Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438210 | XP_024630443.1 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 7.94e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438210 | sp|Q0IGK1|MBD4L_ARATH | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 4.03e-59 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438210 | A0A072TJT5 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 3.79e-155 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084650 | Msa0438210 | 0.800463 | 1.424154e-48 | -8.615850e-47 |
| Msa0095380 | Msa0438210 | 0.801303 | 9.597796e-49 | -8.615850e-47 |
| Msa0172350 | Msa0438210 | 0.800399 | 1.467853e-48 | -8.615850e-47 |
| Msa0222920 | Msa0438210 | 0.810929 | 9.027907e-51 | -8.615850e-47 |
| Msa0224730 | Msa0438210 | 0.817436 | 3.300306e-52 | -8.615850e-47 |
| Msa0392070 | Msa0438210 | 0.806162 | 9.404161e-50 | -8.615850e-47 |
| Msa0438210 | Msa0480320 | 0.804501 | 2.095873e-49 | -8.615850e-47 |
| Msa0438210 | Msa0521880 | 0.807722 | 4.399844e-50 | -8.615850e-47 |
| Msa0438210 | Msa0526710 | 0.800194 | 1.616149e-48 | -8.615850e-47 |
| Msa0438210 | Msa0532330 | 0.827354 | 1.638831e-54 | -8.615850e-47 |
| Msa0438210 | Msa0591060 | 0.807539 | 4.812236e-50 | -8.615850e-47 |
| Msa0438210 | Msa0591770 | 0.809689 | 1.671283e-50 | -8.615850e-47 |
| Msa0438210 | Msa0937810 | 0.800103 | 1.686425e-48 | -8.615850e-47 |
| Msa0438210 | Msa0947300 | 0.856313 | 3.500987e-62 | -8.615850e-47 |
| Msa0438210 | Msa1044340 | 0.803662 | 3.132251e-49 | -8.615850e-47 |
| Msa0438210 | Msa1217860 | 0.803614 | 3.204360e-49 | -8.615850e-47 |
| Msa0438210 | Msa1280130 | 0.810184 | 1.307756e-50 | -8.615850e-47 |
| Msa0438210 | Msa1335860 | 0.801865 | 7.359993e-49 | -8.615850e-47 |
| Msa0438210 | Msa1394740 | 0.996726 | 2.274925e-231 | -8.615850e-47 |
| Msa0267760 | Msa0438210 | 0.805904 | 1.065503e-49 | -8.615850e-47 |
| Msa0358170 | Msa0438210 | 0.807146 | 5.829075e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438210 | MtrunA17_Chr5g0422001 | 73.860 | 329 | 29 | 7 | 1 | 319 | 1 | 282 | 7.30e-159 | 444 |
| Msa0438210 | MtrunA17_Chr5g0421951 | 66.667 | 321 | 54 | 6 | 1 | 313 | 1 | 276 | 5.47e-137 | 389 |
| Msa0438210 | MtrunA17_Chr6g0461801 | 59.389 | 229 | 28 | 7 | 1 | 216 | 1 | 177 | 4.84e-70 | 217 |
| Msa0438210 | MtrunA17_Chr6g0465351 | 78.125 | 64 | 14 | 0 | 217 | 280 | 4 | 67 | 1.26e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438210 | AT3G07930.4 | 60.403 | 149 | 54 | 2 | 164 | 312 | 180 | 323 | 2.55e-61 | 198 |
| Msa0438210 | AT3G07930.3 | 60.403 | 149 | 54 | 2 | 164 | 312 | 296 | 439 | 4.10e-60 | 199 |
| Msa0438210 | AT3G07930.2 | 64.151 | 53 | 14 | 2 | 164 | 216 | 296 | 343 | 1.63e-14 | 73.9 |
| Msa0438210 | AT3G07930.1 | 59.259 | 54 | 17 | 2 | 164 | 217 | 296 | 344 | 3.80e-13 | 69.7 |
Find 77 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAACACCGGATAATAAT+TGG | 0.173506 | 3_3:-2371066 | Msa0438210:CDS |
| ACCTCTTGTATTTCCTCTTT+TGG | 0.193190 | 3_3:+2369128 | None:intergenic |
| ATGGTATATATTTCCTTTAA+TGG | 0.254421 | 3_3:-2368206 | Msa0438210:three_prime_UTR |
| CCGCAGCAGTCGACCATTAA+AGG | 0.260845 | 3_3:+2368193 | None:intergenic |
| TCTTCAACTTTCTGAAAATA+AGG | 0.272553 | 3_3:+2371382 | None:intergenic |
| CGAGAGCCATTGAAAATCTT+AGG | 0.283054 | 3_3:+2371178 | None:intergenic |
| CATTGGTATCTCTAATATTA+TGG | 0.291425 | 3_3:-2368225 | Msa0438210:three_prime_UTR |
| ATCACAAGTTGAACGAATAT+TGG | 0.295409 | 3_3:-2368311 | Msa0438210:CDS |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 3_3:-2371252 | Msa0438210:CDS |
| TCTTCAACTTCCTGAAAATA+AGG | 0.315866 | 3_3:+2371325 | None:intergenic |
| GCAACATTTGAAATACATAT+TGG | 0.317824 | 3_3:+2368114 | None:intergenic |
| TGCATGCAAGTTTCTGCGTT+TGG | 0.349543 | 3_3:+2369155 | None:intergenic |
| GAATTTCCTTCACAACATAA+AGG | 0.376082 | 3_3:-2368289 | Msa0438210:CDS |
| TAAGGAGACACGACCCTCTC+TGG | 0.408073 | 3_3:+2371400 | None:intergenic |
| CAAGAGGTAATTAAGACATT+AGG | 0.427686 | 3_3:-2369113 | Msa0438210:CDS |
| CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | 3_3:+2371106 | None:intergenic |
| TAAGGAGACACGACCCTTTG+TGG | 0.442932 | 3_3:+2371343 | None:intergenic |
| TTCTTAAGGCTGATAGATGT+AGG | 0.446534 | 3_3:-2371102 | Msa0438210:CDS |
| TTTCTGTCACACAGGGAGAA+TGG | 0.455375 | 3_3:-2371587 | None:intergenic |
| GTGAATACTTAGCCGGGACT+TGG | 0.464673 | 3_3:-2369049 | Msa0438210:CDS |
| CCCAGTGTATTTATCTACAT+TGG | 0.465370 | 3_3:-2368242 | Msa0438210:three_prime_UTR |
| GAAAACACCGGATAATAATT+GGG | 0.469834 | 3_3:-2371065 | Msa0438210:CDS |
| TTTCAGTAAGTATGCGTACA+AGG | 0.478351 | 3_3:-2371524 | Msa0438210:CDS |
| GAACCGCACTAAAGGTGAAC+AGG | 0.481639 | 3_3:-2370945 | Msa0438210:intron |
| CAAAGCTCTGACATATATGT+TGG | 0.482644 | 3_3:-2368080 | Msa0438210:three_prime_UTR |
| CATTAGGTCTTCAAGTGAAA+AGG | 0.482808 | 3_3:-2369097 | Msa0438210:CDS |
| GAAAGTTGAAGAGTGTAAAG+TGG | 0.483269 | 3_3:-2371371 | Msa0438210:CDS |
| AGGTGGATTCTTGTCGTGCT+AGG | 0.485309 | 3_3:-2371474 | Msa0438210:CDS |
| ATGGTCGACTGCTGCGGTGA+AGG | 0.487440 | 3_3:-2368187 | Msa0438210:three_prime_UTR |
| TACAAAGAGTGTTGTTGAGG+TGG | 0.494694 | 3_3:-2371491 | Msa0438210:CDS |
| CACGGAAATGATACTCTTGA+AGG | 0.503438 | 3_3:+2371002 | None:intergenic |
| CTTTCTCGTGAATACTTAGC+CGG | 0.505784 | 3_3:-2369056 | Msa0438210:CDS |
| CTGCGGTGAAGGGAAAACTA+TGG | 0.509947 | 3_3:-2368176 | Msa0438210:three_prime_UTR |
| TGGTCGACTGCTGCGGTGAA+GGG | 0.512917 | 3_3:-2368186 | Msa0438210:three_prime_UTR |
| TTGCATGCAAGTACCAAAAG+AGG | 0.526068 | 3_3:-2369141 | Msa0438210:CDS |
| GGATTCTTGTCGTGCTAGGA+AGG | 0.526763 | 3_3:-2371470 | Msa0438210:CDS |
| GATGTAGGGAAGCTTACATA+AGG | 0.526950 | 3_3:-2371087 | Msa0438210:CDS |
| TCTTAAGGCTGATAGATGTA+GGG | 0.528906 | 3_3:-2371101 | Msa0438210:CDS |
| GAAAATCGAAGAGTGTAAAG+TGG | 0.533714 | 3_3:-2371428 | Msa0438210:CDS |
| ATGCTACTGAACCGCACTAA+AGG | 0.536386 | 3_3:-2370953 | Msa0438210:CDS |
| ACCAATGTAGATAAATACAC+TGG | 0.539298 | 3_3:+2368241 | None:intergenic |
| ATGTATCCTTTATGTTGTGA+AGG | 0.539485 | 3_3:+2368283 | None:intergenic |
| CCTTTAATGGTCGACTGCTG+CGG | 0.542735 | 3_3:-2368193 | Msa0438210:three_prime_UTR |
| GGAGGCACCCAATTATTATC+CGG | 0.546937 | 3_3:+2371058 | None:intergenic |
| AGCTCTGACATATATGTTGG+AGG | 0.548205 | 3_3:-2368077 | Msa0438210:three_prime_UTR |
| CATATAACAATCACCCTCCA+TGG | 0.550910 | 3_3:+2370977 | None:intergenic |
| AGTATCATTTCCGTGATCCA+TGG | 0.552016 | 3_3:-2370994 | Msa0438210:CDS |
| ATGTATTTCAAATGTTGCAG+TGG | 0.558641 | 3_3:-2368109 | Msa0438210:three_prime_UTR |
| CGGCTAAGTATTCACGAGAA+AGG | 0.563641 | 3_3:+2369057 | None:intergenic |
| TTTCTCGTGAATACTTAGCC+GGG | 0.570744 | 3_3:-2369055 | Msa0438210:CDS |
| TAAAGTGGAGCATCCACAAA+GGG | 0.571179 | 3_3:-2371356 | Msa0438210:CDS |
| AGTCACATACGTCCAAGTCC+CGG | 0.578897 | 3_3:+2369037 | None:intergenic |
| TCTTACAAAGAGTGTTGTTG+AGG | 0.587653 | 3_3:-2371494 | Msa0438210:CDS |
| GAACGAGACACGACCCTCTG+TGG | 0.587983 | 3_3:+2371286 | None:intergenic |
| CAATCACCCTCCATGGATCA+CGG | 0.603020 | 3_3:+2370984 | None:intergenic |
| TCGTTCAACTTGTGATCATG+AGG | 0.604180 | 3_3:+2368318 | None:intergenic |
| GACCGAAAGTTGAAAAGCCT+AGG | 0.611563 | 3_3:-2371150 | Msa0438210:CDS |
| TAAAGTGGAGCATCCAGAGA+GGG | 0.619283 | 3_3:-2371413 | Msa0438210:CDS |
| TTCAGTAAGTATGCGTACAA+GGG | 0.620982 | 3_3:-2371523 | Msa0438210:CDS |
| TTGTACGCATACTTACTGAA+AGG | 0.621933 | 3_3:+2371526 | None:intergenic |
| GAGCCATTGAAAATCTTAGG+AGG | 0.626770 | 3_3:+2371181 | None:intergenic |
| GGGAAAACTATGGTGAGGCA+TGG | 0.628164 | 3_3:-2368166 | Msa0438210:three_prime_UTR |
| GGAAGTTGAAGAGTGTAATG+TGG | 0.635335 | 3_3:-2371314 | Msa0438210:CDS |
| ACCAAAAGAGGAAATACAAG+AGG | 0.636548 | 3_3:-2369129 | Msa0438210:CDS |
| GTAAAGTGGAGCATCCAGAG+AGG | 0.637261 | 3_3:-2371414 | Msa0438210:CDS |
| GTACCTGTTCACCTTTAGTG+CGG | 0.640154 | 3_3:+2370942 | None:intergenic |
| TAATGTGGAGCATCCACAGA+GGG | 0.640527 | 3_3:-2371299 | Msa0438210:CDS |
| CCAATGTAGATAAATACACT+GGG | 0.640771 | 3_3:+2368242 | None:intergenic |
| ATCATTTCCGTGATCCATGG+AGG | 0.642513 | 3_3:-2370991 | Msa0438210:CDS |
| TCATTTCCGTGATCCATGGA+GGG | 0.656462 | 3_3:-2370990 | Msa0438210:CDS |
| AGCTTACATAAGGAAAACAC+CGG | 0.664968 | 3_3:-2371077 | Msa0438210:CDS |
| GTGAAGGGAAAACTATGGTG+AGG | 0.669978 | 3_3:-2368171 | Msa0438210:three_prime_UTR |
| ACGAGAGGAGGTGTAGAACG+TGG | 0.676331 | 3_3:+2371037 | None:intergenic |
| GTAAAGTGGAGCATCCACAA+AGG | 0.695425 | 3_3:-2371357 | Msa0438210:CDS |
| GTGACTGAACTGCACAGTGT+TGG | 0.706346 | 3_3:-2369020 | Msa0438210:CDS |
| AGAGGAGGTGTAGAACGTGG+AGG | 0.751771 | 3_3:+2371040 | None:intergenic |
| GTAATGTGGAGCATCCACAG+AGG | 0.810807 | 3_3:-2371300 | Msa0438210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATAAAATATTTA+AGG | + | chr3_3:2371054-2371073 | None:intergenic | 0.0% |
| !! | ATAATAAAAGAATATACTAA+AGG | - | chr3_3:2369806-2369825 | Msa0438210:intron | 10.0% |
| !! | TAATAAAAGAATATACTAAA+GGG | - | chr3_3:2369807-2369826 | Msa0438210:intron | 10.0% |
| !! | CAATTTATTATAATAATTTG+AGG | + | chr3_3:2370809-2370828 | None:intergenic | 10.0% |
| !!! | TTCTTTAATTTTTATAATCA+AGG | - | chr3_3:2371129-2371148 | Msa0438210:CDS | 10.0% |
| !!! | TCTTTAATTTTTATAATCAA+GGG | - | chr3_3:2371130-2371149 | Msa0438210:CDS | 10.0% |
| !! | AGAAATTATGATTAAGAATT+TGG | - | chr3_3:2368931-2368950 | Msa0438210:intron | 15.0% |
| !! | TAGTAATTTAGAAATAAAGA+AGG | - | chr3_3:2369298-2369317 | Msa0438210:intron | 15.0% |
| !! | TGTTCAATATATAACATTAT+TGG | - | chr3_3:2369528-2369547 | Msa0438210:intron | 15.0% |
| !! | TCAAAATTGGATTAATAATT+AGG | + | chr3_3:2369718-2369737 | None:intergenic | 15.0% |
| !! | AATAAAAGAATATACTAAAG+GGG | - | chr3_3:2369808-2369827 | Msa0438210:intron | 15.0% |
| !! | AAAAAAAAAATCATGTGAAA+AGG | + | chr3_3:2370111-2370130 | None:intergenic | 15.0% |
| !! | ATTTGAGAATATGTTAAATT+AGG | - | chr3_3:2370269-2370288 | Msa0438210:intron | 15.0% |
| !!! | ATTTTTAACATGTTACTTTT+AGG | - | chr3_3:2370674-2370693 | Msa0438210:intron | 15.0% |
| !!! | TATTTGACATAAATCTTTTA+AGG | + | chr3_3:2371088-2371107 | None:intergenic | 15.0% |
| !!! | AAAAACTAAACCTTTTCTTA+AGG | - | chr3_3:2368511-2368530 | Msa0438210:intron | 20.0% |
| !!! | ATTTGAAATTTATCTTCTTG+AGG | - | chr3_3:2368900-2368919 | Msa0438210:intron | 20.0% |
| !!! | AGTCTTTAAAAAAGAGAAAA+AGG | + | chr3_3:2369134-2369153 | None:intergenic | 20.0% |
| !!! | AGAATTAATATTTTACATGC+TGG | + | chr3_3:2369274-2369293 | None:intergenic | 20.0% |
| !! | ATAAAGAAGGATAATGTATT+AGG | - | chr3_3:2369311-2369330 | Msa0438210:intron | 20.0% |
| !! | ATAATGTTAATGTAGTTACA+AGG | - | chr3_3:2369653-2369672 | Msa0438210:intron | 20.0% |
| !! | AATTGGATTAATAATTAGGA+GGG | + | chr3_3:2369714-2369733 | None:intergenic | 20.0% |
| !! | AAATTGGATTAATAATTAGG+AGG | + | chr3_3:2369715-2369734 | None:intergenic | 20.0% |
| !! | TCACTATAAAAAAGAACTAA+TGG | + | chr3_3:2369982-2370001 | None:intergenic | 20.0% |
| !! | AATATGTTAAATTAGGAAAC+TGG | - | chr3_3:2370276-2370295 | Msa0438210:intron | 20.0% |
| !!! | TTTAGGCTAAATTACAATTT+TGG | - | chr3_3:2370691-2370710 | Msa0438210:intron | 20.0% |
| !! | AAATCACTAAAAAAAACTAG+AGG | + | chr3_3:2370753-2370772 | None:intergenic | 20.0% |
| !! | TTTATGTCAAATACAACTAA+TGG | - | chr3_3:2371095-2371114 | Msa0438210:CDS | 20.0% |
| !!! | TACAATGTTATATGCAATTT+TGG | + | chr3_3:2371185-2371204 | None:intergenic | 20.0% |
| !! | ATGGTATATATTTCCTTTAA+TGG | - | chr3_3:2371421-2371440 | Msa0438210:CDS | 20.0% |
| !! | TCTTCAACTTTCTGAAAATA+AGG | + | chr3_3:2368248-2368267 | None:intergenic | 25.0% |
| !! | TTGAAGATTTAGAACAGTTT+AGG | - | chr3_3:2368375-2368394 | Msa0438210:CDS | 25.0% |
| !!! | GTTTTTCTTTTTGATTTCCT+AGG | + | chr3_3:2368497-2368516 | None:intergenic | 25.0% |
| ! | AACAGTATCATAATAAAGTC+AGG | + | chr3_3:2368755-2368774 | None:intergenic | 25.0% |
| ! | TGAATTCAAAATGACTCAAA+AGG | + | chr3_3:2369081-2369100 | None:intergenic | 25.0% |
| !! | TTTTCTACAGAACAACAAAA+AGG | + | chr3_3:2369247-2369266 | None:intergenic | 25.0% |
| !! | ATGGAACTTTTTGTAATAAC+TGG | - | chr3_3:2369478-2369497 | Msa0438210:intron | 25.0% |
| ! | TGGTTATGTATTCATGTAAT+AGG | + | chr3_3:2369761-2369780 | None:intergenic | 25.0% |
| ! | ATATAGAAGCAACATGAAAA+TGG | + | chr3_3:2369913-2369932 | None:intergenic | 25.0% |
| !!! | ATTTAACCATCGACTTTTTA+GGG | - | chr3_3:2370054-2370073 | Msa0438210:intron | 25.0% |
| ! | ACAAAATATCCCTGTTAAAA+GGG | + | chr3_3:2370153-2370172 | None:intergenic | 25.0% |
| ! | AACAAAATATCCCTGTTAAA+AGG | + | chr3_3:2370154-2370173 | None:intergenic | 25.0% |
| ! | TAAGAAGCTAACTCATAATA+GGG | + | chr3_3:2370401-2370420 | None:intergenic | 25.0% |
| ! | ATAAGAAGCTAACTCATAAT+AGG | + | chr3_3:2370402-2370421 | None:intergenic | 25.0% |
| ! | GTTTGTTCTATGTGTAATTT+CGG | - | chr3_3:2370725-2370744 | Msa0438210:intron | 25.0% |
| ! | AAGAAACAAAAAAGGATGAA+TGG | + | chr3_3:2370780-2370799 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAAGAAACAAAAA+AGG | + | chr3_3:2370788-2370807 | None:intergenic | 25.0% |
| ! | ATCTTTAAATTGTGACTTTG+AGG | - | chr3_3:2370923-2370942 | Msa0438210:intron | 25.0% |
| !! | TTCCTTACATTGATTGATAT+CGG | - | chr3_3:2371214-2371233 | Msa0438210:CDS | 25.0% |
| ! | CATTGGTATCTCTAATATTA+TGG | - | chr3_3:2371402-2371421 | Msa0438210:CDS | 25.0% |
| !! | GCAACATTTGAAATACATAT+TGG | + | chr3_3:2371516-2371535 | None:intergenic | 25.0% |
| TCTTCAACTTCCTGAAAATA+AGG | + | chr3_3:2368305-2368324 | None:intergenic | 30.0% | |
| GAAAACACCGGATAATAATT+GGG | - | chr3_3:2368562-2368581 | Msa0438210:intron | 30.0% | |
| !! | GTTTCTGATTTGCTTTAGAA+AGG | - | chr3_3:2368804-2368823 | Msa0438210:intron | 30.0% |
| ! | ACTGCTATTCTTCATTGTTT+TGG | - | chr3_3:2368830-2368849 | Msa0438210:intron | 30.0% |
| !!! | CATTGTTTTGGCTTTCTAAA+AGG | - | chr3_3:2368842-2368861 | Msa0438210:intron | 30.0% |
| ! | CTAAAAGGTTAATCGTCTTT+TGG | - | chr3_3:2368857-2368876 | Msa0438210:intron | 30.0% |
| TAAAACTCAACTGAAGCAAA+CGG | + | chr3_3:2369017-2369036 | None:intergenic | 30.0% | |
| !!! | GGAACTGTTTTGAAAATGTT+GGG | + | chr3_3:2369372-2369391 | None:intergenic | 30.0% |
| ! | TTTTCAAAACAGTTCCGTTT+TGG | - | chr3_3:2369376-2369395 | Msa0438210:intron | 30.0% |
| TAATGGCAGCATAGTATTAA+TGG | - | chr3_3:2369402-2369421 | Msa0438210:intron | 30.0% | |
| ! | TATTCCAAACAGTTCAGTTT+TGG | - | chr3_3:2369433-2369452 | Msa0438210:intron | 30.0% |
| AAATCCAAAACTGAACTGTT+TGG | + | chr3_3:2369440-2369459 | None:intergenic | 30.0% | |
| TGTTAATGTAGTTACAAGGT+TGG | - | chr3_3:2369657-2369676 | Msa0438210:intron | 30.0% | |
| GTATTCATGTAATAGGTCAA+GGG | + | chr3_3:2369754-2369773 | None:intergenic | 30.0% | |
| TGTATTCATGTAATAGGTCA+AGG | + | chr3_3:2369755-2369774 | None:intergenic | 30.0% | |
| ATTATTGTGTGATCACGTAT+AGG | + | chr3_3:2369791-2369810 | None:intergenic | 30.0% | |
| AAAAGAATATACTAAAGGGG+AGG | - | chr3_3:2369811-2369830 | Msa0438210:intron | 30.0% | |
| TCATCATAAAGTGTGTTCAT+TGG | + | chr3_3:2370008-2370027 | None:intergenic | 30.0% | |
| TTAAATCACGGCAAAAATGA+GGG | + | chr3_3:2370040-2370059 | None:intergenic | 30.0% | |
| AAAAGTCGATGGTTAAATCA+CGG | + | chr3_3:2370052-2370071 | None:intergenic | 30.0% | |
| !!! | GATTTAACCATCGACTTTTT+AGG | - | chr3_3:2370053-2370072 | Msa0438210:intron | 30.0% |
| ! | ACTAACTTTCCCTTTTAACA+GGG | - | chr3_3:2370141-2370160 | Msa0438210:intron | 30.0% |
| GATTTGATTAATGTCAGATG+AGG | - | chr3_3:2370236-2370255 | Msa0438210:intron | 30.0% | |
| CTCATAATAGGGTATACAAA+AGG | + | chr3_3:2370390-2370409 | None:intergenic | 30.0% | |
| !!! | CTTCTTATTTTGCAAAATGC+AGG | - | chr3_3:2370414-2370433 | Msa0438210:intron | 30.0% |
| CAAGAGGTAATTAAGACATT+AGG | - | chr3_3:2370514-2370533 | Msa0438210:intron | 30.0% | |
| ! | ACTTTGAGGATAAGTTTGTT+CGG | - | chr3_3:2370937-2370956 | Msa0438210:intron | 30.0% |
| TGTCAAATACAACTAATGGT+AGG | - | chr3_3:2371099-2371118 | Msa0438210:CDS | 30.0% | |
| AACCGATATCAATCAATGTA+AGG | + | chr3_3:2371219-2371238 | None:intergenic | 30.0% | |
| ! | GCATATGCAATATTTTGTAC+AGG | - | chr3_3:2371267-2371286 | Msa0438210:CDS | 30.0% |
| ! | AATATTTTGTACAGGCAAGT+GGG | - | chr3_3:2371275-2371294 | Msa0438210:CDS | 30.0% |
| ! | ATCACAAGTTGAACGAATAT+TGG | - | chr3_3:2371316-2371335 | Msa0438210:CDS | 30.0% |
| GAATTTCCTTCACAACATAA+AGG | - | chr3_3:2371338-2371357 | Msa0438210:CDS | 30.0% | |
| ATGTATCCTTTATGTTGTGA+AGG | + | chr3_3:2371347-2371366 | None:intergenic | 30.0% | |
| CCAATGTAGATAAATACACT+GGG | + | chr3_3:2371388-2371407 | None:intergenic | 30.0% | |
| ACCAATGTAGATAAATACAC+TGG | + | chr3_3:2371389-2371408 | None:intergenic | 30.0% | |
| ATGTATTTCAAATGTTGCAG+TGG | - | chr3_3:2371518-2371537 | Msa0438210:CDS | 30.0% | |
| TTGTACGCATACTTACTGAA+AGG | + | chr3_3:2368104-2368123 | None:intergenic | 35.0% | |
| TTTCAGTAAGTATGCGTACA+AGG | - | chr3_3:2368103-2368122 | Msa0438210:three_prime_UTR | 35.0% | |
| TTCAGTAAGTATGCGTACAA+GGG | - | chr3_3:2368104-2368123 | Msa0438210:three_prime_UTR | 35.0% | |
| !! | TCTTACAAAGAGTGTTGTTG+AGG | - | chr3_3:2368133-2368152 | Msa0438210:three_prime_UTR | 35.0% |
| ! | GAAAATCGAAGAGTGTAAAG+TGG | - | chr3_3:2368199-2368218 | Msa0438210:three_prime_UTR | 35.0% |
| ! | GAAAGTTGAAGAGTGTAAAG+TGG | - | chr3_3:2368256-2368275 | Msa0438210:three_prime_UTR | 35.0% |
| ! | CTTCCTCCTAAGATTTTCAA+TGG | - | chr3_3:2368443-2368462 | Msa0438210:intron | 35.0% |
| ! | TTCCTAGGCTTTTCAACTTT+CGG | + | chr3_3:2368482-2368501 | None:intergenic | 35.0% |
| CATCTATCAGCCTTAAGAAA+AGG | + | chr3_3:2368524-2368543 | None:intergenic | 35.0% | |
| TTCTTAAGGCTGATAGATGT+AGG | - | chr3_3:2368525-2368544 | Msa0438210:intron | 35.0% | |
| TCTTAAGGCTGATAGATGTA+GGG | - | chr3_3:2368526-2368545 | Msa0438210:intron | 35.0% | |
| AGCTTACATAAGGAAAACAC+CGG | - | chr3_3:2368550-2368569 | Msa0438210:intron | 35.0% | |
| GGAAAACACCGGATAATAAT+TGG | - | chr3_3:2368561-2368580 | Msa0438210:intron | 35.0% | |
| TTCATCGTAAAGAAGAACAG+TGG | - | chr3_3:2369097-2369116 | Msa0438210:CDS | 35.0% | |
| ! | TGAAAATGTTGGGCATTGTT+TGG | + | chr3_3:2369362-2369381 | None:intergenic | 35.0% |
| !!! | CGGAACTGTTTTGAAAATGT+TGG | + | chr3_3:2369373-2369392 | None:intergenic | 35.0% |
| !! | CAGTTCCGTTTTGGATATAA+TGG | - | chr3_3:2369385-2369404 | Msa0438210:intron | 35.0% |
| TGCTGCCATTATATCCAAAA+CGG | + | chr3_3:2369393-2369412 | None:intergenic | 35.0% | |
| !!! | CAGTTCAGTTTTGGATTTAG+TGG | - | chr3_3:2369442-2369461 | Msa0438210:intron | 35.0% |
| TAGTGGCAGCTTACAATTAA+TGG | - | chr3_3:2369459-2369478 | Msa0438210:intron | 35.0% | |
| ACAACTCTTTGCGACATTAT+CGG | - | chr3_3:2369577-2369596 | Msa0438210:intron | 35.0% | |
| TAAATCACGGCAAAAATGAG+GGG | + | chr3_3:2370039-2370058 | None:intergenic | 35.0% | |
| GTTAAATCACGGCAAAAATG+AGG | + | chr3_3:2370041-2370060 | None:intergenic | 35.0% | |
| ! | GACTAACTTTCCCTTTTAAC+AGG | - | chr3_3:2370140-2370159 | Msa0438210:intron | 35.0% |
| TTGATTAATGTCAGATGAGG+TGG | - | chr3_3:2370239-2370258 | Msa0438210:intron | 35.0% | |
| !! | CAAGTGTTGCATTTTTGCTT+TGG | - | chr3_3:2370333-2370352 | Msa0438210:intron | 35.0% |
| ACCAAAAGAGGAAATACAAG+AGG | - | chr3_3:2370498-2370517 | Msa0438210:intron | 35.0% | |
| ! | ACCTCTTGTATTTCCTCTTT+TGG | + | chr3_3:2370502-2370521 | None:intergenic | 35.0% |
| CATTAGGTCTTCAAGTGAAA+AGG | - | chr3_3:2370530-2370549 | Msa0438210:intron | 35.0% | |
| GAAACATCGTCTCTATATCA+GGG | + | chr3_3:2370874-2370893 | None:intergenic | 35.0% | |
| AGAAACATCGTCTCTATATC+AGG | + | chr3_3:2370875-2370894 | None:intergenic | 35.0% | |
| AATCAAGGGACTAAGTTACT+TGG | - | chr3_3:2371144-2371163 | Msa0438210:CDS | 35.0% | |
| AGTTACTTGGAAAAAACCAG+AGG | - | chr3_3:2371157-2371176 | Msa0438210:CDS | 35.0% | |
| GTTACTTGGAAAAAACCAGA+GGG | - | chr3_3:2371158-2371177 | Msa0438210:CDS | 35.0% | |
| TTACTTGGAAAAAACCAGAG+GGG | - | chr3_3:2371159-2371178 | Msa0438210:CDS | 35.0% | |
| ! | CAATATTTTGTACAGGCAAG+TGG | - | chr3_3:2371274-2371293 | Msa0438210:CDS | 35.0% |
| CCCAGTGTATTTATCTACAT+TGG | - | chr3_3:2371385-2371404 | Msa0438210:CDS | 35.0% | |
| ! | CAAAGCTCTGACATATATGT+TGG | - | chr3_3:2371547-2371566 | Msa0438210:CDS | 35.0% |
| !! | TACAAAGAGTGTTGTTGAGG+TGG | - | chr3_3:2368136-2368155 | Msa0438210:three_prime_UTR | 40.0% |
| ! | TAAAGTGGAGCATCCACAAA+GGG | - | chr3_3:2368271-2368290 | Msa0438210:exon | 40.0% |
| ! | GGAAGTTGAAGAGTGTAATG+TGG | - | chr3_3:2368313-2368332 | Msa0438210:CDS | 40.0% |
| GAGCCATTGAAAATCTTAGG+AGG | + | chr3_3:2368449-2368468 | None:intergenic | 40.0% | |
| CGAGAGCCATTGAAAATCTT+AGG | + | chr3_3:2368452-2368471 | None:intergenic | 40.0% | |
| GATGTAGGGAAGCTTACATA+AGG | - | chr3_3:2368540-2368559 | Msa0438210:intron | 40.0% | |
| CACGGAAATGATACTCTTGA+AGG | + | chr3_3:2368628-2368647 | None:intergenic | 40.0% | |
| AGTATCATTTCCGTGATCCA+TGG | - | chr3_3:2368633-2368652 | Msa0438210:intron | 40.0% | |
| CATATAACAATCACCCTCCA+TGG | + | chr3_3:2368653-2368672 | None:intergenic | 40.0% | |
| AGGGAGGATTCGATCAAAAT+TGG | + | chr3_3:2369731-2369750 | None:intergenic | 40.0% | |
| TCATGTAATAGGTCAAGGGA+GGG | + | chr3_3:2369750-2369769 | None:intergenic | 40.0% | |
| TTCATGTAATAGGTCAAGGG+AGG | + | chr3_3:2369751-2369770 | None:intergenic | 40.0% | |
| GATCACGTATAGGACAGTTA+TGG | + | chr3_3:2369781-2369800 | None:intergenic | 40.0% | |
| ! | TCTGCTGTGATATGCTTTTG+CGG | - | chr3_3:2369851-2369870 | Msa0438210:intron | 40.0% |
| TTTAGGGATGCCTCAGATTT+AGG | - | chr3_3:2370070-2370089 | Msa0438210:intron | 40.0% | |
| TCAATGACACGCAAGATGTT+GGG | + | chr3_3:2370313-2370332 | None:intergenic | 40.0% | |
| TTGCATGCAAGTACCAAAAG+AGG | - | chr3_3:2370486-2370505 | Msa0438210:intron | 40.0% | |
| CTTTCTCGTGAATACTTAGC+CGG | - | chr3_3:2370571-2370590 | Msa0438210:intron | 40.0% | |
| TTTCTCGTGAATACTTAGCC+GGG | - | chr3_3:2370572-2370591 | Msa0438210:intron | 40.0% | |
| !!! | ATCGGTTGTCGCTTTTAATC+AGG | - | chr3_3:2371232-2371251 | Msa0438210:CDS | 40.0% |
| !!! | GTCGCTTTTAATCAGGTATG+CGG | - | chr3_3:2371239-2371258 | Msa0438210:CDS | 40.0% |
| TCGTTCAACTTGTGATCATG+AGG | + | chr3_3:2371312-2371331 | None:intergenic | 40.0% | |
| ! | AGCTCTGACATATATGTTGG+AGG | - | chr3_3:2371550-2371569 | Msa0438210:CDS | 40.0% |
| ! | TAAAGTGGAGCATCCAGAGA+GGG | - | chr3_3:2368214-2368233 | Msa0438210:three_prime_UTR | 45.0% |
| ! | GTAAAGTGGAGCATCCACAA+AGG | - | chr3_3:2368270-2368289 | Msa0438210:exon | 45.0% |
| !!! | GGTCGTGTCTCCTTATTTTC+AGG | - | chr3_3:2368235-2368254 | Msa0438210:three_prime_UTR | 45.0% |
| ! | TAATGTGGAGCATCCACAGA+GGG | - | chr3_3:2368328-2368347 | Msa0438210:CDS | 45.0% |
| GACCGAAAGTTGAAAAGCCT+AGG | - | chr3_3:2368477-2368496 | Msa0438210:intron | 45.0% | |
| !! | GGAGGCACCCAATTATTATC+CGG | + | chr3_3:2368572-2368591 | None:intergenic | 45.0% |
| ATCATTTCCGTGATCCATGG+AGG | - | chr3_3:2368636-2368655 | Msa0438210:intron | 45.0% | |
| TCATTTCCGTGATCCATGGA+GGG | - | chr3_3:2368637-2368656 | Msa0438210:intron | 45.0% | |
| ATGCTACTGAACCGCACTAA+AGG | - | chr3_3:2368674-2368693 | Msa0438210:intron | 45.0% | |
| GTACCTGTTCACCTTTAGTG+CGG | + | chr3_3:2368688-2368707 | None:intergenic | 45.0% | |
| AAAGAAGAACAGTGGCACAG+TGG | - | chr3_3:2369105-2369124 | Msa0438210:CDS | 45.0% | |
| CTGCTCTGCAATACTCTGTT+TGG | - | chr3_3:2369172-2369191 | Msa0438210:CDS | 45.0% | |
| CTGCAATACTCTGTTTGGAC+AGG | - | chr3_3:2369177-2369196 | Msa0438210:CDS | 45.0% | |
| AGACCAAGCTCTTGATTCTC+GGG | + | chr3_3:2369689-2369708 | None:intergenic | 45.0% | |
| GAGACCAAGCTCTTGATTCT+CGG | + | chr3_3:2369690-2369709 | None:intergenic | 45.0% | |
| AGGCATCCCTAAAAAGTCGA+TGG | + | chr3_3:2370063-2370082 | None:intergenic | 45.0% | |
| TGCCTCAGATTTAGGCAATG+TGG | - | chr3_3:2370078-2370097 | Msa0438210:intron | 45.0% | |
| GCCTCAGATTTAGGCAATGT+GGG | - | chr3_3:2370079-2370098 | Msa0438210:intron | 45.0% | |
| ACCCACATTGCCTAAATCTG+AGG | + | chr3_3:2370083-2370102 | None:intergenic | 45.0% | |
| GTCAATGACACGCAAGATGT+TGG | + | chr3_3:2370314-2370333 | None:intergenic | 45.0% | |
| TGCATGCAAGTTTCTGCGTT+TGG | + | chr3_3:2370475-2370494 | None:intergenic | 45.0% | |
| CGGCTAAGTATTCACGAGAA+AGG | + | chr3_3:2370573-2370592 | None:intergenic | 45.0% | |
| !! | ATATGCAATTTTGGCCCCTC+TGG | + | chr3_3:2371176-2371195 | None:intergenic | 45.0% |
| GTGAAGGGAAAACTATGGTG+AGG | - | chr3_3:2371456-2371475 | Msa0438210:CDS | 45.0% | |
| !! | AATTTATTATAATAATTTGA+GGG | + | chr3_3:2370808-2370827 | None:intergenic | 5.0% |
| ! | AGGTGGATTCTTGTCGTGCT+AGG | - | chr3_3:2368153-2368172 | Msa0438210:three_prime_UTR | 50.0% |
| GGATTCTTGTCGTGCTAGGA+AGG | - | chr3_3:2368157-2368176 | Msa0438210:three_prime_UTR | 50.0% | |
| ! | GTAAAGTGGAGCATCCAGAG+AGG | - | chr3_3:2368213-2368232 | Msa0438210:three_prime_UTR | 50.0% |
| TAAGGAGACACGACCCTTTG+TGG | + | chr3_3:2368287-2368306 | None:intergenic | 50.0% | |
| ! | GTAATGTGGAGCATCCACAG+AGG | - | chr3_3:2368327-2368346 | Msa0438210:CDS | 50.0% |
| ! | AGACGCTTTTCAACGAGAGG+AGG | + | chr3_3:2368605-2368624 | None:intergenic | 50.0% |
| ! | AGGAGACGCTTTTCAACGAG+AGG | + | chr3_3:2368608-2368627 | None:intergenic | 50.0% |
| CAATCACCCTCCATGGATCA+CGG | + | chr3_3:2368646-2368665 | None:intergenic | 50.0% | |
| GAACCGCACTAAAGGTGAAC+AGG | - | chr3_3:2368682-2368701 | Msa0438210:intron | 50.0% | |
| CAAGCTCTTGATTCTCGGGT+AGG | + | chr3_3:2369685-2369704 | None:intergenic | 50.0% | |
| CTACCCGAGAATCAAGAGCT+TGG | - | chr3_3:2369683-2369702 | Msa0438210:intron | 50.0% | |
| TGTAATAGGTCAAGGGAGGG+AGG | + | chr3_3:2369747-2369766 | None:intergenic | 50.0% | |
| GTGAATACTTAGCCGGGACT+TGG | - | chr3_3:2370578-2370597 | Msa0438210:intron | 50.0% | |
| AGTCACATACGTCCAAGTCC+CGG | + | chr3_3:2370593-2370612 | None:intergenic | 50.0% | |
| GTGACTGAACTGCACAGTGT+TGG | - | chr3_3:2370607-2370626 | Msa0438210:intron | 50.0% | |
| TGTTCGGAGACAAGCGAACA+TGG | - | chr3_3:2370953-2370972 | Msa0438210:CDS | 50.0% | |
| CCTTTAATGGTCGACTGCTG+CGG | - | chr3_3:2371434-2371453 | Msa0438210:CDS | 50.0% | |
| CTGCGGTGAAGGGAAAACTA+TGG | - | chr3_3:2371451-2371470 | Msa0438210:CDS | 50.0% | |
| GGGAAAACTATGGTGAGGCA+TGG | - | chr3_3:2371461-2371480 | Msa0438210:CDS | 50.0% | |
| TAAGGAGACACGACCCTCTC+TGG | + | chr3_3:2368230-2368249 | None:intergenic | 55.0% | |
| ! | AGAGGAGGTGTAGAACGTGG+AGG | + | chr3_3:2368590-2368609 | None:intergenic | 55.0% |
| ! | ACGAGAGGAGGTGTAGAACG+TGG | + | chr3_3:2368593-2368612 | None:intergenic | 55.0% |
| CCGCAGCAGTCGACCATTAA+AGG | + | chr3_3:2371437-2371456 | None:intergenic | 55.0% | |
| GAACGAGACACGACCCTCTG+TGG | + | chr3_3:2368344-2368363 | None:intergenic | 60.0% | |
| ATGGTCGACTGCTGCGGTGA+AGG | - | chr3_3:2371440-2371459 | Msa0438210:CDS | 60.0% | |
| TGGTCGACTGCTGCGGTGAA+GGG | - | chr3_3:2371441-2371460 | Msa0438210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 2368051 | 2371598 | 2368051 | ID=Msa0438210;Name=Msa0438210 |
| chr3_3 | mRNA | 2368051 | 2371598 | 2368051 | ID=Msa0438210-mRNA-1;Parent=Msa0438210;Name=Msa0438210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=8|1|1|1|1|1|3|227|319 |
| chr3_3 | exon | 2368051 | 2368395 | 2368051 | ID=Msa0438210-mRNA-1:exon:561;Parent=Msa0438210-mRNA-1 |
| chr3_3 | exon | 2369017 | 2369213 | 2369017 | ID=Msa0438210-mRNA-1:exon:560;Parent=Msa0438210-mRNA-1 |
| chr3_3 | exon | 2370946 | 2371598 | 2370946 | ID=Msa0438210-mRNA-1:exon:559;Parent=Msa0438210-mRNA-1 |
| chr3_3 | five_prime_UTR | 2371591 | 2371598 | 2371591 | ID=Msa0438210-mRNA-1:five_prime_utr;Parent=Msa0438210-mRNA-1 |
| chr3_3 | CDS | 2370946 | 2371590 | 2370946 | ID=Msa0438210-mRNA-1:cds;Parent=Msa0438210-mRNA-1 |
| chr3_3 | CDS | 2369017 | 2369213 | 2369017 | ID=Msa0438210-mRNA-1:cds;Parent=Msa0438210-mRNA-1 |
| chr3_3 | CDS | 2368278 | 2368395 | 2368278 | ID=Msa0438210-mRNA-1:cds;Parent=Msa0438210-mRNA-1 |
| chr3_3 | three_prime_UTR | 2368051 | 2368277 | 2368051 | ID=Msa0438210-mRNA-1:three_prime_utr;Parent=Msa0438210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
