGG | - | chr6_3:28428266-28428285 | None:intergenic | 15.0% |
| !! | ATAACAACATAAATTAGATT+TGG | + | chr6_3:28428671-28428690 | Msa0946610:intron | 15.0% |
| !!! | TAAAATTTTTGATACATAGA+AGG | - | chr6_3:28428952-28428971 | None:intergenic | 15.0% |
| !!! | CACAATAATTTTTTTCATAT+AGG | + | chr6_3:28429040-28429059 | Msa0946610:intron | 15.0% |
| !!! | TTAGTTTTTTTTTATAAGGT+CGG | - | chr6_3:28430084-28430103 | None:intergenic | 15.0% |
| !!! | TATTCATGTCATTTATTTTT+GGG | - | chr6_3:28430190-28430209 | None:intergenic | 15.0% |
| !!! | ATATTCATGTCATTTATTTT+TGG | - | chr6_3:28430191-28430210 | None:intergenic | 15.0% |
| !! | AAATAATAGAGTAAATTAAG+TGG | + | chr6_3:28430530-28430549 | Msa0946610:intron | 15.0% |
| !! | TAATAAATATTTACCATTTG+TGG | + | chr6_3:28430683-28430702 | Msa0946610:intron | 15.0% |
| !! | AAAACAAAAAAAAAGTTAGT+CGG | - | chr6_3:28430823-28430842 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTTTCGTTTTTT+AGG | + | chr6_3:28430832-28430851 | Msa0946610:intron | 15.0% |
| !!! | TTAAACATAATTTGTTATGA+AGG | + | chr6_3:28431064-28431083 | Msa0946610:intron | 15.0% |
| !! | AAATTTGATACAAATAATTG+AGG | + | chr6_3:28431883-28431902 | Msa0946610:CDS | 15.0% |
| !! | AAATTGAGAATTACTTGTTT+GGG | + | chr6_3:28427079-28427098 | Msa0946610:CDS | 20.0% |
| !! | GAAAAGTTGACATATTTATA+AGG | - | chr6_3:28427523-28427542 | None:intergenic | 20.0% |
| !!! | AGTTGAAGAAATTTTTTAGA+GGG | - | chr6_3:28427554-28427573 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGAAATTTTTTAG+AGG | - | chr6_3:28427555-28427574 | None:intergenic | 20.0% |
| !!! | AAATTTTCAAACACTACTTT+TGG | - | chr6_3:28427880-28427899 | None:intergenic | 20.0% |
| !!! | GTAGTGTTTGAAAATTTTAT+AGG | + | chr6_3:28427883-28427902 | Msa0946610:intron | 20.0% |
| !!! | CGAAAAGTTGATATATTTAT+AGG | + | chr6_3:28427943-28427962 | Msa0946610:intron | 20.0% |
| !!! | TCATCTTTTTTACGAATAAA+TGG | + | chr6_3:28428072-28428091 | Msa0946610:intron | 20.0% |
| !! | ATTGTCATTAATAAAGAGAT+AGG | + | chr6_3:28428197-28428216 | Msa0946610:intron | 20.0% |
| !! | TGAAAATAAATAATGATGGT+GGG | - | chr6_3:28428262-28428281 | None:intergenic | 20.0% |
| !! | TTGAAAATAAATAATGATGG+TGG | - | chr6_3:28428263-28428282 | None:intergenic | 20.0% |
| !!! | AATTTTAGGGATTTAGTTTT+CGG | - | chr6_3:28428730-28428749 | None:intergenic | 20.0% |
| !! | TGGAAAGAATACATAATTAT+GGG | - | chr6_3:28428760-28428779 | None:intergenic | 20.0% |
| !!! | TATTTTAACTAACGAATTGT+AGG | + | chr6_3:28429170-28429189 | Msa0946610:intron | 20.0% |
| !! | AAGGTTATTATTTGGATATA+TGG | - | chr6_3:28430510-28430529 | None:intergenic | 20.0% |
| !!! | TCAAAATAGAAATTTTGTCT+AGG | + | chr6_3:28430614-28430633 | Msa0946610:intron | 20.0% |
| !! | TAATAAGGGTTATTTGATAT+GGG | + | chr6_3:28431490-28431509 | Msa0946610:intron | 20.0% |
| ! | AACAAGTAATTCTCAATTTG+AGG | - | chr6_3:28427078-28427097 | None:intergenic | 25.0% |
| ! | CAAATTGAGAATTACTTGTT+TGG | + | chr6_3:28427078-28427097 | Msa0946610:CDS | 25.0% |
| ! | AATTGAGAATTACTTGTTTG+GGG | + | chr6_3:28427080-28427099 | Msa0946610:CDS | 25.0% |
| ! | GATCGGAAATTTATCATAAT+CGG | - | chr6_3:28427268-28427287 | None:intergenic | 25.0% |
| ! | ATCTTTGCAAAAAACATATC+TGG | - | chr6_3:28427351-28427370 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTGCAAAGATG+TGG | + | chr6_3:28427352-28427371 | Msa0946610:CDS | 25.0% |
| ! | GCGTTTATAAGTTTATTCAA+AGG | + | chr6_3:28427425-28427444 | Msa0946610:intron | 25.0% |
| !! | AAATTTATCCTTGTTTGGTT+TGG | - | chr6_3:28427478-28427497 | None:intergenic | 25.0% |
| !! | ACCAAACAAGGATAAATTTT+AGG | + | chr6_3:28427479-28427498 | Msa0946610:intron | 25.0% |
| !! | CCAAACAAGGATAAATTTTA+GGG | + | chr6_3:28427480-28427499 | Msa0946610:intron | 25.0% |
| ! | AAGTGAAGATGAAAAACTTT+CGG | - | chr6_3:28427586-28427605 | None:intergenic | 25.0% |
| !! | AAGTTTTTCATCTTCACTTT+TGG | + | chr6_3:28427587-28427606 | Msa0946610:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+AGG | + | chr6_3:28427913-28427932 | Msa0946610:intron | 25.0% |
| !! | TATTCATAAGACTTTGTTTG+AGG | + | chr6_3:28428484-28428503 | Msa0946610:intron | 25.0% |
| !! | ATTCATAAGACTTTGTTTGA+GGG | + | chr6_3:28428485-28428504 | Msa0946610:intron | 25.0% |
| ! | TTTGGAAGAATGATATTAGA+GGG | + | chr6_3:28428533-28428552 | Msa0946610:intron | 25.0% |
| ! | AAAGAATACATAATTATGGG+CGG | - | chr6_3:28428757-28428776 | None:intergenic | 25.0% |
| ! | GTGGAAAGAATACATAATTA+TGG | - | chr6_3:28428761-28428780 | None:intergenic | 25.0% |
| !!! | TTAATGCCTCAATTTTTTGT+AGG | - | chr6_3:28428845-28428864 | None:intergenic | 25.0% |
| ! | GATTACTCATTACATATTCA+GGG | - | chr6_3:28428921-28428940 | None:intergenic | 25.0% |
| ! | TGATTACTCATTACATATTC+AGG | - | chr6_3:28428922-28428941 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTTGTTTTGATAT+CGG | + | chr6_3:28429798-28429817 | Msa0946610:intron | 25.0% |
| !!! | GAAATTTTGATACATTGTGA+CGG | + | chr6_3:28430130-28430149 | Msa0946610:intron | 25.0% |
| ! | GACATGAATATGTTTAATGT+CGG | + | chr6_3:28430200-28430219 | Msa0946610:intron | 25.0% |
| ! | AAGAATGGTTTGACATTAAA+CGG | - | chr6_3:28430391-28430410 | None:intergenic | 25.0% |
| ! | ACTAATCAAGTATCTAAGAA+TGG | - | chr6_3:28430406-28430425 | None:intergenic | 25.0% |
| !!! | TCGACAGTGAAATATTTTTA+GGG | - | chr6_3:28430749-28430768 | None:intergenic | 25.0% |
| !!! | TCGTTTTTTAGGAAAAACTT+TGG | + | chr6_3:28430843-28430862 | Msa0946610:intron | 25.0% |
| !! | TGTTAATTCTACGATTTTTG+AGG | - | chr6_3:28430919-28430938 | None:intergenic | 25.0% |
| !!! | AACATAATTTGTTATGAAGG+CGG | + | chr6_3:28431067-28431086 | Msa0946610:intron | 25.0% |
| ! | AATACAAGTAGTAAAAGCTA+TGG | + | chr6_3:28431095-28431114 | Msa0946610:intron | 25.0% |
| ! | TATCTAGTTGTGATTTCATT+TGG | + | chr6_3:28431396-28431415 | Msa0946610:intron | 25.0% |
| ! | ATCTAGTTGTGATTTCATTT+GGG | + | chr6_3:28431397-28431416 | Msa0946610:intron | 25.0% |
| ! | CGTAAAAGTAATGATAAAGA+AGG | + | chr6_3:28431425-28431444 | Msa0946610:intron | 25.0% |
| !! | TAAAGAAGGTGAAGATTTTA+TGG | + | chr6_3:28431439-28431458 | Msa0946610:intron | 25.0% |
| ! | AAGAGTGAAAGAAAGTAATA+AGG | + | chr6_3:28431475-28431494 | Msa0946610:intron | 25.0% |
| ! | AGAGTGAAAGAAAGTAATAA+GGG | + | chr6_3:28431476-28431495 | Msa0946610:intron | 25.0% |
| ! | GTAATAAGGGTTATTTGATA+TGG | + | chr6_3:28431489-28431508 | Msa0946610:intron | 25.0% |
| ! | AATAAGGGTTATTTGATATG+GGG | + | chr6_3:28431491-28431510 | Msa0946610:intron | 25.0% |
| ! | AAAAATTGCTCAGCAAATAA+AGG | - | chr6_3:28431632-28431651 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTCATGAGAAAT+TGG | + | chr6_3:28431643-28431662 | Msa0946610:intron | 25.0% |
| !!! | ATTTTTTCATGAGAAATTGG+TGG | + | chr6_3:28431646-28431665 | Msa0946610:intron | 25.0% |
| !! | TGGTTGAAGTGTTAAAAATT+GGG | + | chr6_3:28431666-28431685 | Msa0946610:intron | 25.0% |
| ! | GAAAATAACCTTCAGGTTAT+TGG | - | chr6_3:28426776-28426795 | None:intergenic | 30.0% |
| !! | ATGTGACTTGTTGATAAGAA+GGG | - | chr6_3:28426802-28426821 | None:intergenic | 30.0% |
| AAAAATATTTGCGTTGCTTG+TGG | - | chr6_3:28426890-28426909 | None:intergenic | 30.0% | |
| TTGATTGAAATCACGATCTA+TGG | - | chr6_3:28426920-28426939 | None:intergenic | 30.0% | |
| ATAGATCGTGATTTCAATCA+AGG | + | chr6_3:28426919-28426938 | Msa0946610:intron | 30.0% | |
| !! | GACGGATTAAAAACAATTCT+TGG | - | chr6_3:28427180-28427199 | None:intergenic | 30.0% |
| TATGATAAATTTCCGATCGT+TGG | + | chr6_3:28427270-28427289 | Msa0946610:CDS | 30.0% | |
| ATGATAAATTTCCGATCGTT+GGG | + | chr6_3:28427271-28427290 | Msa0946610:CDS | 30.0% | |
| CCCTAAAATTTATCCTTGTT+TGG | - | chr6_3:28427483-28427502 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr6_3:28427899-28427918 | Msa0946610:intron | 30.0% | |
| !!! | CGCTTCGTTTTTGTTTTTAA+GGG | - | chr6_3:28428108-28428127 | None:intergenic | 30.0% |
| CCTTAAAAACAAAAACGAAG+CGG | + | chr6_3:28428106-28428125 | Msa0946610:intron | 30.0% | |
| CTTAAAAACAAAAACGAAGC+GGG | + | chr6_3:28428107-28428126 | Msa0946610:intron | 30.0% | |
| AGAGATAGGAGACAAAAAAT+AGG | + | chr6_3:28428211-28428230 | Msa0946610:intron | 30.0% | |
| ! | TGGTGGATCTTATTAGTAAA+TGG | + | chr6_3:28428234-28428253 | Msa0946610:intron | 30.0% |
| GGTGGATCTTATTAGTAAAT+GGG | + | chr6_3:28428235-28428254 | Msa0946610:intron | 30.0% | |
| GTCTCTTCAAATTGAAGAAA+TGG | + | chr6_3:28428299-28428318 | Msa0946610:intron | 30.0% | |
| GGAGAAGAGTTTAAATAGAT+AGG | + | chr6_3:28428320-28428339 | Msa0946610:intron | 30.0% | |
| TTATGAATACATGTCACATG+CGG | - | chr6_3:28428473-28428492 | None:intergenic | 30.0% | |
| GTTTGGAAGAATGATATTAG+AGG | + | chr6_3:28428532-28428551 | Msa0946610:intron | 30.0% | |
| !!! | ATTTAGTTTTCGGTTTGAAG+GGG | - | chr6_3:28428720-28428739 | None:intergenic | 30.0% |
| !!! | GATTTAGTTTTCGGTTTGAA+GGG | - | chr6_3:28428721-28428740 | None:intergenic | 30.0% |
| AAGAATACATAATTATGGGC+GGG | - | chr6_3:28428756-28428775 | None:intergenic | 30.0% | |
| !!! | GTGCAAAATTTGTTGGTTTT+GGG | + | chr6_3:28429660-28429679 | Msa0946610:intron | 30.0% |
| TGTTTACTCATACTTAGACT+CGG | + | chr6_3:28429871-28429890 | Msa0946610:intron | 30.0% | |
| AGATTAGACAGATTAGAGTT+GGG | + | chr6_3:28430016-28430035 | Msa0946610:intron | 30.0% | |
| !! | TTCATTGGTTCATAATAGCA+GGG | - | chr6_3:28430460-28430479 | None:intergenic | 30.0% |
| !! | ATTCATTGGTTCATAATAGC+AGG | - | chr6_3:28430461-28430480 | None:intergenic | 30.0% |
| ! | AAATGCTAACTTGTGCATTT+AGG | + | chr6_3:28430575-28430594 | Msa0946610:intron | 30.0% |
| !!! | CGACAGTGAAATATTTTTAG+GGG | - | chr6_3:28430748-28430767 | None:intergenic | 30.0% |
| ! | CTCGACAGTGAAATATTTTT+AGG | - | chr6_3:28430750-28430769 | None:intergenic | 30.0% |
| ! | AAAAGTTAGTCGGTTCTATT+TGG | - | chr6_3:28430813-28430832 | None:intergenic | 30.0% |
| TTTAGGAAAAACTTTGGATC+AGG | + | chr6_3:28430849-28430868 | Msa0946610:intron | 30.0% | |
| ACATACACACACGTATATAA+GGG | - | chr6_3:28430987-28431006 | None:intergenic | 30.0% | |
| ! | GCAGTATTCAATAGCTTTTA+CGG | + | chr6_3:28431119-28431138 | Msa0946610:intron | 30.0% |
| ! | ATTCAATAGCTTTTACGGTT+TGG | + | chr6_3:28431124-28431143 | Msa0946610:intron | 30.0% |
| ! | AAACCAAGATGTTTCTGATA+AGG | + | chr6_3:28431223-28431242 | Msa0946610:intron | 30.0% |
| !! | GAGATAGTGGTTTGTTTAAA+TGG | + | chr6_3:28431273-28431292 | Msa0946610:intron | 30.0% |
| ! | TCTGTTCTCTATGTAAGTTT+TGG | + | chr6_3:28431317-28431336 | Msa0946610:intron | 30.0% |
| ! | TTTCAATGAGTTGAGATGAT+GGG | - | chr6_3:28431358-28431377 | None:intergenic | 30.0% |
| ! | ATTTCAATGAGTTGAGATGA+TGG | - | chr6_3:28431359-28431378 | None:intergenic | 30.0% |
| ATACTTGAGAACAAAGCTAT+TGG | + | chr6_3:28431533-28431552 | Msa0946610:intron | 30.0% | |
| ! | GTGGTTGAAGTGTTAAAAAT+TGG | + | chr6_3:28431665-28431684 | Msa0946610:intron | 30.0% |
| ! | GGTTGAAGTGTTAAAAATTG+GGG | + | chr6_3:28431667-28431686 | Msa0946610:intron | 30.0% |
| GGGTTAGAAAATGGAAAAAT+TGG | + | chr6_3:28431699-28431718 | Msa0946610:intron | 30.0% | |
| ATACTAACGACATTGTGAAA+AGG | + | chr6_3:28431732-28431751 | Msa0946610:intron | 30.0% | |
| TACTAACGACATTGTGAAAA+GGG | + | chr6_3:28431733-28431752 | Msa0946610:intron | 30.0% | |
| TTAAGTCACTCAAACATCAA+AGG | + | chr6_3:28431909-28431928 | Msa0946610:CDS | 30.0% | |
| !! | CATGTGACTTGTTGATAAGA+AGG | - | chr6_3:28426803-28426822 | None:intergenic | 35.0% |
| !! | TTAGTGACTTGCTTTATGCA+TGG | + | chr6_3:28427124-28427143 | Msa0946610:intron | 35.0% |
| ! | TAACTTTTCTGCAACATCGA+CGG | - | chr6_3:28427151-28427170 | None:intergenic | 35.0% |
| ACAAAATTCAAGTCATACCG+AGG | + | chr6_3:28427236-28427255 | Msa0946610:CDS | 35.0% | |
| CTAGATTACAGTTACCAGAT+TGG | + | chr6_3:28427316-28427335 | Msa0946610:CDS | 35.0% | |
| ! | TCTGGATTTTTGATCCAATC+TGG | - | chr6_3:28427333-28427352 | None:intergenic | 35.0% |
| !!! | GTTTTTTGCAAAGATGTGGA+AGG | + | chr6_3:28427356-28427375 | Msa0946610:CDS | 35.0% |
| !!! | TTTTGTTTTTAAGGGAGCTC+TGG | - | chr6_3:28428100-28428119 | None:intergenic | 35.0% |
| !!! | CCGCTTCGTTTTTGTTTTTA+AGG | - | chr6_3:28428109-28428128 | None:intergenic | 35.0% |
| AAGGATCTCAACTCGTATAT+CGG | - | chr6_3:28428154-28428173 | None:intergenic | 35.0% | |
| GATAGGAGACAAAAAATAGG+TGG | + | chr6_3:28428214-28428233 | Msa0946610:intron | 35.0% | |
| ATAGATAGGATCTTAACTCC+CGG | + | chr6_3:28428334-28428353 | Msa0946610:intron | 35.0% | |
| AGAATCTCATACATGTATGC+CGG | - | chr6_3:28428356-28428375 | None:intergenic | 35.0% | |
| ! | TAAGACTTTGTTTGAGGGTT+CGG | + | chr6_3:28428490-28428509 | Msa0946610:intron | 35.0% |
| !!! | GGATTTAGTTTTCGGTTTGA+AGG | - | chr6_3:28428722-28428741 | None:intergenic | 35.0% |
| TAAAAGGGCAATAGTCACTT+TGG | + | chr6_3:28428894-28428913 | Msa0946610:intron | 35.0% | |
| AAGGAGAAGGAGGTAAAAAA+CGG | - | chr6_3:28429275-28429294 | None:intergenic | 35.0% | |
| TCATGATTCTTGAAACTCCA+CGG | + | chr6_3:28429471-28429490 | Msa0946610:intron | 35.0% | |
| TCCTATTGCATATTTGATGC+TGG | + | chr6_3:28429501-28429520 | Msa0946610:intron | 35.0% | |
| ACCAGCATCAAATATGCAAT+AGG | - | chr6_3:28429505-28429524 | None:intergenic | 35.0% | |
| CGTTCTATTGAGAAACATGT+CGG | + | chr6_3:28429606-28429625 | Msa0946610:intron | 35.0% | |
| !!! | GGTGCAAAATTTGTTGGTTT+TGG | + | chr6_3:28429659-28429678 | Msa0946610:intron | 35.0% |
| TGTTTGACCAGAAATGGTTA+TGG | + | chr6_3:28429896-28429915 | Msa0946610:intron | 35.0% | |
| CAGATTAGACAGATTAGAGT+TGG | + | chr6_3:28430015-28430034 | Msa0946610:intron | 35.0% | |
| TAAATTGAACCAACGTCCTA+CGG | - | chr6_3:28430431-28430450 | None:intergenic | 35.0% | |
| GAATGGTGGTAGATATTCAT+TGG | - | chr6_3:28430475-28430494 | None:intergenic | 35.0% | |
| TATGGAATCCAGATCATGAA+TGG | - | chr6_3:28430492-28430511 | None:intergenic | 35.0% | |
| CATGTTAAGGATTCCACAAA+TGG | - | chr6_3:28430699-28430718 | None:intergenic | 35.0% | |
| CACATACACACACGTATATA+AGG | - | chr6_3:28430988-28431007 | None:intergenic | 35.0% | |
| !! | AATAGCTTTTACGGTTTGGA+GGG | + | chr6_3:28431128-28431147 | Msa0946610:intron | 35.0% |
| GAGCATTACAAGAATGCATT+TGG | + | chr6_3:28431161-28431180 | Msa0946610:intron | 35.0% | |
| ! | ATGCATTTGGAACAAAGTGT+TGG | + | chr6_3:28431174-28431193 | Msa0946610:intron | 35.0% |
| CTTAGGACCAGTTTCATTAT+GGG | + | chr6_3:28431199-28431218 | Msa0946610:intron | 35.0% | |
| ACAAATGTAGAAGGAGATAG+TGG | + | chr6_3:28431260-28431279 | Msa0946610:intron | 35.0% | |
| GAGAACAGAATTCTCTTTCT+TGG | - | chr6_3:28431306-28431325 | None:intergenic | 35.0% | |
| ! | AGAAGGTGAAGATTTTATGG+AGG | + | chr6_3:28431442-28431461 | Msa0946610:intron | 35.0% |
| TCTCAAGTATCAGCAATTGT+GGG | - | chr6_3:28431523-28431542 | None:intergenic | 35.0% | |
| TTCTCAAGTATCAGCAATTG+TGG | - | chr6_3:28431524-28431543 | None:intergenic | 35.0% | |
| ! | ATAGTTGAAAGTGTGAATGC+TGG | + | chr6_3:28431587-28431606 | Msa0946610:intron | 35.0% |
| ! | TAGTTGAAAGTGTGAATGCT+GGG | + | chr6_3:28431588-28431607 | Msa0946610:intron | 35.0% |
| !! | TTAAAAATTGGGGTGTCACT+TGG | + | chr6_3:28431677-28431696 | Msa0946610:intron | 35.0% |
| !! | TAAAAATTGGGGTGTCACTT+GGG | + | chr6_3:28431678-28431697 | Msa0946610:intron | 35.0% |
| ! | TATTGCAAAGGCTATTGGTT+TGG | + | chr6_3:28431760-28431779 | Msa0946610:intron | 35.0% |
| !! | ATTGGTTTGGTGATGACAAA+TGG | + | chr6_3:28431773-28431792 | Msa0946610:CDS | 35.0% |
| GACAAATGGAAAAGAAGTTG+AGG | + | chr6_3:28431787-28431806 | Msa0946610:CDS | 35.0% | |
| GGAAAGAAAGCTATACTTGT+TGG | + | chr6_3:28431845-28431864 | Msa0946610:CDS | 35.0% | |
| ! | AAGAAAGCTATACTTGTTGG+TGG | + | chr6_3:28431848-28431867 | Msa0946610:CDS | 35.0% |
| AGGGAAGGAAAATAACCTTC+AGG | - | chr6_3:28426783-28426802 | None:intergenic | 40.0% | |
| !! | GACTTGTTGATAAGAAGGGA+AGG | - | chr6_3:28426798-28426817 | None:intergenic | 40.0% |
| CATGATCCCAATGATTGACA+TGG | + | chr6_3:28426819-28426838 | Msa0946610:CDS | 40.0% | |
| GTCTTGCCATGTCAATCATT+GGG | - | chr6_3:28426828-28426847 | None:intergenic | 40.0% | |
| AGTCTTGCCATGTCAATCAT+TGG | - | chr6_3:28426829-28426848 | None:intergenic | 40.0% | |
| !! | GCAAGACTATTTGCTATGCA+TGG | + | chr6_3:28426841-28426860 | Msa0946610:CDS | 40.0% |
| !! | ACTATTTGCTATGCATGGTG+TGG | + | chr6_3:28426846-28426865 | Msa0946610:CDS | 40.0% |
| AATATTTGCGTTGCTTGTGG+TGG | - | chr6_3:28426887-28426906 | None:intergenic | 40.0% | |
| GTCGATGTTGCAGAAAAGTT+AGG | + | chr6_3:28427150-28427169 | Msa0946610:intron | 40.0% | |
| CAACGGGAGAAAATACTTGA+CGG | - | chr6_3:28427198-28427217 | None:intergenic | 40.0% | |
| ! | AAGTATTTTCTCCCGTTGTG+CGG | + | chr6_3:28427200-28427219 | Msa0946610:CDS | 40.0% |
| AAATTCAAGTCATACCGAGG+TGG | + | chr6_3:28427239-28427258 | Msa0946610:CDS | 40.0% | |
| CTAGTCATCTCCAACTTATC+CGG | - | chr6_3:28427300-28427319 | None:intergenic | 40.0% | |
| CTATTTGGCCAAACCAAACA+AGG | + | chr6_3:28427467-28427486 | Msa0946610:intron | 40.0% | |
| AAAAACAAAAACGAAGCGGG+TGG | + | chr6_3:28428110-28428129 | Msa0946610:intron | 40.0% | |
| AGGATCTCAACTCGTATATC+GGG | - | chr6_3:28428153-28428172 | None:intergenic | 40.0% | |
| AGGAGACAAAAAATAGGTGG+TGG | + | chr6_3:28428217-28428236 | Msa0946610:intron | 40.0% | |
| GAATCTCATACATGTATGCC+GGG | - | chr6_3:28428355-28428374 | None:intergenic | 40.0% | |
| GCATGTGACATGTATTCATG+AGG | + | chr6_3:28428415-28428434 | Msa0946610:intron | 40.0% | |
| TGTGACATGTATTCATGAGG+CGG | + | chr6_3:28428418-28428437 | Msa0946610:intron | 40.0% | |
| ! | TATGGGCGGGTAGAATTTTA+GGG | - | chr6_3:28428743-28428762 | None:intergenic | 40.0% |
| ! | TTATGGGCGGGTAGAATTTT+AGG | - | chr6_3:28428744-28428763 | None:intergenic | 40.0% |
| GAACAAAAGGAAGGAAGAAG+TGG | - | chr6_3:28428780-28428799 | None:intergenic | 40.0% | |
| AGGGATTGTGAACAAAAGGA+AGG | - | chr6_3:28428789-28428808 | None:intergenic | 40.0% | |
| TGAGAGGGATTGTGAACAAA+AGG | - | chr6_3:28428793-28428812 | None:intergenic | 40.0% | |
| ACCGAGCCTACAAAAAATTG+AGG | + | chr6_3:28428836-28428855 | Msa0946610:intron | 40.0% | |
| !!! | GCCTCAATTTTTTGTAGGCT+CGG | - | chr6_3:28428840-28428859 | None:intergenic | 40.0% |
| AGAAGGAGGTAAAAAACGGA+CGG | - | chr6_3:28429271-28429290 | None:intergenic | 40.0% | |
| TTGCTCTAACATCCCCAAAA+GGG | - | chr6_3:28429420-28429439 | None:intergenic | 40.0% | |
| AAGAATCATGAAGCATACCG+TGG | - | chr6_3:28429462-28429481 | None:intergenic | 40.0% | |
| ! | CTGGTTGGTGCAAAATTTGT+TGG | + | chr6_3:28429653-28429672 | Msa0946610:intron | 40.0% |
| ATGCTATGCTTCTGAATCGT+TGG | + | chr6_3:28429828-28429847 | Msa0946610:intron | 40.0% | |
| TCGGATTGTTTGACCAGAAA+TGG | + | chr6_3:28429890-28429909 | Msa0946610:intron | 40.0% | |
| CAAGTCTCCATAACCATTTC+TGG | - | chr6_3:28429906-28429925 | None:intergenic | 40.0% | |
| AGTTGGGTACCAACTTAGTT+GGG | + | chr6_3:28430032-28430051 | Msa0946610:intron | 40.0% | |
| TTTAATGTCGGACTCCACTT+TGG | + | chr6_3:28430212-28430231 | Msa0946610:intron | 40.0% | |
| !! | GATACTTGATTAGTCTCCGT+AGG | + | chr6_3:28430412-28430431 | Msa0946610:intron | 40.0% |
| ATCTACCACCATTCATGATC+TGG | + | chr6_3:28430481-28430500 | Msa0946610:intron | 40.0% | |
| !! | CATGTTAACTTGTACCCTCA+GGG | - | chr6_3:28430724-28430743 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTACCCTC+AGG | - | chr6_3:28430725-28430744 | None:intergenic | 40.0% |
| GGTTCTATTTGGACCATTGT+CGG | - | chr6_3:28430802-28430821 | None:intergenic | 40.0% | |
| !! | CAATAGCTTTTACGGTTTGG+AGG | + | chr6_3:28431127-28431146 | Msa0946610:intron | 40.0% |
| !! | ATAGCTTTTACGGTTTGGAG+GGG | + | chr6_3:28431129-28431148 | Msa0946610:intron | 40.0% |
| GCTTAGGACCAGTTTCATTA+TGG | + | chr6_3:28431198-28431217 | Msa0946610:intron | 40.0% | |
| ! | TGGTTTGCCCATAATGAAAC+TGG | - | chr6_3:28431209-28431228 | None:intergenic | 40.0% |
| CTGCCTTATCAGAAACATCT+TGG | - | chr6_3:28431229-28431248 | None:intergenic | 40.0% | |
| GTTTCTGATAAGGCAGAAAG+AGG | + | chr6_3:28431233-28431252 | Msa0946610:intron | 40.0% | |
| AGAGGTGACACAAATGTAGA+AGG | + | chr6_3:28431251-28431270 | Msa0946610:intron | 40.0% | |
| AGGGTTATTTGATATGGGGT+TGG | + | chr6_3:28431495-28431514 | Msa0946610:intron | 40.0% | |
| GGGTTATTTGATATGGGGTT+GGG | + | chr6_3:28431496-28431515 | Msa0946610:intron | 40.0% | |
| CTCAAGTATCAGCAATTGTG+GGG | - | chr6_3:28431522-28431541 | None:intergenic | 40.0% | |
| CTTGAGAACAAAGCTATTGG+AGG | + | chr6_3:28431536-28431555 | Msa0946610:intron | 40.0% | |
| ! | GAGGAATTGTGACTAGTTGT+GGG | + | chr6_3:28431555-28431574 | Msa0946610:intron | 40.0% |
| AATAAAGGCCAAGTCACCAT+AGG | - | chr6_3:28431617-28431636 | None:intergenic | 40.0% | |
| !! | AAAAATTGGGGTGTCACTTG+GGG | + | chr6_3:28431679-28431698 | Msa0946610:intron | 40.0% |
| ! | TGTCACTTGGGGTTAGAAAA+TGG | + | chr6_3:28431690-28431709 | Msa0946610:intron | 40.0% |
| TAACGACATTGTGAAAAGGG+AGG | + | chr6_3:28431736-28431755 | Msa0946610:intron | 40.0% | |
| GAAAAGGGAGGATATTGCAA+AGG | + | chr6_3:28431748-28431767 | Msa0946610:intron | 40.0% | |
| GAGGATATTGCAAAGGCTAT+TGG | + | chr6_3:28431755-28431774 | Msa0946610:intron | 40.0% | |
| !! | GCTAAAGCTTTGAGTGATGA+TGG | + | chr6_3:28431824-28431843 | Msa0946610:CDS | 40.0% |
| !! | CTCAAACATCAAAGGCACTA+TGG | + | chr6_3:28431917-28431936 | Msa0946610:CDS | 40.0% |
| !! | GTTATTGGCTTCAGCTTCGT+GGG | - | chr6_3:28426761-28426780 | None:intergenic | 45.0% |
| AGCTGAAGCCAATAACCTGA+AGG | + | chr6_3:28426765-28426784 | Msa0946610:CDS | 45.0% | |
| GTTGCTTGTGGTGGCAATTA+TGG | - | chr6_3:28426878-28426897 | None:intergenic | 45.0% | |
| GAGTTTCCAGCCAAAGAACT+TGG | + | chr6_3:28426967-28426986 | Msa0946610:CDS | 45.0% | |
| !! | AACAGGAGTATTGGCATCCA+CGG | - | chr6_3:28427013-28427032 | None:intergenic | 45.0% |
| TGCCAATACTCCTGTTGACA+TGG | + | chr6_3:28427017-28427036 | Msa0946610:CDS | 45.0% | |
| ! | TGCCATGTCAACAGGAGTAT+TGG | - | chr6_3:28427022-28427041 | None:intergenic | 45.0% |
| AATACTCCTGTTGACATGGC+AGG | + | chr6_3:28427021-28427040 | Msa0946610:CDS | 45.0% | |
| ! | ATTTTGCCTGCCATGTCAAC+AGG | - | chr6_3:28427030-28427049 | None:intergenic | 45.0% |
| ATGGCAGGCAAAATCTACCA+GGG | + | chr6_3:28427036-28427055 | Msa0946610:CDS | 45.0% | |
| ATCATAATCGGACTCCACCT+CGG | - | chr6_3:28427256-28427275 | None:intergenic | 45.0% | |
| !! | GTTTTCGGTTTGAAGGGGTT+TGG | - | chr6_3:28428715-28428734 | None:intergenic | 45.0% |
| TTTGAGGGGAGAGAATGAGA+GGG | - | chr6_3:28428808-28428827 | None:intergenic | 45.0% | |
| !! | TTTTGAGGGGAGAGAATGAG+AGG | - | chr6_3:28428809-28428828 | None:intergenic | 45.0% |
| ATGAGAGGGTAACATGCAGT+CGG | - | chr6_3:28429243-28429262 | None:intergenic | 45.0% | |
| ! | ACCACCTCTTTTCCCCTTTT+GGG | + | chr6_3:28429404-28429423 | Msa0946610:intron | 45.0% |
| TGCTCTAACATCCCCAAAAG+GGG | - | chr6_3:28429419-28429438 | None:intergenic | 45.0% | |
| GTTGCTCTAACATCCCCAAA+AGG | - | chr6_3:28429421-28429440 | None:intergenic | 45.0% | |
| AATCATGAAGCATACCGTGG+CGG | - | chr6_3:28429459-28429478 | None:intergenic | 45.0% | |
| !! | TTGATGCTGGTTTGACGAGT+TGG | + | chr6_3:28429514-28429533 | Msa0946610:intron | 45.0% |
| !!! | TGTTGGTTTTGGGTTCCGAA+AGG | + | chr6_3:28429670-28429689 | Msa0946610:intron | 45.0% |
| !! | ATGGTTATGGAGACTTGCTG+AGG | + | chr6_3:28429909-28429928 | Msa0946610:intron | 45.0% |
| !! | TTATGGAGACTTGCTGAGGT+GGG | + | chr6_3:28429913-28429932 | Msa0946610:intron | 45.0% |
| !! | GGGTGAATCCTTTTTCGTGT+TGG | + | chr6_3:28429954-28429973 | Msa0946610:intron | 45.0% |
| AACAAATCGGTGAGTGAACC+CGG | - | chr6_3:28429983-28430002 | None:intergenic | 45.0% | |
| GACACGACTGCTCAACAAAT+CGG | - | chr6_3:28429996-28430015 | None:intergenic | 45.0% | |
| GAGTTGGGTACCAACTTAGT+TGG | + | chr6_3:28430031-28430050 | Msa0946610:intron | 45.0% | |
| AGAGCAACTCCCAACTAAGT+TGG | - | chr6_3:28430044-28430063 | None:intergenic | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr6_3:28430309-28430328 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr6_3:28430310-28430329 | None:intergenic | 45.0% | |
| CACACATCCACACACATCAA+TGG | + | chr6_3:28430310-28430329 | Msa0946610:intron | 45.0% | |
| GATTTCCTCAATGCCACCAA+TGG | + | chr6_3:28430337-28430356 | Msa0946610:intron | 45.0% | |
| ! | TGACATAGCTTGTGTGCCAT+TGG | - | chr6_3:28430356-28430375 | None:intergenic | 45.0% |
| ATGGCACACAAGCTATGTCA+TGG | + | chr6_3:28430356-28430375 | Msa0946610:intron | 45.0% | |
| GGAATCCAGATCATGAATGG+TGG | - | chr6_3:28430489-28430508 | None:intergenic | 45.0% | |
| AATCCTTAACATGTGCCCTG+AGG | + | chr6_3:28430706-28430725 | Msa0946610:intron | 45.0% | |
| ATCCTTAACATGTGCCCTGA+GGG | + | chr6_3:28430707-28430726 | Msa0946610:intron | 45.0% | |
| TTCACTGTCGAGCCCAATTT+AGG | + | chr6_3:28430758-28430777 | Msa0946610:intron | 45.0% | |
| !! | TAGCTTTTACGGTTTGGAGG+GGG | + | chr6_3:28431130-28431149 | Msa0946610:intron | 45.0% |
| !! | GGAACAAAGTGTTGGAGCTT+AGG | + | chr6_3:28431182-28431201 | Msa0946610:intron | 45.0% |
| ! | GGAGGAATTGTGACTAGTTG+TGG | + | chr6_3:28431554-28431573 | Msa0946610:intron | 45.0% |
| ! | GAATTGTGACTAGTTGTGGG+TGG | + | chr6_3:28431558-28431577 | Msa0946610:intron | 45.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | - | chr6_3:28427690-28427709 | None:intergenic | 5.0% |
| !! | AAAAATTACAAAAAAATAAA+AGG | + | chr6_3:28428878-28428897 | Msa0946610:intron | 5.0% |
| !! | AAAATTACAAAAAAATAAAA+GGG | + | chr6_3:28428879-28428898 | Msa0946610:intron | 5.0% |
| !! | GGTTATTGGCTTCAGCTTCG+TGG | - | chr6_3:28426762-28426781 | None:intergenic | 50.0% |
| ! | AGCCAAAGAACTTGGCCTTC+CGG | + | chr6_3:28426975-28426994 | Msa0946610:CDS | 50.0% |
| AACCGGAAGGCCAAGTTCTT+TGG | - | chr6_3:28426980-28426999 | None:intergenic | 50.0% | |
| ! | AAAGAACTTGGCCTTCCGGT+TGG | + | chr6_3:28426979-28426998 | Msa0946610:CDS | 50.0% |
| TCCACGGTTTCCATTCCAAC+CGG | - | chr6_3:28426997-28427016 | None:intergenic | 50.0% | |
| CATGGCAGGCAAAATCTACC+AGG | + | chr6_3:28427035-28427054 | Msa0946610:CDS | 50.0% | |
| TGGCAGGCAAAATCTACCAG+GGG | + | chr6_3:28427037-28427056 | Msa0946610:CDS | 50.0% | |
| GTTGTAGCATTGTGAACCCC+TGG | - | chr6_3:28427056-28427075 | None:intergenic | 50.0% | |
| ! | ATTTCCGATCGTTGGGTTGC+CGG | + | chr6_3:28427278-28427297 | Msa0946610:CDS | 50.0% |
| TTATCCGGCAACCCAACGAT+CGG | - | chr6_3:28427285-28427304 | None:intergenic | 50.0% | |
| CATGTCACATGCGAAACACG+TGG | - | chr6_3:28428407-28428426 | None:intergenic | 50.0% | |
| GACATGTATTCATGAGGCGG+AGG | + | chr6_3:28428421-28428440 | Msa0946610:intron | 50.0% | |
| ! | GACTTTGTTTGAGGGTTCGG+AGG | + | chr6_3:28428493-28428512 | Msa0946610:intron | 50.0% |
| GAGAAGGAAGGAGATCGGTT+TGG | + | chr6_3:28428515-28428534 | Msa0946610:intron | 50.0% | |
| ! | TGAAGGGGTTTGGAGGGTTT+TGG | - | chr6_3:28428705-28428724 | None:intergenic | 50.0% |
| ! | TCGGTTTGAAGGGGTTTGGA+GGG | - | chr6_3:28428711-28428730 | None:intergenic | 50.0% |
| ! | TTCGGTTTGAAGGGGTTTGG+AGG | - | chr6_3:28428712-28428731 | None:intergenic | 50.0% |
| !! | CTCGGTTTGAGCGTTTTGAG+GGG | - | chr6_3:28428822-28428841 | None:intergenic | 50.0% |
| !! | GCTCGGTTTGAGCGTTTTGA+GGG | - | chr6_3:28428823-28428842 | None:intergenic | 50.0% |
| GGTCAGCGGTATCACAAGTT+TGG | - | chr6_3:28429198-28429217 | None:intergenic | 50.0% | |
| GGTGAGAGAGAAGAGAGCTA+GGG | - | chr6_3:28429219-28429238 | None:intergenic | 50.0% | |
| TGGTGAGAGAGAAGAGAGCT+AGG | - | chr6_3:28429220-28429239 | None:intergenic | 50.0% | |
| AACGGACGGTGAGAATGAGA+GGG | - | chr6_3:28429257-28429276 | None:intergenic | 50.0% | |
| AAACGGACGGTGAGAATGAG+AGG | - | chr6_3:28429258-28429277 | None:intergenic | 50.0% | |
| GAAACGGAAGAAGGAGAAGG+AGG | - | chr6_3:28429285-28429304 | None:intergenic | 50.0% | |
| AGGGAAACGGAAGAAGGAGA+AGG | - | chr6_3:28429288-28429307 | None:intergenic | 50.0% | |
| GTCTAGAGGGAAACGGAAGA+AGG | - | chr6_3:28429294-28429313 | None:intergenic | 50.0% | |
| TGTCTACGCGGATGTCTAGA+GGG | - | chr6_3:28429307-28429326 | None:intergenic | 50.0% | |
| ATGTCTACGCGGATGTCTAG+AGG | - | chr6_3:28429308-28429327 | None:intergenic | 50.0% | |
| !! | TACATGGTGGCGGTTGTGTT+TGG | - | chr6_3:28429340-28429359 | None:intergenic | 50.0% |
| ! | CACCACCTCTTTTCCCCTTT+TGG | + | chr6_3:28429403-28429422 | Msa0946610:intron | 50.0% |
| ! | CCACCTCTTTTCCCCTTTTG+GGG | + | chr6_3:28429405-28429424 | Msa0946610:intron | 50.0% |
| CATCCCCAAAAGGGGAAAAG+AGG | - | chr6_3:28429411-28429430 | None:intergenic | 50.0% | |
| !! | GCTGGTTTGACGAGTTGGTT+TGG | + | chr6_3:28429519-28429538 | Msa0946610:intron | 50.0% |
| !!! | TGGTTTTGGGTTCCGAAAGG+TGG | + | chr6_3:28429673-28429692 | Msa0946610:intron | 50.0% |
| !! | GTTATGGAGACTTGCTGAGG+TGG | + | chr6_3:28429912-28429931 | Msa0946610:intron | 50.0% |
| !! | TATGGAGACTTGCTGAGGTG+GGG | + | chr6_3:28429914-28429933 | Msa0946610:intron | 50.0% |
| !! | TCCTTTTTCGTGTTGGCGAC+CGG | + | chr6_3:28429961-28429980 | Msa0946610:intron | 50.0% |
| CACAAGCTATGGCACCAAAG+TGG | - | chr6_3:28430229-28430248 | None:intergenic | 50.0% | |
| ! | TGCCATAGCTTGTGTGCCAT+TGG | + | chr6_3:28430235-28430254 | Msa0946610:intron | 50.0% |
| CACCAATGGCACACAAGCTA+TGG | - | chr6_3:28430351-28430370 | None:intergenic | 50.0% | |
| GATGCAAGCTATGGCACCAA+TGG | - | chr6_3:28430254-28430273 | None:intergenic | 50.0% | |
| ! | TGTGGTGGAGATGCAAGCTA+TGG | - | chr6_3:28430263-28430282 | None:intergenic | 50.0% |
| TGTGATGTGTGTGTGTGTGG+TGG | - | chr6_3:28430278-28430297 | None:intergenic | 50.0% | |
| GTGTGTGATGTGTGTGTGTG+TGG | - | chr6_3:28430281-28430300 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr6_3:28430308-28430327 | None:intergenic | 50.0% | |
| ATCCACACACATCAATGGCC+AGG | + | chr6_3:28430315-28430334 | Msa0946610:intron | 50.0% | |
| ATCCTGGCCATTGATGTGTG+TGG | - | chr6_3:28430320-28430339 | None:intergenic | 50.0% | |
| ! | TGGTGGCATTGAGGAAATCC+TGG | - | chr6_3:28430336-28430355 | None:intergenic | 50.0% |
| ! | CATAGCTTGTGTGCCATTGG+TGG | - | chr6_3:28430238-28430257 | None:intergenic | 50.0% |
| !! | GATTAGTCTCCGTAGGACGT+TGG | + | chr6_3:28430419-28430438 | Msa0946610:intron | 50.0% |
| TACCCTCAGGGCACATGTTA+AGG | - | chr6_3:28430712-28430731 | None:intergenic | 50.0% | |
| GGGGATGGTACGCCTAAATT+GGG | - | chr6_3:28430773-28430792 | None:intergenic | 50.0% | |
| TGGGGATGGTACGCCTAAAT+TGG | - | chr6_3:28430774-28430793 | None:intergenic | 50.0% | |
| ! | TGGACCATTGTCGGTTGTGT+GGG | - | chr6_3:28430793-28430812 | None:intergenic | 50.0% |
| ! | TTGGACCATTGTCGGTTGTG+TGG | - | chr6_3:28430794-28430813 | None:intergenic | 50.0% |
| TGTGAATGCTGGGTTGCCTA+TGG | + | chr6_3:28431598-28431617 | Msa0946610:intron | 50.0% | |
| GGAAGGCCAAGTTCTTTGGC+TGG | - | chr6_3:28426976-28426995 | None:intergenic | 55.0% | |
| ! | ACTTGGCCTTCCGGTTGGAA+TGG | + | chr6_3:28426984-28427003 | Msa0946610:CDS | 55.0% |
| CGGTTTCCATTCCAACCGGA+AGG | - | chr6_3:28426993-28427012 | None:intergenic | 55.0% | |
| TCCGGTTGGAATGGAAACCG+TGG | + | chr6_3:28426993-28427012 | Msa0946610:CDS | 55.0% | |
| AAACCAGAGCTCCGCACAAC+GGG | - | chr6_3:28427214-28427233 | None:intergenic | 55.0% | |
| CAAACCAGAGCTCCGCACAA+CGG | - | chr6_3:28427215-28427234 | None:intergenic | 55.0% | |
| ! | CGTTGGGTTGCCGGATAAGT+TGG | + | chr6_3:28427287-28427306 | Msa0946610:CDS | 55.0% |
| GTTTGAGGGTTCGGAGGAGA+AGG | + | chr6_3:28428499-28428518 | Msa0946610:intron | 55.0% | |
| CGGAGGAGAAGGAAGGAGAT+CGG | + | chr6_3:28428510-28428529 | Msa0946610:intron | 55.0% | |
| !! | GGCTCGGTTTGAGCGTTTTG+AGG | - | chr6_3:28428824-28428843 | None:intergenic | 55.0% |
| GAGAAGAGAGCTAGGGTCAG+CGG | - | chr6_3:28429212-28429231 | None:intergenic | 55.0% | |
| AGAGGGTAACATGCAGTCGG+TGG | - | chr6_3:28429240-28429259 | None:intergenic | 55.0% | |
| CGCGGATGTCTAGAGGGAAA+CGG | - | chr6_3:28429301-28429320 | None:intergenic | 55.0% | |
| GCGGTTGTGTTTGGATGTGG+CGG | - | chr6_3:28429331-28429350 | None:intergenic | 55.0% | |
| GTGGCGGTTGTGTTTGGATG+TGG | - | chr6_3:28429334-28429353 | None:intergenic | 55.0% | |
| CACCATGTAGACATCCGCGT+CGG | + | chr6_3:28429351-28429370 | Msa0946610:intron | 55.0% | |
| CCCCAAAAGGGGAAAAGAGG+TGG | - | chr6_3:28429408-28429427 | None:intergenic | 55.0% | |
| GGGGATGTTAGAGCAACCGT+CGG | + | chr6_3:28429424-28429443 | Msa0946610:intron | 55.0% | |
| CGTCACCTCCAAGAGTAAGG+CGG | - | chr6_3:28429560-28429579 | None:intergenic | 55.0% | |
| CGCCTTACTCTTGGAGGTGA+CGG | + | chr6_3:28429558-28429577 | Msa0946610:intron | 55.0% | |
| CACCGTCACCTCCAAGAGTA+AGG | - | chr6_3:28429563-28429582 | None:intergenic | 55.0% | |
| ! | CTTACTCTTGGAGGTGACGG+TGG | + | chr6_3:28429561-28429580 | Msa0946610:intron | 55.0% |
| TGAGCCAACCGAAACTCACG+CGG | - | chr6_3:28429702-28429721 | None:intergenic | 55.0% | |
| ! | CGTGAGTTTCGGTTGGCTCA+CGG | + | chr6_3:28429702-28429721 | Msa0946610:intron | 55.0% |
| ! | AGTTTCGGTTGGCTCACGGT+TGG | + | chr6_3:28429706-28429725 | Msa0946610:intron | 55.0% |
| ! | GTTTCGGTTGGCTCACGGTT+GGG | + | chr6_3:28429707-28429726 | Msa0946610:intron | 55.0% |
| ! | TTTCGGTTGGCTCACGGTTG+GGG | + | chr6_3:28429708-28429727 | Msa0946610:intron | 55.0% |
| GTACAACGACGAGCTAGGAG+CGG | - | chr6_3:28429742-28429761 | None:intergenic | 55.0% | |
| CCTAGCTCGTCGTTGTACGT+CGG | + | chr6_3:28429744-28429763 | Msa0946610:intron | 55.0% | |
| CCAAGTAGAGGGACGCAAAG+AGG | - | chr6_3:28429770-28429789 | None:intergenic | 55.0% | |
| CCTCTTTGCGTCCCTCTACT+TGG | + | chr6_3:28429767-28429786 | Msa0946610:intron | 55.0% | |
| CCAGCAAGCAGCCAAGTAGA+GGG | - | chr6_3:28429781-28429800 | None:intergenic | 55.0% | |
| ACCAGCAAGCAGCCAAGTAG+AGG | - | chr6_3:28429782-28429801 | None:intergenic | 55.0% | |
| !! | CCTTTTTCGTGTTGGCGACC+GGG | + | chr6_3:28429962-28429981 | Msa0946610:intron | 55.0% |
| ! | GTGTGCCATTGGTGGCATTG+AGG | - | chr6_3:28430345-28430364 | None:intergenic | 55.0% |
| ! | CATTGTCGGTTGTGTGGGGA+TGG | - | chr6_3:28430788-28430807 | None:intergenic | 55.0% |
| CATCCCCACACAACCGACAA+TGG | + | chr6_3:28430786-28430805 | Msa0946610:intron | 55.0% | |
| ! | GGACCATTGTCGGTTGTGTG+GGG | - | chr6_3:28430792-28430811 | None:intergenic | 55.0% |
| CTGGGTTGCCTATGGTGACT+TGG | + | chr6_3:28431606-28431625 | Msa0946610:intron | 55.0% | |
| CATGTCACATGCGGCACACG+TGG | - | chr6_3:28428464-28428483 | None:intergenic | 60.0% | |
| GAGGGTTCGGAGGAGAAGGA+AGG | + | chr6_3:28428503-28428522 | Msa0946610:intron | 60.0% | |
| !! | GGATGTGGCGGATGTCTACG+CGG | - | chr6_3:28429319-28429338 | None:intergenic | 60.0% |
| CGCGGATGTCTACATGGTGG+CGG | - | chr6_3:28429350-28429369 | None:intergenic | 60.0% | |
| CGACGCGGATGTCTACATGG+TGG | - | chr6_3:28429353-28429372 | None:intergenic | 60.0% | |
| CACCGACGCGGATGTCTACA+TGG | - | chr6_3:28429356-28429375 | None:intergenic | 60.0% | |
| CATGTAGACATCCGCGTCGG+TGG | + | chr6_3:28429354-28429373 | Msa0946610:intron | 60.0% | |
| !! | TGCAATAGGAGCGCTAGCCG+TGG | - | chr6_3:28429491-28429510 | None:intergenic | 60.0% |
| AGTCGTCGCCGCCTTACTCT+TGG | + | chr6_3:28429549-28429568 | Msa0946610:intron | 60.0% | |
| GAGCCAACCGAAACTCACGC+GGG | - | chr6_3:28429701-28429720 | None:intergenic | 60.0% | |
| CCGACGTACAACGACGAGCT+AGG | - | chr6_3:28429747-28429766 | None:intergenic | 60.0% | |
| CCCTCTACTTGGCTGCTTGC+TGG | + | chr6_3:28429778-28429797 | Msa0946610:intron | 60.0% | |
| ! | TGAGGTGGGGTCGACTCAGT+GGG | + | chr6_3:28429927-28429946 | Msa0946610:intron | 60.0% |
| CCCGGTCGCCAACACGAAAA+AGG | - | chr6_3:28429965-28429984 | None:intergenic | 60.0% | |
| ! | CGGTTTGGAGGGGGCTTATG+AGG | + | chr6_3:28431139-28431158 | Msa0946610:intron | 60.0% |
| TCTCCCGTTGTGCGGAGCTC+TGG | + | chr6_3:28427208-28427227 | Msa0946610:CDS | 65.0% | |
| CGTCGCCGCCTTACTCTTGG+AGG | + | chr6_3:28429552-28429571 | Msa0946610:intron | 65.0% | |
| CAACCAGAACCCACCGCAGG+AGG | - | chr6_3:28429640-28429659 | None:intergenic | 65.0% | |
| ! | CTCCTGCGGTGGGTTCTGGT+TGG | + | chr6_3:28429638-28429657 | Msa0946610:intron | 65.0% |
| CACCAACCAGAACCCACCGC+AGG | - | chr6_3:28429643-28429662 | None:intergenic | 65.0% | |
| CTCACGCGGGAGCCACCTTT+CGG | - | chr6_3:28429688-28429707 | None:intergenic | 65.0% | |
| GGTGGCTCCCGCGTGAGTTT+CGG | + | chr6_3:28429691-28429710 | Msa0946610:intron | 65.0% | |
| GCTCCCGCGTGAGTTTCGGT+TGG | + | chr6_3:28429695-28429714 | Msa0946610:intron | 65.0% | |
| ! | CTGAGGTGGGGTCGACTCAG+TGG | + | chr6_3:28429926-28429945 | Msa0946610:intron | 65.0% |
| ! | GGGTCGACTCAGTGGGTGGT+GGG | + | chr6_3:28429934-28429953 | Msa0946610:intron | 65.0% |
| CGTCGTTCGCACCACCGACG+CGG | - | chr6_3:28429368-28429387 | None:intergenic | 70.0% | |
| ! | CGCGTCGGTGGTGCGAACGA+CGG | + | chr6_3:28429366-28429385 | Msa0946610:intron | 70.0% |
| GTGGCGGTTGCACACGCCGA+CGG | - | chr6_3:28429443-28429462 | None:intergenic | 70.0% | |
| GTCGGCGTGTGCAACCGCCA+CGG | + | chr6_3:28429442-28429461 | Msa0946610:intron | 70.0% | |
| GTCGGAGCCACCTCCTCCTG+CGG | + | chr6_3:28429624-28429643 | Msa0946610:intron | 70.0% | |
| GAGCCACCTCCTCCTGCGGT+GGG | + | chr6_3:28429628-28429647 | Msa0946610:intron | 70.0% | |
| GAACCCACCGCAGGAGGAGG+TGG | - | chr6_3:28429634-28429653 | None:intergenic | 70.0% | |
| CCAGAACCCACCGCAGGAGG+AGG | - | chr6_3:28429637-28429656 | None:intergenic | 70.0% | |
| ! | CCTCCTCCTGCGGTGGGTTC+TGG | + | chr6_3:28429634-28429653 | Msa0946610:intron | 70.0% |
| ! | GGTGGGGTCGACTCAGTGGG+TGG | + | chr6_3:28429930-28429949 | Msa0946610:intron | 70.0% |
| ! | GGGGTCGACTCAGTGGGTGG+TGG | + | chr6_3:28429933-28429952 | Msa0946610:intron | 70.0% |
| GGAGCCACCTCCTCCTGCGG+TGG | + | chr6_3:28429627-28429646 | Msa0946610:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 28426751 | 28431946 | 28426751 | ID=Msa0946610;Name=Msa0946610 |
| chr6_3 | mRNA | 28426751 | 28431946 | 28426751 | ID=Msa0946610-mRNA-1;Parent=Msa0946610;Name=Msa0946610-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0|0|4|0|247 |
| chr6_3 | exon | 28426751 | 28426925 | 28426751 | ID=Msa0946610-mRNA-1:exon:7610;Parent=Msa0946610-mRNA-1 |
| chr6_3 | exon | 28426941 | 28427126 | 28426941 | ID=Msa0946610-mRNA-1:exon:7611;Parent=Msa0946610-mRNA-1 |
| chr6_3 | exon | 28427172 | 28427377 | 28427172 | ID=Msa0946610-mRNA-1:exon:7612;Parent=Msa0946610-mRNA-1 |
| chr6_3 | exon | 28431770 | 28431946 | 28431770 | ID=Msa0946610-mRNA-1:exon:7613;Parent=Msa0946610-mRNA-1 |
| chr6_3 | CDS | 28426751 | 28426925 | 28426751 | ID=Msa0946610-mRNA-1:cds;Parent=Msa0946610-mRNA-1 |
| chr6_3 | CDS | 28426941 | 28427126 | 28426941 | ID=Msa0946610-mRNA-1:cds;Parent=Msa0946610-mRNA-1 |
| chr6_3 | CDS | 28427172 | 28427377 | 28427172 | ID=Msa0946610-mRNA-1:cds;Parent=Msa0946610-mRNA-1 |
| chr6_3 | CDS | 28431770 | 28431946 | 28431770 | ID=Msa0946610-mRNA-1:cds;Parent=Msa0946610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
