Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394740 | XP_024630443.1 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 7.94e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394740 | sp|Q0IGK1|MBD4L_ARATH | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 4.03e-59 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394740 | A0A072TJT5 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 3.79e-155 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095380 | Msa1394740 | 0.802533 | 5.361673e-49 | -8.615850e-47 |
| Msa0824680 | Msa1394740 | 0.800184 | 1.623441e-48 | -8.615850e-47 |
| Msa0172350 | Msa1394740 | 0.802682 | 4.995328e-49 | -8.615850e-47 |
| Msa0222920 | Msa1394740 | 0.808430 | 3.108624e-50 | -8.615850e-47 |
| Msa0224730 | Msa1394740 | 0.817433 | 3.306838e-52 | -8.615850e-47 |
| Msa1280130 | Msa1394740 | 0.807764 | 4.310231e-50 | -8.615850e-47 |
| Msa1335860 | Msa1394740 | 0.801535 | 8.601068e-49 | -8.615850e-47 |
| Msa0392070 | Msa1394740 | 0.803868 | 2.837980e-49 | -8.615850e-47 |
| Msa0438210 | Msa1394740 | 0.996726 | 2.274925e-231 | -8.615850e-47 |
| Msa0480320 | Msa1394740 | 0.801915 | 7.186137e-49 | -8.615850e-47 |
| Msa1044340 | Msa1394740 | 0.803627 | 3.185651e-49 | -8.615850e-47 |
| Msa0267760 | Msa1394740 | 0.808122 | 3.616550e-50 | -8.615850e-47 |
| Msa0358170 | Msa1394740 | 0.809241 | 2.085435e-50 | -8.615850e-47 |
| Msa1217860 | Msa1394740 | 0.801226 | 9.950238e-49 | -8.615850e-47 |
| Msa0521880 | Msa1394740 | 0.806099 | 9.695952e-50 | -8.615850e-47 |
| Msa0526710 | Msa1394740 | 0.802796 | 4.733898e-49 | -8.615850e-47 |
| Msa0532330 | Msa1394740 | 0.829540 | 4.861424e-55 | -8.615850e-47 |
| Msa0591060 | Msa1394740 | 0.809506 | 1.829625e-50 | -8.615850e-47 |
| Msa0591770 | Msa1394740 | 0.810819 | 9.536172e-51 | -8.615850e-47 |
| Msa0896220 | Msa1394740 | 0.802181 | 6.336038e-49 | -8.615850e-47 |
| Msa0947300 | Msa1394740 | 0.860726 | 1.689821e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394740 | MtrunA17_Chr5g0422001 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 7.30e-159 | 444 |
| Msa1394740 | MtrunA17_Chr5g0421951 | 66.667 | 321 | 54 | 6 | 1 | 313 | 1 | 276 | 5.47e-137 | 389 |
| Msa1394740 | MtrunA17_Chr6g0461801 | 59.389 | 229 | 28 | 7 | 1 | 216 | 1 | 177 | 4.84e-70 | 217 |
| Msa1394740 | MtrunA17_Chr6g0465351 | 78.125 | 64 | 14 | 0 | 217 | 280 | 4 | 67 | 1.26e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394740 | AT3G07930.4 | 60.403 | 149 | 54 | 2 | 164 | 312 | 180 | 323 | 2.55e-61 | 198 |
| Msa1394740 | AT3G07930.3 | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 4.10e-60 | 199 |
| Msa1394740 | AT3G07930.2 | 64.151 | 53 | 14 | 2 | 164 | 216 | 296 | 343 | 1.63e-14 | 73.9 |
| Msa1394740 | AT3G07930.1 | 59.259 | 54 | 17 | 2 | 164 | 217 | 296 | 344 | 3.80e-13 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACACCGGATAATAAT+TGG | 0.173506 | tig0021888:-57763 | Msa1394740:CDS |
| ACCTCTTGTATTTCCTCTTT+TGG | 0.193190 | tig0021888:+55825 | None:intergenic |
| ATGGTATATATTTCCTTTAA+TGG | 0.254421 | tig0021888:-54903 | Msa1394740:three_prime_UTR |
| CCGCAGCAGTCGACCATTAA+AGG | 0.260845 | tig0021888:+54890 | None:intergenic |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | tig0021888:+58079 | None:intergenic |
| CGAGAGCCATTGAAAATCTT+AGG | 0.283054 | tig0021888:+57875 | None:intergenic |
| CATTGGTATCTCTAATATTA+TGG | 0.291425 | tig0021888:-54922 | Msa1394740:three_prime_UTR |
| ATCACAAGTTGAACGAATAT+TGG | 0.295409 | tig0021888:-55008 | Msa1394740:CDS |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | tig0021888:-57949 | Msa1394740:CDS |
| TCTTCAACTTCCTGAAAATA+AGG | 0.315866 | tig0021888:+58022 | None:intergenic |
| GCAACATTTGAAATACATAT+TGG | 0.317824 | tig0021888:+54811 | None:intergenic |
| TGCATGCAAGTTTCTGCGTT+TGG | 0.349543 | tig0021888:+55852 | None:intergenic |
| GAATTTCCTTCACAACATAA+AGG | 0.376082 | tig0021888:-54986 | Msa1394740:CDS |
| TAAGGAGACACGACCCTCTC+TGG | 0.408073 | tig0021888:+58097 | None:intergenic |
| CAAGAGGTAATTAAGACATT+AGG | 0.427686 | tig0021888:-55810 | Msa1394740:CDS |
| CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | tig0021888:+57803 | None:intergenic |
| TAAGGAGACACGACCCTTTG+TGG | 0.442932 | tig0021888:+58040 | None:intergenic |
| TTCTTAAGGCTGATAGATGT+AGG | 0.446534 | tig0021888:-57799 | Msa1394740:CDS |
| TTTCTGTCACACAGGGAGAA+TGG | 0.455375 | tig0021888:-58284 | None:intergenic |
| GTGAATACTTAGCCGGGACT+TGG | 0.464673 | tig0021888:-55746 | Msa1394740:CDS |
| CCCAGTGTATTTATCTACAT+TGG | 0.465370 | tig0021888:-54939 | Msa1394740:three_prime_UTR |
| GAAAACACCGGATAATAATT+GGG | 0.469834 | tig0021888:-57762 | Msa1394740:CDS |
| TTTCAGTAAGTATGCGTACA+AGG | 0.478351 | tig0021888:-58221 | Msa1394740:CDS |
| GAACCGCACTAAAGGTGAAC+AGG | 0.481639 | tig0021888:-57642 | Msa1394740:intron |
| CAAAGCTCTGACATATATGT+TGG | 0.482644 | tig0021888:-54777 | Msa1394740:three_prime_UTR |
| CATTAGGTCTTCAAGTGAAA+AGG | 0.482808 | tig0021888:-55794 | Msa1394740:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | tig0021888:-58068 | Msa1394740:CDS |
| AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | tig0021888:-58171 | Msa1394740:CDS |
| ATGGTCGACTGCTGCGGTGA+AGG | 0.487440 | tig0021888:-54884 | Msa1394740:three_prime_UTR |
| TACAAAGAGTGTTGTTGAGG+TGG | 0.494694 | tig0021888:-58188 | Msa1394740:CDS |
| CACGGAAATGATACTCTTGA+AGG | 0.503438 | tig0021888:+57699 | None:intergenic |
| CTTTCTCGTGAATACTTAGC+CGG | 0.505784 | tig0021888:-55753 | Msa1394740:CDS |
| CTGCGGTGAAGGGAAAACTA+TGG | 0.509947 | tig0021888:-54873 | Msa1394740:three_prime_UTR |
| TGGTCGACTGCTGCGGTGAA+GGG | 0.512917 | tig0021888:-54883 | Msa1394740:three_prime_UTR |
| TTGCATGCAAGTACCAAAAG+AGG | 0.526068 | tig0021888:-55838 | Msa1394740:CDS |
| GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | tig0021888:-58167 | Msa1394740:CDS |
| GATGTAGGGAAGCTTACATA+AGG | 0.526950 | tig0021888:-57784 | Msa1394740:CDS |
| TCTTAAGGCTGATAGATGTA+GGG | 0.528906 | tig0021888:-57798 | Msa1394740:CDS |
| GAAAATCGAAGAGTGTAAAG+TGG | 0.533714 | tig0021888:-58125 | Msa1394740:CDS |
| ATGCTACTGAACCGCACTAA+AGG | 0.536386 | tig0021888:-57650 | Msa1394740:CDS |
| ACCAATGTAGATAAATACAC+TGG | 0.539298 | tig0021888:+54938 | None:intergenic |
| ATGTATCCTTTATGTTGTGA+AGG | 0.539485 | tig0021888:+54980 | None:intergenic |
| CCTTTAATGGTCGACTGCTG+CGG | 0.542735 | tig0021888:-54890 | Msa1394740:three_prime_UTR |
| GGAGGCACCCAATTATTATC+CGG | 0.546937 | tig0021888:+57755 | None:intergenic |
| AGCTCTGACATATATGTTGG+AGG | 0.548205 | tig0021888:-54774 | Msa1394740:three_prime_UTR |
| CATATAACAATCACCCTCCA+TGG | 0.550910 | tig0021888:+57674 | None:intergenic |
| AGTATCATTTCCGTGATCCA+TGG | 0.552016 | tig0021888:-57691 | Msa1394740:CDS |
| ATGTATTTCAAATGTTGCAG+TGG | 0.558641 | tig0021888:-54806 | Msa1394740:three_prime_UTR |
| CGGCTAAGTATTCACGAGAA+AGG | 0.563641 | tig0021888:+55754 | None:intergenic |
| TTTCTCGTGAATACTTAGCC+GGG | 0.570744 | tig0021888:-55752 | Msa1394740:CDS |
| TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | tig0021888:-58053 | Msa1394740:CDS |
| AGTCACATACGTCCAAGTCC+CGG | 0.578897 | tig0021888:+55734 | None:intergenic |
| TCTTACAAAGAGTGTTGTTG+AGG | 0.587653 | tig0021888:-58191 | Msa1394740:CDS |
| GAACGAGACACGACCCTCTG+TGG | 0.587983 | tig0021888:+57983 | None:intergenic |
| CAATCACCCTCCATGGATCA+CGG | 0.603020 | tig0021888:+57681 | None:intergenic |
| TCGTTCAACTTGTGATCATG+AGG | 0.604180 | tig0021888:+55015 | None:intergenic |
| GACCGAAAGTTGAAAAGCCT+AGG | 0.611563 | tig0021888:-57847 | Msa1394740:CDS |
| TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | tig0021888:-58110 | Msa1394740:CDS |
| TTCAGTAAGTATGCGTACAA+GGG | 0.620982 | tig0021888:-58220 | Msa1394740:CDS |
| TTGTACGCATACTTACTGAA+AGG | 0.621933 | tig0021888:+58223 | None:intergenic |
| GAGCCATTGAAAATCTTAGG+AGG | 0.626770 | tig0021888:+57878 | None:intergenic |
| GGGAAAACTATGGTGAGGCA+TGG | 0.628164 | tig0021888:-54863 | Msa1394740:three_prime_UTR |
| GGAAGTTGAAGAGTGTAATG+TGG | 0.635335 | tig0021888:-58011 | Msa1394740:CDS |
| ACCAAAAGAGGAAATACAAG+AGG | 0.636548 | tig0021888:-55826 | Msa1394740:CDS |
| GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | tig0021888:-58111 | Msa1394740:CDS |
| GTACCTGTTCACCTTTAGTG+CGG | 0.640154 | tig0021888:+57639 | None:intergenic |
| TAATGTGGAGCATCCACAGA+GGG | 0.640527 | tig0021888:-57996 | Msa1394740:CDS |
| CCAATGTAGATAAATACACT+GGG | 0.640771 | tig0021888:+54939 | None:intergenic |
| ATCATTTCCGTGATCCATGG+AGG | 0.642513 | tig0021888:-57688 | Msa1394740:CDS |
| TCATTTCCGTGATCCATGGA+GGG | 0.656462 | tig0021888:-57687 | Msa1394740:CDS |
| AGCTTACATAAGGAAAACAC+CGG | 0.664968 | tig0021888:-57774 | Msa1394740:CDS |
| GTGAAGGGAAAACTATGGTG+AGG | 0.669978 | tig0021888:-54868 | Msa1394740:three_prime_UTR |
| ACGAGAGGAGGTGTAGAACG+TGG | 0.676331 | tig0021888:+57734 | None:intergenic |
| GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | tig0021888:-58054 | Msa1394740:CDS |
| GTGACTGAACTGCACAGTGT+TGG | 0.706346 | tig0021888:-55717 | Msa1394740:CDS |
| AGAGGAGGTGTAGAACGTGG+AGG | 0.751771 | tig0021888:+57737 | None:intergenic |
| GTAATGTGGAGCATCCACAG+AGG | 0.810807 | tig0021888:-57997 | Msa1394740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATAAAATATTTA+AGG | + | tig0021888:57751-57770 | None:intergenic | 0.0% |
| !! | ATAATAAAAGAATATACTAA+AGG | - | tig0021888:56503-56522 | Msa1394740:intron | 10.0% |
| !! | TAATAAAAGAATATACTAAA+GGG | - | tig0021888:56504-56523 | Msa1394740:intron | 10.0% |
| !! | CAATTTATTATAATAATTTG+AGG | + | tig0021888:57506-57525 | None:intergenic | 10.0% |
| !!! | TTCTTTAATTTTTATAATCA+AGG | - | tig0021888:57826-57845 | Msa1394740:CDS | 10.0% |
| !!! | TCTTTAATTTTTATAATCAA+GGG | - | tig0021888:57827-57846 | Msa1394740:CDS | 10.0% |
| !! | AGAAATTATGATTAAGAATT+TGG | - | tig0021888:55628-55647 | Msa1394740:intron | 15.0% |
| !! | TAGTAATTTAGAAATAAAGA+AGG | - | tig0021888:55995-56014 | Msa1394740:intron | 15.0% |
| !! | TGTTCAATATATAACATTAT+TGG | - | tig0021888:56225-56244 | Msa1394740:intron | 15.0% |
| !! | TCAAAATTGGATTAATAATT+AGG | + | tig0021888:56415-56434 | None:intergenic | 15.0% |
| !! | AATAAAAGAATATACTAAAG+GGG | - | tig0021888:56505-56524 | Msa1394740:intron | 15.0% |
| !! | AAAAAAAAAATCATGTGAAA+AGG | + | tig0021888:56808-56827 | None:intergenic | 15.0% |
| !! | ATTTGAGAATATGTTAAATT+AGG | - | tig0021888:56966-56985 | Msa1394740:intron | 15.0% |
| !!! | ATTTTTAACATGTTACTTTT+AGG | - | tig0021888:57371-57390 | Msa1394740:intron | 15.0% |
| !!! | TATTTGACATAAATCTTTTA+AGG | + | tig0021888:57785-57804 | None:intergenic | 15.0% |
| !!! | AAAAACTAAACCTTTTCTTA+AGG | - | tig0021888:55208-55227 | Msa1394740:intron | 20.0% |
| !!! | ATTTGAAATTTATCTTCTTG+AGG | - | tig0021888:55597-55616 | Msa1394740:intron | 20.0% |
| !!! | AGTCTTTAAAAAAGAGAAAA+AGG | + | tig0021888:55831-55850 | None:intergenic | 20.0% |
| !!! | AGAATTAATATTTTACATGC+TGG | + | tig0021888:55971-55990 | None:intergenic | 20.0% |
| !! | ATAAAGAAGGATAATGTATT+AGG | - | tig0021888:56008-56027 | Msa1394740:intron | 20.0% |
| !! | ATAATGTTAATGTAGTTACA+AGG | - | tig0021888:56350-56369 | Msa1394740:intron | 20.0% |
| !! | AATTGGATTAATAATTAGGA+GGG | + | tig0021888:56411-56430 | None:intergenic | 20.0% |
| !! | AAATTGGATTAATAATTAGG+AGG | + | tig0021888:56412-56431 | None:intergenic | 20.0% |
| !! | TCACTATAAAAAAGAACTAA+TGG | + | tig0021888:56679-56698 | None:intergenic | 20.0% |
| !! | AATATGTTAAATTAGGAAAC+TGG | - | tig0021888:56973-56992 | Msa1394740:intron | 20.0% |
| !!! | TTTAGGCTAAATTACAATTT+TGG | - | tig0021888:57388-57407 | Msa1394740:intron | 20.0% |
| !! | AAATCACTAAAAAAAACTAG+AGG | + | tig0021888:57450-57469 | None:intergenic | 20.0% |
| !! | TTTATGTCAAATACAACTAA+TGG | - | tig0021888:57792-57811 | Msa1394740:CDS | 20.0% |
| !!! | TACAATGTTATATGCAATTT+TGG | + | tig0021888:57882-57901 | None:intergenic | 20.0% |
| !! | ATGGTATATATTTCCTTTAA+TGG | - | tig0021888:58118-58137 | Msa1394740:CDS | 20.0% |
| !! | TCTTCAACTTTCTGAAAATA+AGG | + | tig0021888:54945-54964 | None:intergenic | 25.0% |
| !! | TTGAAGATTTAGAACAGTTT+AGG | - | tig0021888:55072-55091 | Msa1394740:CDS | 25.0% |
| !!! | GTTTTTCTTTTTGATTTCCT+AGG | + | tig0021888:55194-55213 | None:intergenic | 25.0% |
| ! | AACAGTATCATAATAAAGTC+AGG | + | tig0021888:55452-55471 | None:intergenic | 25.0% |
| ! | TGAATTCAAAATGACTCAAA+AGG | + | tig0021888:55778-55797 | None:intergenic | 25.0% |
| !! | TTTTCTACAGAACAACAAAA+AGG | + | tig0021888:55944-55963 | None:intergenic | 25.0% |
| !! | ATGGAACTTTTTGTAATAAC+TGG | - | tig0021888:56175-56194 | Msa1394740:intron | 25.0% |
| ! | TGGTTATGTATTCATGTAAT+AGG | + | tig0021888:56458-56477 | None:intergenic | 25.0% |
| ! | ATATAGAAGCAACATGAAAA+TGG | + | tig0021888:56610-56629 | None:intergenic | 25.0% |
| !!! | ATTTAACCATCGACTTTTTA+GGG | - | tig0021888:56751-56770 | Msa1394740:intron | 25.0% |
| ! | ACAAAATATCCCTGTTAAAA+GGG | + | tig0021888:56850-56869 | None:intergenic | 25.0% |
| ! | AACAAAATATCCCTGTTAAA+AGG | + | tig0021888:56851-56870 | None:intergenic | 25.0% |
| ! | TAAGAAGCTAACTCATAATA+GGG | + | tig0021888:57098-57117 | None:intergenic | 25.0% |
| ! | ATAAGAAGCTAACTCATAAT+AGG | + | tig0021888:57099-57118 | None:intergenic | 25.0% |
| ! | GTTTGTTCTATGTGTAATTT+CGG | - | tig0021888:57422-57441 | Msa1394740:intron | 25.0% |
| ! | AAGAAACAAAAAAGGATGAA+TGG | + | tig0021888:57477-57496 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAAGAAACAAAAA+AGG | + | tig0021888:57485-57504 | None:intergenic | 25.0% |
| ! | ATCTTTAAATTGTGACTTTG+AGG | - | tig0021888:57620-57639 | Msa1394740:intron | 25.0% |
| !! | TTCCTTACATTGATTGATAT+CGG | - | tig0021888:57911-57930 | Msa1394740:CDS | 25.0% |
| ! | CATTGGTATCTCTAATATTA+TGG | - | tig0021888:58099-58118 | Msa1394740:CDS | 25.0% |
| !! | GCAACATTTGAAATACATAT+TGG | + | tig0021888:58213-58232 | None:intergenic | 25.0% |
| TCTTCAACTTCCTGAAAATA+AGG | + | tig0021888:55002-55021 | None:intergenic | 30.0% | |
| GAAAACACCGGATAATAATT+GGG | - | tig0021888:55259-55278 | Msa1394740:intron | 30.0% | |
| !! | GTTTCTGATTTGCTTTAGAA+AGG | - | tig0021888:55501-55520 | Msa1394740:intron | 30.0% |
| ! | ACTGCTATTCTTCATTGTTT+TGG | - | tig0021888:55527-55546 | Msa1394740:intron | 30.0% |
| !!! | CATTGTTTTGGCTTTCTAAA+AGG | - | tig0021888:55539-55558 | Msa1394740:intron | 30.0% |
| ! | CTAAAAGGTTAATCGTCTTT+TGG | - | tig0021888:55554-55573 | Msa1394740:intron | 30.0% |
| TAAAACTCAACTGAAGCAAA+CGG | + | tig0021888:55714-55733 | None:intergenic | 30.0% | |
| !!! | GGAACTGTTTTGAAAATGTT+GGG | + | tig0021888:56069-56088 | None:intergenic | 30.0% |
| ! | TTTTCAAAACAGTTCCGTTT+TGG | - | tig0021888:56073-56092 | Msa1394740:intron | 30.0% |
| TAATGGCAGCATAGTATTAA+TGG | - | tig0021888:56099-56118 | Msa1394740:intron | 30.0% | |
| ! | TATTCCAAACAGTTCAGTTT+TGG | - | tig0021888:56130-56149 | Msa1394740:intron | 30.0% |
| AAATCCAAAACTGAACTGTT+TGG | + | tig0021888:56137-56156 | None:intergenic | 30.0% | |
| TGTTAATGTAGTTACAAGGT+TGG | - | tig0021888:56354-56373 | Msa1394740:intron | 30.0% | |
| GTATTCATGTAATAGGTCAA+GGG | + | tig0021888:56451-56470 | None:intergenic | 30.0% | |
| TGTATTCATGTAATAGGTCA+AGG | + | tig0021888:56452-56471 | None:intergenic | 30.0% | |
| ATTATTGTGTGATCACGTAT+AGG | + | tig0021888:56488-56507 | None:intergenic | 30.0% | |
| AAAAGAATATACTAAAGGGG+AGG | - | tig0021888:56508-56527 | Msa1394740:intron | 30.0% | |
| TCATCATAAAGTGTGTTCAT+TGG | + | tig0021888:56705-56724 | None:intergenic | 30.0% | |
| TTAAATCACGGCAAAAATGA+GGG | + | tig0021888:56737-56756 | None:intergenic | 30.0% | |
| AAAAGTCGATGGTTAAATCA+CGG | + | tig0021888:56749-56768 | None:intergenic | 30.0% | |
| !!! | GATTTAACCATCGACTTTTT+AGG | - | tig0021888:56750-56769 | Msa1394740:intron | 30.0% |
| ! | ACTAACTTTCCCTTTTAACA+GGG | - | tig0021888:56838-56857 | Msa1394740:intron | 30.0% |
| GATTTGATTAATGTCAGATG+AGG | - | tig0021888:56933-56952 | Msa1394740:intron | 30.0% | |
| CTCATAATAGGGTATACAAA+AGG | + | tig0021888:57087-57106 | None:intergenic | 30.0% | |
| !!! | CTTCTTATTTTGCAAAATGC+AGG | - | tig0021888:57111-57130 | Msa1394740:intron | 30.0% |
| CAAGAGGTAATTAAGACATT+AGG | - | tig0021888:57211-57230 | Msa1394740:intron | 30.0% | |
| ! | ACTTTGAGGATAAGTTTGTT+CGG | - | tig0021888:57634-57653 | Msa1394740:intron | 30.0% |
| TGTCAAATACAACTAATGGT+AGG | - | tig0021888:57796-57815 | Msa1394740:CDS | 30.0% | |
| AACCGATATCAATCAATGTA+AGG | + | tig0021888:57916-57935 | None:intergenic | 30.0% | |
| ! | GCATATGCAATATTTTGTAC+AGG | - | tig0021888:57964-57983 | Msa1394740:CDS | 30.0% |
| ! | AATATTTTGTACAGGCAAGT+GGG | - | tig0021888:57972-57991 | Msa1394740:CDS | 30.0% |
| ! | ATCACAAGTTGAACGAATAT+TGG | - | tig0021888:58013-58032 | Msa1394740:CDS | 30.0% |
| GAATTTCCTTCACAACATAA+AGG | - | tig0021888:58035-58054 | Msa1394740:CDS | 30.0% | |
| ATGTATCCTTTATGTTGTGA+AGG | + | tig0021888:58044-58063 | None:intergenic | 30.0% | |
| CCAATGTAGATAAATACACT+GGG | + | tig0021888:58085-58104 | None:intergenic | 30.0% | |
| ACCAATGTAGATAAATACAC+TGG | + | tig0021888:58086-58105 | None:intergenic | 30.0% | |
| ATGTATTTCAAATGTTGCAG+TGG | - | tig0021888:58215-58234 | Msa1394740:CDS | 30.0% | |
| TTGTACGCATACTTACTGAA+AGG | + | tig0021888:54801-54820 | None:intergenic | 35.0% | |
| TTTCAGTAAGTATGCGTACA+AGG | - | tig0021888:54800-54819 | Msa1394740:three_prime_UTR | 35.0% | |
| TTCAGTAAGTATGCGTACAA+GGG | - | tig0021888:54801-54820 | Msa1394740:three_prime_UTR | 35.0% | |
| !! | TCTTACAAAGAGTGTTGTTG+AGG | - | tig0021888:54830-54849 | Msa1394740:three_prime_UTR | 35.0% |
| ! | GAAAATCGAAGAGTGTAAAG+TGG | - | tig0021888:54896-54915 | Msa1394740:three_prime_UTR | 35.0% |
| ! | GAAAGTTGAAGAGTGTAAAG+TGG | - | tig0021888:54953-54972 | Msa1394740:three_prime_UTR | 35.0% |
| ! | CTTCCTCCTAAGATTTTCAA+TGG | - | tig0021888:55140-55159 | Msa1394740:intron | 35.0% |
| ! | TTCCTAGGCTTTTCAACTTT+CGG | + | tig0021888:55179-55198 | None:intergenic | 35.0% |
| CATCTATCAGCCTTAAGAAA+AGG | + | tig0021888:55221-55240 | None:intergenic | 35.0% | |
| TTCTTAAGGCTGATAGATGT+AGG | - | tig0021888:55222-55241 | Msa1394740:intron | 35.0% | |
| TCTTAAGGCTGATAGATGTA+GGG | - | tig0021888:55223-55242 | Msa1394740:intron | 35.0% | |
| AGCTTACATAAGGAAAACAC+CGG | - | tig0021888:55247-55266 | Msa1394740:intron | 35.0% | |
| GGAAAACACCGGATAATAAT+TGG | - | tig0021888:55258-55277 | Msa1394740:intron | 35.0% | |
| TTCATCGTAAAGAAGAACAG+TGG | - | tig0021888:55794-55813 | Msa1394740:CDS | 35.0% | |
| ! | TGAAAATGTTGGGCATTGTT+TGG | + | tig0021888:56059-56078 | None:intergenic | 35.0% |
| !!! | CGGAACTGTTTTGAAAATGT+TGG | + | tig0021888:56070-56089 | None:intergenic | 35.0% |
| !! | CAGTTCCGTTTTGGATATAA+TGG | - | tig0021888:56082-56101 | Msa1394740:intron | 35.0% |
| TGCTGCCATTATATCCAAAA+CGG | + | tig0021888:56090-56109 | None:intergenic | 35.0% | |
| !!! | CAGTTCAGTTTTGGATTTAG+TGG | - | tig0021888:56139-56158 | Msa1394740:intron | 35.0% |
| TAGTGGCAGCTTACAATTAA+TGG | - | tig0021888:56156-56175 | Msa1394740:intron | 35.0% | |
| ACAACTCTTTGCGACATTAT+CGG | - | tig0021888:56274-56293 | Msa1394740:intron | 35.0% | |
| TAAATCACGGCAAAAATGAG+GGG | + | tig0021888:56736-56755 | None:intergenic | 35.0% | |
| GTTAAATCACGGCAAAAATG+AGG | + | tig0021888:56738-56757 | None:intergenic | 35.0% | |
| ! | GACTAACTTTCCCTTTTAAC+AGG | - | tig0021888:56837-56856 | Msa1394740:intron | 35.0% |
| TTGATTAATGTCAGATGAGG+TGG | - | tig0021888:56936-56955 | Msa1394740:intron | 35.0% | |
| !! | CAAGTGTTGCATTTTTGCTT+TGG | - | tig0021888:57030-57049 | Msa1394740:intron | 35.0% |
| ACCAAAAGAGGAAATACAAG+AGG | - | tig0021888:57195-57214 | Msa1394740:intron | 35.0% | |
| ! | ACCTCTTGTATTTCCTCTTT+TGG | + | tig0021888:57199-57218 | None:intergenic | 35.0% |
| CATTAGGTCTTCAAGTGAAA+AGG | - | tig0021888:57227-57246 | Msa1394740:intron | 35.0% | |
| GAAACATCGTCTCTATATCA+GGG | + | tig0021888:57571-57590 | None:intergenic | 35.0% | |
| AGAAACATCGTCTCTATATC+AGG | + | tig0021888:57572-57591 | None:intergenic | 35.0% | |
| AATCAAGGGACTAAGTTACT+TGG | - | tig0021888:57841-57860 | Msa1394740:CDS | 35.0% | |
| AGTTACTTGGAAAAAACCAG+AGG | - | tig0021888:57854-57873 | Msa1394740:CDS | 35.0% | |
| GTTACTTGGAAAAAACCAGA+GGG | - | tig0021888:57855-57874 | Msa1394740:CDS | 35.0% | |
| TTACTTGGAAAAAACCAGAG+GGG | - | tig0021888:57856-57875 | Msa1394740:CDS | 35.0% | |
| ! | CAATATTTTGTACAGGCAAG+TGG | - | tig0021888:57971-57990 | Msa1394740:CDS | 35.0% |
| CCCAGTGTATTTATCTACAT+TGG | - | tig0021888:58082-58101 | Msa1394740:CDS | 35.0% | |
| ! | CAAAGCTCTGACATATATGT+TGG | - | tig0021888:58244-58263 | Msa1394740:CDS | 35.0% |
| !! | TACAAAGAGTGTTGTTGAGG+TGG | - | tig0021888:54833-54852 | Msa1394740:three_prime_UTR | 40.0% |
| ! | TAAAGTGGAGCATCCACAAA+GGG | - | tig0021888:54968-54987 | Msa1394740:exon | 40.0% |
| ! | GGAAGTTGAAGAGTGTAATG+TGG | - | tig0021888:55010-55029 | Msa1394740:CDS | 40.0% |
| GAGCCATTGAAAATCTTAGG+AGG | + | tig0021888:55146-55165 | None:intergenic | 40.0% | |
| CGAGAGCCATTGAAAATCTT+AGG | + | tig0021888:55149-55168 | None:intergenic | 40.0% | |
| GATGTAGGGAAGCTTACATA+AGG | - | tig0021888:55237-55256 | Msa1394740:intron | 40.0% | |
| CACGGAAATGATACTCTTGA+AGG | + | tig0021888:55325-55344 | None:intergenic | 40.0% | |
| AGTATCATTTCCGTGATCCA+TGG | - | tig0021888:55330-55349 | Msa1394740:intron | 40.0% | |
| CATATAACAATCACCCTCCA+TGG | + | tig0021888:55350-55369 | None:intergenic | 40.0% | |
| AGGGAGGATTCGATCAAAAT+TGG | + | tig0021888:56428-56447 | None:intergenic | 40.0% | |
| TCATGTAATAGGTCAAGGGA+GGG | + | tig0021888:56447-56466 | None:intergenic | 40.0% | |
| TTCATGTAATAGGTCAAGGG+AGG | + | tig0021888:56448-56467 | None:intergenic | 40.0% | |
| GATCACGTATAGGACAGTTA+TGG | + | tig0021888:56478-56497 | None:intergenic | 40.0% | |
| ! | TCTGCTGTGATATGCTTTTG+CGG | - | tig0021888:56548-56567 | Msa1394740:intron | 40.0% |
| TTTAGGGATGCCTCAGATTT+AGG | - | tig0021888:56767-56786 | Msa1394740:intron | 40.0% | |
| TCAATGACACGCAAGATGTT+GGG | + | tig0021888:57010-57029 | None:intergenic | 40.0% | |
| TTGCATGCAAGTACCAAAAG+AGG | - | tig0021888:57183-57202 | Msa1394740:intron | 40.0% | |
| CTTTCTCGTGAATACTTAGC+CGG | - | tig0021888:57268-57287 | Msa1394740:intron | 40.0% | |
| TTTCTCGTGAATACTTAGCC+GGG | - | tig0021888:57269-57288 | Msa1394740:intron | 40.0% | |
| !!! | ATCGGTTGTCGCTTTTAATC+AGG | - | tig0021888:57929-57948 | Msa1394740:CDS | 40.0% |
| !!! | GTCGCTTTTAATCAGGTATG+CGG | - | tig0021888:57936-57955 | Msa1394740:CDS | 40.0% |
| TCGTTCAACTTGTGATCATG+AGG | + | tig0021888:58009-58028 | None:intergenic | 40.0% | |
| ! | AGCTCTGACATATATGTTGG+AGG | - | tig0021888:58247-58266 | Msa1394740:CDS | 40.0% |
| ! | TAAAGTGGAGCATCCAGAGA+GGG | - | tig0021888:54911-54930 | Msa1394740:three_prime_UTR | 45.0% |
| ! | GTAAAGTGGAGCATCCACAA+AGG | - | tig0021888:54967-54986 | Msa1394740:exon | 45.0% |
| !!! | GGTCGTGTCTCCTTATTTTC+AGG | - | tig0021888:54932-54951 | Msa1394740:three_prime_UTR | 45.0% |
| ! | TAATGTGGAGCATCCACAGA+GGG | - | tig0021888:55025-55044 | Msa1394740:CDS | 45.0% |
| GACCGAAAGTTGAAAAGCCT+AGG | - | tig0021888:55174-55193 | Msa1394740:intron | 45.0% | |
| !! | GGAGGCACCCAATTATTATC+CGG | + | tig0021888:55269-55288 | None:intergenic | 45.0% |
| ATCATTTCCGTGATCCATGG+AGG | - | tig0021888:55333-55352 | Msa1394740:intron | 45.0% | |
| TCATTTCCGTGATCCATGGA+GGG | - | tig0021888:55334-55353 | Msa1394740:intron | 45.0% | |
| ATGCTACTGAACCGCACTAA+AGG | - | tig0021888:55371-55390 | Msa1394740:intron | 45.0% | |
| GTACCTGTTCACCTTTAGTG+CGG | + | tig0021888:55385-55404 | None:intergenic | 45.0% | |
| AAAGAAGAACAGTGGCACAG+TGG | - | tig0021888:55802-55821 | Msa1394740:CDS | 45.0% | |
| CTGCTCTGCAATACTCTGTT+TGG | - | tig0021888:55869-55888 | Msa1394740:CDS | 45.0% | |
| CTGCAATACTCTGTTTGGAC+AGG | - | tig0021888:55874-55893 | Msa1394740:CDS | 45.0% | |
| AGACCAAGCTCTTGATTCTC+GGG | + | tig0021888:56386-56405 | None:intergenic | 45.0% | |
| GAGACCAAGCTCTTGATTCT+CGG | + | tig0021888:56387-56406 | None:intergenic | 45.0% | |
| AGGCATCCCTAAAAAGTCGA+TGG | + | tig0021888:56760-56779 | None:intergenic | 45.0% | |
| TGCCTCAGATTTAGGCAATG+TGG | - | tig0021888:56775-56794 | Msa1394740:intron | 45.0% | |
| GCCTCAGATTTAGGCAATGT+GGG | - | tig0021888:56776-56795 | Msa1394740:intron | 45.0% | |
| ACCCACATTGCCTAAATCTG+AGG | + | tig0021888:56780-56799 | None:intergenic | 45.0% | |
| GTCAATGACACGCAAGATGT+TGG | + | tig0021888:57011-57030 | None:intergenic | 45.0% | |
| TGCATGCAAGTTTCTGCGTT+TGG | + | tig0021888:57172-57191 | None:intergenic | 45.0% | |
| CGGCTAAGTATTCACGAGAA+AGG | + | tig0021888:57270-57289 | None:intergenic | 45.0% | |
| !! | ATATGCAATTTTGGCCCCTC+TGG | + | tig0021888:57873-57892 | None:intergenic | 45.0% |
| GTGAAGGGAAAACTATGGTG+AGG | - | tig0021888:58153-58172 | Msa1394740:CDS | 45.0% | |
| !! | AATTTATTATAATAATTTGA+GGG | + | tig0021888:57505-57524 | None:intergenic | 5.0% |
| ! | AGGTGGATTCTTGTCGTGCT+AGG | - | tig0021888:54850-54869 | Msa1394740:three_prime_UTR | 50.0% |
| GGATTCTTGTCGTGCTAGGA+AGG | - | tig0021888:54854-54873 | Msa1394740:three_prime_UTR | 50.0% | |
| ! | GTAAAGTGGAGCATCCAGAG+AGG | - | tig0021888:54910-54929 | Msa1394740:three_prime_UTR | 50.0% |
| TAAGGAGACACGACCCTTTG+TGG | + | tig0021888:54984-55003 | None:intergenic | 50.0% | |
| ! | GTAATGTGGAGCATCCACAG+AGG | - | tig0021888:55024-55043 | Msa1394740:CDS | 50.0% |
| ! | AGACGCTTTTCAACGAGAGG+AGG | + | tig0021888:55302-55321 | None:intergenic | 50.0% |
| ! | AGGAGACGCTTTTCAACGAG+AGG | + | tig0021888:55305-55324 | None:intergenic | 50.0% |
| CAATCACCCTCCATGGATCA+CGG | + | tig0021888:55343-55362 | None:intergenic | 50.0% | |
| GAACCGCACTAAAGGTGAAC+AGG | - | tig0021888:55379-55398 | Msa1394740:intron | 50.0% | |
| CAAGCTCTTGATTCTCGGGT+AGG | + | tig0021888:56382-56401 | None:intergenic | 50.0% | |
| CTACCCGAGAATCAAGAGCT+TGG | - | tig0021888:56380-56399 | Msa1394740:intron | 50.0% | |
| TGTAATAGGTCAAGGGAGGG+AGG | + | tig0021888:56444-56463 | None:intergenic | 50.0% | |
| GTGAATACTTAGCCGGGACT+TGG | - | tig0021888:57275-57294 | Msa1394740:intron | 50.0% | |
| AGTCACATACGTCCAAGTCC+CGG | + | tig0021888:57290-57309 | None:intergenic | 50.0% | |
| GTGACTGAACTGCACAGTGT+TGG | - | tig0021888:57304-57323 | Msa1394740:intron | 50.0% | |
| TGTTCGGAGACAAGCGAACA+TGG | - | tig0021888:57650-57669 | Msa1394740:CDS | 50.0% | |
| CCTTTAATGGTCGACTGCTG+CGG | - | tig0021888:58131-58150 | Msa1394740:CDS | 50.0% | |
| CTGCGGTGAAGGGAAAACTA+TGG | - | tig0021888:58148-58167 | Msa1394740:CDS | 50.0% | |
| GGGAAAACTATGGTGAGGCA+TGG | - | tig0021888:58158-58177 | Msa1394740:CDS | 50.0% | |
| TAAGGAGACACGACCCTCTC+TGG | + | tig0021888:54927-54946 | None:intergenic | 55.0% | |
| ! | AGAGGAGGTGTAGAACGTGG+AGG | + | tig0021888:55287-55306 | None:intergenic | 55.0% |
| ! | ACGAGAGGAGGTGTAGAACG+TGG | + | tig0021888:55290-55309 | None:intergenic | 55.0% |
| CCGCAGCAGTCGACCATTAA+AGG | + | tig0021888:58134-58153 | None:intergenic | 55.0% | |
| GAACGAGACACGACCCTCTG+TGG | + | tig0021888:55041-55060 | None:intergenic | 60.0% | |
| ATGGTCGACTGCTGCGGTGA+AGG | - | tig0021888:58137-58156 | Msa1394740:CDS | 60.0% | |
| TGGTCGACTGCTGCGGTGAA+GGG | - | tig0021888:58138-58157 | Msa1394740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021888 | gene | 54748 | 58295 | 54748 | ID=Msa1394740;Name=Msa1394740 |
| tig0021888 | mRNA | 54748 | 58295 | 54748 | ID=Msa1394740-mRNA-1;Parent=Msa1394740;Name=Msa1394740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=8|1|1|1|1|1|3|227|319 |
| tig0021888 | exon | 54748 | 55092 | 54748 | ID=Msa1394740-mRNA-1:exon:14493;Parent=Msa1394740-mRNA-1 |
| tig0021888 | exon | 55714 | 55910 | 55714 | ID=Msa1394740-mRNA-1:exon:14492;Parent=Msa1394740-mRNA-1 |
| tig0021888 | exon | 57643 | 58295 | 57643 | ID=Msa1394740-mRNA-1:exon:14491;Parent=Msa1394740-mRNA-1 |
| tig0021888 | five_prime_UTR | 58288 | 58295 | 58288 | ID=Msa1394740-mRNA-1:five_prime_utr;Parent=Msa1394740-mRNA-1 |
| tig0021888 | CDS | 57643 | 58287 | 57643 | ID=Msa1394740-mRNA-1:cds;Parent=Msa1394740-mRNA-1 |
| tig0021888 | CDS | 55714 | 55910 | 55714 | ID=Msa1394740-mRNA-1:cds;Parent=Msa1394740-mRNA-1 |
| tig0021888 | CDS | 54975 | 55092 | 54975 | ID=Msa1394740-mRNA-1:cds;Parent=Msa1394740-mRNA-1 |
| tig0021888 | three_prime_UTR | 54748 | 54974 | 54748 | ID=Msa1394740-mRNA-1:three_prime_utr;Parent=Msa1394740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
