AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0948030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948030 MtrunA17_Chr6g0462641 85.455 605 88 0 7 611 69 673 0.0 1059
Msa0948030 MtrunA17_Chr6g0462711 85.075 603 90 0 7 609 71 673 0.0 1055
Msa0948030 MtrunA17_Chr6g0462771 83.099 568 96 0 7 574 69 636 0.0 969
Msa0948030 MtrunA17_Chr6g0462681 73.167 600 156 1 7 606 69 663 0.0 879
Msa0948030 MtrunA17_Chr6g0462611 71.761 602 163 2 5 606 17 611 0.0 866
Msa0948030 MtrunA17_Chr6g0462601 69.565 552 163 1 7 558 69 615 0.0 768
Msa0948030 MtrunA17_Chr7g0223181 63.406 552 196 2 10 560 72 618 0.0 697
Msa0948030 MtrunA17_Chr4g0031301 62.500 552 201 2 10 560 72 618 0.0 691
Msa0948030 MtrunA17_Chr7g0262821 62.862 552 199 2 10 560 72 618 0.0 691
Msa0948030 MtrunA17_Chr7g0223291 62.681 552 200 2 10 560 72 618 0.0 690
Msa0948030 MtrunA17_Chr4g0031321 62.138 552 203 2 10 560 72 618 0.0 686
Msa0948030 MtrunA17_Chr4g0073741 62.000 550 203 2 10 558 71 615 0.0 677
Msa0948030 MtrunA17_Chr6g0462861 58.604 616 220 10 7 611 60 651 0.0 657
Msa0948030 MtrunA17_Chr7g0223711 58.674 513 206 2 10 522 74 580 0.0 604
Msa0948030 MtrunA17_Chr7g0223751 57.505 513 211 3 10 522 74 579 0.0 591
Msa0948030 MtrunA17_Chr7g0223741 56.983 537 220 3 7 543 71 596 0.0 590
Msa0948030 MtrunA17_Chr7g0223541 54.741 559 245 3 2 558 21 573 0.0 573
Msa0948030 MtrunA17_Chr7g0223731 54.015 548 245 3 10 557 74 614 0.0 566
Msa0948030 MtrunA17_Chr7g0233311 55.075 532 232 3 10 540 74 599 0.0 564
Msa0948030 MtrunA17_Chr5g0427901 53.982 565 241 5 7 559 71 628 0.0 560
Msa0948030 MtrunA17_Chr8g0350731 56.977 516 215 3 7 522 99 607 0.0 559
Msa0948030 MtrunA17_Chr7g0223031 55.556 513 221 3 10 522 74 579 0.0 558
Msa0948030 MtrunA17_Chr2g0293581 56.130 522 222 3 10 530 75 590 0.0 556
Msa0948030 MtrunA17_Chr2g0298851 55.354 551 235 7 10 557 74 616 0.0 555
Msa0948030 MtrunA17_Chr7g0223851 54.953 535 233 4 7 540 80 607 0.0 555
Msa0948030 MtrunA17_Chr7g0221661 53.176 551 250 4 7 556 71 614 0.0 554
Msa0948030 MtrunA17_Chr7g0223801 52.518 556 250 5 7 559 71 615 0.0 551
Msa0948030 MtrunA17_Chr7g0223701 52.166 577 256 7 7 572 71 638 0.0 551
Msa0948030 MtrunA17_Chr7g0223621 54.894 521 228 3 10 530 74 587 0.0 551
Msa0948030 MtrunA17_Chr7g0248151 55.126 517 224 4 7 522 71 580 0.0 547
Msa0948030 MtrunA17_Chr7g0248131 55.534 515 220 5 10 522 75 582 0.0 545
Msa0948030 MtrunA17_Chr2g0298861 52.622 553 252 6 10 559 85 630 0.0 545
Msa0948030 MtrunA17_Chr2g0287631 54.167 552 245 4 10 559 74 619 0.0 543
Msa0948030 MtrunA17_Chr7g0225671 54.667 525 229 5 7 530 78 594 0.0 541
Msa0948030 MtrunA17_Chr7g0223721 54.580 524 230 4 10 532 74 590 0.0 541
Msa0948030 MtrunA17_Chr7g0223681 56.250 496 210 3 27 522 2 490 0.0 541
Msa0948030 MtrunA17_Chr7g0223631 55.233 516 210 6 7 522 71 565 0.0 538
Msa0948030 MtrunA17_Chr7g0223781 56.031 514 216 3 7 519 71 575 0.0 536
Msa0948030 MtrunA17_Chr4g0040931 53.700 527 236 4 7 532 71 590 0.0 536
Msa0948030 MtrunA17_Chr2g0284681 51.667 540 239 5 7 541 68 590 0.0 535
Msa0948030 MtrunA17_Chr4g0012541 54.493 523 230 4 19 540 74 589 0.0 532
Msa0948030 MtrunA17_Chr8g0388761 50.820 549 258 6 10 555 101 640 0.0 529
Msa0948030 MtrunA17_Chr8g0388671 50.820 549 258 6 10 555 101 640 2.43e-180 526
Msa0948030 MtrunA17_Chr2g0296391 56.466 464 195 3 7 469 71 528 6.25e-177 512
Msa0948030 MtrunA17_Chr7g0233301 51.537 553 229 5 7 557 71 586 9.98e-177 513
Msa0948030 MtrunA17_Chr7g0223821 54.442 529 230 5 7 532 71 591 5.76e-175 513
Msa0948030 MtrunA17_Chr7g0217971 52.672 524 217 5 7 530 71 563 6.57e-173 504
Msa0948030 MtrunA17_Chr8g0390821 49.094 552 250 5 19 559 124 655 8.52e-164 483
Msa0948030 MtrunA17_Chr7g0215261 49.153 531 226 6 10 538 74 562 2.22e-157 464
Msa0948030 MtrunA17_Chr7g0223831 49.440 536 233 7 7 540 71 570 6.22e-157 463
Msa0948030 MtrunA17_Chr7g0228281 47.300 537 226 4 7 540 132 614 1.16e-153 456
Msa0948030 MtrunA17_Chr2g0293601 52.863 454 173 4 7 459 71 484 4.45e-148 436
Msa0948030 MtrunA17_Chr2g0331381 48.770 488 177 7 7 494 68 482 1.42e-141 420
Msa0948030 MtrunA17_Chr2g0299821 49.791 478 175 8 7 481 69 484 1.54e-138 412
Msa0948030 MtrunA17_Chr6g0462631 63.205 337 75 3 24 358 8 297 1.28e-133 392
Msa0948030 MtrunA17_Chr2g0299921 65.653 329 106 2 7 335 1089 1410 1.06e-132 427
Msa0948030 MtrunA17_Chr2g0299921 65.538 325 104 3 7 330 1473 1790 2.13e-122 398
Msa0948030 MtrunA17_Chr2g0299791 64.615 325 108 2 7 331 1102 1419 5.67e-132 420
Msa0948030 MtrunA17_Chr6g0462751 61.095 347 71 4 9 353 18 302 2.92e-129 382
Msa0948030 MtrunA17_Chr2g0299851 62.385 327 116 2 7 333 1098 1417 2.35e-128 410
Msa0948030 MtrunA17_Chr2g0293561 60.194 309 118 1 7 315 71 374 1.45e-126 378
Msa0948030 MtrunA17_Chr2g0279901 41.326 513 265 9 11 518 121 602 5.02e-124 381
Msa0948030 MtrunA17_Chr1g0166551 42.703 555 221 9 5 557 42 501 1.13e-121 369
Msa0948030 MtrunA17_Chr4g0049501 40.310 516 281 10 12 522 119 612 3.78e-120 371
Msa0948030 MtrunA17_Chr2g0299881 59.878 329 121 3 7 331 1098 1419 3.93e-116 377
Msa0948030 MtrunA17_Chr2g0299881 62.121 66 21 1 121 186 1414 1475 7.47e-16 81.6
Msa0948030 MtrunA17_Chr2g0277021 40.430 512 279 9 12 518 137 627 1.53e-112 352
Msa0948030 MtrunA17_Chr2g0293271 47.826 391 128 3 7 397 93 407 6.78e-108 331
Msa0948030 MtrunA17_Chr6g0462791 85.876 177 24 1 45 221 2 177 7.80e-102 306
Msa0948030 MtrunA17_Chr1g0151991 62.896 221 82 0 7 227 71 291 8.44e-93 287
Msa0948030 MtrunA17_Chr7g0245521 67.980 203 65 0 7 209 71 273 5.48e-92 285
Msa0948030 MtrunA17_Chr7g0223671 69.681 188 57 0 10 197 8 195 3.89e-88 272
Msa0948030 MtrunA17_Chr1g0188601 65.608 189 65 0 30 218 3 191 7.29e-82 255
Msa0948030 MtrunA17_Chr7g0223761 42.192 365 162 4 177 541 3 318 5.79e-80 256
Msa0948030 MtrunA17_Chr6g0462701 68.649 185 32 2 24 206 8 168 7.73e-79 246
Msa0948030 MtrunA17_Chr7g0245531 44.688 320 169 4 240 558 1 313 1.51e-74 241
Msa0948030 MtrunA17_Chr1g0152001 43.492 315 169 5 251 564 1 307 8.53e-70 228
Msa0948030 MtrunA17_Chr7g0223771 66.447 152 51 0 30 181 2 153 2.71e-64 208
Msa0948030 MtrunA17_Chr2g0331901 35.638 376 217 7 12 372 68 433 1.22e-63 225
Msa0948030 MtrunA17_Chr4g0004331 35.200 375 218 7 12 371 68 432 1.16e-61 219
Msa0948030 MtrunA17_Chr5g0394391 31.839 446 279 12 4 436 88 521 1.04e-59 209
Msa0948030 MtrunA17_Chr7g0223861 70.229 131 39 0 14 144 4 134 1.43e-58 192
Msa0948030 MtrunA17_Chr5g0444001 33.515 367 230 4 12 372 68 426 2.87e-58 204
Msa0948030 MtrunA17_Chr6g0462691 66.667 147 44 1 258 404 1 142 1.40e-57 191
Msa0948030 MtrunA17_Chr4g0046881 63.830 141 48 1 71 211 14 151 5.58e-55 183
Msa0948030 MtrunA17_Chr1g0188611 46.350 274 132 6 258 530 1 260 2.53e-54 186
Msa0948030 MtrunA17_Chr3g0098761 31.129 363 240 4 12 373 68 421 7.72e-53 193
Msa0948030 MtrunA17_Chr5g0394221 34.667 300 180 7 236 531 70 357 8.16e-47 168
Msa0948030 MtrunA17_Chr4g0060241 30.637 408 239 11 54 439 122 507 1.10e-43 164
Msa0948030 MtrunA17_Chr3g0120101 28.571 364 229 7 55 397 137 490 1.85e-42 164
Msa0948030 MtrunA17_Chr4g0064621 31.151 443 275 12 4 429 205 634 5.13e-42 161
Msa0948030 MtrunA17_Chr5g0394231 37.168 226 91 4 10 234 5 180 4.43e-39 142
Msa0948030 MtrunA17_Chr7g0245541 37.811 201 123 2 359 558 1 200 1.62e-31 121
Msa0948030 MtrunA17_Chr5g0442171 29.377 337 207 13 106 429 1 319 3.71e-30 121
Msa0948030 MtrunA17_Chr6g0462801 83.333 66 11 0 258 323 1 66 4.54e-29 110
Msa0948030 MtrunA17_Chr4g0046871 53.774 106 43 2 272 377 6 105 1.16e-27 107
Msa0948030 MtrunA17_Chr6g0481391 59.551 89 36 0 7 95 43 131 2.07e-27 107
Msa0948030 MtrunA17_Chr7g0221651 49.412 85 43 0 151 235 1 85 3.15e-22 91.3
Msa0948030 MtrunA17_Chr6g0481381 59.459 74 30 0 112 185 1 74 6.09e-21 90.9
Msa0948030 MtrunA17_Chr7g0223791 56.250 80 22 4 4 72 13 90 2.64e-17 80.1
Msa0948030 MtrunA17_Chr2g0284661 51.807 83 40 0 309 391 61 143 3.14e-17 79.0
Msa0948030 MtrunA17_Chr7g0223881 46.753 77 40 1 224 300 9 84 1.40e-15 72.4
Msa0948030 MtrunA17_Chr2g0299891 62.791 43 16 0 251 293 1 43 1.07e-12 63.5
Msa0948030 MtrunA17_Chr7g0223871 37.037 108 68 0 433 540 7 114 2.95e-12 64.7
Msa0948030 MtrunA17_Chr4g0064651 37.895 95 56 2 339 432 29 121 1.12e-11 62.4
Msa0948030 MtrunA17_Chr2g0299941 47.458 59 31 0 342 400 24 82 6.69e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948030 AT3G12580.1 62.366 558 204 2 10 566 72 624 0.0 693
Msa0948030 AT5G02500.1 62.862 552 199 2 10 560 72 618 0.0 691
Msa0948030 AT5G02490.1 62.319 552 202 2 10 560 72 618 0.0 685
Msa0948030 AT3G09440.1 61.594 552 206 2 10 560 72 618 0.0 678
Msa0948030 AT3G09440.4 61.594 552 206 2 10 560 72 618 0.0 678
Msa0948030 AT3G09440.2 61.594 552 206 2 10 560 72 618 0.0 678
Msa0948030 AT3G09440.3 61.594 552 206 2 10 560 72 618 0.0 678
Msa0948030 AT1G16030.1 60.870 552 210 2 10 560 71 617 0.0 677
Msa0948030 AT1G56410.1 60.688 552 209 3 10 560 72 616 0.0 660
Msa0948030 AT5G28540.1 50.273 549 261 6 10 555 100 639 0.0 530
Msa0948030 AT5G42020.1 49.727 549 264 6 10 555 100 639 1.75e-180 526
Msa0948030 AT5G42020.3 49.727 549 264 6 10 555 105 644 7.46e-180 525
Msa0948030 AT1G09080.2 50.365 548 261 5 10 555 105 643 5.64e-173 507
Msa0948030 AT1G09080.1 50.365 548 261 5 10 555 115 653 6.80e-173 507
Msa0948030 AT5G02500.2 69.817 328 94 1 10 337 72 394 2.31e-157 462
Msa0948030 AT5G02500.2 47.573 103 54 0 458 560 386 488 2.75e-21 98.2
Msa0948030 AT5G42020.2 49.057 477 231 6 10 483 100 567 2.04e-144 432
Msa0948030 AT5G09590.1 41.247 497 267 8 12 503 125 601 1.52e-120 373
Msa0948030 AT4G37910.1 41.326 513 266 10 11 518 119 601 1.01e-114 357
Msa0948030 AT4G37910.2 41.326 513 266 10 11 518 119 601 1.01e-114 357
Msa0948030 AT4G24280.1 40.194 515 276 10 12 518 146 636 1.94e-113 355
Msa0948030 AT5G49910.1 40.625 512 278 9 12 518 146 636 8.83e-112 351
Msa0948030 AT1G11660.2 30.601 549 298 13 12 499 31 557 3.13e-67 233
Msa0948030 AT1G11660.4 30.601 549 298 13 12 499 68 594 9.84e-67 232
Msa0948030 AT1G11660.3 30.601 549 298 13 12 499 68 594 9.84e-67 232
Msa0948030 AT1G11660.1 30.601 549 298 13 12 499 68 594 9.84e-67 232
Msa0948030 AT1G79930.2 32.533 375 228 5 12 371 68 432 7.58e-61 216
Msa0948030 AT1G79930.1 32.533 375 228 5 12 371 68 432 7.76e-61 217
Msa0948030 AT1G79920.1 33.067 375 226 6 12 371 68 432 2.73e-60 214
Msa0948030 AT1G79920.3 33.067 375 226 6 12 371 68 432 3.84e-60 214
Msa0948030 AT1G79920.2 33.067 375 226 6 12 371 68 432 3.84e-60 214
Msa0948030 AT1G79920.4 33.067 375 226 6 12 371 68 432 3.84e-60 214
Msa0948030 AT2G32120.1 31.724 435 267 11 12 436 97 511 6.66e-53 190
Msa0948030 AT2G32120.2 31.724 435 267 11 12 436 97 511 6.66e-53 190
Msa0948030 AT4G16660.1 28.571 385 242 9 32 395 115 487 9.02e-45 171
Msa0948030 AT4G16660.2 28.571 385 242 9 32 395 139 511 9.88e-45 171

Find 126 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATAATATGTTCCATATT+TGG 0.158546 6_3:-31695850 Msa0948030:CDS
CAATCTTGGGTTTGTCATTC+AGG 0.164292 6_3:+31697549 None:intergenic
TGATTTCTTTGGAATTAAAA+AGG 0.174810 6_3:-31696778 Msa0948030:CDS
AGATGCCGTCATCGTTAATT+TGG 0.182126 6_3:+31696385 None:intergenic
TTTATCATCTTTATAATAAC+TGG 0.184904 6_3:+31696006 None:intergenic
CTTCACATCACTTTGTACTA+TGG 0.218734 6_3:+31697598 None:intergenic
TCAAGAACTCTTTCACAAAA+TGG 0.228946 6_3:+31697114 None:intergenic
TTTCTACATCCATGATTAAA+TGG 0.230034 6_3:+31697272 None:intergenic
CATCTTAGATGTCTCTGTTT+TGG 0.237315 6_3:-31696367 Msa0948030:CDS
CGAGATGCGGGTGCTATTGC+TGG 0.247069 6_3:-31697362 Msa0948030:CDS
ATCAATGTTAAGGCCATTAA+TGG 0.251715 6_3:-31697182 Msa0948030:CDS
CCGATATCACTAACCAAATA+TGG 0.253413 6_3:+31695837 None:intergenic
CTCAATGGTAGTCTCATTAT+TGG 0.265538 6_3:+31697004 None:intergenic
AAGACTTGGGGATTGATAAA+AGG 0.272646 6_3:-31696341 Msa0948030:CDS
TTGTGGCCATTCAAAGTAAT+TGG 0.308051 6_3:-31697575 Msa0948030:CDS
GATCAATAACGCAATTGATT+TGG 0.318163 6_3:-31696112 Msa0948030:CDS
GAAAAGTGTATAGCAGATAG+TGG 0.320337 6_3:-31696879 Msa0948030:CDS
AAGCATAAACTGGACATTAA+TGG 0.323307 6_3:-31697089 Msa0948030:CDS
TTTATAGTTAACAACAATCT+TGG 0.329217 6_3:+31697535 None:intergenic
TCCCTTGGAATTGAATTAGA+AGG 0.329387 6_3:-31696618 Msa0948030:CDS
AACAAGATGTTGAATGTTAC+AGG 0.341170 6_3:-31696053 Msa0948030:CDS
GTAGATGCAAAGAGGCTAAT+TGG 0.349795 6_3:-31697638 Msa0948030:intron
TGGAAATTGACCATGAATCT+AGG 0.360084 6_3:+31696405 None:intergenic
TACCACGATTCCTACCAATA+TGG 0.365336 6_3:-31696565 Msa0948030:CDS
GAGGTGAGTGTTTCCATTAA+TGG 0.365592 6_3:+31697169 None:intergenic
TACTTGTTGGCGGCTCTACC+AGG 0.374585 6_3:-31696827 Msa0948030:CDS
AGGTCGCCAATTACTTTGAA+TGG 0.384331 6_3:+31697569 None:intergenic
TTCAGCCTCCTAAGGGCTCT+TGG 0.391620 6_3:+31697062 None:intergenic
ACTGCAGCTGCAATTGCATA+TGG 0.397260 6_3:-31697308 Msa0948030:CDS
GTTCTTGAGAAAGCATAAAC+TGG 0.398018 6_3:-31697099 Msa0948030:CDS
GAGATAGATTGTTTATATCA+AGG 0.411404 6_3:-31696984 Msa0948030:CDS
TTATAGTTAACAACAATCTT+GGG 0.415187 6_3:+31697536 None:intergenic
GCAGATGAGGCGGTTGCATA+TGG 0.426167 6_3:-31696723 Msa0948030:CDS
AGACGTACGCATACAATATG+AGG 0.426351 6_3:-31696191 Msa0948030:CDS
AGTTATTATAAAGATGATAA+AGG 0.430494 6_3:-31696004 Msa0948030:CDS
CTAGTGTATGCAGCTGCAAC+AGG 0.436772 6_3:-31695883 Msa0948030:CDS
GAAGTCAATCCTTTGTCCCT+TGG 0.452402 6_3:-31696633 Msa0948030:CDS
GACTTGAAACCATTTAATCA+TGG 0.458525 6_3:-31697281 Msa0948030:CDS
ATTCATGATGTTGTACTTGT+TGG 0.459356 6_3:-31696840 Msa0948030:CDS
GCTGCAACAGGTGACATCGC+TGG 0.460468 6_3:-31695871 Msa0948030:CDS
TTGCAGCTGCATACACTAGC+TGG 0.462459 6_3:+31695887 None:intergenic
CCCTTGGAATTGAATTAGAA+GGG 0.465743 6_3:-31696617 Msa0948030:CDS
CAATTGATTTGGTCTTTAAG+TGG 0.466895 6_3:-31696101 Msa0948030:CDS
AAGCAGTCTTCAGCCTCCTA+AGG 0.471270 6_3:+31697054 None:intergenic
TCTATTCTCACATTTGAGAA+TGG 0.472623 6_3:-31697209 Msa0948030:CDS
AGAAATCTCATCCATGGTAT+TGG 0.472859 6_3:-31697486 Msa0948030:CDS
TTCACATCACTTTGTACTAT+GGG 0.473297 6_3:+31697599 None:intergenic
GTTTCAAGATTTGACATTGA+GGG 0.481960 6_3:-31696655 Msa0948030:CDS
ATGAATCTAGGAACACCTAC+TGG 0.484528 6_3:+31696417 None:intergenic
CCCCTTCTAATTCAATTCCA+AGG 0.488634 6_3:+31696616 None:intergenic
TGACTTAGGTGGTGGTACTT+TGG 0.488748 6_3:-31697237 Msa0948030:CDS
CATGATGTTGTACTTGTTGG+CGG 0.491200 6_3:-31696837 Msa0948030:CDS
GAATGGTGATATCAATGTTA+AGG 0.496210 6_3:-31697192 Msa0948030:CDS
GAGGGAATTCATAAATGATC+CGG 0.498186 6_3:-31696172 Msa0948030:CDS
TGGAAGAAGGTACTATGGTT+GGG 0.498306 6_3:-31695966 Msa0948030:CDS
GAGAGTCATGATGTGGAAGA+AGG 0.500125 6_3:-31695979 Msa0948030:CDS
AAAAGCTTTGAGCTAATATC+CGG 0.503920 6_3:+31696153 None:intergenic
CTGCAACAGGTGACATCGCT+GGG 0.505638 6_3:-31695870 Msa0948030:CDS
GTAGGAATCGTGGTATTCCT+AGG 0.508582 6_3:+31696573 None:intergenic
CTACCGAGAATTCCCATGCC+AGG 0.512478 6_3:-31698243 None:intergenic
CGCCAGTCTACTCGAGATGC+GGG 0.512866 6_3:-31697374 Msa0948030:CDS
TATGCAATTGCAGCTGCAGT+AGG 0.513219 6_3:+31697311 None:intergenic
TGTGTCAATTAGTGTTTATG+AGG 0.514228 6_3:-31696505 Msa0948030:CDS
AGTAGGTGTTCCTAGATTCA+TGG 0.514991 6_3:-31696415 Msa0948030:CDS
TTAATGGAAACACTCACCTC+GGG 0.518000 6_3:-31697166 Msa0948030:CDS
TCATGAGCATAATAATTCCT+AGG 0.521115 6_3:-31696590 Msa0948030:CDS
ATGGAGCTCCAAGAGCCCTT+AGG 0.524597 6_3:-31697070 Msa0948030:CDS
ATATAAACAATCTATCTCAA+TGG 0.530635 6_3:+31696989 None:intergenic
TGATGTGGAAGAAGGTACTA+TGG 0.531056 6_3:-31695971 Msa0948030:CDS
TTATCATCTTTATAATAACT+GGG 0.532361 6_3:+31696007 None:intergenic
GAGATGCGGGTGCTATTGCT+GGG 0.535258 6_3:-31697361 Msa0948030:CDS
GAGATAGCAGAAGCCTTCCT+TGG 0.535837 6_3:-31697452 Msa0948030:CDS
TGTGAGTCATTAAAGTATGC+AGG 0.543697 6_3:+31697398 None:intergenic
TTCTGCTCGGTGATTAGTCG+TGG 0.544875 6_3:-31696954 Msa0948030:CDS
CTAGGAACACCTACTGGACA+TGG 0.546248 6_3:+31696423 None:intergenic
CCCTTCTAATTCAATTCCAA+GGG 0.548495 6_3:+31696617 None:intergenic
ACTAAGGACAACAACTTGCT+AGG 0.550193 6_3:-31696468 Msa0948030:CDS
TTTCTACACTCTCCATGCAC+TGG 0.557402 6_3:+31696898 None:intergenic
AGACATGAGGCATAGGAAGA+AGG 0.558494 6_3:-31696235 Msa0948030:CDS
AATTCAATTCCAAGGGACAA+AGG 0.564609 6_3:+31696624 None:intergenic
GATTAAATGGTTTCAAGTCA+AGG 0.567176 6_3:+31697285 None:intergenic
AAAAGTGTATAGCAGATAGT+GGG 0.567377 6_3:-31696878 Msa0948030:CDS
TTCCATATTGGTAGGAATCG+TGG 0.567822 6_3:+31696563 None:intergenic
AGTTTCAAGATTTGACATTG+AGG 0.568321 6_3:-31696656 Msa0948030:CDS
TGCTGAAGAAATCTCATCCA+TGG 0.572502 6_3:-31697492 Msa0948030:CDS
ATTAATGGAAACACTCACCT+CGG 0.576499 6_3:-31697167 Msa0948030:CDS
TGACAAGGGAAGACTGTCAA+AGG 0.577228 6_3:-31696304 Msa0948030:CDS
AATTTCCAAATTAACGATGA+CGG 0.578998 6_3:-31696390 Msa0948030:CDS
CTCCACTGTTGATCCAAGGA+AGG 0.579052 6_3:+31697439 None:intergenic
GTTACGTAGAACCCTGGCAT+GGG 0.580451 6_3:+31698231 None:intergenic
GTGGAAGAAGGTACTATGGT+TGG 0.590899 6_3:-31695967 Msa0948030:CDS
AAGATGAAGACATGAGGCAT+AGG 0.593437 6_3:-31696242 Msa0948030:CDS
CACCACTCAATATAAAAGCA+TGG 0.597294 6_3:+31696691 None:intergenic
GAAATTCCTCCATGTCCAGT+AGG 0.598097 6_3:-31696432 Msa0948030:CDS
TTAGTGTTTATGAGGGTGAG+AGG 0.601942 6_3:-31696497 Msa0948030:CDS
TACCGAGAATTCCCATGCCA+GGG 0.603611 6_3:-31698242 None:intergenic
AGTTACGTAGAACCCTGGCA+TGG 0.607129 6_3:+31698230 None:intergenic
ATGCAAAGAGGCTAATTGGT+CGG 0.607730 6_3:-31697634 Msa0948030:CDS
GAGCTCCAAGAGCCCTTAGG+AGG 0.610393 6_3:-31697067 Msa0948030:CDS
GGGTGAGAGGCAAAACACTA+AGG 0.611079 6_3:-31696484 Msa0948030:CDS
GTGTCAATTAGTGTTTATGA+GGG 0.617761 6_3:-31696504 Msa0948030:CDS
CCTTGGAATTGAATTAGAAG+GGG 0.624722 6_3:-31696616 Msa0948030:CDS
TGTCAAAGGAGGAAGTTGAG+AGG 0.629497 6_3:-31696290 Msa0948030:CDS
ACAAGACTTTGATAATGCAA+TGG 0.631727 6_3:-31697141 Msa0948030:CDS
GTTTAAAATAGTAAATGACA+AGG 0.632540 6_3:-31696319 Msa0948030:CDS
CATCCTCCACTGTTGATCCA+AGG 0.634949 6_3:+31697435 None:intergenic
TAAGTGGCTTGACGTTAATG+TGG 0.637283 6_3:-31696085 Msa0948030:CDS
AGCAGTCTTCAGCCTCCTAA+GGG 0.637340 6_3:+31697055 None:intergenic
TTTAAAATAGTAAATGACAA+GGG 0.637775 6_3:-31696318 Msa0948030:CDS
TCAAGGTGAAGATTTCTGCT+CGG 0.639290 6_3:-31696967 Msa0948030:CDS
GACGTACGCATACAATATGA+GGG 0.641013 6_3:-31696190 Msa0948030:CDS
AAGCATCAATGCAGATGAGG+CGG 0.648135 6_3:-31696733 Msa0948030:CDS
TACAAAGTGATGTGAAGTTG+TGG 0.650178 6_3:-31697592 Msa0948030:CDS
AATACAAAGATGAAGACATG+AGG 0.651663 6_3:-31696248 Msa0948030:CDS
CAAAAGCATCAATGCAGATG+AGG 0.653789 6_3:-31696736 Msa0948030:CDS
AAAGGATGAGAGTCATGATG+TGG 0.658158 6_3:-31695986 Msa0948030:CDS
CAAGGGAAGACTGTCAAAGG+AGG 0.661288 6_3:-31696301 Msa0948030:CDS
CTTCCTTGGATCAACAGTGG+AGG 0.663613 6_3:-31697438 Msa0948030:CDS
TAATGGAAACACTCACCTCG+GGG 0.663720 6_3:-31697165 Msa0948030:CDS
CTTGGAATTGAATTAGAAGG+GGG 0.663974 6_3:-31696615 Msa0948030:CDS
AGCCTTCCTTGGATCAACAG+TGG 0.666700 6_3:-31697441 Msa0948030:CDS
ACGTCAGTTACGTAGAACCC+TGG 0.678468 6_3:+31698225 None:intergenic
TGTTGTTAACTATAAAGACG+AGG 0.695452 6_3:-31697528 Msa0948030:CDS
GGAACACCTACTGGACATGG+AGG 0.712428 6_3:+31696426 None:intergenic
AATGGAAACACTCACCTCGG+GGG 0.728191 6_3:-31697164 Msa0948030:CDS
GGGTTCTACGTAACTGACGT+AGG 0.750508 6_3:-31698222 Msa0948030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATGAAAAAAAAATTT+TGG - chr6_3:31695985-31696004 Msa0948030:CDS 10.0%
!! ATAAATCCATATATATAAAT+AGG + chr6_3:31696339-31696358 None:intergenic 10.0%
!!! ATTTGATGAAAAAAAAATTT+TGG - chr6_3:31695985-31696004 Msa0948030:CDS 10.0%
!! ATAAATCCATATATATAAAT+AGG + chr6_3:31696339-31696358 None:intergenic 10.0%
!!! GGTTTTTTTTATTATTGTAT+GGG + chr6_3:31695880-31695899 None:intergenic 15.0%
!!! TGAAAAAAAAATTTTGGATT+TGG - chr6_3:31695991-31696010 Msa0948030:CDS 15.0%
!!! GAAAAAAAAATTTTGGATTT+GGG - chr6_3:31695992-31696011 Msa0948030:CDS 15.0%
!!! AAAAAAAAATTTTGGATTTG+GGG - chr6_3:31695993-31696012 Msa0948030:CDS 15.0%
!!! AACAATTTTCGTTTTTTATA+AGG - chr6_3:31696231-31696250 Msa0948030:CDS 15.0%
!!! ACAATTTTCGTTTTTTATAA+GGG - chr6_3:31696232-31696251 Msa0948030:CDS 15.0%
!! AGTTATCCTATTTATATATA+TGG - chr6_3:31696330-31696349 Msa0948030:CDS 15.0%
!!! ATGAATTAATCATTTTTATG+TGG + chr6_3:31696368-31696387 None:intergenic 15.0%
!!! TTTAAAATAGTAAATGACAA+GGG - chr6_3:31697756-31697775 Msa0948030:intron 15.0%
!! TTATCATCTTTATAATAACT+GGG + chr6_3:31698070-31698089 None:intergenic 15.0%
!! TTTATCATCTTTATAATAAC+TGG + chr6_3:31698071-31698090 None:intergenic 15.0%
!! AGTTATTATAAAGATGATAA+AGG - chr6_3:31698070-31698089 Msa0948030:intron 15.0%
!!! GGTTTTTTTTATTATTGTAT+GGG + chr6_3:31695880-31695899 None:intergenic 15.0%
!!! TGAAAAAAAAATTTTGGATT+TGG - chr6_3:31695991-31696010 Msa0948030:CDS 15.0%
!!! GAAAAAAAAATTTTGGATTT+GGG - chr6_3:31695992-31696011 Msa0948030:CDS 15.0%
!!! AAAAAAAAATTTTGGATTTG+GGG - chr6_3:31695993-31696012 Msa0948030:CDS 15.0%
!!! AACAATTTTCGTTTTTTATA+AGG - chr6_3:31696231-31696250 Msa0948030:CDS 15.0%
!!! ACAATTTTCGTTTTTTATAA+GGG - chr6_3:31696232-31696251 Msa0948030:CDS 15.0%
!! AGTTATCCTATTTATATATA+TGG - chr6_3:31696330-31696349 Msa0948030:CDS 15.0%
!!! ATGAATTAATCATTTTTATG+TGG + chr6_3:31696368-31696387 None:intergenic 15.0%
!!! TTTAAAATAGTAAATGACAA+GGG - chr6_3:31697756-31697775 Msa0948030:intron 15.0%
!! TTATCATCTTTATAATAACT+GGG + chr6_3:31698070-31698089 None:intergenic 15.0%
!! TTTATCATCTTTATAATAAC+TGG + chr6_3:31698071-31698090 None:intergenic 15.0%
!! AGTTATTATAAAGATGATAA+AGG - chr6_3:31698070-31698089 Msa0948030:intron 15.0%
!!! CGGTTTTTTTTATTATTGTA+TGG + chr6_3:31695881-31695900 None:intergenic 20.0%
!!! AAAAAAAATTTTGGATTTGG+GGG - chr6_3:31695994-31696013 Msa0948030:CDS 20.0%
!! TGTACACTATGAAAAAAAAT+TGG + chr6_3:31696399-31696418 None:intergenic 20.0%
!! TTATAGTTAACAACAATCTT+GGG + chr6_3:31696541-31696560 None:intergenic 20.0%
!! TTTATAGTTAACAACAATCT+TGG + chr6_3:31696542-31696561 None:intergenic 20.0%
!!! AATGTTTTCATTTTTGACTT+AGG - chr6_3:31696823-31696842 Msa0948030:CDS 20.0%
!! ATATAAACAATCTATCTCAA+TGG + chr6_3:31697088-31697107 None:intergenic 20.0%
!!! TGATTTCTTTGGAATTAAAA+AGG - chr6_3:31697296-31697315 Msa0948030:CDS 20.0%
!!! GATTTCTTTGGAATTAAAAA+GGG - chr6_3:31697297-31697316 Msa0948030:CDS 20.0%
!!! GTTTAAAATAGTAAATGACA+AGG - chr6_3:31697755-31697774 Msa0948030:intron 20.0%
!!! AAACTATATTTTGCTAATAC+TGG + chr6_3:31698167-31698186 None:intergenic 20.0%
!!! CGGTTTTTTTTATTATTGTA+TGG + chr6_3:31695881-31695900 None:intergenic 20.0%
!!! AAAAAAAATTTTGGATTTGG+GGG - chr6_3:31695994-31696013 Msa0948030:CDS 20.0%
!! TGTACACTATGAAAAAAAAT+TGG + chr6_3:31696399-31696418 None:intergenic 20.0%
!! TTATAGTTAACAACAATCTT+GGG + chr6_3:31696541-31696560 None:intergenic 20.0%
!! TTTATAGTTAACAACAATCT+TGG + chr6_3:31696542-31696561 None:intergenic 20.0%
!!! AATGTTTTCATTTTTGACTT+AGG - chr6_3:31696823-31696842 Msa0948030:CDS 20.0%
!! ATATAAACAATCTATCTCAA+TGG + chr6_3:31697088-31697107 None:intergenic 20.0%
!!! TGATTTCTTTGGAATTAAAA+AGG - chr6_3:31697296-31697315 Msa0948030:CDS 20.0%
!!! GATTTCTTTGGAATTAAAAA+GGG - chr6_3:31697297-31697316 Msa0948030:CDS 20.0%
!!! GTTTAAAATAGTAAATGACA+AGG - chr6_3:31697755-31697774 Msa0948030:intron 20.0%
!!! AAACTATATTTTGCTAATAC+TGG + chr6_3:31698167-31698186 None:intergenic 20.0%
!! AAAAAAATTTTGGATTTGGG+GGG - chr6_3:31695995-31696014 Msa0948030:CDS 25.0%
!! TATGTTTTATCAGATGAAAC+AGG + chr6_3:31696077-31696096 None:intergenic 25.0%
! ATCTGATAAAACATAATCCT+CGG - chr6_3:31696082-31696101 Msa0948030:CDS 25.0%
! TTTCTACATCCATGATTAAA+TGG + chr6_3:31696805-31696824 None:intergenic 25.0%
! GAGATAGATTGTTTATATCA+AGG - chr6_3:31697090-31697109 Msa0948030:CDS 25.0%
!!! CAACTTTTGATTGATTTCTT+TGG - chr6_3:31697285-31697304 Msa0948030:CDS 25.0%
!!! ATTGACACAAATTTTTGGTT+GGG + chr6_3:31697558-31697577 None:intergenic 25.0%
!!! AATTGACACAAATTTTTGGT+TGG + chr6_3:31697559-31697578 None:intergenic 25.0%
!! CACTAATTGACACAAATTTT+TGG + chr6_3:31697563-31697582 None:intergenic 25.0%
! AATTTCCAAATTAACGATGA+CGG - chr6_3:31697684-31697703 Msa0948030:intron 25.0%
!! AAAGCTTTTGTCAAAAGAAA+AGG - chr6_3:31697935-31697954 Msa0948030:intron 25.0%
! TGAAGAAAAAAAAGAATCGT+TGG - chr6_3:31698138-31698157 Msa0948030:intron 25.0%
!! AAAAAAATTTTGGATTTGGG+GGG - chr6_3:31695995-31696014 Msa0948030:CDS 25.0%
!! TATGTTTTATCAGATGAAAC+AGG + chr6_3:31696077-31696096 None:intergenic 25.0%
! ATCTGATAAAACATAATCCT+CGG - chr6_3:31696082-31696101 Msa0948030:CDS 25.0%
! TTTCTACATCCATGATTAAA+TGG + chr6_3:31696805-31696824 None:intergenic 25.0%
! GAGATAGATTGTTTATATCA+AGG - chr6_3:31697090-31697109 Msa0948030:CDS 25.0%
!!! CAACTTTTGATTGATTTCTT+TGG - chr6_3:31697285-31697304 Msa0948030:CDS 25.0%
!!! ATTGACACAAATTTTTGGTT+GGG + chr6_3:31697558-31697577 None:intergenic 25.0%
!!! AATTGACACAAATTTTTGGT+TGG + chr6_3:31697559-31697578 None:intergenic 25.0%
!! CACTAATTGACACAAATTTT+TGG + chr6_3:31697563-31697582 None:intergenic 25.0%
! AATTTCCAAATTAACGATGA+CGG - chr6_3:31697684-31697703 Msa0948030:intron 25.0%
!! AAAGCTTTTGTCAAAAGAAA+AGG - chr6_3:31697935-31697954 Msa0948030:intron 25.0%
! TGAAGAAAAAAAAGAATCGT+TGG - chr6_3:31698138-31698157 Msa0948030:intron 25.0%
!!! CAGGTATTGAGCATTTTAAT+CGG + chr6_3:31695901-31695920 None:intergenic 30.0%
ACTCTAGACGTAAAAAAAAC+AGG + chr6_3:31695920-31695939 None:intergenic 30.0%
! AAAAAATTTTGGATTTGGGG+GGG - chr6_3:31695996-31696015 Msa0948030:CDS 30.0%
!! AGTTGATGAAAATAGTGTGT+AGG - chr6_3:31696039-31696058 Msa0948030:CDS 30.0%
! GTTGATGAAAATAGTGTGTA+GGG - chr6_3:31696040-31696059 Msa0948030:CDS 30.0%
TTGATGAAAATAGTGTGTAG+GGG - chr6_3:31696041-31696060 Msa0948030:CDS 30.0%
! GTAATACAATCTTGGGATTT+TGG + chr6_3:31696259-31696278 None:intergenic 30.0%
CCTGTAAGTAATACAATCTT+GGG + chr6_3:31696266-31696285 None:intergenic 30.0%
CCAAGATTGTATTACTTACA+GGG - chr6_3:31696264-31696283 Msa0948030:CDS 30.0%
!!! TTTGTTTTGTAGATGCAAAG+AGG - chr6_3:31696428-31696447 Msa0948030:CDS 30.0%
TTCACATCACTTTGTACTAT+GGG + chr6_3:31696478-31696497 None:intergenic 30.0%
TGTTGTTAACTATAAAGACG+AGG - chr6_3:31696546-31696565 Msa0948030:CDS 30.0%
! GATTAAATGGTTTCAAGTCA+AGG + chr6_3:31696792-31696811 None:intergenic 30.0%
GACTTGAAACCATTTAATCA+TGG - chr6_3:31696793-31696812 Msa0948030:CDS 30.0%
!!! GTTTTCATTTTTGACTTAGG+TGG - chr6_3:31696826-31696845 Msa0948030:CDS 30.0%
TCTATTCTCACATTTGAGAA+TGG - chr6_3:31696865-31696884 Msa0948030:CDS 30.0%
GAATGGTGATATCAATGTTA+AGG - chr6_3:31696882-31696901 Msa0948030:CDS 30.0%
ATCAATGTTAAGGCCATTAA+TGG - chr6_3:31696892-31696911 Msa0948030:CDS 30.0%
!! ACAAGACTTTGATAATGCAA+TGG - chr6_3:31696933-31696952 Msa0948030:CDS 30.0%
TCAAGAACTCTTTCACAAAA+TGG + chr6_3:31696963-31696982 None:intergenic 30.0%
AAGCATAAACTGGACATTAA+TGG - chr6_3:31696985-31697004 Msa0948030:CDS 30.0%
! AAAAGTGTATAGCAGATAGT+GGG - chr6_3:31697196-31697215 Msa0948030:CDS 30.0%
ATTCATGATGTTGTACTTGT+TGG - chr6_3:31697234-31697253 Msa0948030:CDS 30.0%
! TTTGGAATTAAAAAGGGTAG+TGG - chr6_3:31697303-31697322 Msa0948030:CDS 30.0%
TTGGAATTAAAAAGGGTAGT+GGG - chr6_3:31697304-31697323 Msa0948030:CDS 30.0%
AGTTTCAAGATTTGACATTG+AGG - chr6_3:31697418-31697437 Msa0948030:CDS 30.0%
GTTTCAAGATTTGACATTGA+GGG - chr6_3:31697419-31697438 Msa0948030:CDS 30.0%
TCATGAGCATAATAATTCCT+AGG - chr6_3:31697484-31697503 Msa0948030:CDS 30.0%
! TATACGTTTTCCATATTGGT+AGG + chr6_3:31697522-31697541 None:intergenic 30.0%
! GTTGTATACGTTTTCCATAT+TGG + chr6_3:31697526-31697545 None:intergenic 30.0%
TGTGTCAATTAGTGTTTATG+AGG - chr6_3:31697569-31697588 Msa0948030:CDS 30.0%
GTGTCAATTAGTGTTTATGA+GGG - chr6_3:31697570-31697589 Msa0948030:CDS 30.0%
!!! TCTGTTTTGGAAAAAGACTT+GGG - chr6_3:31697720-31697739 Msa0948030:intron 30.0%
AATACAAAGATGAAGACATG+AGG - chr6_3:31697826-31697845 Msa0948030:intron 30.0%
!! AAAAGCTTTGAGCTAATATC+CGG + chr6_3:31697924-31697943 None:intergenic 30.0%
GATCAATAACGCAATTGATT+TGG - chr6_3:31697962-31697981 Msa0948030:intron 30.0%
!! CAATTGATTTGGTCTTTAAG+TGG - chr6_3:31697973-31697992 Msa0948030:intron 30.0%
AACAAGATGTTGAATGTTAC+AGG - chr6_3:31698021-31698040 Msa0948030:intron 30.0%
!!! CGATTCTTTTTTTTCTTCAC+TGG + chr6_3:31698137-31698156 None:intergenic 30.0%
GGGATAATATGTTCCATATT+TGG - chr6_3:31698224-31698243 Msa0948030:CDS 30.0%
!!! CAGGTATTGAGCATTTTAAT+CGG + chr6_3:31695901-31695920 None:intergenic 30.0%
ACTCTAGACGTAAAAAAAAC+AGG + chr6_3:31695920-31695939 None:intergenic 30.0%
! AAAAAATTTTGGATTTGGGG+GGG - chr6_3:31695996-31696015 Msa0948030:CDS 30.0%
!! AGTTGATGAAAATAGTGTGT+AGG - chr6_3:31696039-31696058 Msa0948030:CDS 30.0%
! GTTGATGAAAATAGTGTGTA+GGG - chr6_3:31696040-31696059 Msa0948030:CDS 30.0%
TTGATGAAAATAGTGTGTAG+GGG - chr6_3:31696041-31696060 Msa0948030:CDS 30.0%
! GTAATACAATCTTGGGATTT+TGG + chr6_3:31696259-31696278 None:intergenic 30.0%
CCTGTAAGTAATACAATCTT+GGG + chr6_3:31696266-31696285 None:intergenic 30.0%
CCAAGATTGTATTACTTACA+GGG - chr6_3:31696264-31696283 Msa0948030:CDS 30.0%
!!! TTTGTTTTGTAGATGCAAAG+AGG - chr6_3:31696428-31696447 Msa0948030:CDS 30.0%
TTCACATCACTTTGTACTAT+GGG + chr6_3:31696478-31696497 None:intergenic 30.0%
TGTTGTTAACTATAAAGACG+AGG - chr6_3:31696546-31696565 Msa0948030:CDS 30.0%
! GATTAAATGGTTTCAAGTCA+AGG + chr6_3:31696792-31696811 None:intergenic 30.0%
GACTTGAAACCATTTAATCA+TGG - chr6_3:31696793-31696812 Msa0948030:CDS 30.0%
!!! GTTTTCATTTTTGACTTAGG+TGG - chr6_3:31696826-31696845 Msa0948030:CDS 30.0%
TCTATTCTCACATTTGAGAA+TGG - chr6_3:31696865-31696884 Msa0948030:CDS 30.0%
GAATGGTGATATCAATGTTA+AGG - chr6_3:31696882-31696901 Msa0948030:CDS 30.0%
ATCAATGTTAAGGCCATTAA+TGG - chr6_3:31696892-31696911 Msa0948030:CDS 30.0%
!! ACAAGACTTTGATAATGCAA+TGG - chr6_3:31696933-31696952 Msa0948030:CDS 30.0%
TCAAGAACTCTTTCACAAAA+TGG + chr6_3:31696963-31696982 None:intergenic 30.0%
AAGCATAAACTGGACATTAA+TGG - chr6_3:31696985-31697004 Msa0948030:CDS 30.0%
! AAAAGTGTATAGCAGATAGT+GGG - chr6_3:31697196-31697215 Msa0948030:CDS 30.0%
ATTCATGATGTTGTACTTGT+TGG - chr6_3:31697234-31697253 Msa0948030:CDS 30.0%
! TTTGGAATTAAAAAGGGTAG+TGG - chr6_3:31697303-31697322 Msa0948030:CDS 30.0%
TTGGAATTAAAAAGGGTAGT+GGG - chr6_3:31697304-31697323 Msa0948030:CDS 30.0%
AGTTTCAAGATTTGACATTG+AGG - chr6_3:31697418-31697437 Msa0948030:CDS 30.0%
GTTTCAAGATTTGACATTGA+GGG - chr6_3:31697419-31697438 Msa0948030:CDS 30.0%
TCATGAGCATAATAATTCCT+AGG - chr6_3:31697484-31697503 Msa0948030:CDS 30.0%
! TATACGTTTTCCATATTGGT+AGG + chr6_3:31697522-31697541 None:intergenic 30.0%
! GTTGTATACGTTTTCCATAT+TGG + chr6_3:31697526-31697545 None:intergenic 30.0%
TGTGTCAATTAGTGTTTATG+AGG - chr6_3:31697569-31697588 Msa0948030:CDS 30.0%
GTGTCAATTAGTGTTTATGA+GGG - chr6_3:31697570-31697589 Msa0948030:CDS 30.0%
!!! TCTGTTTTGGAAAAAGACTT+GGG - chr6_3:31697720-31697739 Msa0948030:intron 30.0%
AATACAAAGATGAAGACATG+AGG - chr6_3:31697826-31697845 Msa0948030:intron 30.0%
!! AAAAGCTTTGAGCTAATATC+CGG + chr6_3:31697924-31697943 None:intergenic 30.0%
GATCAATAACGCAATTGATT+TGG - chr6_3:31697962-31697981 Msa0948030:intron 30.0%
!! CAATTGATTTGGTCTTTAAG+TGG - chr6_3:31697973-31697992 Msa0948030:intron 30.0%
AACAAGATGTTGAATGTTAC+AGG - chr6_3:31698021-31698040 Msa0948030:intron 30.0%
!!! CGATTCTTTTTTTTCTTCAC+TGG + chr6_3:31698137-31698156 None:intergenic 30.0%
GGGATAATATGTTCCATATT+TGG - chr6_3:31698224-31698243 Msa0948030:CDS 30.0%
ATGATTCAAGCATCAAGCAT+AGG + chr6_3:31695955-31695974 None:intergenic 35.0%
TGCTTGATGCTTGAATCATT+TGG - chr6_3:31695956-31695975 Msa0948030:CDS 35.0%
GCTTGATGCTTGAATCATTT+GGG - chr6_3:31695957-31695976 Msa0948030:CDS 35.0%
CTTGATGCTTGAATCATTTG+GGG - chr6_3:31695958-31695977 Msa0948030:CDS 35.0%
TTGATGCTTGAATCATTTGG+GGG - chr6_3:31695959-31695978 Msa0948030:CDS 35.0%
TGATGAAAATAGTGTGTAGG+GGG - chr6_3:31696042-31696061 Msa0948030:CDS 35.0%
TGTTGTTGACACATTGCATA+AGG + chr6_3:31696215-31696234 None:intergenic 35.0%
CCCAAGATTGTATTACTTAC+AGG - chr6_3:31696263-31696282 Msa0948030:CDS 35.0%
CCCTGTAAGTAATACAATCT+TGG + chr6_3:31696267-31696286 None:intergenic 35.0%
CTTCACATCACTTTGTACTA+TGG + chr6_3:31696479-31696498 None:intergenic 35.0%
TACAAAGTGATGTGAAGTTG+TGG - chr6_3:31696482-31696501 Msa0948030:CDS 35.0%
TTGTGGCCATTCAAAGTAAT+TGG - chr6_3:31696499-31696518 Msa0948030:CDS 35.0%
AGAAATCTCATCCATGGTAT+TGG - chr6_3:31696588-31696607 Msa0948030:CDS 35.0%
TGTGAGTCATTAAAGTATGC+AGG + chr6_3:31696679-31696698 None:intergenic 35.0%
!!! TTCATTTTTGACTTAGGTGG+TGG - chr6_3:31696829-31696848 Msa0948030:CDS 35.0%
ATTAATGGAAACACTCACCT+CGG - chr6_3:31696907-31696926 Msa0948030:CDS 35.0%
! GTTCTTGAGAAAGCATAAAC+TGG - chr6_3:31696975-31696994 Msa0948030:CDS 35.0%
CTCAATGGTAGTCTCATTAT+TGG + chr6_3:31697073-31697092 None:intergenic 35.0%
! GAAAAGTGTATAGCAGATAG+TGG - chr6_3:31697195-31697214 Msa0948030:CDS 35.0%
! TTGTTGCACTTTTACAATCC+TGG + chr6_3:31697268-31697287 None:intergenic 35.0%
!! AATTAAAAAGGGTAGTGGGA+CGG - chr6_3:31697308-31697327 Msa0948030:CDS 35.0%
! GTCCATGCTTTTATATTGAG+TGG - chr6_3:31697381-31697400 Msa0948030:CDS 35.0%
CACCACTCAATATAAAAGCA+TGG + chr6_3:31697386-31697405 None:intergenic 35.0%
AATTCAATTCCAAGGGACAA+AGG + chr6_3:31697453-31697472 None:intergenic 35.0%
TCCCTTGGAATTGAATTAGA+AGG - chr6_3:31697456-31697475 Msa0948030:CDS 35.0%
CCCTTCTAATTCAATTCCAA+GGG + chr6_3:31697460-31697479 None:intergenic 35.0%
CCCTTGGAATTGAATTAGAA+GGG - chr6_3:31697457-31697476 Msa0948030:CDS 35.0%
CCTTGGAATTGAATTAGAAG+GGG - chr6_3:31697458-31697477 Msa0948030:CDS 35.0%
CTTGGAATTGAATTAGAAGG+GGG - chr6_3:31697459-31697478 Msa0948030:CDS 35.0%
!!! ACAACTTGCTAGGAACTTTT+AGG - chr6_3:31697616-31697635 Msa0948030:CDS 35.0%
TGGAAATTGACCATGAATCT+AGG + chr6_3:31697672-31697691 None:intergenic 35.0%
! CATCTTAGATGTCTCTGTTT+TGG - chr6_3:31697707-31697726 Msa0948030:intron 35.0%
!!! CTCTGTTTTGGAAAAAGACT+TGG - chr6_3:31697719-31697738 Msa0948030:intron 35.0%
!!! CTGTTTTGGAAAAAGACTTG+GGG - chr6_3:31697721-31697740 Msa0948030:intron 35.0%
AAGACTTGGGGATTGATAAA+AGG - chr6_3:31697733-31697752 Msa0948030:intron 35.0%
GAGGGAATTCATAAATGATC+CGG - chr6_3:31697902-31697921 Msa0948030:intron 35.0%
ATGATTCAAGCATCAAGCAT+AGG + chr6_3:31695955-31695974 None:intergenic 35.0%
TGCTTGATGCTTGAATCATT+TGG - chr6_3:31695956-31695975 Msa0948030:CDS 35.0%
GCTTGATGCTTGAATCATTT+GGG - chr6_3:31695957-31695976 Msa0948030:CDS 35.0%
CTTGATGCTTGAATCATTTG+GGG - chr6_3:31695958-31695977 Msa0948030:CDS 35.0%
TTGATGCTTGAATCATTTGG+GGG - chr6_3:31695959-31695978 Msa0948030:CDS 35.0%
TGATGAAAATAGTGTGTAGG+GGG - chr6_3:31696042-31696061 Msa0948030:CDS 35.0%
TGTTGTTGACACATTGCATA+AGG + chr6_3:31696215-31696234 None:intergenic 35.0%
CCCAAGATTGTATTACTTAC+AGG - chr6_3:31696263-31696282 Msa0948030:CDS 35.0%
CCCTGTAAGTAATACAATCT+TGG + chr6_3:31696267-31696286 None:intergenic 35.0%
CTTCACATCACTTTGTACTA+TGG + chr6_3:31696479-31696498 None:intergenic 35.0%
TACAAAGTGATGTGAAGTTG+TGG - chr6_3:31696482-31696501 Msa0948030:CDS 35.0%
TTGTGGCCATTCAAAGTAAT+TGG - chr6_3:31696499-31696518 Msa0948030:CDS 35.0%
AGAAATCTCATCCATGGTAT+TGG - chr6_3:31696588-31696607 Msa0948030:CDS 35.0%
TGTGAGTCATTAAAGTATGC+AGG + chr6_3:31696679-31696698 None:intergenic 35.0%
!!! TTCATTTTTGACTTAGGTGG+TGG - chr6_3:31696829-31696848 Msa0948030:CDS 35.0%
ATTAATGGAAACACTCACCT+CGG - chr6_3:31696907-31696926 Msa0948030:CDS 35.0%
! GTTCTTGAGAAAGCATAAAC+TGG - chr6_3:31696975-31696994 Msa0948030:CDS 35.0%
CTCAATGGTAGTCTCATTAT+TGG + chr6_3:31697073-31697092 None:intergenic 35.0%
! GAAAAGTGTATAGCAGATAG+TGG - chr6_3:31697195-31697214 Msa0948030:CDS 35.0%
! TTGTTGCACTTTTACAATCC+TGG + chr6_3:31697268-31697287 None:intergenic 35.0%
!! AATTAAAAAGGGTAGTGGGA+CGG - chr6_3:31697308-31697327 Msa0948030:CDS 35.0%
! GTCCATGCTTTTATATTGAG+TGG - chr6_3:31697381-31697400 Msa0948030:CDS 35.0%
CACCACTCAATATAAAAGCA+TGG + chr6_3:31697386-31697405 None:intergenic 35.0%
AATTCAATTCCAAGGGACAA+AGG + chr6_3:31697453-31697472 None:intergenic 35.0%
TCCCTTGGAATTGAATTAGA+AGG - chr6_3:31697456-31697475 Msa0948030:CDS 35.0%
CCCTTCTAATTCAATTCCAA+GGG + chr6_3:31697460-31697479 None:intergenic 35.0%
CCCTTGGAATTGAATTAGAA+GGG - chr6_3:31697457-31697476 Msa0948030:CDS 35.0%
CCTTGGAATTGAATTAGAAG+GGG - chr6_3:31697458-31697477 Msa0948030:CDS 35.0%
CTTGGAATTGAATTAGAAGG+GGG - chr6_3:31697459-31697478 Msa0948030:CDS 35.0%
!!! ACAACTTGCTAGGAACTTTT+AGG - chr6_3:31697616-31697635 Msa0948030:CDS 35.0%
TGGAAATTGACCATGAATCT+AGG + chr6_3:31697672-31697691 None:intergenic 35.0%
! CATCTTAGATGTCTCTGTTT+TGG - chr6_3:31697707-31697726 Msa0948030:intron 35.0%
!!! CTCTGTTTTGGAAAAAGACT+TGG - chr6_3:31697719-31697738 Msa0948030:intron 35.0%
!!! CTGTTTTGGAAAAAGACTTG+GGG - chr6_3:31697721-31697740 Msa0948030:intron 35.0%
AAGACTTGGGGATTGATAAA+AGG - chr6_3:31697733-31697752 Msa0948030:intron 35.0%
GAGGGAATTCATAAATGATC+CGG - chr6_3:31697902-31697921 Msa0948030:intron 35.0%
TGATGCTTGAATCATTTGGG+GGG - chr6_3:31695960-31695979 Msa0948030:CDS 40.0%
! TTAACTACCGAGGTTTTCCT+CGG - chr6_3:31696108-31696127 Msa0948030:CDS 40.0%
GTAGATGCAAAGAGGCTAAT+TGG - chr6_3:31696436-31696455 Msa0948030:CDS 40.0%
ATGCAAAGAGGCTAATTGGT+CGG - chr6_3:31696440-31696459 Msa0948030:CDS 40.0%
AGGTCGCCAATTACTTTGAA+TGG + chr6_3:31696508-31696527 None:intergenic 40.0%
CAATCTTGGGTTTGTCATTC+AGG + chr6_3:31696528-31696547 None:intergenic 40.0%
TGCTGAAGAAATCTCATCCA+TGG - chr6_3:31696582-31696601 Msa0948030:CDS 40.0%
GAGGTGAGTGTTTCCATTAA+TGG + chr6_3:31696908-31696927 None:intergenic 40.0%
TTAATGGAAACACTCACCTC+GGG - chr6_3:31696908-31696927 Msa0948030:CDS 40.0%
TCAAGGTGAAGATTTCTGCT+CGG - chr6_3:31697107-31697126 Msa0948030:CDS 40.0%
! CATGATGTTGTACTTGTTGG+CGG - chr6_3:31697237-31697256 Msa0948030:CDS 40.0%
!! CAAAAGCATCAATGCAGATG+AGG - chr6_3:31697338-31697357 Msa0948030:CDS 40.0%
CCCCTTCTAATTCAATTCCA+AGG + chr6_3:31697461-31697480 None:intergenic 40.0%
TACCACGATTCCTACCAATA+TGG - chr6_3:31697509-31697528 Msa0948030:CDS 40.0%
TTCCATATTGGTAGGAATCG+TGG + chr6_3:31697514-31697533 None:intergenic 40.0%
TTAGTGTTTATGAGGGTGAG+AGG - chr6_3:31697577-31697596 Msa0948030:CDS 40.0%
! ACTAAGGACAACAACTTGCT+AGG - chr6_3:31697606-31697625 Msa0948030:CDS 40.0%
ATGAATCTAGGAACACCTAC+TGG + chr6_3:31697660-31697679 None:intergenic 40.0%
AGTAGGTGTTCCTAGATTCA+TGG - chr6_3:31697659-31697678 Msa0948030:intron 40.0%
AGATGCCGTCATCGTTAATT+TGG + chr6_3:31697692-31697711 None:intergenic 40.0%
AAGATGAAGACATGAGGCAT+AGG - chr6_3:31697832-31697851 Msa0948030:intron 40.0%
AGACGTACGCATACAATATG+AGG - chr6_3:31697883-31697902 Msa0948030:intron 40.0%
GACGTACGCATACAATATGA+GGG - chr6_3:31697884-31697903 Msa0948030:intron 40.0%
TAAGTGGCTTGACGTTAATG+TGG - chr6_3:31697989-31698008 Msa0948030:intron 40.0%
AAAGGATGAGAGTCATGATG+TGG - chr6_3:31698088-31698107 Msa0948030:intron 40.0%
!! TGATGTGGAAGAAGGTACTA+TGG - chr6_3:31698103-31698122 Msa0948030:intron 40.0%
!! TGGAAGAAGGTACTATGGTT+GGG - chr6_3:31698108-31698127 Msa0948030:intron 40.0%
TGATGCTTGAATCATTTGGG+GGG - chr6_3:31695960-31695979 Msa0948030:CDS 40.0%
! TTAACTACCGAGGTTTTCCT+CGG - chr6_3:31696108-31696127 Msa0948030:CDS 40.0%
GTAGATGCAAAGAGGCTAAT+TGG - chr6_3:31696436-31696455 Msa0948030:CDS 40.0%
ATGCAAAGAGGCTAATTGGT+CGG - chr6_3:31696440-31696459 Msa0948030:CDS 40.0%
AGGTCGCCAATTACTTTGAA+TGG + chr6_3:31696508-31696527 None:intergenic 40.0%
CAATCTTGGGTTTGTCATTC+AGG + chr6_3:31696528-31696547 None:intergenic 40.0%
TGCTGAAGAAATCTCATCCA+TGG - chr6_3:31696582-31696601 Msa0948030:CDS 40.0%
GAGGTGAGTGTTTCCATTAA+TGG + chr6_3:31696908-31696927 None:intergenic 40.0%
TTAATGGAAACACTCACCTC+GGG - chr6_3:31696908-31696927 Msa0948030:CDS 40.0%
TCAAGGTGAAGATTTCTGCT+CGG - chr6_3:31697107-31697126 Msa0948030:CDS 40.0%
! CATGATGTTGTACTTGTTGG+CGG - chr6_3:31697237-31697256 Msa0948030:CDS 40.0%
!! CAAAAGCATCAATGCAGATG+AGG - chr6_3:31697338-31697357 Msa0948030:CDS 40.0%
CCCCTTCTAATTCAATTCCA+AGG + chr6_3:31697461-31697480 None:intergenic 40.0%
TACCACGATTCCTACCAATA+TGG - chr6_3:31697509-31697528 Msa0948030:CDS 40.0%
TTCCATATTGGTAGGAATCG+TGG + chr6_3:31697514-31697533 None:intergenic 40.0%
TTAGTGTTTATGAGGGTGAG+AGG - chr6_3:31697577-31697596 Msa0948030:CDS 40.0%
! ACTAAGGACAACAACTTGCT+AGG - chr6_3:31697606-31697625 Msa0948030:CDS 40.0%
ATGAATCTAGGAACACCTAC+TGG + chr6_3:31697660-31697679 None:intergenic 40.0%
AGTAGGTGTTCCTAGATTCA+TGG - chr6_3:31697659-31697678 Msa0948030:intron 40.0%
AGATGCCGTCATCGTTAATT+TGG + chr6_3:31697692-31697711 None:intergenic 40.0%
AAGATGAAGACATGAGGCAT+AGG - chr6_3:31697832-31697851 Msa0948030:intron 40.0%
AGACGTACGCATACAATATG+AGG - chr6_3:31697883-31697902 Msa0948030:intron 40.0%
GACGTACGCATACAATATGA+GGG - chr6_3:31697884-31697903 Msa0948030:intron 40.0%
TAAGTGGCTTGACGTTAATG+TGG - chr6_3:31697989-31698008 Msa0948030:intron 40.0%
AAAGGATGAGAGTCATGATG+TGG - chr6_3:31698088-31698107 Msa0948030:intron 40.0%
!! TGATGTGGAAGAAGGTACTA+TGG - chr6_3:31698103-31698122 Msa0948030:intron 40.0%
!! TGGAAGAAGGTACTATGGTT+GGG - chr6_3:31698108-31698127 Msa0948030:intron 40.0%
! ATTTTGGATTTGGGGGGGAT+TGG - chr6_3:31696001-31696020 Msa0948030:CDS 45.0%
GGGGATTGGATGAAATGGTA+TGG - chr6_3:31696015-31696034 Msa0948030:CDS 45.0%
TTAACTGCCGAGGAAAACCT+CGG + chr6_3:31696118-31696137 None:intergenic 45.0%
! CAGCCGGATTTTGAATTCCT+CGG - chr6_3:31696141-31696160 Msa0948030:CDS 45.0%
CTGCCGAGGAATTCAAAATC+CGG + chr6_3:31696147-31696166 None:intergenic 45.0%
! GCGCATTTTCACCAATACCA+TGG + chr6_3:31696602-31696621 None:intergenic 45.0%
TATGCAATTGCAGCTGCAGT+AGG + chr6_3:31696766-31696785 None:intergenic 45.0%
ACTGCAGCTGCAATTGCATA+TGG - chr6_3:31696766-31696785 Msa0948030:CDS 45.0%
! TGACTTAGGTGGTGGTACTT+TGG - chr6_3:31696837-31696856 Msa0948030:CDS 45.0%
TAATGGAAACACTCACCTCG+GGG - chr6_3:31696909-31696928 Msa0948030:CDS 45.0%
! GAGTCTTTTTGACCAGTGCA+TGG - chr6_3:31697164-31697183 Msa0948030:CDS 45.0%
TTTCTACACTCTCCATGCAC+TGG + chr6_3:31697179-31697198 None:intergenic 45.0%
AAGCATCAATGCAGATGAGG+CGG - chr6_3:31697341-31697360 Msa0948030:CDS 45.0%
GAAGTCAATCCTTTGTCCCT+TGG - chr6_3:31697441-31697460 Msa0948030:CDS 45.0%
GTAGGAATCGTGGTATTCCT+AGG + chr6_3:31697504-31697523 None:intergenic 45.0%
GAAATTCCTCCATGTCCAGT+AGG - chr6_3:31697642-31697661 Msa0948030:intron 45.0%
TGACAAGGGAAGACTGTCAA+AGG - chr6_3:31697770-31697789 Msa0948030:intron 45.0%
TGTCAAAGGAGGAAGTTGAG+AGG - chr6_3:31697784-31697803 Msa0948030:intron 45.0%
AGACATGAGGCATAGGAAGA+AGG - chr6_3:31697839-31697858 Msa0948030:intron 45.0%
GAGAGTCATGATGTGGAAGA+AGG - chr6_3:31698095-31698114 Msa0948030:intron 45.0%
!! GTGGAAGAAGGTACTATGGT+TGG - chr6_3:31698107-31698126 Msa0948030:intron 45.0%
! ATTTTGGATTTGGGGGGGAT+TGG - chr6_3:31696001-31696020 Msa0948030:CDS 45.0%
GGGGATTGGATGAAATGGTA+TGG - chr6_3:31696015-31696034 Msa0948030:CDS 45.0%
TTAACTGCCGAGGAAAACCT+CGG + chr6_3:31696118-31696137 None:intergenic 45.0%
! CAGCCGGATTTTGAATTCCT+CGG - chr6_3:31696141-31696160 Msa0948030:CDS 45.0%
CTGCCGAGGAATTCAAAATC+CGG + chr6_3:31696147-31696166 None:intergenic 45.0%
! GCGCATTTTCACCAATACCA+TGG + chr6_3:31696602-31696621 None:intergenic 45.0%
TATGCAATTGCAGCTGCAGT+AGG + chr6_3:31696766-31696785 None:intergenic 45.0%
ACTGCAGCTGCAATTGCATA+TGG - chr6_3:31696766-31696785 Msa0948030:CDS 45.0%
! TGACTTAGGTGGTGGTACTT+TGG - chr6_3:31696837-31696856 Msa0948030:CDS 45.0%
TAATGGAAACACTCACCTCG+GGG - chr6_3:31696909-31696928 Msa0948030:CDS 45.0%
! GAGTCTTTTTGACCAGTGCA+TGG - chr6_3:31697164-31697183 Msa0948030:CDS 45.0%
TTTCTACACTCTCCATGCAC+TGG + chr6_3:31697179-31697198 None:intergenic 45.0%
AAGCATCAATGCAGATGAGG+CGG - chr6_3:31697341-31697360 Msa0948030:CDS 45.0%
GAAGTCAATCCTTTGTCCCT+TGG - chr6_3:31697441-31697460 Msa0948030:CDS 45.0%
GTAGGAATCGTGGTATTCCT+AGG + chr6_3:31697504-31697523 None:intergenic 45.0%
GAAATTCCTCCATGTCCAGT+AGG - chr6_3:31697642-31697661 Msa0948030:intron 45.0%
TGACAAGGGAAGACTGTCAA+AGG - chr6_3:31697770-31697789 Msa0948030:intron 45.0%
TGTCAAAGGAGGAAGTTGAG+AGG - chr6_3:31697784-31697803 Msa0948030:intron 45.0%
AGACATGAGGCATAGGAAGA+AGG - chr6_3:31697839-31697858 Msa0948030:intron 45.0%
GAGAGTCATGATGTGGAAGA+AGG - chr6_3:31698095-31698114 Msa0948030:intron 45.0%
!! GTGGAAGAAGGTACTATGGT+TGG - chr6_3:31698107-31698126 Msa0948030:intron 45.0%
ACGTCAGTTACGTAGAACCC+TGG + chr6_3:31695852-31695871 None:intergenic 50.0%
GGGTTCTACGTAACTGACGT+AGG - chr6_3:31695852-31695871 Msa0948030:CDS 50.0%
TTGGGGGGGATTGGATGAAA+TGG - chr6_3:31696010-31696029 Msa0948030:CDS 50.0%
AAATAGTGTGTAGGGGGAGC+AGG - chr6_3:31696048-31696067 Msa0948030:CDS 50.0%
! AAAAGACGCTTTTGCCCCCT+CGG + chr6_3:31696177-31696196 None:intergenic 50.0%
GAGATAGCAGAAGCCTTCCT+TGG - chr6_3:31696622-31696641 Msa0948030:CDS 50.0%
AGCCTTCCTTGGATCAACAG+TGG - chr6_3:31696633-31696652 Msa0948030:CDS 50.0%
CTCCACTGTTGATCCAAGGA+AGG + chr6_3:31696638-31696657 None:intergenic 50.0%
CTTCCTTGGATCAACAGTGG+AGG - chr6_3:31696636-31696655 Msa0948030:CDS 50.0%
CATCCTCCACTGTTGATCCA+AGG + chr6_3:31696642-31696661 None:intergenic 50.0%
AATGGAAACACTCACCTCGG+GGG - chr6_3:31696910-31696929 Msa0948030:CDS 50.0%
! TATCAAAGTCTTGTCCCCCG+AGG + chr6_3:31696927-31696946 None:intergenic 50.0%
AGCAGTCTTCAGCCTCCTAA+GGG + chr6_3:31697022-31697041 None:intergenic 50.0%
AAGCAGTCTTCAGCCTCCTA+AGG + chr6_3:31697023-31697042 None:intergenic 50.0%
! TTCTGCTCGGTGATTAGTCG+TGG - chr6_3:31697120-31697139 Msa0948030:CDS 50.0%
GGGTGAGAGGCAAAACACTA+AGG - chr6_3:31697590-31697609 Msa0948030:CDS 50.0%
CTAGGAACACCTACTGGACA+TGG + chr6_3:31697654-31697673 None:intergenic 50.0%
CAAGGGAAGACTGTCAAAGG+AGG - chr6_3:31697773-31697792 Msa0948030:intron 50.0%
TTGCAGCTGCATACACTAGC+TGG + chr6_3:31698190-31698209 None:intergenic 50.0%
CTAGTGTATGCAGCTGCAAC+AGG - chr6_3:31698191-31698210 Msa0948030:intron 50.0%
ACGTCAGTTACGTAGAACCC+TGG + chr6_3:31695852-31695871 None:intergenic 50.0%
GGGTTCTACGTAACTGACGT+AGG - chr6_3:31695852-31695871 Msa0948030:CDS 50.0%
TTGGGGGGGATTGGATGAAA+TGG - chr6_3:31696010-31696029 Msa0948030:CDS 50.0%
AAATAGTGTGTAGGGGGAGC+AGG - chr6_3:31696048-31696067 Msa0948030:CDS 50.0%
! AAAAGACGCTTTTGCCCCCT+CGG + chr6_3:31696177-31696196 None:intergenic 50.0%
GAGATAGCAGAAGCCTTCCT+TGG - chr6_3:31696622-31696641 Msa0948030:CDS 50.0%
AGCCTTCCTTGGATCAACAG+TGG - chr6_3:31696633-31696652 Msa0948030:CDS 50.0%
CTCCACTGTTGATCCAAGGA+AGG + chr6_3:31696638-31696657 None:intergenic 50.0%
CTTCCTTGGATCAACAGTGG+AGG - chr6_3:31696636-31696655 Msa0948030:CDS 50.0%
CATCCTCCACTGTTGATCCA+AGG + chr6_3:31696642-31696661 None:intergenic 50.0%
AATGGAAACACTCACCTCGG+GGG - chr6_3:31696910-31696929 Msa0948030:CDS 50.0%
! TATCAAAGTCTTGTCCCCCG+AGG + chr6_3:31696927-31696946 None:intergenic 50.0%
AGCAGTCTTCAGCCTCCTAA+GGG + chr6_3:31697022-31697041 None:intergenic 50.0%
AAGCAGTCTTCAGCCTCCTA+AGG + chr6_3:31697023-31697042 None:intergenic 50.0%
! TTCTGCTCGGTGATTAGTCG+TGG - chr6_3:31697120-31697139 Msa0948030:CDS 50.0%
GGGTGAGAGGCAAAACACTA+AGG - chr6_3:31697590-31697609 Msa0948030:CDS 50.0%
CTAGGAACACCTACTGGACA+TGG + chr6_3:31697654-31697673 None:intergenic 50.0%
CAAGGGAAGACTGTCAAAGG+AGG - chr6_3:31697773-31697792 Msa0948030:intron 50.0%
TTGCAGCTGCATACACTAGC+TGG + chr6_3:31698190-31698209 None:intergenic 50.0%
CTAGTGTATGCAGCTGCAAC+AGG - chr6_3:31698191-31698210 Msa0948030:intron 50.0%
TCCTCGGCAGTTAACTACCG+AGG - chr6_3:31696098-31696117 Msa0948030:CDS 55.0%
ACCTCGGTAGTTAACTGCCG+AGG + chr6_3:31696102-31696121 None:intergenic 55.0%
ACGCCAGTCTACTCGAGATG+CGG - chr6_3:31696699-31696718 Msa0948030:CDS 55.0%
!! GAGATGCGGGTGCTATTGCT+GGG - chr6_3:31696713-31696732 Msa0948030:CDS 55.0%
ATGGAGCTCCAAGAGCCCTT+AGG - chr6_3:31697004-31697023 Msa0948030:CDS 55.0%
TTCAGCCTCCTAAGGGCTCT+TGG + chr6_3:31697015-31697034 None:intergenic 55.0%
! TACTTGTTGGCGGCTCTACC+AGG - chr6_3:31697247-31697266 Msa0948030:CDS 55.0%
GCAGATGAGGCGGTTGCATA+TGG - chr6_3:31697351-31697370 Msa0948030:CDS 55.0%
GGAACACCTACTGGACATGG+AGG + chr6_3:31697651-31697670 None:intergenic 55.0%
CTGCAACAGGTGACATCGCT+GGG - chr6_3:31698204-31698223 Msa0948030:intron 55.0%
TCCTCGGCAGTTAACTACCG+AGG - chr6_3:31696098-31696117 Msa0948030:CDS 55.0%
ACCTCGGTAGTTAACTGCCG+AGG + chr6_3:31696102-31696121 None:intergenic 55.0%
ACGCCAGTCTACTCGAGATG+CGG - chr6_3:31696699-31696718 Msa0948030:CDS 55.0%
!! GAGATGCGGGTGCTATTGCT+GGG - chr6_3:31696713-31696732 Msa0948030:CDS 55.0%
ATGGAGCTCCAAGAGCCCTT+AGG - chr6_3:31697004-31697023 Msa0948030:CDS 55.0%
TTCAGCCTCCTAAGGGCTCT+TGG + chr6_3:31697015-31697034 None:intergenic 55.0%
! TACTTGTTGGCGGCTCTACC+AGG - chr6_3:31697247-31697266 Msa0948030:CDS 55.0%
GCAGATGAGGCGGTTGCATA+TGG - chr6_3:31697351-31697370 Msa0948030:CDS 55.0%
GGAACACCTACTGGACATGG+AGG + chr6_3:31697651-31697670 None:intergenic 55.0%
CTGCAACAGGTGACATCGCT+GGG - chr6_3:31698204-31698223 Msa0948030:intron 55.0%
CCTCGGCAGTTAACTGCAGC+CGG - chr6_3:31696125-31696144 Msa0948030:CDS 60.0%
TCCTCGGCAGTTAACTGCCG+AGG - chr6_3:31696157-31696176 Msa0948030:CDS 60.0%
CCTCGGCAGTTAACTGCCGA+GGG - chr6_3:31696158-31696177 Msa0948030:CDS 60.0%
CTCGGCAGTTAACTGCCGAG+GGG - chr6_3:31696159-31696178 Msa0948030:CDS 60.0%
TCGGCAGTTAACTGCCGAGG+GGG - chr6_3:31696160-31696179 Msa0948030:CDS 60.0%
CGCCAGTCTACTCGAGATGC+GGG - chr6_3:31696700-31696719 Msa0948030:CDS 60.0%
CACCCGCATCTCGAGTAGAC+TGG + chr6_3:31696705-31696724 None:intergenic 60.0%
!! CGAGATGCGGGTGCTATTGC+TGG - chr6_3:31696712-31696731 Msa0948030:CDS 60.0%
GAGCTCCAAGAGCCCTTAGG+AGG - chr6_3:31697007-31697026 Msa0948030:CDS 60.0%
GCTGCAACAGGTGACATCGC+TGG - chr6_3:31698203-31698222 Msa0948030:intron 60.0%
CCTCGGCAGTTAACTGCAGC+CGG - chr6_3:31696125-31696144 Msa0948030:CDS 60.0%
TCCTCGGCAGTTAACTGCCG+AGG - chr6_3:31696157-31696176 Msa0948030:CDS 60.0%
CCTCGGCAGTTAACTGCCGA+GGG - chr6_3:31696158-31696177 Msa0948030:CDS 60.0%
CTCGGCAGTTAACTGCCGAG+GGG - chr6_3:31696159-31696178 Msa0948030:CDS 60.0%
TCGGCAGTTAACTGCCGAGG+GGG - chr6_3:31696160-31696179 Msa0948030:CDS 60.0%
CGCCAGTCTACTCGAGATGC+GGG - chr6_3:31696700-31696719 Msa0948030:CDS 60.0%
CACCCGCATCTCGAGTAGAC+TGG + chr6_3:31696705-31696724 None:intergenic 60.0%
!! CGAGATGCGGGTGCTATTGC+TGG - chr6_3:31696712-31696731 Msa0948030:CDS 60.0%
GAGCTCCAAGAGCCCTTAGG+AGG - chr6_3:31697007-31697026 Msa0948030:CDS 60.0%
GCTGCAACAGGTGACATCGC+TGG - chr6_3:31698203-31698222 Msa0948030:intron 60.0%
CCGGCTGCAGTTAACTGCCG+AGG + chr6_3:31696128-31696147 None:intergenic 65.0%
CCCTCGGCAGTTAACTGCCG+AGG + chr6_3:31696161-31696180 None:intergenic 65.0%
CCGGCTGCAGTTAACTGCCG+AGG + chr6_3:31696128-31696147 None:intergenic 65.0%
CCCTCGGCAGTTAACTGCCG+AGG + chr6_3:31696161-31696180 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 31695846 31698250 31695846 ID=Msa0948030;Name=Msa0948030
chr6_3 mRNA 31695846 31698250 31695846 ID=Msa0948030-mRNA-1;Parent=Msa0948030;Name=Msa0948030-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.5|1|1|2|0|612
chr6_3 exon 31698223 31698250 31698223 ID=Msa0948030-mRNA-1:exon:8322;Parent=Msa0948030-mRNA-1
chr6_3 exon 31695846 31697656 31695846 ID=Msa0948030-mRNA-1:exon:8321;Parent=Msa0948030-mRNA-1
chr6_3 CDS 31698223 31698250 31698223 ID=Msa0948030-mRNA-1:cds;Parent=Msa0948030-mRNA-1
chr6_3 CDS 31695846 31697656 31695846 ID=Msa0948030-mRNA-1:cds;Parent=Msa0948030-mRNA-1
Gene Sequence

>Msa0948030

ATGCCAGGGTTCTACGTAACTGACGTAGATGCAAAGAGGCTAATTGGTCGGAAATTTAGTGATCCCATAGTACAAAGTGATGTGAAGTTGTGGCCATTCAAAGTAATTGGCGACCTGAATGACAAACCCAAGATTGTTGTTAACTATAAAGACGAGGAAAAGCATTTTGCTGCTGAAGAAATCTCATCCATGGTATTGGTGAAAATGCGCGAGATAGCAGAAGCCTTCCTTGGATCAACAGTGGAGGATGTCGTTATAACTGTGCCTGCATACTTTAATGACTCACAACGCCAGTCTACTCGAGATGCGGGTGCTATTGCTGGGCTCAATGTTATGCGAATACTCAATGAGCCTACTGCAGCTGCAATTGCATATGGCCTTGACTTGAAACCATTTAATCATGGATGTAGAAATGTTTTCATTTTTGACTTAGGTGGTGGTACTTTGGACGTGTCTATTCTCACATTTGAGAATGGTGATATCAATGTTAAGGCCATTAATGGAAACACTCACCTCGGGGGACAAGACTTTGATAATGCAATGGTGAACCATTTTGTGAAAGAGTTCTTGAGAAAGCATAAACTGGACATTAATGGAGCTCCAAGAGCCCTTAGGAGGCTGAAGACTGCTTGCGAGAGAGCAAAATGTACACTTTCATCCAATAATGAGACTACCATTGAGATAGATTGTTTATATCAAGGTGAAGATTTCTGCTCGGTGATTAGTCGTGGAATTTTCGACAATCTCAGCTTGAGTCTTTTTGACCAGTGCATGGAGAGTGTAGAAAAGTGTATAGCAGATAGTGGGATAAACAAGAGTAACATTCATGATGTTGTACTTGTTGGCGGCTCTACCAGGATTGTAAAAGTGCAACAACTTTTGATTGATTTCTTTGGAATTAAAAAGGGTAGTGGGACGGAGTTATGCAAAAGCATCAATGCAGATGAGGCGGTTGCATATGGCGCTGCTGTCCATGCTTTTATATTGAGTGGTGAGCTTTGTGAAAAGTTTCAAGATTTGACATTGAGGGAAGTCAATCCTTTGTCCCTTGGAATTGAATTAGAAGGGGGACTCATGAGCATAATAATTCCTAGGAATACCACGATTCCTACCAATATGGAAAACGTATACAACACAATTATACCCAACCAAAAATTTGTGTCAATTAGTGTTTATGAGGGTGAGAGGCAAAACACTAAGGACAACAACTTGCTAGGAACTTTTAGGTTTGAAATTCCTCCATGTCCAGTAGGTGTTCCTAGATTCATGGTCAATTTCCAAATTAACGATGACGGCATCTTAGATGTCTCTGTTTTGGAAAAAGACTTGGGGATTGATAAAAGGTTTAAAATAGTAAATGACAAGGGAAGACTGTCAAAGGAGGAAGTTGAGAGGATGATAAGAGAAGCTGAGAAATACAAAGATGAAGACATGAGGCATAGGAAGAAGGTTGAAGCGAGAAATGCACTACAGACGTACGCATACAATATGAGGGAATTCATAAATGATCCGGATATTAGCTCAAAGCTTTTGTCAAAAGAAAAGGAAAAGATCAATAACGCAATTGATTTGGTCTTTAAGTGGCTTGACGTTAATGTGGTTGCAGAACAACAAGATGTTGAATGTTACAGGAGCATTCTTTCAAGTGTGTTTGACCCAGTTATTATAAAGATGATAAAGGATGAGAGTCATGATGTGGAAGAAGGTACTATGGTTGGGCATCCAGTGAAGAAAAAAAAGAATCGTTGGTTACCAGTATTAGCAAAATATAGTTTCCAGCTAGTGTATGCAGCTGCAACAGGTGACATCGCTGGGATAATATGTTCCATATTTGGTTAG
Protein sequence

>Msa0948030

MPGFYVTDVDAKRLIGRKFSDPIVQSDVKLWPFKVIGDLNDKPKIVVNYKDEEKHFAAEEISSMVLVKMREIAEAFLGSTVEDVVITVPAYFNDSQRQSTRDAGAIAGLNVMRILNEPTAAAIAYGLDLKPFNHGCRNVFIFDLGGGTLDVSILTFENGDINVKAINGNTHLGGQDFDNAMVNHFVKEFLRKHKLDINGAPRALRRLKTACERAKCTLSSNNETTIEIDCLYQGEDFCSVISRGIFDNLSLSLFDQCMESVEKCIADSGINKSNIHDVVLVGGSTRIVKVQQLLIDFFGIKKGSGTELCKSINADEAVAYGAAVHAFILSGELCEKFQDLTLREVNPLSLGIELEGGLMSIIIPRNTTIPTNMENVYNTIIPNQKFVSISVYEGERQNTKDNNLLGTFRFEIPPCPVGVPRFMVNFQINDDGILDVSVLEKDLGIDKRFKIVNDKGRLSKEEVERMIREAEKYKDEDMRHRKKVEARNALQTYAYNMREFINDPDISSKLLSKEKEKINNAIDLVFKWLDVNVVAEQQDVECYRSILSSVFDPVIIKMIKDESHDVEEGTMVGHPVKKKKNRWLPVLAKYSFQLVYAAATGDIAGIICSIFG*