Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946620 | XP_039682854.1 | 72.381 | 210 | 38 | 2 | 1 | 190 | 1 | 210 | 3.53e-101 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946620 | sp|D4Q9Z4|SGT2_SOYBN | 48.241 | 199 | 82 | 3 | 5 | 183 | 2 | 199 | 5.65e-56 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0883800 | Msa0946620 | 0.826465 | 2.672357e-54 | -8.615850e-47 |
| Msa0946610 | Msa0946620 | 0.987982 | 2.885458e-172 | -8.615850e-47 |
| Msa0946620 | Msa1090210 | 0.929352 | 7.861178e-93 | -8.615850e-47 |
| Msa0946620 | Msa1090220 | 0.925467 | 1.764975e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946620 | MtrunA17_Chr6g0463891 | 72.038 | 211 | 39 | 2 | 1 | 191 | 1 | 211 | 1.40e-101 | 304 |
| Msa0946620 | MtrunA17_Chr6g0463891 | 96.610 | 59 | 2 | 0 | 189 | 247 | 437 | 495 | 1.81e-29 | 115 |
| Msa0946620 | MtrunA17_Chr7g0231651 | 60.199 | 201 | 60 | 2 | 3 | 183 | 5 | 205 | 1.98e-82 | 245 |
| Msa0946620 | MtrunA17_Chr5g0416821 | 60.697 | 201 | 59 | 2 | 3 | 183 | 5 | 205 | 1.50e-80 | 249 |
| Msa0946620 | MtrunA17_Chr5g0416821 | 79.310 | 58 | 12 | 0 | 189 | 246 | 426 | 483 | 6.09e-21 | 91.3 |
| Msa0946620 | MtrunA17_Chr5g0416741 | 60.697 | 201 | 58 | 3 | 3 | 183 | 4 | 203 | 2.89e-77 | 241 |
| Msa0946620 | MtrunA17_Chr5g0416741 | 76.364 | 55 | 13 | 0 | 189 | 243 | 436 | 490 | 1.99e-18 | 84.0 |
| Msa0946620 | MtrunA17_Chr5g0401851 | 49.223 | 193 | 77 | 3 | 11 | 183 | 9 | 200 | 5.70e-56 | 186 |
| Msa0946620 | MtrunA17_Chr7g0243801 | 46.354 | 192 | 82 | 3 | 7 | 178 | 2 | 192 | 1.77e-47 | 164 |
| Msa0946620 | MtrunA17_Chr7g0243771 | 46.842 | 190 | 80 | 3 | 9 | 178 | 3 | 191 | 4.06e-47 | 162 |
| Msa0946620 | MtrunA17_Chr7g0243771 | 56.364 | 55 | 24 | 0 | 189 | 243 | 428 | 482 | 7.96e-11 | 61.6 |
| Msa0946620 | MtrunA17_Chr7g0243631 | 45.550 | 191 | 83 | 3 | 9 | 179 | 10 | 199 | 2.50e-45 | 158 |
| Msa0946620 | MtrunA17_Chr8g0355221 | 44.670 | 197 | 87 | 4 | 7 | 183 | 10 | 204 | 4.29e-45 | 157 |
| Msa0946620 | MtrunA17_Chr8g0355221 | 60.000 | 55 | 22 | 0 | 189 | 243 | 439 | 493 | 2.56e-11 | 63.2 |
| Msa0946620 | MtrunA17_Chr7g0243951 | 45.745 | 188 | 81 | 3 | 9 | 176 | 8 | 194 | 5.90e-45 | 157 |
| Msa0946620 | MtrunA17_Chr7g0243921 | 43.458 | 214 | 91 | 7 | 1 | 190 | 28 | 235 | 1.61e-44 | 149 |
| Msa0946620 | MtrunA17_Chr7g0243931 | 48.677 | 189 | 74 | 5 | 9 | 176 | 14 | 200 | 5.08e-44 | 155 |
| Msa0946620 | MtrunA17_Chr7g0243681 | 46.316 | 190 | 81 | 3 | 9 | 178 | 8 | 196 | 1.16e-43 | 154 |
| Msa0946620 | MtrunA17_Chr7g0243861 | 45.213 | 188 | 82 | 3 | 9 | 176 | 11 | 197 | 2.25e-43 | 153 |
| Msa0946620 | MtrunA17_Chr1g0165701 | 44.162 | 197 | 88 | 4 | 7 | 183 | 10 | 204 | 5.90e-43 | 152 |
| Msa0946620 | MtrunA17_Chr1g0165701 | 59.322 | 59 | 24 | 0 | 189 | 247 | 436 | 494 | 2.58e-12 | 65.9 |
| Msa0946620 | MtrunA17_Chr7g0235051 | 44.505 | 182 | 80 | 4 | 9 | 185 | 8 | 173 | 1.67e-41 | 147 |
| Msa0946620 | MtrunA17_Chr7g0243761 | 45.876 | 194 | 82 | 4 | 9 | 180 | 8 | 200 | 1.57e-40 | 145 |
| Msa0946620 | MtrunA17_Chr7g0243871 | 41.206 | 199 | 96 | 3 | 5 | 183 | 2 | 199 | 1.62e-40 | 145 |
| Msa0946620 | MtrunA17_Chr4g0060511 | 43.814 | 194 | 83 | 5 | 9 | 178 | 8 | 199 | 2.81e-40 | 144 |
| Msa0946620 | MtrunA17_Chr7g0243781 | 41.206 | 199 | 96 | 3 | 5 | 183 | 2 | 199 | 7.55e-38 | 138 |
| Msa0946620 | MtrunA17_Chr7g0243851 | 40.110 | 182 | 76 | 3 | 9 | 185 | 8 | 161 | 5.01e-34 | 127 |
| Msa0946620 | MtrunA17_Chr7g0243851 | 52.727 | 55 | 26 | 0 | 189 | 243 | 395 | 449 | 8.03e-11 | 61.6 |
| Msa0946620 | MtrunA17_Chr7g0243811 | 43.333 | 180 | 76 | 4 | 24 | 183 | 1 | 174 | 2.51e-31 | 119 |
| Msa0946620 | MtrunA17_Chr4g0066261 | 34.711 | 242 | 124 | 10 | 11 | 225 | 10 | 244 | 5.46e-30 | 116 |
| Msa0946620 | MtrunA17_Chr4g0044501 | 35.450 | 189 | 101 | 3 | 7 | 175 | 5 | 192 | 7.10e-29 | 113 |
| Msa0946620 | MtrunA17_Chr8g0366391 | 32.857 | 210 | 117 | 4 | 5 | 191 | 2 | 210 | 1.88e-28 | 112 |
| Msa0946620 | MtrunA17_Chr4g0066151 | 32.780 | 241 | 132 | 8 | 5 | 225 | 11 | 241 | 2.71e-28 | 112 |
| Msa0946620 | MtrunA17_Chr5g0419761 | 32.743 | 226 | 123 | 7 | 7 | 203 | 4 | 229 | 1.19e-26 | 107 |
| Msa0946620 | MtrunA17_Chr4g0066131 | 32.420 | 219 | 124 | 6 | 1 | 202 | 2 | 213 | 1.88e-26 | 106 |
| Msa0946620 | MtrunA17_Chr4g0044521 | 33.992 | 253 | 124 | 12 | 2 | 228 | 1 | 236 | 1.30e-25 | 104 |
| Msa0946620 | MtrunA17_Chr4g0014061 | 35.714 | 182 | 94 | 5 | 7 | 168 | 4 | 182 | 1.45e-25 | 104 |
| Msa0946620 | MtrunA17_Chr4g0066171 | 38.028 | 142 | 69 | 3 | 11 | 137 | 20 | 157 | 2.50e-24 | 100 |
| Msa0946620 | MtrunA17_Chr8g0374971 | 31.100 | 209 | 127 | 3 | 11 | 202 | 11 | 219 | 8.16e-24 | 99.4 |
| Msa0946620 | MtrunA17_Chr4g0066201 | 39.437 | 142 | 68 | 3 | 11 | 137 | 17 | 155 | 9.83e-24 | 99.4 |
| Msa0946620 | MtrunA17_Chr7g0265141 | 29.741 | 232 | 134 | 4 | 6 | 208 | 3 | 234 | 9.93e-24 | 99.0 |
| Msa0946620 | MtrunA17_Chr4g0066221 | 30.244 | 205 | 125 | 4 | 11 | 197 | 10 | 214 | 5.61e-23 | 97.1 |
| Msa0946620 | MtrunA17_Chr7g0275681 | 30.579 | 242 | 139 | 7 | 14 | 228 | 14 | 253 | 6.75e-23 | 96.7 |
| Msa0946620 | MtrunA17_Chr7g0243711 | 59.494 | 79 | 26 | 2 | 9 | 82 | 8 | 85 | 1.13e-22 | 94.7 |
| Msa0946620 | MtrunA17_Chr7g0265111 | 30.481 | 187 | 105 | 4 | 9 | 174 | 36 | 218 | 1.36e-22 | 96.3 |
| Msa0946620 | MtrunA17_Chr4g0066281 | 29.362 | 235 | 141 | 4 | 7 | 225 | 7 | 232 | 5.81e-22 | 94.0 |
| Msa0946620 | MtrunA17_Chr1g0179901 | 30.570 | 193 | 106 | 5 | 6 | 174 | 10 | 198 | 5.89e-22 | 94.4 |
| Msa0946620 | MtrunA17_Chr4g0044511 | 28.934 | 197 | 122 | 4 | 7 | 187 | 35 | 229 | 1.22e-21 | 93.2 |
| Msa0946620 | MtrunA17_Chr8g0374931 | 35.915 | 142 | 72 | 3 | 11 | 134 | 10 | 150 | 1.55e-21 | 92.8 |
| Msa0946620 | MtrunA17_Chr2g0294921 | 29.577 | 213 | 128 | 5 | 11 | 202 | 159 | 370 | 3.36e-21 | 92.4 |
| Msa0946620 | MtrunA17_Chr7g0265041 | 30.870 | 230 | 127 | 8 | 5 | 203 | 4 | 232 | 3.36e-21 | 92.0 |
| Msa0946620 | MtrunA17_Chr5g0419771 | 29.921 | 254 | 138 | 9 | 9 | 228 | 33 | 280 | 5.67e-21 | 91.3 |
| Msa0946620 | MtrunA17_Chr7g0231631 | 77.966 | 59 | 13 | 0 | 189 | 247 | 212 | 270 | 7.59e-21 | 88.6 |
| Msa0946620 | MtrunA17_Chr2g0294931 | 34.507 | 142 | 74 | 3 | 11 | 134 | 10 | 150 | 1.72e-20 | 90.1 |
| Msa0946620 | MtrunA17_Chr7g0218311 | 35.762 | 151 | 77 | 4 | 1 | 133 | 6 | 154 | 4.11e-20 | 89.0 |
| Msa0946620 | MtrunA17_Chr8g0352711 | 86.364 | 44 | 6 | 0 | 204 | 247 | 1 | 44 | 5.18e-20 | 80.5 |
| Msa0946620 | MtrunA17_Chr8g0350881 | 36.170 | 141 | 73 | 3 | 11 | 134 | 11 | 151 | 6.78e-20 | 88.2 |
| Msa0946620 | MtrunA17_Chr8g0374941 | 37.267 | 161 | 75 | 6 | 11 | 146 | 948 | 1107 | 8.70e-20 | 88.2 |
| Msa0946620 | MtrunA17_Chr8g0374941 | 37.267 | 161 | 75 | 6 | 11 | 146 | 10 | 169 | 9.39e-20 | 88.2 |
| Msa0946620 | MtrunA17_Chr8g0374941 | 29.032 | 248 | 154 | 6 | 11 | 240 | 475 | 718 | 1.97e-17 | 81.6 |
| Msa0946620 | MtrunA17_Chr5g0410941 | 35.714 | 140 | 71 | 4 | 11 | 134 | 22 | 158 | 1.67e-19 | 87.0 |
| Msa0946620 | MtrunA17_Chr5g0428081 | 32.374 | 139 | 78 | 2 | 11 | 134 | 10 | 147 | 1.40e-18 | 84.3 |
| Msa0946620 | MtrunA17_Chr8g0374901 | 34.752 | 141 | 75 | 3 | 11 | 134 | 11 | 151 | 5.46e-17 | 79.7 |
| Msa0946620 | MtrunA17_Chr4g0044481 | 30.688 | 189 | 84 | 4 | 6 | 174 | 21 | 182 | 9.14e-17 | 79.0 |
| Msa0946620 | MtrunA17_Chr4g0011051 | 32.035 | 231 | 110 | 12 | 11 | 202 | 8 | 230 | 9.52e-17 | 79.0 |
| Msa0946620 | MtrunA17_Chr6g0463851 | 31.472 | 197 | 100 | 6 | 11 | 183 | 10 | 195 | 1.45e-16 | 78.6 |
| Msa0946620 | MtrunA17_Chr7g0265051 | 28.400 | 250 | 143 | 10 | 11 | 228 | 8 | 253 | 1.52e-16 | 78.6 |
| Msa0946620 | MtrunA17_Chr7g0265101 | 33.514 | 185 | 94 | 7 | 14 | 172 | 11 | 192 | 2.21e-16 | 78.2 |
| Msa0946620 | MtrunA17_Chr7g0265151 | 29.018 | 224 | 132 | 7 | 5 | 202 | 2 | 224 | 3.22e-16 | 77.4 |
| Msa0946620 | MtrunA17_Chr4g0066141 | 34.483 | 145 | 73 | 5 | 40 | 168 | 8 | 146 | 3.77e-15 | 73.9 |
| Msa0946620 | MtrunA17_Chr6g0463861 | 26.087 | 230 | 151 | 5 | 11 | 225 | 10 | 235 | 4.45e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946620 | AT2G15490.2 | 29.924 | 264 | 148 | 7 | 13 | 240 | 8 | 270 | 5.84e-28 | 107 |
| Msa0946620 | AT3G53150.1 | 31.746 | 252 | 142 | 7 | 6 | 228 | 16 | 266 | 2.06e-27 | 110 |
| Msa0946620 | AT4G34131.1 | 32.124 | 193 | 102 | 4 | 11 | 175 | 9 | 200 | 8.62e-24 | 99.8 |
| Msa0946620 | AT2G36750.1 | 29.787 | 235 | 135 | 6 | 11 | 216 | 9 | 242 | 3.61e-23 | 97.8 |
| Msa0946620 | AT4G34135.2 | 31.818 | 220 | 112 | 5 | 11 | 202 | 10 | 219 | 1.24e-22 | 95.1 |
| Msa0946620 | AT4G34135.1 | 32.500 | 200 | 106 | 4 | 11 | 182 | 10 | 208 | 3.78e-22 | 95.1 |
| Msa0946620 | AT2G36780.1 | 28.814 | 236 | 139 | 5 | 10 | 216 | 12 | 247 | 1.02e-21 | 94.0 |
| Msa0946620 | AT2G15490.1 | 30.097 | 206 | 115 | 5 | 13 | 191 | 8 | 211 | 5.03e-21 | 91.7 |
| Msa0946620 | AT2G15490.3 | 30.097 | 206 | 115 | 5 | 13 | 191 | 8 | 211 | 5.07e-21 | 91.7 |
| Msa0946620 | AT2G36770.1 | 28.085 | 235 | 140 | 5 | 11 | 216 | 13 | 247 | 7.52e-21 | 91.3 |
| Msa0946620 | AT2G15480.2 | 29.167 | 192 | 109 | 4 | 8 | 172 | 6 | 197 | 1.23e-18 | 85.1 |
| Msa0946620 | AT2G15480.1 | 29.167 | 192 | 109 | 4 | 8 | 172 | 6 | 197 | 1.39e-18 | 84.7 |
| Msa0946620 | AT2G36800.1 | 28.507 | 221 | 130 | 6 | 1 | 197 | 1 | 217 | 1.07e-17 | 82.4 |
| Msa0946620 | AT2G36790.1 | 29.381 | 194 | 111 | 5 | 7 | 174 | 4 | 197 | 1.13e-17 | 82.0 |
| Msa0946620 | AT2G36760.1 | 30.108 | 186 | 106 | 5 | 11 | 173 | 13 | 197 | 6.02e-17 | 80.1 |
| Msa0946620 | AT4G34138.1 | 31.875 | 160 | 80 | 4 | 7 | 137 | 6 | 165 | 2.16e-16 | 78.6 |
| Msa0946620 | AT3G53160.1 | 27.179 | 195 | 116 | 5 | 1 | 173 | 1 | 191 | 5.03e-15 | 74.3 |
Find 62 sgRNAs with CRISPR-Local
Find 430 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATAACCTTCAGGTTAT+TGG | 0.180899 | 6_3:+28448400 | None:intergenic |
| AACCGGAAGGCCAAGTTCTT+TGG | 0.291160 | 6_3:+28448196 | None:intergenic |
| AAATTGAGAATTACTTGTTT+GGG | 0.292417 | 6_3:-28448094 | Msa0946620:CDS |
| CAAATTGAGAATTACTTGTT+TGG | 0.304470 | 6_3:-28448095 | Msa0946620:CDS |
| TTGATTGAAATCACGATCTA+TGG | 0.310365 | 6_3:+28448256 | None:intergenic |
| ATTTCCGATCGTTGGGTTGC+CGG | 0.332700 | 6_3:-28447895 | Msa0946620:CDS |
| GTTGCTTGTGGTGGCAATTA+TGG | 0.333546 | 6_3:+28448298 | None:intergenic |
| AACAAGTAATTCTCAATTTG+AGG | 0.364646 | 6_3:+28448098 | None:intergenic |
| TCTCCCGTTGTGCGGAGCTC+TGG | 0.383719 | 6_3:-28447965 | Msa0946620:CDS |
| GAGGATATTGCAAAGGCTAT+TGG | 0.392485 | 6_3:-28443419 | Msa0946620:intron |
| AGTCTTGCCATGTCAATCAT+TGG | 0.396893 | 6_3:+28448347 | None:intergenic |
| CGTTGGGTTGCCGGATAAGT+TGG | 0.399970 | 6_3:-28447886 | Msa0946620:CDS |
| TATTGCAAAGGCTATTGGTT+TGG | 0.420024 | 6_3:-28443414 | Msa0946620:intron |
| TATGATAAATTTCCGATCGT+TGG | 0.422383 | 6_3:-28447903 | Msa0946620:CDS |
| AAACCAGAGCTCCGCACAAC+GGG | 0.425051 | 6_3:+28447962 | None:intergenic |
| CTCAAACATCAAAGGCACTA+TGG | 0.425882 | 6_3:-28443257 | Msa0946620:CDS |
| AGCCAAAGAACTTGGCCTTC+CGG | 0.443204 | 6_3:-28448198 | Msa0946620:CDS |
| ATGATAAATTTCCGATCGTT+GGG | 0.443915 | 6_3:-28447902 | Msa0946620:CDS |
| GATCGGAAATTTATCATAAT+CGG | 0.444384 | 6_3:+28447908 | None:intergenic |
| CTAGTCATCTCCAACTTATC+CGG | 0.445123 | 6_3:+28447876 | None:intergenic |
| GTCTTGCCATGTCAATCATT+GGG | 0.453709 | 6_3:+28448348 | None:intergenic |
| AGGGAAGGAAAATAACCTTC+AGG | 0.459626 | 6_3:+28448393 | None:intergenic |
| GAGTTTCCAGCCAAAGAACT+TGG | 0.460160 | 6_3:-28448206 | Msa0946620:CDS |
| TCCACGGTTTCCATTCCAAC+CGG | 0.464705 | 6_3:+28448179 | None:intergenic |
| ATTGGTTTGGTGATGACAAA+TGG | 0.465565 | 6_3:-28443401 | Msa0946620:CDS |
| GGTTATTGGCTTCAGCTTCG+TGG | 0.465576 | 6_3:+28448414 | None:intergenic |
| CATGTGACTTGTTGATAAGA+AGG | 0.466349 | 6_3:+28448373 | None:intergenic |
| GCTAAAGCTTTGAGTGATGA+TGG | 0.468067 | 6_3:-28443350 | Msa0946620:CDS |
| TGCCATGTCAACAGGAGTAT+TGG | 0.469792 | 6_3:+28448154 | None:intergenic |
| CTAGATTACAGTTACCAGAT+TGG | 0.471509 | 6_3:-28447857 | Msa0946620:CDS |
| ACTTGGCCTTCCGGTTGGAA+TGG | 0.499483 | 6_3:-28448189 | Msa0946620:CDS |
| CATGGCAGGCAAAATCTACC+AGG | 0.499860 | 6_3:-28448138 | Msa0946620:CDS |
| GGAAGGCCAAGTTCTTTGGC+TGG | 0.505355 | 6_3:+28448200 | None:intergenic |
| GTTATTGGCTTCAGCTTCGT+GGG | 0.524130 | 6_3:+28448415 | None:intergenic |
| AAAGAACTTGGCCTTCCGGT+TGG | 0.533653 | 6_3:-28448194 | Msa0946620:CDS |
| GGAAAGAAAGCTATACTTGT+TGG | 0.533864 | 6_3:-28443329 | Msa0946620:CDS |
| GACAAATGGAAAAGAAGTTG+AGG | 0.535146 | 6_3:-28443387 | Msa0946620:CDS |
| AAATTTGATACAAATAATTG+AGG | 0.545066 | 6_3:-28443291 | Msa0946620:CDS |
| AATACTCCTGTTGACATGGC+AGG | 0.556376 | 6_3:-28448152 | Msa0946620:CDS |
| AAGAAAGCTATACTTGTTGG+TGG | 0.563374 | 6_3:-28443326 | Msa0946620:CDS |
| AACAGGAGTATTGGCATCCA+CGG | 0.569431 | 6_3:+28448163 | None:intergenic |
| AATTGAGAATTACTTGTTTG+GGG | 0.570222 | 6_3:-28448093 | Msa0946620:CDS |
| GTTGTAGCATTGTGAACCCC+TGG | 0.577956 | 6_3:+28448120 | None:intergenic |
| ATGTGACTTGTTGATAAGAA+GGG | 0.590692 | 6_3:+28448374 | None:intergenic |
| CGGTTTCCATTCCAACCGGA+AGG | 0.594491 | 6_3:+28448183 | None:intergenic |
| CAACGGGAGAAAATACTTGA+CGG | 0.610733 | 6_3:+28447978 | None:intergenic |
| AATATTTGCGTTGCTTGTGG+TGG | 0.611099 | 6_3:+28448289 | None:intergenic |
| GACTTGTTGATAAGAAGGGA+AGG | 0.612405 | 6_3:+28448378 | None:intergenic |
| TGCCAATACTCCTGTTGACA+TGG | 0.613415 | 6_3:-28448156 | Msa0946620:CDS |
| TTAAGTCACTCAAACATCAA+AGG | 0.613763 | 6_3:-28443265 | Msa0946620:CDS |
| CATGATCCCAATGATTGACA+TGG | 0.613945 | 6_3:-28448354 | Msa0946620:CDS |
| ATCATAATCGGACTCCACCT+CGG | 0.622629 | 6_3:+28447920 | None:intergenic |
| TTATCCGGCAACCCAACGAT+CGG | 0.624908 | 6_3:+28447891 | None:intergenic |
| AGCTGAAGCCAATAACCTGA+AGG | 0.631583 | 6_3:-28448408 | Msa0946620:CDS |
| GCAAGACTATTTGCTATGCA+TGG | 0.643610 | 6_3:-28448332 | Msa0946620:CDS |
| TCCGGTTGGAATGGAAACCG+TGG | 0.646953 | 6_3:-28448180 | Msa0946620:CDS |
| ATGGCAGGCAAAATCTACCA+GGG | 0.667440 | 6_3:-28448137 | Msa0946620:CDS |
| ACTATTTGCTATGCATGGTG+TGG | 0.674048 | 6_3:-28448327 | Msa0946620:CDS |
| CAAACCAGAGCTCCGCACAA+CGG | 0.678563 | 6_3:+28447961 | None:intergenic |
| ACAAAATTCAAGTCATACCG+AGG | 0.687981 | 6_3:-28447937 | Msa0946620:CDS |
| AAATTCAAGTCATACCGAGG+TGG | 0.706696 | 6_3:-28447934 | Msa0946620:CDS |
| TGGCAGGCAAAATCTACCAG+GGG | 0.729335 | 6_3:-28448136 | Msa0946620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGAAATGAATTAA+GGG | + | chr6_3:28443886-28443905 | None:intergenic | 10.0% |
| !! | AAATTTATTGAAATGAATTA+AGG | + | chr6_3:28443887-28443906 | None:intergenic | 10.0% |
| !! | AAAAAGTTAACTAAAAAATA+GGG | - | chr6_3:28444353-28444372 | Msa0946620:intron | 10.0% |
| !!! | TTTAGAGTTAAATATATTTT+TGG | + | chr6_3:28444471-28444490 | None:intergenic | 10.0% |
| !!! | ATTTATTTTTATAAATGGAA+AGG | + | chr6_3:28444673-28444692 | None:intergenic | 10.0% |
| !! | TTTCCATTTATAAAAATAAA+TGG | - | chr6_3:28444672-28444691 | Msa0946620:intron | 10.0% |
| !!! | TGTTATGATTTTTTTTTTTA+GGG | + | chr6_3:28445155-28445174 | None:intergenic | 10.0% |
| !!! | TTGTTATGATTTTTTTTTTT+AGG | + | chr6_3:28445156-28445175 | None:intergenic | 10.0% |
| !!! | ACAATAATTTTTTTCATATA+GGG | - | chr6_3:28445539-28445558 | Msa0946620:intron | 10.0% |
| !! | ACAATAAATAAGTATTTATA+AGG | - | chr6_3:28445571-28445590 | Msa0946620:intron | 10.0% |
| !!! | TCATTAGTTTTTTTTTTATA+AGG | + | chr6_3:28446586-28446605 | None:intergenic | 10.0% |
| !!! | TATTATTTAAGGTTATTATT+TGG | + | chr6_3:28447017-28447036 | None:intergenic | 10.0% |
| !! | TTAATTTACTCTATTATTTA+AGG | + | chr6_3:28447028-28447047 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTCAATTTTGT+TGG | + | chr6_3:28447441-28447460 | None:intergenic | 10.0% |
| !!! | TTTTTATTCACTAAACTATT+TGG | - | chr6_3:28443951-28443970 | Msa0946620:intron | 15.0% |
| !! | AAAAGTTGACATATTTATAA+GGG | + | chr6_3:28444021-28444040 | None:intergenic | 15.0% |
| !!! | GTTAAAAAAATTCTTTTCTT+AGG | - | chr6_3:28444279-28444298 | Msa0946620:intron | 15.0% |
| !! | CAAAAAGTTAACTAAAAAAT+AGG | - | chr6_3:28444352-28444371 | Msa0946620:intron | 15.0% |
| !!! | TAGTGTTTGAAAATTTTATA+GGG | - | chr6_3:28444384-28444403 | Msa0946620:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | - | chr6_3:28444444-28444463 | Msa0946620:intron | 15.0% |
| !!! | TCTCCATTTATTTTTATAAA+TGG | + | chr6_3:28444678-28444697 | None:intergenic | 15.0% |
| !! | ATCTTGAAAATAAATAATGA+TGG | + | chr6_3:28444766-28444785 | None:intergenic | 15.0% |
| !! | ATAACAACATAAATTAGATT+TGG | - | chr6_3:28445169-28445188 | Msa0946620:intron | 15.0% |
| !!! | TAAAATTTTTGATACATAGA+AGG | + | chr6_3:28445450-28445469 | None:intergenic | 15.0% |
| !!! | CACAATAATTTTTTTCATAT+AGG | - | chr6_3:28445538-28445557 | Msa0946620:intron | 15.0% |
| !!! | TAGTTTTTTTTTTATAAGGT+CGG | + | chr6_3:28446582-28446601 | None:intergenic | 15.0% |
| !!! | TATTCATGTCATTTATTTTT+GGG | + | chr6_3:28446689-28446708 | None:intergenic | 15.0% |
| !!! | ATATTCATGTCATTTATTTT+TGG | + | chr6_3:28446690-28446709 | None:intergenic | 15.0% |
| !! | AAATAATAGAGTAAATTAAG+TGG | - | chr6_3:28447029-28447048 | Msa0946620:intron | 15.0% |
| !! | TAATAAATATTTACCATTTG+TGG | - | chr6_3:28447182-28447201 | Msa0946620:intron | 15.0% |
| !! | AAAACAAAAAAAAAGTTAGT+CGG | + | chr6_3:28447322-28447341 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTTTCGTTTTTT+AGG | - | chr6_3:28447331-28447350 | Msa0946620:intron | 15.0% |
| !!! | TTAAACATAATTTGTTATGA+AGG | - | chr6_3:28447562-28447581 | Msa0946620:intron | 15.0% |
| !! | AAATTTGATACAAATAATTG+AGG | - | chr6_3:28448381-28448400 | Msa0946620:CDS | 15.0% |
| !! | AAATTGAGAATTACTTGTTT+GGG | - | chr6_3:28443578-28443597 | Msa0946620:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+AGG | + | chr6_3:28444022-28444041 | None:intergenic | 20.0% |
| !!! | AGTTGAAGAAATTTTTTAGA+GGG | + | chr6_3:28444053-28444072 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGAAATTTTTTAG+AGG | + | chr6_3:28444054-28444073 | None:intergenic | 20.0% |
| !!! | AAATTTTCAAACACTACTTT+TGG | + | chr6_3:28444380-28444399 | None:intergenic | 20.0% |
| !!! | GTAGTGTTTGAAAATTTTAT+AGG | - | chr6_3:28444383-28444402 | Msa0946620:intron | 20.0% |
| !!! | CGAAAAGTTGATATATTTAT+AGG | - | chr6_3:28444443-28444462 | Msa0946620:intron | 20.0% |
| !! | ATTGTCATTAATAAAGAGAT+AGG | - | chr6_3:28444697-28444716 | Msa0946620:intron | 20.0% |
| !! | TGAAAATAAATAATGATGGT+GGG | + | chr6_3:28444762-28444781 | None:intergenic | 20.0% |
| !! | TTGAAAATAAATAATGATGG+TGG | + | chr6_3:28444763-28444782 | None:intergenic | 20.0% |
| !!! | AATTTTAGGGATTTAGTTTT+CGG | + | chr6_3:28445228-28445247 | None:intergenic | 20.0% |
| !! | TGGAAAGAATACATAATTAT+GGG | + | chr6_3:28445258-28445277 | None:intergenic | 20.0% |
| !!! | TATTTTAACTAACGAATTGT+AGG | - | chr6_3:28445668-28445687 | Msa0946620:intron | 20.0% |
| !! | AAGGTTATTATTTGGATATA+TGG | + | chr6_3:28447009-28447028 | None:intergenic | 20.0% |
| !!! | TCAAAATAGAAATTTTGTCT+AGG | - | chr6_3:28447113-28447132 | Msa0946620:intron | 20.0% |
| !! | TAATAAGGGTTATTTGATAT+GGG | - | chr6_3:28447988-28448007 | Msa0946620:CDS | 20.0% |
| ! | AACAAGTAATTCTCAATTTG+AGG | + | chr6_3:28443577-28443596 | None:intergenic | 25.0% |
| ! | CAAATTGAGAATTACTTGTT+TGG | - | chr6_3:28443577-28443596 | Msa0946620:intron | 25.0% |
| ! | AATTGAGAATTACTTGTTTG+GGG | - | chr6_3:28443579-28443598 | Msa0946620:intron | 25.0% |
| ! | GATCGGAAATTTATCATAAT+CGG | + | chr6_3:28443767-28443786 | None:intergenic | 25.0% |
| ! | ATCTTTGCAAAAAACATATC+TGG | + | chr6_3:28443850-28443869 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTGCAAAGATG+TGG | - | chr6_3:28443851-28443870 | Msa0946620:intron | 25.0% |
| ! | GCGTTTATAAGTTTATTCAA+AGG | - | chr6_3:28443924-28443943 | Msa0946620:intron | 25.0% |
| !! | AAATTTATCCTTGTTTGGTT+TGG | + | chr6_3:28443977-28443996 | None:intergenic | 25.0% |
| !! | ACCAAACAAGGATAAATTTT+AGG | - | chr6_3:28443978-28443997 | Msa0946620:intron | 25.0% |
| !! | CCAAACAAGGATAAATTTTA+GGG | - | chr6_3:28443979-28443998 | Msa0946620:intron | 25.0% |
| ! | AAGTGAAGATGAAAAACTTT+CGG | + | chr6_3:28444085-28444104 | None:intergenic | 25.0% |
| !! | AAGTTTTTCATCTTCACTTT+TGG | - | chr6_3:28444086-28444105 | Msa0946620:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+AGG | - | chr6_3:28444413-28444432 | Msa0946620:intron | 25.0% |
| !!! | TCATCTTTTTTACGAGTAAA+TGG | - | chr6_3:28444572-28444591 | Msa0946620:intron | 25.0% |
| !! | TATTCATAAGACTTTGTTTG+AGG | - | chr6_3:28444984-28445003 | Msa0946620:intron | 25.0% |
| !! | ATTCATAAGACTTTGTTTGA+GGG | - | chr6_3:28444985-28445004 | Msa0946620:intron | 25.0% |
| ! | TTTGGAAGAATGATATTAGA+GGG | - | chr6_3:28445033-28445052 | Msa0946620:intron | 25.0% |
| ! | AAAGAATACATAATTATGGG+CGG | + | chr6_3:28445255-28445274 | None:intergenic | 25.0% |
| ! | GTGGAAAGAATACATAATTA+TGG | + | chr6_3:28445259-28445278 | None:intergenic | 25.0% |
| !!! | TTAATGCCTCAATTTTTTGT+AGG | + | chr6_3:28445343-28445362 | None:intergenic | 25.0% |
| ! | GATTACTCATTACATATTCA+GGG | + | chr6_3:28445419-28445438 | None:intergenic | 25.0% |
| ! | TGATTACTCATTACATATTC+AGG | + | chr6_3:28445420-28445439 | None:intergenic | 25.0% |
| !!! | TGGTTTTGTTGTTTTGATAT+CGG | - | chr6_3:28446296-28446315 | Msa0946620:intron | 25.0% |
| ! | GACATGAATATGTTTAATGT+CGG | - | chr6_3:28446699-28446718 | Msa0946620:intron | 25.0% |
| ! | AAGAATGGTTTGACATTAAA+CGG | + | chr6_3:28446890-28446909 | None:intergenic | 25.0% |
| ! | ACTAATCAAGTATCTAAGAA+TGG | + | chr6_3:28446905-28446924 | None:intergenic | 25.0% |
| !!! | TTCATTGGTTCATAATAGTA+GGG | + | chr6_3:28446959-28446978 | None:intergenic | 25.0% |
| !!! | ATTCATTGGTTCATAATAGT+AGG | + | chr6_3:28446960-28446979 | None:intergenic | 25.0% |
| !!! | TCGACAGTGAAATATTTTTA+GGG | + | chr6_3:28447248-28447267 | None:intergenic | 25.0% |
| !!! | TCGTTTTTTAGGAAAAACTT+TGG | - | chr6_3:28447342-28447361 | Msa0946620:intron | 25.0% |
| !! | TGTTAATTCTACGATTTTTG+AGG | + | chr6_3:28447418-28447437 | None:intergenic | 25.0% |
| !!! | AACATAATTTGTTATGAAGG+CGG | - | chr6_3:28447565-28447584 | Msa0946620:intron | 25.0% |
| ! | AATACAAGTAGTAAAAGCTA+TGG | - | chr6_3:28447593-28447612 | Msa0946620:intron | 25.0% |
| ! | TATCTAGTTGTGATTTCATT+TGG | - | chr6_3:28447894-28447913 | Msa0946620:CDS | 25.0% |
| ! | ATCTAGTTGTGATTTCATTT+GGG | - | chr6_3:28447895-28447914 | Msa0946620:CDS | 25.0% |
| ! | CGTAAAAGTAATGATAAAGA+AGG | - | chr6_3:28447923-28447942 | Msa0946620:CDS | 25.0% |
| !! | TAAAGAAGGTGAAGATTTTA+TGG | - | chr6_3:28447937-28447956 | Msa0946620:CDS | 25.0% |
| ! | AAGAGTGAAAGAAAGTAATA+AGG | - | chr6_3:28447973-28447992 | Msa0946620:CDS | 25.0% |
| ! | AGAGTGAAAGAAAGTAATAA+GGG | - | chr6_3:28447974-28447993 | Msa0946620:CDS | 25.0% |
| ! | GTAATAAGGGTTATTTGATA+TGG | - | chr6_3:28447987-28448006 | Msa0946620:CDS | 25.0% |
| ! | AATAAGGGTTATTTGATATG+GGG | - | chr6_3:28447989-28448008 | Msa0946620:CDS | 25.0% |
| ! | AAAAATTGCTCAGCAAATAA+AGG | + | chr6_3:28448130-28448149 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTCATGAGAAAT+TGG | - | chr6_3:28448141-28448160 | Msa0946620:CDS | 25.0% |
| !!! | ATTTTTTCATGAGAAATTGG+TGG | - | chr6_3:28448144-28448163 | Msa0946620:CDS | 25.0% |
| !! | TGGTTGAAGTGTTAAAAATT+GGG | - | chr6_3:28448164-28448183 | Msa0946620:CDS | 25.0% |
| ! | GAAAATAACCTTCAGGTTAT+TGG | + | chr6_3:28443275-28443294 | None:intergenic | 30.0% |
| !! | ATGTGACTTGTTGATAAGAA+GGG | + | chr6_3:28443301-28443320 | None:intergenic | 30.0% |
| AAAAATATTTGCGTTGCTTG+TGG | + | chr6_3:28443389-28443408 | None:intergenic | 30.0% | |
| TTGATTGAAATCACGATCTA+TGG | + | chr6_3:28443419-28443438 | None:intergenic | 30.0% | |
| ATAGATCGTGATTTCAATCA+AGG | - | chr6_3:28443418-28443437 | Msa0946620:intron | 30.0% | |
| !! | GACGGATTAAAAACAATTCT+TGG | + | chr6_3:28443679-28443698 | None:intergenic | 30.0% |
| TATGATAAATTTCCGATCGT+TGG | - | chr6_3:28443769-28443788 | Msa0946620:intron | 30.0% | |
| ATGATAAATTTCCGATCGTT+GGG | - | chr6_3:28443770-28443789 | Msa0946620:intron | 30.0% | |
| CCCTAAAATTTATCCTTGTT+TGG | + | chr6_3:28443982-28444001 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr6_3:28444399-28444418 | Msa0946620:intron | 30.0% | |
| !!! | CGCTTCGTTTTTGTTTTTAA+GGG | + | chr6_3:28444608-28444627 | None:intergenic | 30.0% |
| CCTTAAAAACAAAAACGAAG+CGG | - | chr6_3:28444606-28444625 | Msa0946620:intron | 30.0% | |
| CTTAAAAACAAAAACGAAGC+GGG | - | chr6_3:28444607-28444626 | Msa0946620:intron | 30.0% | |
| AGAGATAGGAGACAAAAAAT+AGG | - | chr6_3:28444711-28444730 | Msa0946620:intron | 30.0% | |
| ! | TGGTGGATCTTATTAGTAAA+TGG | - | chr6_3:28444734-28444753 | Msa0946620:intron | 30.0% |
| GGTGGATCTTATTAGTAAAT+GGG | - | chr6_3:28444735-28444754 | Msa0946620:intron | 30.0% | |
| GTCTCTTCAAATTGAAGAAA+TGG | - | chr6_3:28444799-28444818 | Msa0946620:intron | 30.0% | |
| GGAGAAGAGTTTAAATAGAT+AGG | - | chr6_3:28444820-28444839 | Msa0946620:intron | 30.0% | |
| TTATGAATACATGTCACATG+CGG | + | chr6_3:28444973-28444992 | None:intergenic | 30.0% | |
| GTTTGGAAGAATGATATTAG+AGG | - | chr6_3:28445032-28445051 | Msa0946620:intron | 30.0% | |
| !!! | ATTTAGTTTTCGGTTTGAAG+GGG | + | chr6_3:28445218-28445237 | None:intergenic | 30.0% |
| !!! | GATTTAGTTTTCGGTTTGAA+GGG | + | chr6_3:28445219-28445238 | None:intergenic | 30.0% |
| AAGAATACATAATTATGGGC+GGG | + | chr6_3:28445254-28445273 | None:intergenic | 30.0% | |
| CGTTCTATTGAGAAATATGT+CGG | - | chr6_3:28446104-28446123 | Msa0946620:intron | 30.0% | |
| !!! | GTGCAAAATTTGTTGGTTTT+GGG | - | chr6_3:28446158-28446177 | Msa0946620:intron | 30.0% |
| TGTTTACTCATACTTAGACT+CGG | - | chr6_3:28446369-28446388 | Msa0946620:intron | 30.0% | |
| AGATTAGACAGATTAGAGTT+GGG | - | chr6_3:28446514-28446533 | Msa0946620:intron | 30.0% | |
| GAAATTTCGATACATTGTGA+CGG | - | chr6_3:28446629-28446648 | Msa0946620:intron | 30.0% | |
| ! | AAATGCTAACTTGTGCATTT+AGG | - | chr6_3:28447074-28447093 | Msa0946620:intron | 30.0% |
| !!! | CGACAGTGAAATATTTTTAG+GGG | + | chr6_3:28447247-28447266 | None:intergenic | 30.0% |
| ! | CTCGACAGTGAAATATTTTT+AGG | + | chr6_3:28447249-28447268 | None:intergenic | 30.0% |
| ! | AAAAGTTAGTCGGTTCTATT+TGG | + | chr6_3:28447312-28447331 | None:intergenic | 30.0% |
| TTTAGGAAAAACTTTGGATC+AGG | - | chr6_3:28447348-28447367 | Msa0946620:intron | 30.0% | |
| ACATACACACACGTATATAA+GGG | + | chr6_3:28447485-28447504 | None:intergenic | 30.0% | |
| ! | GCAGTATTCAATAGCTTTTA+CGG | - | chr6_3:28447617-28447636 | Msa0946620:intron | 30.0% |
| ! | ATTCAATAGCTTTTACGGTT+TGG | - | chr6_3:28447622-28447641 | Msa0946620:intron | 30.0% |
| ! | AAACCAAGATGTTTCTGATA+AGG | - | chr6_3:28447721-28447740 | Msa0946620:intron | 30.0% |
| !! | GAGATAGTGGTTTGTTTAAA+TGG | - | chr6_3:28447771-28447790 | Msa0946620:intron | 30.0% |
| ! | TCTGTTCTCTATGTAAGTTT+TGG | - | chr6_3:28447815-28447834 | Msa0946620:intron | 30.0% |
| ! | TTTCAATGAGTTGAGATGAT+GGG | + | chr6_3:28447856-28447875 | None:intergenic | 30.0% |
| ! | ATTTCAATGAGTTGAGATGA+TGG | + | chr6_3:28447857-28447876 | None:intergenic | 30.0% |
| ATACTTGAGAACAAAGCTAT+TGG | - | chr6_3:28448031-28448050 | Msa0946620:intron | 30.0% | |
| ! | GTGGTTGAAGTGTTAAAAAT+TGG | - | chr6_3:28448163-28448182 | Msa0946620:CDS | 30.0% |
| ! | GGTTGAAGTGTTAAAAATTG+GGG | - | chr6_3:28448165-28448184 | Msa0946620:CDS | 30.0% |
| GGGTTAGAAAATGGAAAAAT+TGG | - | chr6_3:28448197-28448216 | Msa0946620:CDS | 30.0% | |
| ATACTAACGACATTGTGAAA+AGG | - | chr6_3:28448230-28448249 | Msa0946620:CDS | 30.0% | |
| TACTAACGACATTGTGAAAA+GGG | - | chr6_3:28448231-28448250 | Msa0946620:CDS | 30.0% | |
| TTAAGTCACTCAAACATCAA+AGG | - | chr6_3:28448407-28448426 | Msa0946620:CDS | 30.0% | |
| !! | CATGTGACTTGTTGATAAGA+AGG | + | chr6_3:28443302-28443321 | None:intergenic | 35.0% |
| !! | TTAGTGACTTGCTTTATGCA+TGG | - | chr6_3:28443623-28443642 | Msa0946620:intron | 35.0% |
| ! | TAACTTTTCTGCAACATCGA+CGG | + | chr6_3:28443650-28443669 | None:intergenic | 35.0% |
| ACAAAATTCAAGTCATACCG+AGG | - | chr6_3:28443735-28443754 | Msa0946620:intron | 35.0% | |
| CTAGATTACAGTTACCAGAT+TGG | - | chr6_3:28443815-28443834 | Msa0946620:intron | 35.0% | |
| ! | TCTGGATTTTTGATCCAATC+TGG | + | chr6_3:28443832-28443851 | None:intergenic | 35.0% |
| !!! | GTTTTTTGCAAAGATGTGGA+AGG | - | chr6_3:28443855-28443874 | Msa0946620:intron | 35.0% |
| !!! | TTTTGTTTTTAAGGGAGCTC+TGG | + | chr6_3:28444600-28444619 | None:intergenic | 35.0% |
| !!! | CCGCTTCGTTTTTGTTTTTA+AGG | + | chr6_3:28444609-28444628 | None:intergenic | 35.0% |
| AAGGATCTCAACTCGTATAT+CGG | + | chr6_3:28444654-28444673 | None:intergenic | 35.0% | |
| GATAGGAGACAAAAAATAGG+TGG | - | chr6_3:28444714-28444733 | Msa0946620:intron | 35.0% | |
| ATAGATAGGATCTTAACTCC+CGG | - | chr6_3:28444834-28444853 | Msa0946620:intron | 35.0% | |
| AGAATCTCATACATGTATGC+CGG | + | chr6_3:28444856-28444875 | None:intergenic | 35.0% | |
| ! | TAAGACTTTGTTTGAGGGTT+CGG | - | chr6_3:28444990-28445009 | Msa0946620:intron | 35.0% |
| !!! | GGATTTAGTTTTCGGTTTGA+AGG | + | chr6_3:28445220-28445239 | None:intergenic | 35.0% |
| TAAAAGGGCAATAGTCACTT+TGG | - | chr6_3:28445392-28445411 | Msa0946620:intron | 35.0% | |
| AAGGAGAAGGAGGTAAAAAA+CGG | + | chr6_3:28445773-28445792 | None:intergenic | 35.0% | |
| TCATGATTCTTGAAACTCCA+CGG | - | chr6_3:28445969-28445988 | Msa0946620:intron | 35.0% | |
| TCCTATTGCATATTTGATGC+TGG | - | chr6_3:28445999-28446018 | Msa0946620:intron | 35.0% | |
| ACCAGCATCAAATATGCAAT+AGG | + | chr6_3:28446003-28446022 | None:intergenic | 35.0% | |
| !!! | GGTGCAAAATTTGTTGGTTT+TGG | - | chr6_3:28446157-28446176 | Msa0946620:intron | 35.0% |
| TGTTTGACCAGAAATGGTTA+TGG | - | chr6_3:28446394-28446413 | Msa0946620:intron | 35.0% | |
| CAGATTAGACAGATTAGAGT+TGG | - | chr6_3:28446513-28446532 | Msa0946620:intron | 35.0% | |
| TAAATTGAACCAACGTCCTA+CGG | + | chr6_3:28446930-28446949 | None:intergenic | 35.0% | |
| GAATGGTGGTAGATATTCAT+TGG | + | chr6_3:28446974-28446993 | None:intergenic | 35.0% | |
| TATGGAATCCAGATCATGAA+TGG | + | chr6_3:28446991-28447010 | None:intergenic | 35.0% | |
| CATGTTAAGGATTCCACAAA+TGG | + | chr6_3:28447198-28447217 | None:intergenic | 35.0% | |
| CACATACACACACGTATATA+AGG | + | chr6_3:28447486-28447505 | None:intergenic | 35.0% | |
| !! | AATAGCTTTTACGGTTTGGA+GGG | - | chr6_3:28447626-28447645 | Msa0946620:intron | 35.0% |
| GAGCATTACAAGAATGCATT+TGG | - | chr6_3:28447659-28447678 | Msa0946620:intron | 35.0% | |
| ! | ATGCATTTGGAACAAAGTGT+TGG | - | chr6_3:28447672-28447691 | Msa0946620:intron | 35.0% |
| CTTAGGACCAGTTTCATTAT+GGG | - | chr6_3:28447697-28447716 | Msa0946620:intron | 35.0% | |
| ACAAATGTAGAAGGAGATAG+TGG | - | chr6_3:28447758-28447777 | Msa0946620:intron | 35.0% | |
| GAGAACAGAATTCTCTTTCT+TGG | + | chr6_3:28447804-28447823 | None:intergenic | 35.0% | |
| ! | AGAAGGTGAAGATTTTATGG+AGG | - | chr6_3:28447940-28447959 | Msa0946620:CDS | 35.0% |
| TCTCAAGTATCAGCAATTGT+GGG | + | chr6_3:28448021-28448040 | None:intergenic | 35.0% | |
| TTCTCAAGTATCAGCAATTG+TGG | + | chr6_3:28448022-28448041 | None:intergenic | 35.0% | |
| ! | ATAGTTGAAAGTGTGAATGC+TGG | - | chr6_3:28448085-28448104 | Msa0946620:CDS | 35.0% |
| ! | TAGTTGAAAGTGTGAATGCT+GGG | - | chr6_3:28448086-28448105 | Msa0946620:CDS | 35.0% |
| !! | TTAAAAATTGGGGTGTCACT+TGG | - | chr6_3:28448175-28448194 | Msa0946620:CDS | 35.0% |
| !! | TAAAAATTGGGGTGTCACTT+GGG | - | chr6_3:28448176-28448195 | Msa0946620:CDS | 35.0% |
| ! | TATTGCAAAGGCTATTGGTT+TGG | - | chr6_3:28448258-28448277 | Msa0946620:intron | 35.0% |
| !! | ATTGGTTTGGTGATGACAAA+TGG | - | chr6_3:28448271-28448290 | Msa0946620:CDS | 35.0% |
| GACAAATGGAAAAGAAGTTG+AGG | - | chr6_3:28448285-28448304 | Msa0946620:CDS | 35.0% | |
| GGAAAGAAAGCTATACTTGT+TGG | - | chr6_3:28448343-28448362 | Msa0946620:CDS | 35.0% | |
| ! | AAGAAAGCTATACTTGTTGG+TGG | - | chr6_3:28448346-28448365 | Msa0946620:CDS | 35.0% |
| AGGGAAGGAAAATAACCTTC+AGG | + | chr6_3:28443282-28443301 | None:intergenic | 40.0% | |
| !! | GACTTGTTGATAAGAAGGGA+AGG | + | chr6_3:28443297-28443316 | None:intergenic | 40.0% |
| CATGATCCCAATGATTGACA+TGG | - | chr6_3:28443318-28443337 | Msa0946620:CDS | 40.0% | |
| GTCTTGCCATGTCAATCATT+GGG | + | chr6_3:28443327-28443346 | None:intergenic | 40.0% | |
| AGTCTTGCCATGTCAATCAT+TGG | + | chr6_3:28443328-28443347 | None:intergenic | 40.0% | |
| !! | GCAAGACTATTTGCTATGCA+TGG | - | chr6_3:28443340-28443359 | Msa0946620:CDS | 40.0% |
| !! | ACTATTTGCTATGCATGGTG+TGG | - | chr6_3:28443345-28443364 | Msa0946620:CDS | 40.0% |
| AATATTTGCGTTGCTTGTGG+TGG | + | chr6_3:28443386-28443405 | None:intergenic | 40.0% | |
| GTCGATGTTGCAGAAAAGTT+AGG | - | chr6_3:28443649-28443668 | Msa0946620:intron | 40.0% | |
| CAACGGGAGAAAATACTTGA+CGG | + | chr6_3:28443697-28443716 | None:intergenic | 40.0% | |
| ! | AAGTATTTTCTCCCGTTGTG+CGG | - | chr6_3:28443699-28443718 | Msa0946620:intron | 40.0% |
| AAATTCAAGTCATACCGAGG+TGG | - | chr6_3:28443738-28443757 | Msa0946620:intron | 40.0% | |
| CTAGTCATCTCCAACTTATC+CGG | + | chr6_3:28443799-28443818 | None:intergenic | 40.0% | |
| CTATTTGGCCAAACCAAACA+AGG | - | chr6_3:28443966-28443985 | Msa0946620:intron | 40.0% | |
| AAAAACAAAAACGAAGCGGG+TGG | - | chr6_3:28444610-28444629 | Msa0946620:intron | 40.0% | |
| AGGATCTCAACTCGTATATC+GGG | + | chr6_3:28444653-28444672 | None:intergenic | 40.0% | |
| AGGAGACAAAAAATAGGTGG+TGG | - | chr6_3:28444717-28444736 | Msa0946620:intron | 40.0% | |
| GAATCTCATACATGTATGCC+GGG | + | chr6_3:28444855-28444874 | None:intergenic | 40.0% | |
| GCATGTGACATGTATTCATG+AGG | - | chr6_3:28444915-28444934 | Msa0946620:intron | 40.0% | |
| TGTGACATGTATTCATGAGG+CGG | - | chr6_3:28444918-28444937 | Msa0946620:intron | 40.0% | |
| ! | TATGGGCGGGTAGAATTTTA+GGG | + | chr6_3:28445241-28445260 | None:intergenic | 40.0% |
| ! | TTATGGGCGGGTAGAATTTT+AGG | + | chr6_3:28445242-28445261 | None:intergenic | 40.0% |
| GAACAAAAGGAAGGAAGAAG+TGG | + | chr6_3:28445278-28445297 | None:intergenic | 40.0% | |
| AGGGATTGTGAACAAAAGGA+AGG | + | chr6_3:28445287-28445306 | None:intergenic | 40.0% | |
| TGAGAGGGATTGTGAACAAA+AGG | + | chr6_3:28445291-28445310 | None:intergenic | 40.0% | |
| ACCGAGCCTACAAAAAATTG+AGG | - | chr6_3:28445334-28445353 | Msa0946620:intron | 40.0% | |
| !!! | GCCTCAATTTTTTGTAGGCT+CGG | + | chr6_3:28445338-28445357 | None:intergenic | 40.0% |
| AGAAGGAGGTAAAAAACGGA+CGG | + | chr6_3:28445769-28445788 | None:intergenic | 40.0% | |
| TTGCTCTAACATCCCCAAAA+GGG | + | chr6_3:28445918-28445937 | None:intergenic | 40.0% | |
| AAGAATCATGAAGCATACCG+TGG | + | chr6_3:28445960-28445979 | None:intergenic | 40.0% | |
| ! | CTGGTTGGTGCAAAATTTGT+TGG | - | chr6_3:28446151-28446170 | Msa0946620:intron | 40.0% |
| ATGCTATGCTTCTGAATCGT+TGG | - | chr6_3:28446326-28446345 | Msa0946620:intron | 40.0% | |
| TCGGATTGTTTGACCAGAAA+TGG | - | chr6_3:28446388-28446407 | Msa0946620:intron | 40.0% | |
| CAAGTCTCCATAACCATTTC+TGG | + | chr6_3:28446404-28446423 | None:intergenic | 40.0% | |
| AGTTGGGTACCAACTTAGTT+GGG | - | chr6_3:28446530-28446549 | Msa0946620:intron | 40.0% | |
| TTTAATGTCGGACTCCACTT+TGG | - | chr6_3:28446711-28446730 | Msa0946620:intron | 40.0% | |
| TGACATAGCTTATGTGCCAT+TGG | + | chr6_3:28446855-28446874 | None:intergenic | 40.0% | |
| ATGGCACATAAGCTATGTCA+TGG | - | chr6_3:28446855-28446874 | Msa0946620:intron | 40.0% | |
| !! | GATACTTGATTAGTCTCCGT+AGG | - | chr6_3:28446911-28446930 | Msa0946620:intron | 40.0% |
| ATCTACCACCATTCATGATC+TGG | - | chr6_3:28446980-28446999 | Msa0946620:intron | 40.0% | |
| !! | CATGTTAACTTGTACCCTCA+GGG | + | chr6_3:28447223-28447242 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTACCCTC+AGG | + | chr6_3:28447224-28447243 | None:intergenic | 40.0% |
| GGTTCTATTTGGACCATTGT+CGG | + | chr6_3:28447301-28447320 | None:intergenic | 40.0% | |
| !! | CAATAGCTTTTACGGTTTGG+AGG | - | chr6_3:28447625-28447644 | Msa0946620:intron | 40.0% |
| !! | ATAGCTTTTACGGTTTGGAG+GGG | - | chr6_3:28447627-28447646 | Msa0946620:intron | 40.0% |
| GCTTAGGACCAGTTTCATTA+TGG | - | chr6_3:28447696-28447715 | Msa0946620:intron | 40.0% | |
| ! | TGGTTTGCCCATAATGAAAC+TGG | + | chr6_3:28447707-28447726 | None:intergenic | 40.0% |
| CTGCCTTATCAGAAACATCT+TGG | + | chr6_3:28447727-28447746 | None:intergenic | 40.0% | |
| GTTTCTGATAAGGCAGAAAG+AGG | - | chr6_3:28447731-28447750 | Msa0946620:intron | 40.0% | |
| AGAGGTGACACAAATGTAGA+AGG | - | chr6_3:28447749-28447768 | Msa0946620:intron | 40.0% | |
| AGGGTTATTTGATATGGGGT+TGG | - | chr6_3:28447993-28448012 | Msa0946620:CDS | 40.0% | |
| GGGTTATTTGATATGGGGTT+GGG | - | chr6_3:28447994-28448013 | Msa0946620:CDS | 40.0% | |
| CTCAAGTATCAGCAATTGTG+GGG | + | chr6_3:28448020-28448039 | None:intergenic | 40.0% | |
| CTTGAGAACAAAGCTATTGG+AGG | - | chr6_3:28448034-28448053 | Msa0946620:intron | 40.0% | |
| ! | GAGGAATTGTGACTAGTTGT+GGG | - | chr6_3:28448053-28448072 | Msa0946620:intron | 40.0% |
| AATAAAGGCCAAGTCACCAT+AGG | + | chr6_3:28448115-28448134 | None:intergenic | 40.0% | |
| !! | AAAAATTGGGGTGTCACTTG+GGG | - | chr6_3:28448177-28448196 | Msa0946620:CDS | 40.0% |
| ! | TGTCACTTGGGGTTAGAAAA+TGG | - | chr6_3:28448188-28448207 | Msa0946620:CDS | 40.0% |
| TAACGACATTGTGAAAAGGG+AGG | - | chr6_3:28448234-28448253 | Msa0946620:CDS | 40.0% | |
| GAAAAGGGAGGATATTGCAA+AGG | - | chr6_3:28448246-28448265 | Msa0946620:intron | 40.0% | |
| GAGGATATTGCAAAGGCTAT+TGG | - | chr6_3:28448253-28448272 | Msa0946620:intron | 40.0% | |
| !! | GCTAAAGCTTTGAGTGATGA+TGG | - | chr6_3:28448322-28448341 | Msa0946620:CDS | 40.0% |
| !! | CTCAAACATCAAAGGCACTA+TGG | - | chr6_3:28448415-28448434 | Msa0946620:CDS | 40.0% |
| !! | GTTATTGGCTTCAGCTTCGT+GGG | + | chr6_3:28443260-28443279 | None:intergenic | 45.0% |
| AGCTGAAGCCAATAACCTGA+AGG | - | chr6_3:28443264-28443283 | Msa0946620:CDS | 45.0% | |
| GTTGCTTGTGGTGGCAATTA+TGG | + | chr6_3:28443377-28443396 | None:intergenic | 45.0% | |
| GAGTTTCCAGCCAAAGAACT+TGG | - | chr6_3:28443466-28443485 | Msa0946620:intron | 45.0% | |
| !! | AACAGGAGTATTGGCATCCA+CGG | + | chr6_3:28443512-28443531 | None:intergenic | 45.0% |
| TGCCAATACTCCTGTTGACA+TGG | - | chr6_3:28443516-28443535 | Msa0946620:intron | 45.0% | |
| ! | TGCCATGTCAACAGGAGTAT+TGG | + | chr6_3:28443521-28443540 | None:intergenic | 45.0% |
| AATACTCCTGTTGACATGGC+AGG | - | chr6_3:28443520-28443539 | Msa0946620:intron | 45.0% | |
| ! | ATTTTGCCTGCCATGTCAAC+AGG | + | chr6_3:28443529-28443548 | None:intergenic | 45.0% |
| ATGGCAGGCAAAATCTACCA+GGG | - | chr6_3:28443535-28443554 | Msa0946620:intron | 45.0% | |
| ATCATAATCGGACTCCACCT+CGG | + | chr6_3:28443755-28443774 | None:intergenic | 45.0% | |
| GTGACATGTATTCATGAGGC+GGG | - | chr6_3:28444919-28444938 | Msa0946620:intron | 45.0% | |
| TGACATGTATTCATGAGGCG+GGG | - | chr6_3:28444920-28444939 | Msa0946620:intron | 45.0% | |
| !! | GTTTTCGGTTTGAAGGGGTT+TGG | + | chr6_3:28445213-28445232 | None:intergenic | 45.0% |
| TTTGAGGGGAGAGAATGAGA+GGG | + | chr6_3:28445306-28445325 | None:intergenic | 45.0% | |
| !! | TTTTGAGGGGAGAGAATGAG+AGG | + | chr6_3:28445307-28445326 | None:intergenic | 45.0% |
| ATGAGAGGGTAACATGCAGT+CGG | + | chr6_3:28445741-28445760 | None:intergenic | 45.0% | |
| ! | ACCACCTCTTTTCCCCTTTT+GGG | - | chr6_3:28445902-28445921 | Msa0946620:intron | 45.0% |
| TGCTCTAACATCCCCAAAAG+GGG | + | chr6_3:28445917-28445936 | None:intergenic | 45.0% | |
| GTTGCTCTAACATCCCCAAA+AGG | + | chr6_3:28445919-28445938 | None:intergenic | 45.0% | |
| AATCATGAAGCATACCGTGG+CGG | + | chr6_3:28445957-28445976 | None:intergenic | 45.0% | |
| !! | TTGATGCTGGTTTGACGAGT+TGG | - | chr6_3:28446012-28446031 | Msa0946620:intron | 45.0% |
| !!! | TGTTGGTTTTGGGTTCCGAA+AGG | - | chr6_3:28446168-28446187 | Msa0946620:intron | 45.0% |
| !! | ATGGTTATGGAGACTTGCTG+AGG | - | chr6_3:28446407-28446426 | Msa0946620:intron | 45.0% |
| !! | TTATGGAGACTTGCTGAGGT+GGG | - | chr6_3:28446411-28446430 | Msa0946620:intron | 45.0% |
| !! | GGGTGAATCCTTTTTCGTGT+TGG | - | chr6_3:28446452-28446471 | Msa0946620:intron | 45.0% |
| !!! | TCCTTTTTCGTGTTGGTGAC+CGG | - | chr6_3:28446459-28446478 | Msa0946620:intron | 45.0% |
| AACAAATCGGTGAGTGAACC+CGG | + | chr6_3:28446481-28446500 | None:intergenic | 45.0% | |
| GACACGACTGCTCAACAAAT+CGG | + | chr6_3:28446494-28446513 | None:intergenic | 45.0% | |
| GAGTTGGGTACCAACTTAGT+TGG | - | chr6_3:28446529-28446548 | Msa0946620:intron | 45.0% | |
| AGAGCAACTCCCAACTAAGT+TGG | + | chr6_3:28446542-28446561 | None:intergenic | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | + | chr6_3:28446808-28446827 | None:intergenic | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | + | chr6_3:28446809-28446828 | None:intergenic | 45.0% | |
| CACACATCCACACACATCAA+TGG | - | chr6_3:28446809-28446828 | Msa0946620:intron | 45.0% | |
| GATTTCCTCAATGCCACCAA+TGG | - | chr6_3:28446836-28446855 | Msa0946620:intron | 45.0% | |
| ! | CATAGCTTATGTGCCATTGG+TGG | + | chr6_3:28446852-28446871 | None:intergenic | 45.0% |
| GGAATCCAGATCATGAATGG+TGG | + | chr6_3:28446988-28447007 | None:intergenic | 45.0% | |
| AATCCTTAACATGTGCCCTG+AGG | - | chr6_3:28447205-28447224 | Msa0946620:intron | 45.0% | |
| ATCCTTAACATGTGCCCTGA+GGG | - | chr6_3:28447206-28447225 | Msa0946620:intron | 45.0% | |
| TTCACTGTCGAGCCCAATTT+AGG | - | chr6_3:28447257-28447276 | Msa0946620:intron | 45.0% | |
| !! | TAGCTTTTACGGTTTGGAGG+GGG | - | chr6_3:28447628-28447647 | Msa0946620:intron | 45.0% |
| !! | GGAACAAAGTGTTGGAGCTT+AGG | - | chr6_3:28447680-28447699 | Msa0946620:intron | 45.0% |
| ! | GGAGGAATTGTGACTAGTTG+TGG | - | chr6_3:28448052-28448071 | Msa0946620:intron | 45.0% |
| ! | GAATTGTGACTAGTTGTGGG+TGG | - | chr6_3:28448056-28448075 | Msa0946620:intron | 45.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | + | chr6_3:28444189-28444208 | None:intergenic | 5.0% |
| !! | AAAAATTACAAAAAAATAAA+AGG | - | chr6_3:28445376-28445395 | Msa0946620:intron | 5.0% |
| !! | AAAATTACAAAAAAATAAAA+GGG | - | chr6_3:28445377-28445396 | Msa0946620:intron | 5.0% |
| !! | GGTTATTGGCTTCAGCTTCG+TGG | + | chr6_3:28443261-28443280 | None:intergenic | 50.0% |
| ! | AGCCAAAGAACTTGGCCTTC+CGG | - | chr6_3:28443474-28443493 | Msa0946620:intron | 50.0% |
| AACCGGAAGGCCAAGTTCTT+TGG | + | chr6_3:28443479-28443498 | None:intergenic | 50.0% | |
| ! | AAAGAACTTGGCCTTCCGGT+TGG | - | chr6_3:28443478-28443497 | Msa0946620:intron | 50.0% |
| TCCACGGTTTCCATTCCAAC+CGG | + | chr6_3:28443496-28443515 | None:intergenic | 50.0% | |
| CATGGCAGGCAAAATCTACC+AGG | - | chr6_3:28443534-28443553 | Msa0946620:intron | 50.0% | |
| TGGCAGGCAAAATCTACCAG+GGG | - | chr6_3:28443536-28443555 | Msa0946620:intron | 50.0% | |
| GTTGTAGCATTGTGAACCCC+TGG | + | chr6_3:28443555-28443574 | None:intergenic | 50.0% | |
| ! | ATTTCCGATCGTTGGGTTGC+CGG | - | chr6_3:28443777-28443796 | Msa0946620:intron | 50.0% |
| TTATCCGGCAACCCAACGAT+CGG | + | chr6_3:28443784-28443803 | None:intergenic | 50.0% | |
| CATGTCACATGCGAAACACG+TGG | + | chr6_3:28444907-28444926 | None:intergenic | 50.0% | |
| GACATGTATTCATGAGGCGG+GGG | - | chr6_3:28444921-28444940 | Msa0946620:intron | 50.0% | |
| ! | GACTTTGTTTGAGGGTTCGG+AGG | - | chr6_3:28444993-28445012 | Msa0946620:intron | 50.0% |
| GAGAAGGAAGGAGATCGGTT+TGG | - | chr6_3:28445015-28445034 | Msa0946620:intron | 50.0% | |
| ! | TGAAGGGGTTTGGAGGGTTT+TGG | + | chr6_3:28445203-28445222 | None:intergenic | 50.0% |
| ! | TCGGTTTGAAGGGGTTTGGA+GGG | + | chr6_3:28445209-28445228 | None:intergenic | 50.0% |
| ! | TTCGGTTTGAAGGGGTTTGG+AGG | + | chr6_3:28445210-28445229 | None:intergenic | 50.0% |
| !! | CTCGGTTTGAGCGTTTTGAG+GGG | + | chr6_3:28445320-28445339 | None:intergenic | 50.0% |
| !! | GCTCGGTTTGAGCGTTTTGA+GGG | + | chr6_3:28445321-28445340 | None:intergenic | 50.0% |
| GGTCAGCGGTATCACAAGTT+TGG | + | chr6_3:28445696-28445715 | None:intergenic | 50.0% | |
| GGTGAGAGAGAAGAGAGCTA+GGG | + | chr6_3:28445717-28445736 | None:intergenic | 50.0% | |
| TGGTGAGAGAGAAGAGAGCT+AGG | + | chr6_3:28445718-28445737 | None:intergenic | 50.0% | |
| AACGGACGGTGAGAATGAGA+GGG | + | chr6_3:28445755-28445774 | None:intergenic | 50.0% | |
| AAACGGACGGTGAGAATGAG+AGG | + | chr6_3:28445756-28445775 | None:intergenic | 50.0% | |
| GAAACGGAAGAAGGAGAAGG+AGG | + | chr6_3:28445783-28445802 | None:intergenic | 50.0% | |
| AGGGAAACGGAAGAAGGAGA+AGG | + | chr6_3:28445786-28445805 | None:intergenic | 50.0% | |
| GTCTAGAGGGAAACGGAAGA+AGG | + | chr6_3:28445792-28445811 | None:intergenic | 50.0% | |
| TGTCTACGCGGATGTCTAGA+GGG | + | chr6_3:28445805-28445824 | None:intergenic | 50.0% | |
| ATGTCTACGCGGATGTCTAG+AGG | + | chr6_3:28445806-28445825 | None:intergenic | 50.0% | |
| !! | TACATGGTGGCGGTTGTGTT+TGG | + | chr6_3:28445838-28445857 | None:intergenic | 50.0% |
| ! | CACCACCTCTTTTCCCCTTT+TGG | - | chr6_3:28445901-28445920 | Msa0946620:intron | 50.0% |
| ! | CCACCTCTTTTCCCCTTTTG+GGG | - | chr6_3:28445903-28445922 | Msa0946620:intron | 50.0% |
| CATCCCCAAAAGGGGAAAAG+AGG | + | chr6_3:28445909-28445928 | None:intergenic | 50.0% | |
| !! | GCTGGTTTGACGAGTTGGTT+TGG | - | chr6_3:28446017-28446036 | Msa0946620:intron | 50.0% |
| !!! | TGGTTTTGGGTTCCGAAAGG+TGG | - | chr6_3:28446171-28446190 | Msa0946620:intron | 50.0% |
| !! | GTTATGGAGACTTGCTGAGG+TGG | - | chr6_3:28446410-28446429 | Msa0946620:intron | 50.0% |
| !! | TATGGAGACTTGCTGAGGTG+GGG | - | chr6_3:28446412-28446431 | Msa0946620:intron | 50.0% |
| !!! | CCTTTTTCGTGTTGGTGACC+GGG | - | chr6_3:28446460-28446479 | Msa0946620:intron | 50.0% |
| CACAAGCTATGGCACCAAAG+TGG | + | chr6_3:28446728-28446747 | None:intergenic | 50.0% | |
| ! | TGCCATAGCTTGTGTGCCAT+TGG | - | chr6_3:28446734-28446753 | Msa0946620:intron | 50.0% |
| CACCAATGGCACACAAGCTA+TGG | + | chr6_3:28446739-28446758 | None:intergenic | 50.0% | |
| GATGCAAGCTATGGCACCAA+TGG | + | chr6_3:28446753-28446772 | None:intergenic | 50.0% | |
| ! | TGTGGTGGAGATGCAAGCTA+TGG | + | chr6_3:28446762-28446781 | None:intergenic | 50.0% |
| TGTGATGTGTGTGTGTGTGG+TGG | + | chr6_3:28446777-28446796 | None:intergenic | 50.0% | |
| GTGTGTGATGTGTGTGTGTG+TGG | + | chr6_3:28446780-28446799 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | + | chr6_3:28446807-28446826 | None:intergenic | 50.0% | |
| ATCCACACACATCAATGGCC+AGG | - | chr6_3:28446814-28446833 | Msa0946620:intron | 50.0% | |
| ATCCTGGCCATTGATGTGTG+TGG | + | chr6_3:28446819-28446838 | None:intergenic | 50.0% | |
| ! | TGGTGGCATTGAGGAAATCC+TGG | + | chr6_3:28446835-28446854 | None:intergenic | 50.0% |
| ! | ATGTGCCATTGGTGGCATTG+AGG | + | chr6_3:28446844-28446863 | None:intergenic | 50.0% |
| !! | GATTAGTCTCCGTAGGACGT+TGG | - | chr6_3:28446918-28446937 | Msa0946620:intron | 50.0% |
| TACCCTCAGGGCACATGTTA+AGG | + | chr6_3:28447211-28447230 | None:intergenic | 50.0% | |
| GGGGATGGTACGCCTAAATT+GGG | + | chr6_3:28447272-28447291 | None:intergenic | 50.0% | |
| TGGGGATGGTACGCCTAAAT+TGG | + | chr6_3:28447273-28447292 | None:intergenic | 50.0% | |
| ! | TGGACCATTGTCGGTTGTGT+GGG | + | chr6_3:28447292-28447311 | None:intergenic | 50.0% |
| ! | TTGGACCATTGTCGGTTGTG+TGG | + | chr6_3:28447293-28447312 | None:intergenic | 50.0% |
| TGTGAATGCTGGGTTGCCTA+TGG | - | chr6_3:28448096-28448115 | Msa0946620:CDS | 50.0% | |
| GGAAGGCCAAGTTCTTTGGC+TGG | + | chr6_3:28443475-28443494 | None:intergenic | 55.0% | |
| ! | ACTTGGCCTTCCGGTTGGAA+TGG | - | chr6_3:28443483-28443502 | Msa0946620:intron | 55.0% |
| CGGTTTCCATTCCAACCGGA+AGG | + | chr6_3:28443492-28443511 | None:intergenic | 55.0% | |
| TCCGGTTGGAATGGAAACCG+TGG | - | chr6_3:28443492-28443511 | Msa0946620:intron | 55.0% | |
| AAACCAGAGCTCCGCACAAC+GGG | + | chr6_3:28443713-28443732 | None:intergenic | 55.0% | |
| CAAACCAGAGCTCCGCACAA+CGG | + | chr6_3:28443714-28443733 | None:intergenic | 55.0% | |
| ! | CGTTGGGTTGCCGGATAAGT+TGG | - | chr6_3:28443786-28443805 | Msa0946620:intron | 55.0% |
| GTTTGAGGGTTCGGAGGAGA+AGG | - | chr6_3:28444999-28445018 | Msa0946620:intron | 55.0% | |
| CGGAGGAGAAGGAAGGAGAT+CGG | - | chr6_3:28445010-28445029 | Msa0946620:intron | 55.0% | |
| !! | GGCTCGGTTTGAGCGTTTTG+AGG | + | chr6_3:28445322-28445341 | None:intergenic | 55.0% |
| GAGAAGAGAGCTAGGGTCAG+CGG | + | chr6_3:28445710-28445729 | None:intergenic | 55.0% | |
| AGAGGGTAACATGCAGTCGG+TGG | + | chr6_3:28445738-28445757 | None:intergenic | 55.0% | |
| CGCGGATGTCTAGAGGGAAA+CGG | + | chr6_3:28445799-28445818 | None:intergenic | 55.0% | |
| GCGGTTGTGTTTGGATGTGG+CGG | + | chr6_3:28445829-28445848 | None:intergenic | 55.0% | |
| GTGGCGGTTGTGTTTGGATG+TGG | + | chr6_3:28445832-28445851 | None:intergenic | 55.0% | |
| CACCATGTAGACATCCGCGT+CGG | - | chr6_3:28445849-28445868 | Msa0946620:intron | 55.0% | |
| CCCCAAAAGGGGAAAAGAGG+TGG | + | chr6_3:28445906-28445925 | None:intergenic | 55.0% | |
| GGGGATGTTAGAGCAACCGT+CGG | - | chr6_3:28445922-28445941 | Msa0946620:intron | 55.0% | |
| CGTCACCTCCAAGAGTAAGG+CGG | + | chr6_3:28446058-28446077 | None:intergenic | 55.0% | |
| CGCCTTACTCTTGGAGGTGA+CGG | - | chr6_3:28446056-28446075 | Msa0946620:intron | 55.0% | |
| CACCGTCACCTCCAAGAGTA+AGG | + | chr6_3:28446061-28446080 | None:intergenic | 55.0% | |
| ! | CTTACTCTTGGAGGTGACGG+TGG | - | chr6_3:28446059-28446078 | Msa0946620:intron | 55.0% |
| TGAGCCAACCGAAACTCACG+CGG | + | chr6_3:28446200-28446219 | None:intergenic | 55.0% | |
| ! | CGTGAGTTTCGGTTGGCTCA+CGG | - | chr6_3:28446200-28446219 | Msa0946620:intron | 55.0% |
| ! | AGTTTCGGTTGGCTCACGGT+TGG | - | chr6_3:28446204-28446223 | Msa0946620:intron | 55.0% |
| ! | GTTTCGGTTGGCTCACGGTT+GGG | - | chr6_3:28446205-28446224 | Msa0946620:intron | 55.0% |
| ! | TTTCGGTTGGCTCACGGTTG+GGG | - | chr6_3:28446206-28446225 | Msa0946620:intron | 55.0% |
| GTACAACGACGAGCTAGGAG+CGG | + | chr6_3:28446240-28446259 | None:intergenic | 55.0% | |
| CCTAGCTCGTCGTTGTACGT+CGG | - | chr6_3:28446242-28446261 | Msa0946620:intron | 55.0% | |
| CCAAGTAGAGGGACGCAAAG+AGG | + | chr6_3:28446268-28446287 | None:intergenic | 55.0% | |
| CCTCTTTGCGTCCCTCTACT+TGG | - | chr6_3:28446265-28446284 | Msa0946620:intron | 55.0% | |
| CCAGCAAGCAGCCAAGTAGA+GGG | + | chr6_3:28446279-28446298 | None:intergenic | 55.0% | |
| ACCAGCAAGCAGCCAAGTAG+AGG | + | chr6_3:28446280-28446299 | None:intergenic | 55.0% | |
| CCCGGTCACCAACACGAAAA+AGG | + | chr6_3:28446463-28446482 | None:intergenic | 55.0% | |
| ! | CATTGTCGGTTGTGTGGGGA+TGG | + | chr6_3:28447287-28447306 | None:intergenic | 55.0% |
| CATCCCCACACAACCGACAA+TGG | - | chr6_3:28447285-28447304 | Msa0946620:intron | 55.0% | |
| ! | GGACCATTGTCGGTTGTGTG+GGG | + | chr6_3:28447291-28447310 | None:intergenic | 55.0% |
| CTGGGTTGCCTATGGTGACT+TGG | - | chr6_3:28448104-28448123 | Msa0946620:CDS | 55.0% | |
| CATGTCACATGCGGCACACG+TGG | + | chr6_3:28444964-28444983 | None:intergenic | 60.0% | |
| GAGGGTTCGGAGGAGAAGGA+AGG | - | chr6_3:28445003-28445022 | Msa0946620:intron | 60.0% | |
| !! | GGATGTGGCGGATGTCTACG+CGG | + | chr6_3:28445817-28445836 | None:intergenic | 60.0% |
| CGCGGATGTCTACATGGTGG+CGG | + | chr6_3:28445848-28445867 | None:intergenic | 60.0% | |
| CGACGCGGATGTCTACATGG+TGG | + | chr6_3:28445851-28445870 | None:intergenic | 60.0% | |
| CACCGACGCGGATGTCTACA+TGG | + | chr6_3:28445854-28445873 | None:intergenic | 60.0% | |
| CATGTAGACATCCGCGTCGG+TGG | - | chr6_3:28445852-28445871 | Msa0946620:intron | 60.0% | |
| !! | TGCAATAGGAGCGCTAGCCG+TGG | + | chr6_3:28445989-28446008 | None:intergenic | 60.0% |
| AGTCGTCGCCGCCTTACTCT+TGG | - | chr6_3:28446047-28446066 | Msa0946620:intron | 60.0% | |
| GAGCCAACCGAAACTCACGC+GGG | + | chr6_3:28446199-28446218 | None:intergenic | 60.0% | |
| CCGACGTACAACGACGAGCT+AGG | + | chr6_3:28446245-28446264 | None:intergenic | 60.0% | |
| CCCTCTACTTGGCTGCTTGC+TGG | - | chr6_3:28446276-28446295 | Msa0946620:intron | 60.0% | |
| ! | TGAGGTGGGGTCGACTCAGT+GGG | - | chr6_3:28446425-28446444 | Msa0946620:intron | 60.0% |
| ! | CGGTTTGGAGGGGGCTTATG+AGG | - | chr6_3:28447637-28447656 | Msa0946620:intron | 60.0% |
| TCTCCCGTTGTGCGGAGCTC+TGG | - | chr6_3:28443707-28443726 | Msa0946620:intron | 65.0% | |
| CGTCGCCGCCTTACTCTTGG+AGG | - | chr6_3:28446050-28446069 | Msa0946620:intron | 65.0% | |
| CAACCAGAACCCACCGCAGG+AGG | + | chr6_3:28446138-28446157 | None:intergenic | 65.0% | |
| ! | CTCCTGCGGTGGGTTCTGGT+TGG | - | chr6_3:28446136-28446155 | Msa0946620:intron | 65.0% |
| CACCAACCAGAACCCACCGC+AGG | + | chr6_3:28446141-28446160 | None:intergenic | 65.0% | |
| CTCACGCGGGAGCCACCTTT+CGG | + | chr6_3:28446186-28446205 | None:intergenic | 65.0% | |
| GGTGGCTCCCGCGTGAGTTT+CGG | - | chr6_3:28446189-28446208 | Msa0946620:intron | 65.0% | |
| GCTCCCGCGTGAGTTTCGGT+TGG | - | chr6_3:28446193-28446212 | Msa0946620:intron | 65.0% | |
| ! | CTGAGGTGGGGTCGACTCAG+TGG | - | chr6_3:28446424-28446443 | Msa0946620:intron | 65.0% |
| ! | GGGTCGACTCAGTGGGTGGT+GGG | - | chr6_3:28446432-28446451 | Msa0946620:intron | 65.0% |
| CGTCGTTCGCACCACCGACG+CGG | + | chr6_3:28445866-28445885 | None:intergenic | 70.0% | |
| ! | CGCGTCGGTGGTGCGAACGA+CGG | - | chr6_3:28445864-28445883 | Msa0946620:intron | 70.0% |
| GTGGCGGTTGCACACGCCGA+CGG | + | chr6_3:28445941-28445960 | None:intergenic | 70.0% | |
| GTCGGCGTGTGCAACCGCCA+CGG | - | chr6_3:28445940-28445959 | Msa0946620:intron | 70.0% | |
| GTCGGAGCCACCTCCTCCTG+CGG | - | chr6_3:28446122-28446141 | Msa0946620:intron | 70.0% | |
| GAGCCACCTCCTCCTGCGGT+GGG | - | chr6_3:28446126-28446145 | Msa0946620:intron | 70.0% | |
| GAACCCACCGCAGGAGGAGG+TGG | + | chr6_3:28446132-28446151 | None:intergenic | 70.0% | |
| CCAGAACCCACCGCAGGAGG+AGG | + | chr6_3:28446135-28446154 | None:intergenic | 70.0% | |
| ! | CCTCCTCCTGCGGTGGGTTC+TGG | - | chr6_3:28446132-28446151 | Msa0946620:intron | 70.0% |
| ! | GGTGGGGTCGACTCAGTGGG+TGG | - | chr6_3:28446428-28446447 | Msa0946620:intron | 70.0% |
| ! | GGGGTCGACTCAGTGGGTGG+TGG | - | chr6_3:28446431-28446450 | Msa0946620:intron | 70.0% |
| GGAGCCACCTCCTCCTGCGG+TGG | - | chr6_3:28446125-28446144 | Msa0946620:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 28443250 | 28448444 | 28443250 | ID=Msa0946620;Name=Msa0946620 |
| chr6_3 | mRNA | 28443250 | 28448444 | 28443250 | ID=Msa0946620-mRNA-1;Parent=Msa0946620;Name=Msa0946620-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0|0.25|4|0|247 |
| chr6_3 | exon | 28448270 | 28448444 | 28448270 | ID=Msa0946620-mRNA-1:exon:7609;Parent=Msa0946620-mRNA-1 |
| chr6_3 | exon | 28448069 | 28448254 | 28448069 | ID=Msa0946620-mRNA-1:exon:7608;Parent=Msa0946620-mRNA-1 |
| chr6_3 | exon | 28447818 | 28448023 | 28447818 | ID=Msa0946620-mRNA-1:exon:7607;Parent=Msa0946620-mRNA-1 |
| chr6_3 | exon | 28443250 | 28443426 | 28443250 | ID=Msa0946620-mRNA-1:exon:7606;Parent=Msa0946620-mRNA-1 |
| chr6_3 | CDS | 28448270 | 28448444 | 28448270 | ID=Msa0946620-mRNA-1:cds;Parent=Msa0946620-mRNA-1 |
| chr6_3 | CDS | 28448069 | 28448254 | 28448069 | ID=Msa0946620-mRNA-1:cds;Parent=Msa0946620-mRNA-1 |
| chr6_3 | CDS | 28447818 | 28448023 | 28447818 | ID=Msa0946620-mRNA-1:cds;Parent=Msa0946620-mRNA-1 |
| chr6_3 | CDS | 28443250 | 28443426 | 28443250 | ID=Msa0946620-mRNA-1:cds;Parent=Msa0946620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
