Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947300 | sp|Q0IGK1|MBD4L_ARATH | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 3.86e-59 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947300 | A0A072TJT5 | 74.164 | 329 | 28 | 7 | 1 | 319 | 1 | 282 | 4.01e-156 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0438210 | Msa0947300 | 0.856313 | 3.500987e-62 | -8.615850e-47 |
| Msa0947300 | Msa1394740 | 0.860726 | 1.689821e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947300 | MtrunA17_Chr5g0422001 | 74.164 | 329 | 28 | 7 | 1 | 319 | 1 | 282 | 7.73e-160 | 447 |
| Msa0947300 | MtrunA17_Chr5g0421951 | 66.667 | 321 | 54 | 6 | 1 | 313 | 1 | 276 | 6.10e-137 | 389 |
| Msa0947300 | MtrunA17_Chr6g0461801 | 59.389 | 229 | 28 | 7 | 1 | 216 | 1 | 177 | 5.05e-70 | 216 |
| Msa0947300 | MtrunA17_Chr6g0465351 | 78.125 | 64 | 14 | 0 | 217 | 280 | 4 | 67 | 1.24e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947300 | AT3G07930.4 | 60.403 | 149 | 54 | 2 | 164 | 312 | 180 | 323 | 2.61e-61 | 198 |
| Msa0947300 | AT3G07930.3 | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 3.93e-60 | 199 |
| Msa0947300 | AT3G07930.2 | 64.151 | 53 | 14 | 2 | 164 | 216 | 296 | 343 | 1.63e-14 | 73.9 |
| Msa0947300 | AT3G07930.1 | 59.259 | 54 | 17 | 2 | 164 | 217 | 296 | 344 | 3.73e-13 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACACCGGATAATAAT+TGG | 0.173506 | 6_3:+29888594 | Msa0947300:CDS |
| ACCTCTTGTATTTCCTCTTT+TGG | 0.193190 | 6_3:-29890532 | None:intergenic |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 6_3:-29888278 | None:intergenic |
| CCGCAGCAGTCGACTATTAA+AGG | 0.275703 | 6_3:-29891465 | None:intergenic |
| CGAGAGCCATTGAAAATCTT+AGG | 0.283054 | 6_3:-29888482 | None:intergenic |
| CATTGGTATCTCTAATATTA+TGG | 0.291425 | 6_3:+29891433 | Msa0947300:three_prime_UTR |
| ATCACAAGTTGAACGAATAT+TGG | 0.295409 | 6_3:+29891347 | Msa0947300:CDS |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 6_3:+29888408 | Msa0947300:CDS |
| TCTTCAACTTCCTGAAAATA+AGG | 0.315866 | 6_3:-29888335 | None:intergenic |
| GCAACATTTGAAATACATAT+TGG | 0.317824 | 6_3:-29891545 | None:intergenic |
| TGCATGCAAGTTTCTGCGTT+TGG | 0.349543 | 6_3:-29890505 | None:intergenic |
| GAATTTCCTTCACAACATAA+AGG | 0.376082 | 6_3:+29891369 | Msa0947300:CDS |
| TAAGGAGACACGACCCTCTC+TGG | 0.408073 | 6_3:-29888260 | None:intergenic |
| TTCCCTTGTACGCATACTTA+CGG | 0.426587 | 6_3:-29888139 | None:intergenic |
| CAAGAGGTAATTAAGACATT+AGG | 0.427686 | 6_3:+29890547 | Msa0947300:CDS |
| CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | 6_3:-29888554 | None:intergenic |
| TAAGGAGACACGACCCTTTG+TGG | 0.442932 | 6_3:-29888317 | None:intergenic |
| TTCTTAAGGCTGATAGATGT+AGG | 0.446534 | 6_3:+29888558 | Msa0947300:CDS |
| CCCAGTGTATTTATCTACAT+TGG | 0.465370 | 6_3:+29891416 | Msa0947300:three_prime_UTR |
| GAAAACACCGGATAATAATT+GGG | 0.469834 | 6_3:+29888595 | Msa0947300:CDS |
| GAACCGCACTAAAGGTGAAC+AGG | 0.481639 | 6_3:+29888715 | Msa0947300:CDS |
| TTTCCGTAAGTATGCGTACA+AGG | 0.482284 | 6_3:+29888136 | Msa0947300:CDS |
| CAAAGCTCTGACATATATGT+TGG | 0.482644 | 6_3:+29891579 | Msa0947300:three_prime_UTR |
| CATTAGGTCTTCAAGTGAAA+AGG | 0.482808 | 6_3:+29890563 | Msa0947300:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 6_3:+29888289 | Msa0947300:CDS |
| AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | 6_3:+29888186 | Msa0947300:CDS |
| ATAGTCGACTGCTGCGGTGA+AGG | 0.491091 | 6_3:+29891471 | Msa0947300:three_prime_UTR |
| TTTCTGTCACACAGGGAGAA+TGG | 0.498380 | 6_3:+29888073 | None:intergenic |
| CACGGAAATGATACTCTTGA+AGG | 0.503438 | 6_3:-29888658 | None:intergenic |
| TAGAAAGAGTGTTGTTGAGG+TGG | 0.504482 | 6_3:+29888169 | Msa0947300:CDS |
| GTGAATACTTAGCCGGGACT+TGG | 0.505430 | 6_3:+29890611 | Msa0947300:CDS |
| CTTTCTCGTGAATACTTAGC+CGG | 0.505784 | 6_3:+29890604 | Msa0947300:CDS |
| TAGTCGACTGCTGCGGTGAA+GGG | 0.507639 | 6_3:+29891472 | Msa0947300:three_prime_UTR |
| CTGCGGTGAAGGGAAAACTA+TGG | 0.509947 | 6_3:+29891482 | Msa0947300:three_prime_UTR |
| TTGCATGCAAGTACCAAAAG+AGG | 0.526068 | 6_3:+29890519 | Msa0947300:CDS |
| GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | 6_3:+29888190 | Msa0947300:CDS |
| GATGTAGGGAAGCTTACATA+AGG | 0.526950 | 6_3:+29888573 | Msa0947300:CDS |
| TCTTAAGGCTGATAGATGTA+GGG | 0.528906 | 6_3:+29888559 | Msa0947300:CDS |
| GAAAATCGAAGAGTGTAAAG+TGG | 0.533714 | 6_3:+29888232 | Msa0947300:CDS |
| ATGCTACTGAACCGCACTAA+AGG | 0.536386 | 6_3:+29888707 | Msa0947300:CDS |
| ACCAATGTAGATAAATACAC+TGG | 0.539298 | 6_3:-29891417 | None:intergenic |
| ATGTATCCTTTATGTTGTGA+AGG | 0.539485 | 6_3:-29891375 | None:intergenic |
| GGAGGCACCCAATTATTATC+CGG | 0.546937 | 6_3:-29888602 | None:intergenic |
| AGCTCTGACATATATGTTGG+AGG | 0.548205 | 6_3:+29891582 | Msa0947300:three_prime_UTR |
| CATATAACAATCACCCTCCA+TGG | 0.550910 | 6_3:-29888683 | None:intergenic |
| AGTATCATTTCCGTGATCCA+TGG | 0.552016 | 6_3:+29888666 | Msa0947300:CDS |
| ATGTATTTCAAATGTTGCAG+TGG | 0.558641 | 6_3:+29891550 | Msa0947300:three_prime_UTR |
| CGGCTAAGTATTCACGAGAA+AGG | 0.563641 | 6_3:-29890603 | None:intergenic |
| TTTCTCGTGAATACTTAGCC+GGG | 0.570744 | 6_3:+29890605 | Msa0947300:CDS |
| TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | 6_3:+29888304 | Msa0947300:CDS |
| TCTTAGAAAGAGTGTTGTTG+AGG | 0.587653 | 6_3:+29888166 | Msa0947300:CDS |
| GAACGAGACACGACCCTCTG+TGG | 0.587983 | 6_3:-29888374 | None:intergenic |
| CAATCACCCTCCATGGATCA+CGG | 0.603020 | 6_3:-29888676 | None:intergenic |
| CCTTTAATAGTCGACTGCTG+CGG | 0.603086 | 6_3:+29891465 | Msa0947300:three_prime_UTR |
| TCGTTCAACTTGTGATCATG+AGG | 0.604180 | 6_3:-29891340 | None:intergenic |
| GACCGAAAGTTGAAAAGCCT+AGG | 0.611563 | 6_3:+29888510 | Msa0947300:CDS |
| TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | 6_3:+29888247 | Msa0947300:CDS |
| AGTCACATAAGTCCAAGTCC+CGG | 0.623457 | 6_3:-29890623 | None:intergenic |
| GAGCCATTGAAAATCTTAGG+AGG | 0.626770 | 6_3:-29888479 | None:intergenic |
| GGGAAAACTATGGTGAGGCA+TGG | 0.628164 | 6_3:+29891492 | Msa0947300:three_prime_UTR |
| GGAAGTTGAAGAGTGTAATG+TGG | 0.635335 | 6_3:+29888346 | Msa0947300:CDS |
| ACCAAAAGAGGAAATACAAG+AGG | 0.636548 | 6_3:+29890531 | Msa0947300:CDS |
| GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | 6_3:+29888246 | Msa0947300:CDS |
| GTACCTGTTCACCTTTAGTG+CGG | 0.640154 | 6_3:-29888718 | None:intergenic |
| TAATGTGGAGCATCCACAGA+GGG | 0.640527 | 6_3:+29888361 | Msa0947300:CDS |
| CCAATGTAGATAAATACACT+GGG | 0.640771 | 6_3:-29891416 | None:intergenic |
| ATCATTTCCGTGATCCATGG+AGG | 0.642513 | 6_3:+29888669 | Msa0947300:CDS |
| TTCCGTAAGTATGCGTACAA+GGG | 0.643079 | 6_3:+29888137 | Msa0947300:CDS |
| TTGTACGCATACTTACGGAA+AGG | 0.645470 | 6_3:-29888134 | None:intergenic |
| TCATTTCCGTGATCCATGGA+GGG | 0.656462 | 6_3:+29888670 | Msa0947300:CDS |
| AGCTTACATAAGGAAAACAC+CGG | 0.664968 | 6_3:+29888583 | Msa0947300:CDS |
| GTGAAGGGAAAACTATGGTG+AGG | 0.669978 | 6_3:+29891487 | Msa0947300:three_prime_UTR |
| GTGACTGAACTGCACAGTGT+TGG | 0.673794 | 6_3:+29890640 | Msa0947300:CDS |
| ACGAGAGGAGGTGTAGAACG+TGG | 0.676331 | 6_3:-29888623 | None:intergenic |
| GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | 6_3:+29888303 | Msa0947300:CDS |
| AGAGGAGGTGTAGAACGTGG+AGG | 0.751771 | 6_3:-29888620 | None:intergenic |
| GTAATGTGGAGCATCCACAG+AGG | 0.810807 | 6_3:+29888360 | Msa0947300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATAAAATATTTA+AGG | - | chr6_3:29891087-29891106 | None:intergenic | 0.0% |
| !! | ATAATAAAAGAATATACTAA+AGG | + | chr6_3:29889839-29889858 | Msa0947300:intron | 10.0% |
| !! | TAATAAAAGAATATACTAAA+GGG | + | chr6_3:29889840-29889859 | Msa0947300:intron | 10.0% |
| !! | CAATTTATTATAATAATTTG+AGG | - | chr6_3:29890842-29890861 | None:intergenic | 10.0% |
| !! | AGAAATTATGATTAAGAATT+TGG | + | chr6_3:29888964-29888983 | Msa0947300:intron | 15.0% |
| !! | TAGTAATTTAGAAATAAAGA+AGG | + | chr6_3:29889331-29889350 | Msa0947300:intron | 15.0% |
| !! | TGTTCAATATATAACATTAT+TGG | + | chr6_3:29889561-29889580 | Msa0947300:intron | 15.0% |
| !! | TCAAAATTGGATTAATAATT+AGG | - | chr6_3:29889751-29889770 | None:intergenic | 15.0% |
| !! | AATAAAAGAATATACTAAAG+GGG | + | chr6_3:29889841-29889860 | Msa0947300:intron | 15.0% |
| !! | AAAAAAAAAATCATGTGAAA+AGG | - | chr6_3:29890144-29890163 | None:intergenic | 15.0% |
| !! | ATTTGAGAATATGTTAAATT+AGG | + | chr6_3:29890302-29890321 | Msa0947300:intron | 15.0% |
| !!! | ATTTTTAACATGTTACTTTT+AGG | + | chr6_3:29890707-29890726 | Msa0947300:intron | 15.0% |
| !!! | TATTTGACATAAATCTTTTA+AGG | - | chr6_3:29891119-29891138 | None:intergenic | 15.0% |
| !!! | TTCTTTAATTTTTATAATCG+AGG | + | chr6_3:29891160-29891179 | Msa0947300:intron | 15.0% |
| !!! | TCTTTAATTTTTATAATCGA+GGG | + | chr6_3:29891161-29891180 | Msa0947300:intron | 15.0% |
| !!! | AAAAACTAAACCTTTTCTTA+AGG | + | chr6_3:29888544-29888563 | Msa0947300:CDS | 20.0% |
| !!! | ATTTGAAATTTATCTTCTTG+AGG | + | chr6_3:29888933-29888952 | Msa0947300:intron | 20.0% |
| !!! | AGTCTTTAAAAAAGAGAAAA+AGG | - | chr6_3:29889167-29889186 | None:intergenic | 20.0% |
| !!! | AGAATTAATATTTTACATGC+TGG | - | chr6_3:29889307-29889326 | None:intergenic | 20.0% |
| !! | ATAAAGAAGGATAATGTATT+AGG | + | chr6_3:29889344-29889363 | Msa0947300:intron | 20.0% |
| !! | ATAATGTTAATGTAGTTACA+AGG | + | chr6_3:29889686-29889705 | Msa0947300:intron | 20.0% |
| !! | AATTGGATTAATAATTAGGA+GGG | - | chr6_3:29889747-29889766 | None:intergenic | 20.0% |
| !! | AAATTGGATTAATAATTAGG+AGG | - | chr6_3:29889748-29889767 | None:intergenic | 20.0% |
| !! | TCACTATAAAAAAGAACTAA+TGG | - | chr6_3:29890015-29890034 | None:intergenic | 20.0% |
| !! | AATATGTTAAATTAGGAAAC+TGG | + | chr6_3:29890309-29890328 | Msa0947300:intron | 20.0% |
| !!! | TTTAGGCTAAATTACAATTT+TGG | + | chr6_3:29890724-29890743 | Msa0947300:intron | 20.0% |
| !! | AAATCACTAAAAAAAACTAG+AGG | - | chr6_3:29890786-29890805 | None:intergenic | 20.0% |
| !! | TTTATGTCAAATACAACTAA+TGG | + | chr6_3:29891126-29891145 | Msa0947300:intron | 20.0% |
| !!! | TACAATGTTATATGCAATTT+TGG | - | chr6_3:29891216-29891235 | None:intergenic | 20.0% |
| !! | TTCCTTACATTTATTGATAT+CGG | + | chr6_3:29891245-29891264 | Msa0947300:intron | 20.0% |
| !! | TCTTCAACTTTCTGAAAATA+AGG | - | chr6_3:29888281-29888300 | None:intergenic | 25.0% |
| !! | TTGAAGATTTAGAACAGTTT+AGG | + | chr6_3:29888408-29888427 | Msa0947300:CDS | 25.0% |
| !!! | GTTTTTCTTTTTGATTTCCT+AGG | - | chr6_3:29888530-29888549 | None:intergenic | 25.0% |
| ! | AACAGTATCATAATAAAGTC+AGG | - | chr6_3:29888788-29888807 | None:intergenic | 25.0% |
| ! | TGAATTCAAAATGACTCAAA+AGG | - | chr6_3:29889114-29889133 | None:intergenic | 25.0% |
| !! | TTTTCTACAGAACAACAAAA+AGG | - | chr6_3:29889280-29889299 | None:intergenic | 25.0% |
| !! | ATGGAACTTTTTGTAATAAC+TGG | + | chr6_3:29889511-29889530 | Msa0947300:intron | 25.0% |
| ! | TGGTTATGTATTCATGTAAT+AGG | - | chr6_3:29889794-29889813 | None:intergenic | 25.0% |
| ! | ATATAGAAGCAACATGAAAA+TGG | - | chr6_3:29889946-29889965 | None:intergenic | 25.0% |
| !!! | ATTTAACCATCGACTTTTTA+GGG | + | chr6_3:29890087-29890106 | Msa0947300:intron | 25.0% |
| ! | ACAAAATATCCCTGTTAAAA+GGG | - | chr6_3:29890186-29890205 | None:intergenic | 25.0% |
| ! | AACAAAATATCCCTGTTAAA+AGG | - | chr6_3:29890187-29890206 | None:intergenic | 25.0% |
| ! | TAAGAAGCTAACTCATAATA+GGG | - | chr6_3:29890434-29890453 | None:intergenic | 25.0% |
| ! | ATAAGAAGCTAACTCATAAT+AGG | - | chr6_3:29890435-29890454 | None:intergenic | 25.0% |
| ! | GTTTGTTCTATGTGTAATTT+CGG | + | chr6_3:29890758-29890777 | Msa0947300:intron | 25.0% |
| ! | AAGAAACAAAAAAGGATGAA+TGG | - | chr6_3:29890813-29890832 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAAGAAACAAAAA+AGG | - | chr6_3:29890821-29890840 | None:intergenic | 25.0% |
| ! | ATCTTTAAATTGTGACTTTG+AGG | + | chr6_3:29890956-29890975 | Msa0947300:intron | 25.0% |
| ! | AACCGATATCAATAAATGTA+AGG | - | chr6_3:29891250-29891269 | None:intergenic | 25.0% |
| ! | CATTGGTATCTCTAATATTA+TGG | + | chr6_3:29891433-29891452 | Msa0947300:three_prime_UTR | 25.0% |
| !! | GCAACATTTGAAATACATAT+TGG | - | chr6_3:29891548-29891567 | None:intergenic | 25.0% |
| TCTTCAACTTCCTGAAAATA+AGG | - | chr6_3:29888338-29888357 | None:intergenic | 30.0% | |
| GAAAACACCGGATAATAATT+GGG | + | chr6_3:29888595-29888614 | Msa0947300:CDS | 30.0% | |
| !! | GTTTCTGATTTGCTTTAGAA+AGG | + | chr6_3:29888837-29888856 | Msa0947300:intron | 30.0% |
| ! | ACTGCTATTCTTCATTGTTT+TGG | + | chr6_3:29888863-29888882 | Msa0947300:intron | 30.0% |
| !!! | CATTGTTTTGGCTTTCTAAA+AGG | + | chr6_3:29888875-29888894 | Msa0947300:intron | 30.0% |
| ! | CTAAAAGGTTAATCGTCTTT+TGG | + | chr6_3:29888890-29888909 | Msa0947300:intron | 30.0% |
| TAAAACTCAACTGAAGCAAA+CGG | - | chr6_3:29889050-29889069 | None:intergenic | 30.0% | |
| !!! | GGAACTGTTTTGAAAATGTT+GGG | - | chr6_3:29889405-29889424 | None:intergenic | 30.0% |
| ! | TTTTCAAAACAGTTCCGTTT+TGG | + | chr6_3:29889409-29889428 | Msa0947300:intron | 30.0% |
| TAATGGCAGCATAGTATTAA+TGG | + | chr6_3:29889435-29889454 | Msa0947300:intron | 30.0% | |
| ! | TATTCCAAACAGTTCAGTTT+TGG | + | chr6_3:29889466-29889485 | Msa0947300:intron | 30.0% |
| AAATCCAAAACTGAACTGTT+TGG | - | chr6_3:29889473-29889492 | None:intergenic | 30.0% | |
| TGTTAATGTAGTTACAAGGT+TGG | + | chr6_3:29889690-29889709 | Msa0947300:intron | 30.0% | |
| GTATTCATGTAATAGGTCAA+GGG | - | chr6_3:29889787-29889806 | None:intergenic | 30.0% | |
| TGTATTCATGTAATAGGTCA+AGG | - | chr6_3:29889788-29889807 | None:intergenic | 30.0% | |
| ATTATTGTGTGATCACGTAT+AGG | - | chr6_3:29889824-29889843 | None:intergenic | 30.0% | |
| AAAAGAATATACTAAAGGGG+AGG | + | chr6_3:29889844-29889863 | Msa0947300:intron | 30.0% | |
| TCATCATAAAGTGTGTTCAT+TGG | - | chr6_3:29890041-29890060 | None:intergenic | 30.0% | |
| TTAAATCACGGCAAAAATGA+GGG | - | chr6_3:29890073-29890092 | None:intergenic | 30.0% | |
| AAAAGTCGATGGTTAAATCA+CGG | - | chr6_3:29890085-29890104 | None:intergenic | 30.0% | |
| !!! | GATTTAACCATCGACTTTTT+AGG | + | chr6_3:29890086-29890105 | Msa0947300:intron | 30.0% |
| ! | ACTAACTTTCCCTTTTAACA+GGG | + | chr6_3:29890174-29890193 | Msa0947300:intron | 30.0% |
| GATTTGATTAATGTCAGATG+AGG | + | chr6_3:29890269-29890288 | Msa0947300:intron | 30.0% | |
| CTCATAATAGGGTATACAAA+AGG | - | chr6_3:29890423-29890442 | None:intergenic | 30.0% | |
| !!! | CTTCTTATTTTGCAAAATGC+AGG | + | chr6_3:29890447-29890466 | Msa0947300:intron | 30.0% |
| CAAGAGGTAATTAAGACATT+AGG | + | chr6_3:29890547-29890566 | Msa0947300:CDS | 30.0% | |
| ! | ACTTTGAGGATAAGTTTGTT+CGG | + | chr6_3:29890970-29890989 | Msa0947300:intron | 30.0% |
| TGTCAAATACAACTAATGGT+AGG | + | chr6_3:29891130-29891149 | Msa0947300:intron | 30.0% | |
| ! | GCATATGCAATATTTTGTAC+AGG | + | chr6_3:29891298-29891317 | Msa0947300:CDS | 30.0% |
| ! | AATATTTTGTACAGGCAAGT+GGG | + | chr6_3:29891306-29891325 | Msa0947300:CDS | 30.0% |
| ! | ATCACAAGTTGAACGAATAT+TGG | + | chr6_3:29891347-29891366 | Msa0947300:CDS | 30.0% |
| GAATTTCCTTCACAACATAA+AGG | + | chr6_3:29891369-29891388 | Msa0947300:CDS | 30.0% | |
| ATGTATCCTTTATGTTGTGA+AGG | - | chr6_3:29891378-29891397 | None:intergenic | 30.0% | |
| CCAATGTAGATAAATACACT+GGG | - | chr6_3:29891419-29891438 | None:intergenic | 30.0% | |
| ACCAATGTAGATAAATACAC+TGG | - | chr6_3:29891420-29891439 | None:intergenic | 30.0% | |
| ATGTATTTCAAATGTTGCAG+TGG | + | chr6_3:29891550-29891569 | Msa0947300:three_prime_UTR | 30.0% | |
| !! | TCTTAGAAAGAGTGTTGTTG+AGG | + | chr6_3:29888166-29888185 | Msa0947300:CDS | 35.0% |
| ! | GAAAATCGAAGAGTGTAAAG+TGG | + | chr6_3:29888232-29888251 | Msa0947300:CDS | 35.0% |
| ! | GAAAGTTGAAGAGTGTAAAG+TGG | + | chr6_3:29888289-29888308 | Msa0947300:CDS | 35.0% |
| ! | CTTCCTCCTAAGATTTTCAA+TGG | + | chr6_3:29888476-29888495 | Msa0947300:CDS | 35.0% |
| ! | TTCCTAGGCTTTTCAACTTT+CGG | - | chr6_3:29888515-29888534 | None:intergenic | 35.0% |
| CATCTATCAGCCTTAAGAAA+AGG | - | chr6_3:29888557-29888576 | None:intergenic | 35.0% | |
| TTCTTAAGGCTGATAGATGT+AGG | + | chr6_3:29888558-29888577 | Msa0947300:CDS | 35.0% | |
| TCTTAAGGCTGATAGATGTA+GGG | + | chr6_3:29888559-29888578 | Msa0947300:CDS | 35.0% | |
| AGCTTACATAAGGAAAACAC+CGG | + | chr6_3:29888583-29888602 | Msa0947300:CDS | 35.0% | |
| GGAAAACACCGGATAATAAT+TGG | + | chr6_3:29888594-29888613 | Msa0947300:CDS | 35.0% | |
| TTCATCGTAAAGAAGAACAG+TGG | + | chr6_3:29889130-29889149 | Msa0947300:intron | 35.0% | |
| ! | TGAAAATGTTGGGCATTGTT+TGG | - | chr6_3:29889395-29889414 | None:intergenic | 35.0% |
| !!! | CGGAACTGTTTTGAAAATGT+TGG | - | chr6_3:29889406-29889425 | None:intergenic | 35.0% |
| !! | CAGTTCCGTTTTGGATATAA+TGG | + | chr6_3:29889418-29889437 | Msa0947300:intron | 35.0% |
| TGCTGCCATTATATCCAAAA+CGG | - | chr6_3:29889426-29889445 | None:intergenic | 35.0% | |
| !!! | CAGTTCAGTTTTGGATTTAG+TGG | + | chr6_3:29889475-29889494 | Msa0947300:intron | 35.0% |
| TAGTGGCAGCTTACAATTAA+TGG | + | chr6_3:29889492-29889511 | Msa0947300:intron | 35.0% | |
| ACAACTCTTTGCGACATTAT+CGG | + | chr6_3:29889610-29889629 | Msa0947300:intron | 35.0% | |
| GATTAATAATTAGGAGGGAG+AGG | - | chr6_3:29889742-29889761 | None:intergenic | 35.0% | |
| TAAATCACGGCAAAAATGAG+GGG | - | chr6_3:29890072-29890091 | None:intergenic | 35.0% | |
| GTTAAATCACGGCAAAAATG+AGG | - | chr6_3:29890074-29890093 | None:intergenic | 35.0% | |
| ! | GACTAACTTTCCCTTTTAAC+AGG | + | chr6_3:29890173-29890192 | Msa0947300:intron | 35.0% |
| TTGATTAATGTCAGATGAGG+TGG | + | chr6_3:29890272-29890291 | Msa0947300:intron | 35.0% | |
| !! | CAAGTGTTGCATTTTTGCTT+TGG | + | chr6_3:29890366-29890385 | Msa0947300:intron | 35.0% |
| ACCAAAAGAGGAAATACAAG+AGG | + | chr6_3:29890531-29890550 | Msa0947300:CDS | 35.0% | |
| ! | ACCTCTTGTATTTCCTCTTT+TGG | - | chr6_3:29890535-29890554 | None:intergenic | 35.0% |
| CATTAGGTCTTCAAGTGAAA+AGG | + | chr6_3:29890563-29890582 | Msa0947300:CDS | 35.0% | |
| GAAACATCGTCTCTATATCA+GGG | - | chr6_3:29890907-29890926 | None:intergenic | 35.0% | |
| AGAAACATCGTCTCTATATC+AGG | - | chr6_3:29890908-29890927 | None:intergenic | 35.0% | |
| AGTTACTTGGAAAAAACCAG+AGG | + | chr6_3:29891188-29891207 | Msa0947300:intron | 35.0% | |
| GTTACTTGGAAAAAACCAGA+GGG | + | chr6_3:29891189-29891208 | Msa0947300:intron | 35.0% | |
| TTACTTGGAAAAAACCAGAG+GGG | + | chr6_3:29891190-29891209 | Msa0947300:intron | 35.0% | |
| ! | CAATATTTTGTACAGGCAAG+TGG | + | chr6_3:29891305-29891324 | Msa0947300:CDS | 35.0% |
| CCCAGTGTATTTATCTACAT+TGG | + | chr6_3:29891416-29891435 | Msa0947300:three_prime_UTR | 35.0% | |
| ! | CAAAGCTCTGACATATATGT+TGG | + | chr6_3:29891579-29891598 | Msa0947300:three_prime_UTR | 35.0% |
| TTGTACGCATACTTACGGAA+AGG | - | chr6_3:29888137-29888156 | None:intergenic | 40.0% | |
| TTTCCGTAAGTATGCGTACA+AGG | + | chr6_3:29888136-29888155 | Msa0947300:CDS | 40.0% | |
| TTCCGTAAGTATGCGTACAA+GGG | + | chr6_3:29888137-29888156 | Msa0947300:CDS | 40.0% | |
| TTCCCTTGTACGCATACTTA+CGG | - | chr6_3:29888142-29888161 | None:intergenic | 40.0% | |
| !! | TAGAAAGAGTGTTGTTGAGG+TGG | + | chr6_3:29888169-29888188 | Msa0947300:CDS | 40.0% |
| ! | TAAAGTGGAGCATCCACAAA+GGG | + | chr6_3:29888304-29888323 | Msa0947300:CDS | 40.0% |
| ! | GGAAGTTGAAGAGTGTAATG+TGG | + | chr6_3:29888346-29888365 | Msa0947300:CDS | 40.0% |
| GAGCCATTGAAAATCTTAGG+AGG | - | chr6_3:29888482-29888501 | None:intergenic | 40.0% | |
| CGAGAGCCATTGAAAATCTT+AGG | - | chr6_3:29888485-29888504 | None:intergenic | 40.0% | |
| GATGTAGGGAAGCTTACATA+AGG | + | chr6_3:29888573-29888592 | Msa0947300:CDS | 40.0% | |
| CACGGAAATGATACTCTTGA+AGG | - | chr6_3:29888661-29888680 | None:intergenic | 40.0% | |
| AGTATCATTTCCGTGATCCA+TGG | + | chr6_3:29888666-29888685 | Msa0947300:CDS | 40.0% | |
| CATATAACAATCACCCTCCA+TGG | - | chr6_3:29888686-29888705 | None:intergenic | 40.0% | |
| AGGGAGGATTCGATCAAAAT+TGG | - | chr6_3:29889764-29889783 | None:intergenic | 40.0% | |
| TCATGTAATAGGTCAAGGGA+GGG | - | chr6_3:29889783-29889802 | None:intergenic | 40.0% | |
| TTCATGTAATAGGTCAAGGG+AGG | - | chr6_3:29889784-29889803 | None:intergenic | 40.0% | |
| GATCACGTATAGGACAGTTA+TGG | - | chr6_3:29889814-29889833 | None:intergenic | 40.0% | |
| ! | TCTGCTGTGATATGCTTTTG+CGG | + | chr6_3:29889884-29889903 | Msa0947300:intron | 40.0% |
| TTTAGGGATGCCTCAGATTT+AGG | + | chr6_3:29890103-29890122 | Msa0947300:intron | 40.0% | |
| TCAATGACACGCAAGATGTT+GGG | - | chr6_3:29890346-29890365 | None:intergenic | 40.0% | |
| TTGCATGCAAGTACCAAAAG+AGG | + | chr6_3:29890519-29890538 | Msa0947300:CDS | 40.0% | |
| CTTTCTCGTGAATACTTAGC+CGG | + | chr6_3:29890604-29890623 | Msa0947300:CDS | 40.0% | |
| TTTCTCGTGAATACTTAGCC+GGG | + | chr6_3:29890605-29890624 | Msa0947300:CDS | 40.0% | |
| AATCGAGGGACTAAGTTACT+TGG | + | chr6_3:29891175-29891194 | Msa0947300:intron | 40.0% | |
| !!! | ATCGGTTGTCGCTTTTAATC+AGG | + | chr6_3:29891263-29891282 | Msa0947300:intron | 40.0% |
| !!! | GTCGCTTTTAATCAGGTATG+CGG | + | chr6_3:29891270-29891289 | Msa0947300:intron | 40.0% |
| TCGTTCAACTTGTGATCATG+AGG | - | chr6_3:29891343-29891362 | None:intergenic | 40.0% | |
| ! | AGCTCTGACATATATGTTGG+AGG | + | chr6_3:29891582-29891601 | Msa0947300:three_prime_UTR | 40.0% |
| ! | TAAAGTGGAGCATCCAGAGA+GGG | + | chr6_3:29888247-29888266 | Msa0947300:CDS | 45.0% |
| ! | GTAAAGTGGAGCATCCACAA+AGG | + | chr6_3:29888303-29888322 | Msa0947300:CDS | 45.0% |
| !!! | GGTCGTGTCTCCTTATTTTC+AGG | + | chr6_3:29888268-29888287 | Msa0947300:CDS | 45.0% |
| ! | TAATGTGGAGCATCCACAGA+GGG | + | chr6_3:29888361-29888380 | Msa0947300:CDS | 45.0% |
| GACCGAAAGTTGAAAAGCCT+AGG | + | chr6_3:29888510-29888529 | Msa0947300:CDS | 45.0% | |
| !! | GGAGGCACCCAATTATTATC+CGG | - | chr6_3:29888605-29888624 | None:intergenic | 45.0% |
| ATCATTTCCGTGATCCATGG+AGG | + | chr6_3:29888669-29888688 | Msa0947300:CDS | 45.0% | |
| TCATTTCCGTGATCCATGGA+GGG | + | chr6_3:29888670-29888689 | Msa0947300:CDS | 45.0% | |
| ATGCTACTGAACCGCACTAA+AGG | + | chr6_3:29888707-29888726 | Msa0947300:CDS | 45.0% | |
| GTACCTGTTCACCTTTAGTG+CGG | - | chr6_3:29888721-29888740 | None:intergenic | 45.0% | |
| AAAGAAGAACAGTGGCACAG+TGG | + | chr6_3:29889138-29889157 | Msa0947300:intron | 45.0% | |
| CTGCTCTGCAATACTCTGTT+TGG | + | chr6_3:29889205-29889224 | Msa0947300:intron | 45.0% | |
| CTGCAATACTCTGTTTGGAC+AGG | + | chr6_3:29889210-29889229 | Msa0947300:intron | 45.0% | |
| AGGCATCCCTAAAAAGTCGA+TGG | - | chr6_3:29890096-29890115 | None:intergenic | 45.0% | |
| TGCCTCAGATTTAGGCAATG+TGG | + | chr6_3:29890111-29890130 | Msa0947300:intron | 45.0% | |
| GCCTCAGATTTAGGCAATGT+GGG | + | chr6_3:29890112-29890131 | Msa0947300:intron | 45.0% | |
| ACCCACATTGCCTAAATCTG+AGG | - | chr6_3:29890116-29890135 | None:intergenic | 45.0% | |
| GTCAATGACACGCAAGATGT+TGG | - | chr6_3:29890347-29890366 | None:intergenic | 45.0% | |
| TGCATGCAAGTTTCTGCGTT+TGG | - | chr6_3:29890508-29890527 | None:intergenic | 45.0% | |
| CGGCTAAGTATTCACGAGAA+AGG | - | chr6_3:29890606-29890625 | None:intergenic | 45.0% | |
| AGTCACATAAGTCCAAGTCC+CGG | - | chr6_3:29890626-29890645 | None:intergenic | 45.0% | |
| !! | ATATGCAATTTTGGCCCCTC+TGG | - | chr6_3:29891207-29891226 | None:intergenic | 45.0% |
| CCTTTAATAGTCGACTGCTG+CGG | + | chr6_3:29891465-29891484 | Msa0947300:three_prime_UTR | 45.0% | |
| GTGAAGGGAAAACTATGGTG+AGG | + | chr6_3:29891487-29891506 | Msa0947300:three_prime_UTR | 45.0% | |
| !! | AATTTATTATAATAATTTGA+GGG | - | chr6_3:29890841-29890860 | None:intergenic | 5.0% |
| ! | AGGTGGATTCTTGTCGTGCT+AGG | + | chr6_3:29888186-29888205 | Msa0947300:CDS | 50.0% |
| GGATTCTTGTCGTGCTAGGA+AGG | + | chr6_3:29888190-29888209 | Msa0947300:CDS | 50.0% | |
| ! | GTAAAGTGGAGCATCCAGAG+AGG | + | chr6_3:29888246-29888265 | Msa0947300:CDS | 50.0% |
| TAAGGAGACACGACCCTTTG+TGG | - | chr6_3:29888320-29888339 | None:intergenic | 50.0% | |
| ! | GTAATGTGGAGCATCCACAG+AGG | + | chr6_3:29888360-29888379 | Msa0947300:CDS | 50.0% |
| ! | AGACGCTTTTCAACGAGAGG+AGG | - | chr6_3:29888638-29888657 | None:intergenic | 50.0% |
| ! | AGGAGACGCTTTTCAACGAG+AGG | - | chr6_3:29888641-29888660 | None:intergenic | 50.0% |
| CAATCACCCTCCATGGATCA+CGG | - | chr6_3:29888679-29888698 | None:intergenic | 50.0% | |
| GAACCGCACTAAAGGTGAAC+AGG | + | chr6_3:29888715-29888734 | Msa0947300:CDS | 50.0% | |
| CAAGCTCTTGATTCTCGGGT+AGG | - | chr6_3:29889718-29889737 | None:intergenic | 50.0% | |
| CTACCCGAGAATCAAGAGCT+TGG | + | chr6_3:29889716-29889735 | Msa0947300:intron | 50.0% | |
| AGGCCAAGCTCTTGATTCTC+GGG | - | chr6_3:29889722-29889741 | None:intergenic | 50.0% | |
| GAGGCCAAGCTCTTGATTCT+CGG | - | chr6_3:29889723-29889742 | None:intergenic | 50.0% | |
| TGTAATAGGTCAAGGGAGGG+AGG | - | chr6_3:29889780-29889799 | None:intergenic | 50.0% | |
| GTGAATACTTAGCCGGGACT+TGG | + | chr6_3:29890611-29890630 | Msa0947300:CDS | 50.0% | |
| GTGACTGAACTGCACAGTGT+TGG | + | chr6_3:29890640-29890659 | Msa0947300:CDS | 50.0% | |
| TGTTCGGAGACAAGCGAACA+TGG | + | chr6_3:29890986-29891005 | Msa0947300:intron | 50.0% | |
| CCGCAGCAGTCGACTATTAA+AGG | - | chr6_3:29891468-29891487 | None:intergenic | 50.0% | |
| CTGCGGTGAAGGGAAAACTA+TGG | + | chr6_3:29891482-29891501 | Msa0947300:three_prime_UTR | 50.0% | |
| GGGAAAACTATGGTGAGGCA+TGG | + | chr6_3:29891492-29891511 | Msa0947300:three_prime_UTR | 50.0% | |
| TAAGGAGACACGACCCTCTC+TGG | - | chr6_3:29888263-29888282 | None:intergenic | 55.0% | |
| ! | AGAGGAGGTGTAGAACGTGG+AGG | - | chr6_3:29888623-29888642 | None:intergenic | 55.0% |
| ! | ACGAGAGGAGGTGTAGAACG+TGG | - | chr6_3:29888626-29888645 | None:intergenic | 55.0% |
| GAAGAACAGTGGCACAGTGG+CGG | + | chr6_3:29889141-29889160 | Msa0947300:intron | 55.0% | |
| ATAGTCGACTGCTGCGGTGA+AGG | + | chr6_3:29891471-29891490 | Msa0947300:three_prime_UTR | 55.0% | |
| TAGTCGACTGCTGCGGTGAA+GGG | + | chr6_3:29891472-29891491 | Msa0947300:three_prime_UTR | 55.0% | |
| GAACGAGACACGACCCTCTG+TGG | - | chr6_3:29888377-29888396 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 29888084 | 29891630 | 29888084 | ID=Msa0947300;Name=Msa0947300 |
| chr6_3 | mRNA | 29888084 | 29891630 | 29888084 | ID=Msa0947300-mRNA-1;Parent=Msa0947300;Name=Msa0947300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=8|1|1|1|1|1|3|228|319 |
| chr6_3 | exon | 29888084 | 29888736 | 29888084 | ID=Msa0947300-mRNA-1:exon:7915;Parent=Msa0947300-mRNA-1 |
| chr6_3 | exon | 29890469 | 29890665 | 29890469 | ID=Msa0947300-mRNA-1:exon:7916;Parent=Msa0947300-mRNA-1 |
| chr6_3 | exon | 29891285 | 29891630 | 29891285 | ID=Msa0947300-mRNA-1:exon:7917;Parent=Msa0947300-mRNA-1 |
| chr6_3 | five_prime_UTR | 29888084 | 29888091 | 29888084 | ID=Msa0947300-mRNA-1:five_prime_utr;Parent=Msa0947300-mRNA-1 |
| chr6_3 | CDS | 29888092 | 29888736 | 29888092 | ID=Msa0947300-mRNA-1:cds;Parent=Msa0947300-mRNA-1 |
| chr6_3 | CDS | 29890469 | 29890665 | 29890469 | ID=Msa0947300-mRNA-1:cds;Parent=Msa0947300-mRNA-1 |
| chr6_3 | CDS | 29891285 | 29891402 | 29891285 | ID=Msa0947300-mRNA-1:cds;Parent=Msa0947300-mRNA-1 |
| chr6_3 | three_prime_UTR | 29891403 | 29891630 | 29891403 | ID=Msa0947300-mRNA-1:three_prime_utr;Parent=Msa0947300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
