AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984480 MtrunA17_Chr6g0462711 85.167 600 89 0 16 615 74 673 0.0 1056
Msa0984480 MtrunA17_Chr6g0462641 84.718 602 92 0 16 617 72 673 0.0 1049
Msa0984480 MtrunA17_Chr6g0462771 81.770 565 103 0 16 580 72 636 0.0 943
Msa0984480 MtrunA17_Chr6g0462681 73.199 597 155 1 16 612 72 663 0.0 881
Msa0984480 MtrunA17_Chr6g0462611 70.820 610 171 2 3 612 9 611 0.0 870
Msa0984480 MtrunA17_Chr6g0462601 69.763 549 161 1 16 564 72 615 0.0 772
Msa0984480 MtrunA17_Chr7g0223181 62.545 550 200 2 16 564 72 616 0.0 685
Msa0984480 MtrunA17_Chr4g0031301 61.818 550 204 2 16 564 72 616 0.0 681
Msa0984480 MtrunA17_Chr7g0262821 61.775 552 205 2 16 566 72 618 0.0 679
Msa0984480 MtrunA17_Chr7g0223291 61.818 550 204 2 16 564 72 616 0.0 677
Msa0984480 MtrunA17_Chr4g0031321 61.455 550 206 2 16 564 72 616 0.0 676
Msa0984480 MtrunA17_Chr4g0073741 61.273 550 207 2 16 564 71 615 0.0 669
Msa0984480 MtrunA17_Chr6g0462861 58.728 613 218 10 16 617 63 651 0.0 657
Msa0984480 MtrunA17_Chr7g0223711 58.869 513 205 2 16 528 74 580 0.0 603
Msa0984480 MtrunA17_Chr7g0223741 56.929 534 219 3 16 549 74 596 0.0 591
Msa0984480 MtrunA17_Chr7g0223751 57.115 513 213 3 16 528 74 579 0.0 588
Msa0984480 MtrunA17_Chr7g0223541 55.258 561 238 4 7 564 23 573 0.0 582
Msa0984480 MtrunA17_Chr7g0223731 54.628 551 237 4 16 563 74 614 0.0 572
Msa0984480 MtrunA17_Chr7g0223031 56.395 516 212 4 16 528 74 579 0.0 572
Msa0984480 MtrunA17_Chr5g0427901 54.093 562 239 5 16 565 74 628 0.0 561
Msa0984480 MtrunA17_Chr8g0350731 57.310 513 212 3 16 528 102 607 0.0 561
Msa0984480 MtrunA17_Chr2g0293581 56.322 522 221 3 16 536 75 590 0.0 561
Msa0984480 MtrunA17_Chr7g0223801 53.345 553 244 5 16 565 74 615 0.0 559
Msa0984480 MtrunA17_Chr7g0223701 52.870 575 249 7 16 578 74 638 0.0 558
Msa0984480 MtrunA17_Chr7g0233311 54.135 532 237 3 16 546 74 599 0.0 556
Msa0984480 MtrunA17_Chr2g0298851 54.991 551 237 7 16 563 74 616 0.0 556
Msa0984480 MtrunA17_Chr2g0287631 54.529 552 243 4 16 565 74 619 0.0 551
Msa0984480 MtrunA17_Chr7g0223621 55.086 521 227 3 16 536 74 587 0.0 550
Msa0984480 MtrunA17_Chr7g0221661 52.920 548 250 4 16 562 74 614 0.0 549
Msa0984480 MtrunA17_Chr7g0223681 56.250 496 210 3 33 528 2 490 0.0 547
Msa0984480 MtrunA17_Chr7g0248151 55.253 514 222 4 16 528 74 580 0.0 546
Msa0984480 MtrunA17_Chr2g0298861 51.971 558 258 6 11 565 80 630 0.0 546
Msa0984480 MtrunA17_Chr7g0223721 54.839 527 224 5 16 538 74 590 0.0 545
Msa0984480 MtrunA17_Chr7g0248131 55.405 518 220 6 14 528 73 582 0.0 542
Msa0984480 MtrunA17_Chr7g0223851 54.323 532 235 4 16 546 83 607 0.0 541
Msa0984480 MtrunA17_Chr7g0223631 55.750 513 206 6 16 528 74 565 0.0 541
Msa0984480 MtrunA17_Chr7g0225671 54.406 522 229 5 16 536 81 594 0.0 540
Msa0984480 MtrunA17_Chr4g0040931 53.817 524 234 4 16 538 74 590 0.0 540
Msa0984480 MtrunA17_Chr7g0223781 56.360 511 213 3 16 525 74 575 0.0 538
Msa0984480 MtrunA17_Chr2g0284681 50.645 543 247 5 8 547 66 590 0.0 526
Msa0984480 MtrunA17_Chr8g0388761 50.091 549 262 6 16 561 101 640 2.29e-179 523
Msa0984480 MtrunA17_Chr4g0012541 53.537 523 235 4 25 546 74 589 8.67e-179 520
Msa0984480 MtrunA17_Chr8g0388671 50.091 549 262 6 16 561 101 640 4.19e-178 520
Msa0984480 MtrunA17_Chr2g0296391 56.616 461 193 3 16 475 74 528 1.05e-176 512
Msa0984480 MtrunA17_Chr7g0223821 54.269 527 228 6 16 538 74 591 6.54e-176 516
Msa0984480 MtrunA17_Chr7g0233301 51.091 550 230 5 16 563 74 586 5.41e-175 509
Msa0984480 MtrunA17_Chr7g0217971 52.399 521 217 5 16 536 74 563 3.14e-174 508
Msa0984480 MtrunA17_Chr8g0390821 48.913 552 251 5 25 565 124 655 5.81e-164 483
Msa0984480 MtrunA17_Chr7g0228281 47.566 534 223 4 16 546 135 614 4.13e-156 463
Msa0984480 MtrunA17_Chr7g0215261 48.211 531 231 6 16 544 74 562 2.97e-154 456
Msa0984480 MtrunA17_Chr7g0223831 48.780 533 235 7 16 546 74 570 2.06e-152 452
Msa0984480 MtrunA17_Chr2g0293601 53.215 451 170 4 16 465 74 484 1.52e-150 443
Msa0984480 MtrunA17_Chr2g0331381 49.053 475 174 6 16 490 71 477 3.57e-143 424
Msa0984480 MtrunA17_Chr2g0299921 65.337 326 106 2 16 341 1092 1410 1.45e-132 426
Msa0984480 MtrunA17_Chr2g0299921 64.610 308 101 3 16 322 1476 1776 2.43e-122 398
Msa0984480 MtrunA17_Chr6g0462631 62.315 337 78 3 30 364 8 297 1.69e-132 390
Msa0984480 MtrunA17_Chr6g0462751 59.116 362 84 4 2 361 5 304 5.00e-132 389
Msa0984480 MtrunA17_Chr2g0299821 62.382 319 113 2 16 332 72 385 1.56e-129 389
Msa0984480 MtrunA17_Chr2g0299821 47.423 97 41 3 399 487 390 484 1.67e-15 79.7
Msa0984480 MtrunA17_Chr2g0299791 63.975 322 109 2 16 337 1105 1419 4.16e-129 412
Msa0984480 MtrunA17_Chr2g0293561 60.261 307 117 1 16 322 74 375 2.49e-126 378
Msa0984480 MtrunA17_Chr2g0299851 62.037 324 116 2 16 339 1101 1417 4.18e-126 404
Msa0984480 MtrunA17_Chr1g0166551 42.397 559 225 9 7 563 38 501 3.01e-123 374
Msa0984480 MtrunA17_Chr2g0279901 40.741 513 268 9 17 524 121 602 3.58e-121 374
Msa0984480 MtrunA17_Chr2g0299881 60.429 326 118 3 16 337 1101 1419 1.35e-117 382
Msa0984480 MtrunA17_Chr2g0299881 62.121 66 21 1 127 192 1414 1475 6.54e-16 82.0
Msa0984480 MtrunA17_Chr4g0049501 40.076 524 276 11 10 528 114 604 1.63e-117 364
Msa0984480 MtrunA17_Chr2g0277021 39.072 517 289 9 13 524 132 627 3.65e-107 338
Msa0984480 MtrunA17_Chr2g0293271 47.436 390 129 4 16 405 96 409 2.71e-105 324
Msa0984480 MtrunA17_Chr6g0462791 85.311 177 25 1 51 227 2 177 3.64e-101 305
Msa0984480 MtrunA17_Chr1g0151991 63.303 218 80 0 16 233 74 291 8.68e-93 288
Msa0984480 MtrunA17_Chr7g0245521 68.500 200 63 0 16 215 74 273 8.82e-92 284
Msa0984480 MtrunA17_Chr7g0223671 68.557 194 61 0 10 203 2 195 5.46e-90 277
Msa0984480 MtrunA17_Chr1g0188601 65.608 189 65 0 36 224 3 191 7.01e-82 256
Msa0984480 MtrunA17_Chr7g0223761 41.274 361 163 3 187 547 7 318 4.05e-80 256
Msa0984480 MtrunA17_Chr6g0462701 68.108 185 33 2 30 212 8 168 5.43e-78 244
Msa0984480 MtrunA17_Chr7g0245531 44.375 320 170 4 246 564 1 313 6.30e-73 236
Msa0984480 MtrunA17_Chr1g0152001 43.082 318 166 6 257 570 1 307 7.88e-71 231
Msa0984480 MtrunA17_Chr2g0331901 36.170 376 215 7 18 378 68 433 5.22e-65 229
Msa0984480 MtrunA17_Chr7g0223771 66.447 152 51 0 36 187 2 153 2.57e-64 209
Msa0984480 MtrunA17_Chr4g0004331 35.467 375 217 7 18 377 68 432 5.71e-63 223
Msa0984480 MtrunA17_Chr5g0444001 33.787 367 229 4 18 378 68 426 8.71e-59 206
Msa0984480 MtrunA17_Chr7g0223861 70.229 131 39 0 20 150 4 134 1.87e-58 192
Msa0984480 MtrunA17_Chr5g0394391 31.818 440 275 12 16 442 94 521 5.93e-58 204
Msa0984480 MtrunA17_Chr6g0462691 65.306 147 46 1 264 410 1 142 5.57e-56 186
Msa0984480 MtrunA17_Chr4g0046881 63.830 141 48 1 77 217 14 151 5.42e-55 183
Msa0984480 MtrunA17_Chr3g0098761 29.138 429 287 6 18 442 68 483 1.06e-52 193
Msa0984480 MtrunA17_Chr1g0188611 44.161 274 138 5 264 536 1 260 1.09e-51 179
Msa0984480 MtrunA17_Chr5g0394221 34.783 299 181 6 242 537 70 357 6.26e-48 171
Msa0984480 MtrunA17_Chr4g0060241 31.034 406 236 11 60 443 122 505 2.06e-43 163
Msa0984480 MtrunA17_Chr3g0120101 31.379 290 179 4 61 336 137 420 4.44e-42 163
Msa0984480 MtrunA17_Chr4g0064621 30.769 455 285 12 16 453 211 652 3.04e-39 153
Msa0984480 MtrunA17_Chr5g0394231 37.168 226 91 4 16 240 5 180 4.72e-39 142
Msa0984480 MtrunA17_Chr7g0245541 37.811 201 123 2 365 564 1 200 1.08e-32 124
Msa0984480 MtrunA17_Chr6g0462801 83.333 66 11 0 264 329 1 66 3.59e-29 110
Msa0984480 MtrunA17_Chr6g0481391 59.770 87 35 0 15 101 45 131 3.27e-27 107
Msa0984480 MtrunA17_Chr5g0442171 28.783 337 209 13 112 435 1 319 8.81e-27 111
Msa0984480 MtrunA17_Chr4g0046871 56.566 99 37 2 278 376 6 98 1.27e-26 104
Msa0984480 MtrunA17_Chr7g0221651 49.412 85 43 0 157 241 1 85 3.62e-22 91.3
Msa0984480 MtrunA17_Chr6g0481381 59.459 74 30 0 118 191 1 74 6.41e-21 90.9
Msa0984480 MtrunA17_Chr7g0223791 67.273 55 17 1 24 78 37 90 1.02e-16 78.6
Msa0984480 MtrunA17_Chr7g0223791 38.043 92 57 0 430 521 90 181 4.82e-12 65.1
Msa0984480 MtrunA17_Chr7g0223881 48.052 77 39 1 230 306 9 84 1.38e-16 75.1
Msa0984480 MtrunA17_Chr2g0284661 48.193 83 43 0 315 397 61 143 3.26e-15 73.2
Msa0984480 MtrunA17_Chr2g0299891 62.791 43 16 0 257 299 1 43 9.13e-13 63.9
Msa0984480 MtrunA17_Chr7g0223871 36.111 108 69 0 439 546 7 114 1.36e-12 65.5
Msa0984480 MtrunA17_Chr4g0064651 38.947 95 55 2 345 438 29 121 8.91e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984480 AT3G12580.1 61.649 558 208 2 16 572 72 624 0.0 684
Msa0984480 AT5G02500.1 61.775 552 205 2 16 566 72 618 0.0 679
Msa0984480 AT5G02490.1 61.232 552 208 2 16 566 72 618 0.0 674
Msa0984480 AT1G16030.1 60.364 550 212 2 16 564 71 615 0.0 669
Msa0984480 AT3G09440.1 60.909 550 209 2 16 564 72 616 0.0 668
Msa0984480 AT3G09440.4 60.909 550 209 2 16 564 72 616 0.0 668
Msa0984480 AT3G09440.2 60.909 550 209 2 16 564 72 616 0.0 668
Msa0984480 AT3G09440.3 60.909 550 209 2 16 564 72 616 0.0 668
Msa0984480 AT1G56410.1 60.145 552 212 3 16 566 72 616 0.0 650
Msa0984480 AT5G28540.1 49.545 549 265 6 16 561 100 639 1.71e-180 526
Msa0984480 AT5G42020.1 48.998 549 268 6 16 561 100 639 1.44e-178 521
Msa0984480 AT5G42020.3 48.998 549 268 6 16 561 105 644 3.35e-178 521
Msa0984480 AT1G09080.2 50.182 548 262 5 16 561 105 643 1.53e-171 504
Msa0984480 AT1G09080.1 50.182 548 262 5 16 561 115 653 2.22e-171 503
Msa0984480 AT5G02500.2 69.207 328 96 1 16 343 72 394 5.46e-157 461
Msa0984480 AT5G02500.2 45.631 103 56 0 464 566 386 488 4.32e-20 94.4
Msa0984480 AT5G42020.2 48.218 477 235 6 16 489 100 567 7.34e-141 423
Msa0984480 AT5G09590.1 40.504 516 272 10 18 528 125 610 8.13e-118 366
Msa0984480 AT4G37910.1 40.546 513 270 10 17 524 119 601 2.08e-112 352
Msa0984480 AT4G37910.2 40.546 513 270 10 17 524 119 601 2.08e-112 352
Msa0984480 AT4G24280.1 38.846 520 286 10 13 524 141 636 4.53e-108 342
Msa0984480 AT5G49910.1 39.265 517 288 9 13 524 141 636 2.55e-107 340
Msa0984480 AT1G11660.2 29.815 540 314 12 18 505 31 557 9.17e-67 232
Msa0984480 AT1G11660.4 29.815 540 314 12 18 505 68 594 1.88e-66 232
Msa0984480 AT1G11660.3 29.815 540 314 12 18 505 68 594 1.88e-66 232
Msa0984480 AT1G11660.1 29.815 540 314 12 18 505 68 594 1.88e-66 232
Msa0984480 AT1G79920.1 33.600 375 224 6 18 377 68 432 1.93e-62 220
Msa0984480 AT1G79930.2 32.800 375 227 5 18 377 68 432 2.28e-62 221
Msa0984480 AT1G79920.3 33.600 375 224 6 18 377 68 432 2.82e-62 219
Msa0984480 AT1G79920.2 33.600 375 224 6 18 377 68 432 2.82e-62 219
Msa0984480 AT1G79920.4 33.600 375 224 6 18 377 68 432 2.82e-62 219
Msa0984480 AT1G79930.1 32.800 375 227 5 18 377 68 432 3.38e-62 221
Msa0984480 AT2G32120.1 31.724 435 267 11 18 442 97 511 8.07e-53 190
Msa0984480 AT2G32120.2 31.724 435 267 11 18 442 97 511 8.07e-53 190
Msa0984480 AT4G16660.1 28.375 363 230 8 38 379 115 468 1.26e-42 165
Msa0984480 AT4G16660.2 28.375 363 230 8 38 379 139 492 1.37e-42 165

Find 121 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTGGAATTTCATTAAA+AGG 0.127698 6_4:+29233165 Msa0984480:CDS
CATTAATGGTCATAGAATTT+TGG 0.153539 6_4:-29233269 None:intergenic
GGGATAATATGTTCCATATT+TGG 0.158546 6_4:+29233933 Msa0984480:CDS
CAATCTTGGGTTTGTCATTC+AGG 0.164292 6_4:-29232234 None:intergenic
TGATTTCTTTGGAATTAAAA+AGG 0.174810 6_4:+29233005 Msa0984480:CDS
TTTATCATCTTTATAATAAC+TGG 0.184904 6_4:-29233777 None:intergenic
AGATGCCATCATCATTAATT+TGG 0.207387 6_4:-29233398 None:intergenic
CTTCACATCACTTTGTACTA+TGG 0.218734 6_4:-29232185 None:intergenic
TCAAGAACTCTTTCACAAAA+TGG 0.228946 6_4:-29232669 None:intergenic
TTTCTACATCCATGATTAAA+TGG 0.230034 6_4:-29232511 None:intergenic
AAACCTTGGGAATTGATAAA+AGG 0.237528 6_4:+29233442 Msa0984480:CDS
CGAGATGCGGGTGCTATTGC+TGG 0.247069 6_4:+29232421 Msa0984480:CDS
ATCAATGTTAAGGCCATTAA+TGG 0.251715 6_4:+29232601 Msa0984480:CDS
CCGATATCACTAACCAAATA+TGG 0.253413 6_4:-29233946 None:intergenic
CTCAATGGTAGTCTCATTAT+TGG 0.265538 6_4:-29232779 None:intergenic
CTCACCTTCATAAACATTAA+TGG 0.297594 6_4:-29233283 None:intergenic
TTGTGGCCATTCAAAGTAAT+TGG 0.308051 6_4:+29232208 Msa0984480:CDS
GATCAATAACGCAATTGATT+TGG 0.318163 6_4:+29233671 Msa0984480:CDS
GAAAAGTGTATAGCAGATAG+TGG 0.320337 6_4:+29232904 Msa0984480:CDS
AAGCATAAACTGGACATTAA+TGG 0.323307 6_4:+29232694 Msa0984480:CDS
TTTATAGTTAACAACAATCT+TGG 0.329217 6_4:-29232248 None:intergenic
AACAAGATGTTGAATGTTAC+AGG 0.341170 6_4:+29233730 Msa0984480:CDS
GTAGATGCAAAGAGGCTAAT+TGG 0.349795 6_4:+29232145 Msa0984480:CDS
TGGAAGTTGACCACGACATT+AGG 0.349850 6_4:-29233378 None:intergenic
CCCTTGGAATTTCATTAAAA+GGG 0.360741 6_4:+29233166 Msa0984480:CDS
GAGGTGAGTGTTTCCATTAA+TGG 0.365592 6_4:-29232614 None:intergenic
TACTTGTTGGCGGCTCTACC+AGG 0.374585 6_4:+29232956 Msa0984480:CDS
GAAATTCCTCCACTTCCATT+AGG 0.377008 6_4:+29233351 Msa0984480:CDS
AGGTCGCCAATTACTTTGAA+TGG 0.384331 6_4:-29232214 None:intergenic
GGTGATATAATCTTCCATAT+TGG 0.391334 6_4:-29233232 None:intergenic
TTCAGCCTCCTAAGGGCTCT+TGG 0.391620 6_4:-29232721 None:intergenic
ACTGCAGCTGCAATTGCATA+TGG 0.397260 6_4:+29232475 Msa0984480:CDS
GTTCTTGAGAAAGCATAAAC+TGG 0.398018 6_4:+29232684 Msa0984480:CDS
TACCACGATTCCTACCAATA+TGG 0.401993 6_4:+29233218 Msa0984480:CDS
GAGATAGATTGTTTATATCA+AGG 0.411404 6_4:+29232799 Msa0984480:CDS
TTATAGTTAACAACAATCTT+GGG 0.415187 6_4:-29232247 None:intergenic
GCAGATGAGGCGGTTGCATA+TGG 0.426167 6_4:+29233060 Msa0984480:CDS
AGTTATTATAAAGATGATAA+AGG 0.430494 6_4:+29233779 Msa0984480:CDS
CTAGTGTATGCAGCTGCAAC+AGG 0.436772 6_4:+29233900 Msa0984480:CDS
ATGACCATTAATGTTTATGA+AGG 0.439624 6_4:+29233279 Msa0984480:CDS
AGAAGTACGCATACAATATG+AGG 0.443058 6_4:+29233592 Msa0984480:CDS
GAAGTCAATCCTTTGTCCCT+TGG 0.452402 6_4:+29233150 Msa0984480:CDS
GACTTGAAACCATTTAATCA+TGG 0.458525 6_4:+29232502 Msa0984480:CDS
ATTCATGATGTTGTACTTGT+TGG 0.459356 6_4:+29232943 Msa0984480:CDS
GCTGCAACAGGTGACATCGC+TGG 0.460468 6_4:+29233912 Msa0984480:CDS
TTGCAGCTGCATACACTAGC+TGG 0.462459 6_4:-29233896 None:intergenic
CAATTGATTTGGTCTTTAAG+TGG 0.466895 6_4:+29233682 Msa0984480:CDS
AAGCAGTCTTCAGCCTCCTA+AGG 0.471270 6_4:-29232729 None:intergenic
GTTTCAAGATTTGAAATTGA+GGG 0.472090 6_4:+29233128 Msa0984480:CDS
TCTATTCTCACATTTGAGAA+TGG 0.472623 6_4:+29232574 Msa0984480:CDS
AAGATGAAGACATGAGGTAT+AGG 0.472831 6_4:+29233541 Msa0984480:CDS
AGAAATCTCATCCATGGTAT+TGG 0.472859 6_4:+29232297 Msa0984480:CDS
TTCACATCACTTTGTACTAT+GGG 0.473297 6_4:-29232184 None:intergenic
AACTTCCAAATTAATGATGA+TGG 0.473962 6_4:+29233393 Msa0984480:CDS
TCAAGGTGAAGATTTCTTCT+CGG 0.480825 6_4:+29232816 Msa0984480:CDS
CATCTTAAACGTCTCTGTTA+CGG 0.481358 6_4:+29233416 Msa0984480:CDS
TGACTTAGGTGGTGGTACTT+TGG 0.488748 6_4:+29232546 Msa0984480:CDS
CATGATGTTGTACTTGTTGG+CGG 0.491200 6_4:+29232946 Msa0984480:CDS
GAATGGTGATATCAATGTTA+AGG 0.496210 6_4:+29232591 Msa0984480:CDS
AGTTTCAAGATTTGAAATTG+AGG 0.497391 6_4:+29233127 Msa0984480:CDS
GAGGGATTTCATAAATGATC+CGG 0.498186 6_4:+29233611 Msa0984480:CDS
TGGAAGAAGGTACTATGGTT+GGG 0.498306 6_4:+29233817 Msa0984480:CDS
GAGAGTCATGATGTGGAAGA+AGG 0.500125 6_4:+29233804 Msa0984480:CDS
AAAAGCTTTGAGCTAATATC+CGG 0.503920 6_4:-29233630 None:intergenic
TCATGGACATAATAATTCCT+AGG 0.505162 6_4:+29233193 Msa0984480:CDS
CTGCAACAGGTGACATCGCT+GGG 0.505638 6_4:+29233913 Msa0984480:CDS
TTCTTCTCGGTGATTAGTCG+TGG 0.507522 6_4:+29232829 Msa0984480:CDS
GTAGGAATCGTGGTATTCCT+AGG 0.508582 6_4:-29233210 None:intergenic
CGCCAGTCTACTCGAGATGC+GGG 0.512866 6_4:+29232409 Msa0984480:CDS
TATGCAATTGCAGCTGCAGT+AGG 0.513219 6_4:-29232472 None:intergenic
TTAATGGAAACACTCACCTC+GGG 0.518000 6_4:+29232617 Msa0984480:CDS
AGACATGAGGTATAGGAAGA+AGG 0.520191 6_4:+29233548 Msa0984480:CDS
ACGACATTAGGATCACCTAA+TGG 0.522372 6_4:-29233366 None:intergenic
ATGGAGCTCCAAGAGCCCTT+AGG 0.524597 6_4:+29232713 Msa0984480:CDS
ATATAAACAATCTATCTCAA+TGG 0.530635 6_4:-29232794 None:intergenic
TGATGTGGAAGAAGGTACTA+TGG 0.531056 6_4:+29233812 Msa0984480:CDS
TTATCATCTTTATAATAACT+GGG 0.532361 6_4:-29233776 None:intergenic
GAGATGCGGGTGCTATTGCT+GGG 0.535258 6_4:+29232422 Msa0984480:CDS
GAGATAGCAGAAGCCTTCCT+TGG 0.535837 6_4:+29232331 Msa0984480:CDS
TTAGGATCACCTAATGGAAG+TGG 0.537480 6_4:-29233360 None:intergenic
TGTGAGTCATTAAAGTATGC+AGG 0.543697 6_4:-29232385 None:intergenic
GCAAAGGACAACAACTTGCT+AGG 0.549039 6_4:+29233315 Msa0984480:CDS
TGCTGAAGAAATCTCATCCA+TGG 0.556490 6_4:+29232291 Msa0984480:CDS
TTTCTACACTCTCCATGCAC+TGG 0.557402 6_4:-29232885 None:intergenic
AATGAAATTCCAAGGGACAA+AGG 0.564609 6_4:-29233159 None:intergenic
GATTAAATGGTTTCAAGTCA+AGG 0.567176 6_4:-29232498 None:intergenic
AAAAGTGTATAGCAGATAGT+GGG 0.567377 6_4:+29232905 Msa0984480:CDS
ATTAATGGAAACACTCACCT+CGG 0.576499 6_4:+29232616 Msa0984480:CDS
CCTTGGAATTTCATTAAAAG+GGG 0.578244 6_4:+29233167 Msa0984480:CDS
CTCCACTGTTGATCCAAGGA+AGG 0.579052 6_4:-29232344 None:intergenic
ATATAATCTTCCATATTGGT+AGG 0.590102 6_4:-29233228 None:intergenic
GTGGAAGAAGGTACTATGGT+TGG 0.590899 6_4:+29233816 Msa0984480:CDS
ATGCAAAGAGGCTAATTGGT+CGG 0.607730 6_4:+29232149 Msa0984480:CDS
TTCCATATTGGTAGGAATCG+TGG 0.609117 6_4:-29233220 None:intergenic
GAGCTCCAAGAGCCCTTAGG+AGG 0.610393 6_4:+29232716 Msa0984480:CDS
TTAATGTTTATGAAGGTGAG+AGG 0.610903 6_4:+29233286 Msa0984480:CDS
CACCACTCACTATAAAAGCA+TGG 0.613678 6_4:-29233092 None:intergenic
CTTGGAATTTCATTAAAAGG+GGG 0.613847 6_4:+29233168 Msa0984480:CDS
GGATCACCTAATGGAAGTGG+AGG 0.615891 6_4:-29233357 None:intergenic
ACAAGACTTTGATAATGCAA+TGG 0.631727 6_4:+29232642 Msa0984480:CDS
GTTTAAAATAGTAAATGACA+AGG 0.632540 6_4:+29233464 Msa0984480:CDS
TGACAAAGGAGGAAATTGAG+AGG 0.632700 6_4:+29233493 Msa0984480:CDS
CATCCTCCACTGTTGATCCA+AGG 0.634949 6_4:-29232348 None:intergenic
TAAGTGGCTTGACGTTAATG+TGG 0.637283 6_4:+29233698 Msa0984480:CDS
AGCAGTCTTCAGCCTCCTAA+GGG 0.637340 6_4:-29232728 None:intergenic
TTTAAAATAGTAAATGACAA+GGG 0.637775 6_4:+29233465 Msa0984480:CDS
GAAGTACGCATACAATATGA+GGG 0.639757 6_4:+29233593 Msa0984480:CDS
TGACAAGGGAAGACTGACAA+AGG 0.640280 6_4:+29233479 Msa0984480:CDS
AGGTGAGAGGCAAATAGCAA+AGG 0.643544 6_4:+29233299 Msa0984480:CDS
CAAGGGAAGACTGACAAAGG+AGG 0.647830 6_4:+29233482 Msa0984480:CDS
AAGCATCAATGCAGATGAGG+CGG 0.648135 6_4:+29233050 Msa0984480:CDS
TACAAAGTGATGTGAAGTTG+TGG 0.650178 6_4:+29232191 Msa0984480:CDS
CAAAAGCATCAATGCAGATG+AGG 0.653789 6_4:+29233047 Msa0984480:CDS
AAAGGATGAGAGTCATGATG+TGG 0.658158 6_4:+29233797 Msa0984480:CDS
ATTAGGTGATCCTAATGTCG+TGG 0.661561 6_4:+29233368 Msa0984480:CDS
CTTCCTTGGATCAACAGTGG+AGG 0.663613 6_4:+29232345 Msa0984480:CDS
TAATGGAAACACTCACCTCG+GGG 0.663720 6_4:+29232618 Msa0984480:CDS
AGCCTTCCTTGGATCAACAG+TGG 0.666700 6_4:+29232342 Msa0984480:CDS
TGTTGTTAACTATAAAGACG+AGG 0.695452 6_4:+29232255 Msa0984480:CDS
CGTACAAAGATGAAGACATG+AGG 0.703181 6_4:+29233535 Msa0984480:CDS
AATGGAAACACTCACCTCGG+GGG 0.728191 6_4:+29232619 Msa0984480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATAGTAAATGACAA+GGG + chr6_4:29233465-29233484 Msa0984480:CDS 15.0%
!! TTATCATCTTTATAATAACT+GGG - chr6_4:29233779-29233798 None:intergenic 15.0%
!! TTTATCATCTTTATAATAAC+TGG - chr6_4:29233780-29233799 None:intergenic 15.0%
!! AGTTATTATAAAGATGATAA+AGG + chr6_4:29233779-29233798 Msa0984480:CDS 15.0%
!!! TTTAAAATAGTAAATGACAA+GGG + chr6_4:29233465-29233484 Msa0984480:CDS 15.0%
!! TTATCATCTTTATAATAACT+GGG - chr6_4:29233779-29233798 None:intergenic 15.0%
!! TTTATCATCTTTATAATAAC+TGG - chr6_4:29233780-29233799 None:intergenic 15.0%
!! AGTTATTATAAAGATGATAA+AGG + chr6_4:29233779-29233798 Msa0984480:CDS 15.0%
!! TTATAGTTAACAACAATCTT+GGG - chr6_4:29232250-29232269 None:intergenic 20.0%
!! TTTATAGTTAACAACAATCT+TGG - chr6_4:29232251-29232270 None:intergenic 20.0%
!!! AATGTTTTCATTTTTGACTT+AGG + chr6_4:29232532-29232551 Msa0984480:CDS 20.0%
!! ATATAAACAATCTATCTCAA+TGG - chr6_4:29232797-29232816 None:intergenic 20.0%
!!! TGATTTCTTTGGAATTAAAA+AGG + chr6_4:29233005-29233024 Msa0984480:CDS 20.0%
!!! GATTTCTTTGGAATTAAAAA+GGG + chr6_4:29233006-29233025 Msa0984480:CDS 20.0%
!!! GTTTAAAATAGTAAATGACA+AGG + chr6_4:29233464-29233483 Msa0984480:CDS 20.0%
!!! AAACTATATTTTGCTAATAC+TGG - chr6_4:29233876-29233895 None:intergenic 20.0%
!! TTATAGTTAACAACAATCTT+GGG - chr6_4:29232250-29232269 None:intergenic 20.0%
!! TTTATAGTTAACAACAATCT+TGG - chr6_4:29232251-29232270 None:intergenic 20.0%
!!! AATGTTTTCATTTTTGACTT+AGG + chr6_4:29232532-29232551 Msa0984480:CDS 20.0%
!! ATATAAACAATCTATCTCAA+TGG - chr6_4:29232797-29232816 None:intergenic 20.0%
!!! TGATTTCTTTGGAATTAAAA+AGG + chr6_4:29233005-29233024 Msa0984480:CDS 20.0%
!!! GATTTCTTTGGAATTAAAAA+GGG + chr6_4:29233006-29233025 Msa0984480:CDS 20.0%
!!! GTTTAAAATAGTAAATGACA+AGG + chr6_4:29233464-29233483 Msa0984480:CDS 20.0%
!!! AAACTATATTTTGCTAATAC+TGG - chr6_4:29233876-29233895 None:intergenic 20.0%
! TTTCTACATCCATGATTAAA+TGG - chr6_4:29232514-29232533 None:intergenic 25.0%
! GAGATAGATTGTTTATATCA+AGG + chr6_4:29232799-29232818 Msa0984480:CDS 25.0%
!!! CAACTTTTGATTGATTTCTT+TGG + chr6_4:29232994-29233013 Msa0984480:CDS 25.0%
!! AGTTTCAAGATTTGAAATTG+AGG + chr6_4:29233127-29233146 Msa0984480:CDS 25.0%
!! GTTTCAAGATTTGAAATTGA+GGG + chr6_4:29233128-29233147 Msa0984480:CDS 25.0%
! ATATAATCTTCCATATTGGT+AGG - chr6_4:29233231-29233250 None:intergenic 25.0%
!! CATTAATGGTCATAGAATTT+TGG - chr6_4:29233272-29233291 None:intergenic 25.0%
! ATGACCATTAATGTTTATGA+AGG + chr6_4:29233279-29233298 Msa0984480:CDS 25.0%
! AACTTCCAAATTAATGATGA+TGG + chr6_4:29233393-29233412 Msa0984480:CDS 25.0%
!! AAAGCTTTTGTCAAAAGAAA+AGG + chr6_4:29233644-29233663 Msa0984480:CDS 25.0%
! TGAAGAAAAAAAAGAATCGT+TGG + chr6_4:29233847-29233866 Msa0984480:CDS 25.0%
! TTTCTACATCCATGATTAAA+TGG - chr6_4:29232514-29232533 None:intergenic 25.0%
! GAGATAGATTGTTTATATCA+AGG + chr6_4:29232799-29232818 Msa0984480:CDS 25.0%
!!! CAACTTTTGATTGATTTCTT+TGG + chr6_4:29232994-29233013 Msa0984480:CDS 25.0%
!! AGTTTCAAGATTTGAAATTG+AGG + chr6_4:29233127-29233146 Msa0984480:CDS 25.0%
!! GTTTCAAGATTTGAAATTGA+GGG + chr6_4:29233128-29233147 Msa0984480:CDS 25.0%
! ATATAATCTTCCATATTGGT+AGG - chr6_4:29233231-29233250 None:intergenic 25.0%
!! CATTAATGGTCATAGAATTT+TGG - chr6_4:29233272-29233291 None:intergenic 25.0%
! ATGACCATTAATGTTTATGA+AGG + chr6_4:29233279-29233298 Msa0984480:CDS 25.0%
! AACTTCCAAATTAATGATGA+TGG + chr6_4:29233393-29233412 Msa0984480:CDS 25.0%
!! AAAGCTTTTGTCAAAAGAAA+AGG + chr6_4:29233644-29233663 Msa0984480:CDS 25.0%
! TGAAGAAAAAAAAGAATCGT+TGG + chr6_4:29233847-29233866 Msa0984480:CDS 25.0%
!!! TTTGTTTTGTAGATGCAAAG+AGG + chr6_4:29232137-29232156 Msa0984480:CDS 30.0%
TTCACATCACTTTGTACTAT+GGG - chr6_4:29232187-29232206 None:intergenic 30.0%
TGTTGTTAACTATAAAGACG+AGG + chr6_4:29232255-29232274 Msa0984480:CDS 30.0%
! GATTAAATGGTTTCAAGTCA+AGG - chr6_4:29232501-29232520 None:intergenic 30.0%
GACTTGAAACCATTTAATCA+TGG + chr6_4:29232502-29232521 Msa0984480:CDS 30.0%
!!! GTTTTCATTTTTGACTTAGG+TGG + chr6_4:29232535-29232554 Msa0984480:CDS 30.0%
TCTATTCTCACATTTGAGAA+TGG + chr6_4:29232574-29232593 Msa0984480:CDS 30.0%
GAATGGTGATATCAATGTTA+AGG + chr6_4:29232591-29232610 Msa0984480:CDS 30.0%
ATCAATGTTAAGGCCATTAA+TGG + chr6_4:29232601-29232620 Msa0984480:CDS 30.0%
!! ACAAGACTTTGATAATGCAA+TGG + chr6_4:29232642-29232661 Msa0984480:CDS 30.0%
TCAAGAACTCTTTCACAAAA+TGG - chr6_4:29232672-29232691 None:intergenic 30.0%
AAGCATAAACTGGACATTAA+TGG + chr6_4:29232694-29232713 Msa0984480:CDS 30.0%
! AAAAGTGTATAGCAGATAGT+GGG + chr6_4:29232905-29232924 Msa0984480:CDS 30.0%
ATTCATGATGTTGTACTTGT+TGG + chr6_4:29232943-29232962 Msa0984480:CDS 30.0%
! TTTGGAATTAAAAAGGGTAG+TGG + chr6_4:29233012-29233031 Msa0984480:CDS 30.0%
TTGGAATTAAAAAGGGTAGT+GGG + chr6_4:29233013-29233032 Msa0984480:CDS 30.0%
TCCCTTGGAATTTCATTAAA+AGG + chr6_4:29233165-29233184 Msa0984480:CDS 30.0%
! CCCTTTTAATGAAATTCCAA+GGG - chr6_4:29233169-29233188 None:intergenic 30.0%
CCCTTGGAATTTCATTAAAA+GGG + chr6_4:29233166-29233185 Msa0984480:CDS 30.0%
CCTTGGAATTTCATTAAAAG+GGG + chr6_4:29233167-29233186 Msa0984480:CDS 30.0%
CTTGGAATTTCATTAAAAGG+GGG + chr6_4:29233168-29233187 Msa0984480:CDS 30.0%
TCATGGACATAATAATTCCT+AGG + chr6_4:29233193-29233212 Msa0984480:CDS 30.0%
GGTGATATAATCTTCCATAT+TGG - chr6_4:29233235-29233254 None:intergenic 30.0%
!!! ATGGTCATAGAATTTTGGTT+GGG - chr6_4:29233267-29233286 None:intergenic 30.0%
!! AATGGTCATAGAATTTTGGT+TGG - chr6_4:29233268-29233287 None:intergenic 30.0%
CTCACCTTCATAAACATTAA+TGG - chr6_4:29233286-29233305 None:intergenic 30.0%
TTAATGTTTATGAAGGTGAG+AGG + chr6_4:29233286-29233305 Msa0984480:CDS 30.0%
AGATGCCATCATCATTAATT+TGG - chr6_4:29233401-29233420 None:intergenic 30.0%
AAACCTTGGGAATTGATAAA+AGG + chr6_4:29233442-29233461 Msa0984480:CDS 30.0%
! AAACCTTTTATCAATTCCCA+AGG - chr6_4:29233448-29233467 None:intergenic 30.0%
!! AAAAGCTTTGAGCTAATATC+CGG - chr6_4:29233633-29233652 None:intergenic 30.0%
GATCAATAACGCAATTGATT+TGG + chr6_4:29233671-29233690 Msa0984480:CDS 30.0%
!! CAATTGATTTGGTCTTTAAG+TGG + chr6_4:29233682-29233701 Msa0984480:CDS 30.0%
AACAAGATGTTGAATGTTAC+AGG + chr6_4:29233730-29233749 Msa0984480:CDS 30.0%
!!! CGATTCTTTTTTTTCTTCAC+TGG - chr6_4:29233846-29233865 None:intergenic 30.0%
GGGATAATATGTTCCATATT+TGG + chr6_4:29233933-29233952 Msa0984480:CDS 30.0%
!!! TTTGTTTTGTAGATGCAAAG+AGG + chr6_4:29232137-29232156 Msa0984480:CDS 30.0%
TTCACATCACTTTGTACTAT+GGG - chr6_4:29232187-29232206 None:intergenic 30.0%
TGTTGTTAACTATAAAGACG+AGG + chr6_4:29232255-29232274 Msa0984480:CDS 30.0%
! GATTAAATGGTTTCAAGTCA+AGG - chr6_4:29232501-29232520 None:intergenic 30.0%
GACTTGAAACCATTTAATCA+TGG + chr6_4:29232502-29232521 Msa0984480:CDS 30.0%
!!! GTTTTCATTTTTGACTTAGG+TGG + chr6_4:29232535-29232554 Msa0984480:CDS 30.0%
TCTATTCTCACATTTGAGAA+TGG + chr6_4:29232574-29232593 Msa0984480:CDS 30.0%
GAATGGTGATATCAATGTTA+AGG + chr6_4:29232591-29232610 Msa0984480:CDS 30.0%
ATCAATGTTAAGGCCATTAA+TGG + chr6_4:29232601-29232620 Msa0984480:CDS 30.0%
!! ACAAGACTTTGATAATGCAA+TGG + chr6_4:29232642-29232661 Msa0984480:CDS 30.0%
TCAAGAACTCTTTCACAAAA+TGG - chr6_4:29232672-29232691 None:intergenic 30.0%
AAGCATAAACTGGACATTAA+TGG + chr6_4:29232694-29232713 Msa0984480:CDS 30.0%
! AAAAGTGTATAGCAGATAGT+GGG + chr6_4:29232905-29232924 Msa0984480:CDS 30.0%
ATTCATGATGTTGTACTTGT+TGG + chr6_4:29232943-29232962 Msa0984480:CDS 30.0%
! TTTGGAATTAAAAAGGGTAG+TGG + chr6_4:29233012-29233031 Msa0984480:CDS 30.0%
TTGGAATTAAAAAGGGTAGT+GGG + chr6_4:29233013-29233032 Msa0984480:CDS 30.0%
TCCCTTGGAATTTCATTAAA+AGG + chr6_4:29233165-29233184 Msa0984480:CDS 30.0%
! CCCTTTTAATGAAATTCCAA+GGG - chr6_4:29233169-29233188 None:intergenic 30.0%
CCCTTGGAATTTCATTAAAA+GGG + chr6_4:29233166-29233185 Msa0984480:CDS 30.0%
CCTTGGAATTTCATTAAAAG+GGG + chr6_4:29233167-29233186 Msa0984480:CDS 30.0%
CTTGGAATTTCATTAAAAGG+GGG + chr6_4:29233168-29233187 Msa0984480:CDS 30.0%
TCATGGACATAATAATTCCT+AGG + chr6_4:29233193-29233212 Msa0984480:CDS 30.0%
GGTGATATAATCTTCCATAT+TGG - chr6_4:29233235-29233254 None:intergenic 30.0%
!!! ATGGTCATAGAATTTTGGTT+GGG - chr6_4:29233267-29233286 None:intergenic 30.0%
!! AATGGTCATAGAATTTTGGT+TGG - chr6_4:29233268-29233287 None:intergenic 30.0%
CTCACCTTCATAAACATTAA+TGG - chr6_4:29233286-29233305 None:intergenic 30.0%
TTAATGTTTATGAAGGTGAG+AGG + chr6_4:29233286-29233305 Msa0984480:CDS 30.0%
AGATGCCATCATCATTAATT+TGG - chr6_4:29233401-29233420 None:intergenic 30.0%
AAACCTTGGGAATTGATAAA+AGG + chr6_4:29233442-29233461 Msa0984480:CDS 30.0%
! AAACCTTTTATCAATTCCCA+AGG - chr6_4:29233448-29233467 None:intergenic 30.0%
!! AAAAGCTTTGAGCTAATATC+CGG - chr6_4:29233633-29233652 None:intergenic 30.0%
GATCAATAACGCAATTGATT+TGG + chr6_4:29233671-29233690 Msa0984480:CDS 30.0%
!! CAATTGATTTGGTCTTTAAG+TGG + chr6_4:29233682-29233701 Msa0984480:CDS 30.0%
AACAAGATGTTGAATGTTAC+AGG + chr6_4:29233730-29233749 Msa0984480:CDS 30.0%
!!! CGATTCTTTTTTTTCTTCAC+TGG - chr6_4:29233846-29233865 None:intergenic 30.0%
GGGATAATATGTTCCATATT+TGG + chr6_4:29233933-29233952 Msa0984480:CDS 30.0%
CTTCACATCACTTTGTACTA+TGG - chr6_4:29232188-29232207 None:intergenic 35.0%
TACAAAGTGATGTGAAGTTG+TGG + chr6_4:29232191-29232210 Msa0984480:CDS 35.0%
TTGTGGCCATTCAAAGTAAT+TGG + chr6_4:29232208-29232227 Msa0984480:CDS 35.0%
AGAAATCTCATCCATGGTAT+TGG + chr6_4:29232297-29232316 Msa0984480:CDS 35.0%
TGTGAGTCATTAAAGTATGC+AGG - chr6_4:29232388-29232407 None:intergenic 35.0%
!!! TTCATTTTTGACTTAGGTGG+TGG + chr6_4:29232538-29232557 Msa0984480:CDS 35.0%
ATTAATGGAAACACTCACCT+CGG + chr6_4:29232616-29232635 Msa0984480:CDS 35.0%
! GTTCTTGAGAAAGCATAAAC+TGG + chr6_4:29232684-29232703 Msa0984480:CDS 35.0%
CTCAATGGTAGTCTCATTAT+TGG - chr6_4:29232782-29232801 None:intergenic 35.0%
TCAAGGTGAAGATTTCTTCT+CGG + chr6_4:29232816-29232835 Msa0984480:CDS 35.0%
! GAAAAGTGTATAGCAGATAG+TGG + chr6_4:29232904-29232923 Msa0984480:CDS 35.0%
! TTGTTGCACTTTTACAATCC+TGG - chr6_4:29232977-29232996 None:intergenic 35.0%
!! AATTAAAAAGGGTAGTGGGA+CGG + chr6_4:29233017-29233036 Msa0984480:CDS 35.0%
AATGAAATTCCAAGGGACAA+AGG - chr6_4:29233162-29233181 None:intergenic 35.0%
! CCCCTTTTAATGAAATTCCA+AGG - chr6_4:29233170-29233189 None:intergenic 35.0%
CATCTTAAACGTCTCTGTTA+CGG + chr6_4:29233416-29233435 Msa0984480:CDS 35.0%
TCTGTTACGGAAAAAACCTT+GGG + chr6_4:29233429-29233448 Msa0984480:CDS 35.0%
AAGATGAAGACATGAGGTAT+AGG + chr6_4:29233541-29233560 Msa0984480:CDS 35.0%
! AGAAGTACGCATACAATATG+AGG + chr6_4:29233592-29233611 Msa0984480:CDS 35.0%
GAAGTACGCATACAATATGA+GGG + chr6_4:29233593-29233612 Msa0984480:CDS 35.0%
GAGGGATTTCATAAATGATC+CGG + chr6_4:29233611-29233630 Msa0984480:CDS 35.0%
CTTCACATCACTTTGTACTA+TGG - chr6_4:29232188-29232207 None:intergenic 35.0%
TACAAAGTGATGTGAAGTTG+TGG + chr6_4:29232191-29232210 Msa0984480:CDS 35.0%
TTGTGGCCATTCAAAGTAAT+TGG + chr6_4:29232208-29232227 Msa0984480:CDS 35.0%
AGAAATCTCATCCATGGTAT+TGG + chr6_4:29232297-29232316 Msa0984480:CDS 35.0%
TGTGAGTCATTAAAGTATGC+AGG - chr6_4:29232388-29232407 None:intergenic 35.0%
!!! TTCATTTTTGACTTAGGTGG+TGG + chr6_4:29232538-29232557 Msa0984480:CDS 35.0%
ATTAATGGAAACACTCACCT+CGG + chr6_4:29232616-29232635 Msa0984480:CDS 35.0%
! GTTCTTGAGAAAGCATAAAC+TGG + chr6_4:29232684-29232703 Msa0984480:CDS 35.0%
CTCAATGGTAGTCTCATTAT+TGG - chr6_4:29232782-29232801 None:intergenic 35.0%
TCAAGGTGAAGATTTCTTCT+CGG + chr6_4:29232816-29232835 Msa0984480:CDS 35.0%
! GAAAAGTGTATAGCAGATAG+TGG + chr6_4:29232904-29232923 Msa0984480:CDS 35.0%
! TTGTTGCACTTTTACAATCC+TGG - chr6_4:29232977-29232996 None:intergenic 35.0%
!! AATTAAAAAGGGTAGTGGGA+CGG + chr6_4:29233017-29233036 Msa0984480:CDS 35.0%
AATGAAATTCCAAGGGACAA+AGG - chr6_4:29233162-29233181 None:intergenic 35.0%
! CCCCTTTTAATGAAATTCCA+AGG - chr6_4:29233170-29233189 None:intergenic 35.0%
CATCTTAAACGTCTCTGTTA+CGG + chr6_4:29233416-29233435 Msa0984480:CDS 35.0%
TCTGTTACGGAAAAAACCTT+GGG + chr6_4:29233429-29233448 Msa0984480:CDS 35.0%
AAGATGAAGACATGAGGTAT+AGG + chr6_4:29233541-29233560 Msa0984480:CDS 35.0%
! AGAAGTACGCATACAATATG+AGG + chr6_4:29233592-29233611 Msa0984480:CDS 35.0%
GAAGTACGCATACAATATGA+GGG + chr6_4:29233593-29233612 Msa0984480:CDS 35.0%
GAGGGATTTCATAAATGATC+CGG + chr6_4:29233611-29233630 Msa0984480:CDS 35.0%
GTAGATGCAAAGAGGCTAAT+TGG + chr6_4:29232145-29232164 Msa0984480:CDS 40.0%
ATGCAAAGAGGCTAATTGGT+CGG + chr6_4:29232149-29232168 Msa0984480:CDS 40.0%
AGGTCGCCAATTACTTTGAA+TGG - chr6_4:29232217-29232236 None:intergenic 40.0%
CAATCTTGGGTTTGTCATTC+AGG - chr6_4:29232237-29232256 None:intergenic 40.0%
TGCTGAAGAAATCTCATCCA+TGG + chr6_4:29232291-29232310 Msa0984480:CDS 40.0%
GAGGTGAGTGTTTCCATTAA+TGG - chr6_4:29232617-29232636 None:intergenic 40.0%
TTAATGGAAACACTCACCTC+GGG + chr6_4:29232617-29232636 Msa0984480:CDS 40.0%
! CATGATGTTGTACTTGTTGG+CGG + chr6_4:29232946-29232965 Msa0984480:CDS 40.0%
!! CAAAAGCATCAATGCAGATG+AGG + chr6_4:29233047-29233066 Msa0984480:CDS 40.0%
! GTCCATGCTTTTATAGTGAG+TGG + chr6_4:29233090-29233109 Msa0984480:CDS 40.0%
CACCACTCACTATAAAAGCA+TGG - chr6_4:29233095-29233114 None:intergenic 40.0%
TTCATTAAAAGGGGGACTCA+TGG + chr6_4:29233176-29233195 Msa0984480:CDS 40.0%
TACCACGATTCCTACCAATA+TGG + chr6_4:29233218-29233237 Msa0984480:CDS 40.0%
TTCCATATTGGTAGGAATCG+TGG - chr6_4:29233223-29233242 None:intergenic 40.0%
!!! ATTTTGGTTGGGTTCAGTTG+TGG - chr6_4:29233256-29233275 None:intergenic 40.0%
GAAATTCCTCCACTTCCATT+AGG + chr6_4:29233351-29233370 Msa0984480:CDS 40.0%
TTAGGATCACCTAATGGAAG+TGG - chr6_4:29233363-29233382 None:intergenic 40.0%
ACGACATTAGGATCACCTAA+TGG - chr6_4:29233369-29233388 None:intergenic 40.0%
ATTAGGTGATCCTAATGTCG+TGG + chr6_4:29233368-29233387 Msa0984480:CDS 40.0%
CTCTGTTACGGAAAAAACCT+TGG + chr6_4:29233428-29233447 Msa0984480:CDS 40.0%
TGACAAAGGAGGAAATTGAG+AGG + chr6_4:29233493-29233512 Msa0984480:CDS 40.0%
CGTACAAAGATGAAGACATG+AGG + chr6_4:29233535-29233554 Msa0984480:CDS 40.0%
AGACATGAGGTATAGGAAGA+AGG + chr6_4:29233548-29233567 Msa0984480:CDS 40.0%
TAAGTGGCTTGACGTTAATG+TGG + chr6_4:29233698-29233717 Msa0984480:CDS 40.0%
AAAGGATGAGAGTCATGATG+TGG + chr6_4:29233797-29233816 Msa0984480:CDS 40.0%
!! TGATGTGGAAGAAGGTACTA+TGG + chr6_4:29233812-29233831 Msa0984480:CDS 40.0%
!! TGGAAGAAGGTACTATGGTT+GGG + chr6_4:29233817-29233836 Msa0984480:CDS 40.0%
GTAGATGCAAAGAGGCTAAT+TGG + chr6_4:29232145-29232164 Msa0984480:CDS 40.0%
ATGCAAAGAGGCTAATTGGT+CGG + chr6_4:29232149-29232168 Msa0984480:CDS 40.0%
AGGTCGCCAATTACTTTGAA+TGG - chr6_4:29232217-29232236 None:intergenic 40.0%
CAATCTTGGGTTTGTCATTC+AGG - chr6_4:29232237-29232256 None:intergenic 40.0%
TGCTGAAGAAATCTCATCCA+TGG + chr6_4:29232291-29232310 Msa0984480:CDS 40.0%
GAGGTGAGTGTTTCCATTAA+TGG - chr6_4:29232617-29232636 None:intergenic 40.0%
TTAATGGAAACACTCACCTC+GGG + chr6_4:29232617-29232636 Msa0984480:CDS 40.0%
! CATGATGTTGTACTTGTTGG+CGG + chr6_4:29232946-29232965 Msa0984480:CDS 40.0%
!! CAAAAGCATCAATGCAGATG+AGG + chr6_4:29233047-29233066 Msa0984480:CDS 40.0%
! GTCCATGCTTTTATAGTGAG+TGG + chr6_4:29233090-29233109 Msa0984480:CDS 40.0%
CACCACTCACTATAAAAGCA+TGG - chr6_4:29233095-29233114 None:intergenic 40.0%
TTCATTAAAAGGGGGACTCA+TGG + chr6_4:29233176-29233195 Msa0984480:CDS 40.0%
TACCACGATTCCTACCAATA+TGG + chr6_4:29233218-29233237 Msa0984480:CDS 40.0%
TTCCATATTGGTAGGAATCG+TGG - chr6_4:29233223-29233242 None:intergenic 40.0%
!!! ATTTTGGTTGGGTTCAGTTG+TGG - chr6_4:29233256-29233275 None:intergenic 40.0%
GAAATTCCTCCACTTCCATT+AGG + chr6_4:29233351-29233370 Msa0984480:CDS 40.0%
TTAGGATCACCTAATGGAAG+TGG - chr6_4:29233363-29233382 None:intergenic 40.0%
ACGACATTAGGATCACCTAA+TGG - chr6_4:29233369-29233388 None:intergenic 40.0%
ATTAGGTGATCCTAATGTCG+TGG + chr6_4:29233368-29233387 Msa0984480:CDS 40.0%
CTCTGTTACGGAAAAAACCT+TGG + chr6_4:29233428-29233447 Msa0984480:CDS 40.0%
TGACAAAGGAGGAAATTGAG+AGG + chr6_4:29233493-29233512 Msa0984480:CDS 40.0%
CGTACAAAGATGAAGACATG+AGG + chr6_4:29233535-29233554 Msa0984480:CDS 40.0%
AGACATGAGGTATAGGAAGA+AGG + chr6_4:29233548-29233567 Msa0984480:CDS 40.0%
TAAGTGGCTTGACGTTAATG+TGG + chr6_4:29233698-29233717 Msa0984480:CDS 40.0%
AAAGGATGAGAGTCATGATG+TGG + chr6_4:29233797-29233816 Msa0984480:CDS 40.0%
!! TGATGTGGAAGAAGGTACTA+TGG + chr6_4:29233812-29233831 Msa0984480:CDS 40.0%
!! TGGAAGAAGGTACTATGGTT+GGG + chr6_4:29233817-29233836 Msa0984480:CDS 40.0%
! GCGCATTTTCACCAATACCA+TGG - chr6_4:29232311-29232330 None:intergenic 45.0%
TATGCAATTGCAGCTGCAGT+AGG - chr6_4:29232475-29232494 None:intergenic 45.0%
ACTGCAGCTGCAATTGCATA+TGG + chr6_4:29232475-29232494 Msa0984480:CDS 45.0%
! TGACTTAGGTGGTGGTACTT+TGG + chr6_4:29232546-29232565 Msa0984480:CDS 45.0%
TAATGGAAACACTCACCTCG+GGG + chr6_4:29232618-29232637 Msa0984480:CDS 45.0%
! TTCTTCTCGGTGATTAGTCG+TGG + chr6_4:29232829-29232848 Msa0984480:CDS 45.0%
! GAGTCTTTTTGACCAGTGCA+TGG + chr6_4:29232873-29232892 Msa0984480:CDS 45.0%
TTTCTACACTCTCCATGCAC+TGG - chr6_4:29232888-29232907 None:intergenic 45.0%
AAGCATCAATGCAGATGAGG+CGG + chr6_4:29233050-29233069 Msa0984480:CDS 45.0%
GAAGTCAATCCTTTGTCCCT+TGG + chr6_4:29233150-29233169 Msa0984480:CDS 45.0%
GTAGGAATCGTGGTATTCCT+AGG - chr6_4:29233213-29233232 None:intergenic 45.0%
AGGTGAGAGGCAAATAGCAA+AGG + chr6_4:29233299-29233318 Msa0984480:CDS 45.0%
! GCAAAGGACAACAACTTGCT+AGG + chr6_4:29233315-29233334 Msa0984480:CDS 45.0%
TGGAAGTTGACCACGACATT+AGG - chr6_4:29233381-29233400 None:intergenic 45.0%
TGACAAGGGAAGACTGACAA+AGG + chr6_4:29233479-29233498 Msa0984480:CDS 45.0%
GAGAGTCATGATGTGGAAGA+AGG + chr6_4:29233804-29233823 Msa0984480:CDS 45.0%
!! GTGGAAGAAGGTACTATGGT+TGG + chr6_4:29233816-29233835 Msa0984480:CDS 45.0%
! GCGCATTTTCACCAATACCA+TGG - chr6_4:29232311-29232330 None:intergenic 45.0%
TATGCAATTGCAGCTGCAGT+AGG - chr6_4:29232475-29232494 None:intergenic 45.0%
ACTGCAGCTGCAATTGCATA+TGG + chr6_4:29232475-29232494 Msa0984480:CDS 45.0%
! TGACTTAGGTGGTGGTACTT+TGG + chr6_4:29232546-29232565 Msa0984480:CDS 45.0%
TAATGGAAACACTCACCTCG+GGG + chr6_4:29232618-29232637 Msa0984480:CDS 45.0%
! TTCTTCTCGGTGATTAGTCG+TGG + chr6_4:29232829-29232848 Msa0984480:CDS 45.0%
! GAGTCTTTTTGACCAGTGCA+TGG + chr6_4:29232873-29232892 Msa0984480:CDS 45.0%
TTTCTACACTCTCCATGCAC+TGG - chr6_4:29232888-29232907 None:intergenic 45.0%
AAGCATCAATGCAGATGAGG+CGG + chr6_4:29233050-29233069 Msa0984480:CDS 45.0%
GAAGTCAATCCTTTGTCCCT+TGG + chr6_4:29233150-29233169 Msa0984480:CDS 45.0%
GTAGGAATCGTGGTATTCCT+AGG - chr6_4:29233213-29233232 None:intergenic 45.0%
AGGTGAGAGGCAAATAGCAA+AGG + chr6_4:29233299-29233318 Msa0984480:CDS 45.0%
! GCAAAGGACAACAACTTGCT+AGG + chr6_4:29233315-29233334 Msa0984480:CDS 45.0%
TGGAAGTTGACCACGACATT+AGG - chr6_4:29233381-29233400 None:intergenic 45.0%
TGACAAGGGAAGACTGACAA+AGG + chr6_4:29233479-29233498 Msa0984480:CDS 45.0%
GAGAGTCATGATGTGGAAGA+AGG + chr6_4:29233804-29233823 Msa0984480:CDS 45.0%
!! GTGGAAGAAGGTACTATGGT+TGG + chr6_4:29233816-29233835 Msa0984480:CDS 45.0%
GAGATAGCAGAAGCCTTCCT+TGG + chr6_4:29232331-29232350 Msa0984480:CDS 50.0%
AGCCTTCCTTGGATCAACAG+TGG + chr6_4:29232342-29232361 Msa0984480:CDS 50.0%
CTCCACTGTTGATCCAAGGA+AGG - chr6_4:29232347-29232366 None:intergenic 50.0%
CTTCCTTGGATCAACAGTGG+AGG + chr6_4:29232345-29232364 Msa0984480:CDS 50.0%
CATCCTCCACTGTTGATCCA+AGG - chr6_4:29232351-29232370 None:intergenic 50.0%
AATGGAAACACTCACCTCGG+GGG + chr6_4:29232619-29232638 Msa0984480:CDS 50.0%
! TATCAAAGTCTTGTCCCCCG+AGG - chr6_4:29232636-29232655 None:intergenic 50.0%
AGCAGTCTTCAGCCTCCTAA+GGG - chr6_4:29232731-29232750 None:intergenic 50.0%
AAGCAGTCTTCAGCCTCCTA+AGG - chr6_4:29232732-29232751 None:intergenic 50.0%
GGATCACCTAATGGAAGTGG+AGG - chr6_4:29233360-29233379 None:intergenic 50.0%
CAAGGGAAGACTGACAAAGG+AGG + chr6_4:29233482-29233501 Msa0984480:CDS 50.0%
TTGCAGCTGCATACACTAGC+TGG - chr6_4:29233899-29233918 None:intergenic 50.0%
CTAGTGTATGCAGCTGCAAC+AGG + chr6_4:29233900-29233919 Msa0984480:CDS 50.0%
GAGATAGCAGAAGCCTTCCT+TGG + chr6_4:29232331-29232350 Msa0984480:CDS 50.0%
AGCCTTCCTTGGATCAACAG+TGG + chr6_4:29232342-29232361 Msa0984480:CDS 50.0%
CTCCACTGTTGATCCAAGGA+AGG - chr6_4:29232347-29232366 None:intergenic 50.0%
CTTCCTTGGATCAACAGTGG+AGG + chr6_4:29232345-29232364 Msa0984480:CDS 50.0%
CATCCTCCACTGTTGATCCA+AGG - chr6_4:29232351-29232370 None:intergenic 50.0%
AATGGAAACACTCACCTCGG+GGG + chr6_4:29232619-29232638 Msa0984480:CDS 50.0%
! TATCAAAGTCTTGTCCCCCG+AGG - chr6_4:29232636-29232655 None:intergenic 50.0%
AGCAGTCTTCAGCCTCCTAA+GGG - chr6_4:29232731-29232750 None:intergenic 50.0%
AAGCAGTCTTCAGCCTCCTA+AGG - chr6_4:29232732-29232751 None:intergenic 50.0%
GGATCACCTAATGGAAGTGG+AGG - chr6_4:29233360-29233379 None:intergenic 50.0%
CAAGGGAAGACTGACAAAGG+AGG + chr6_4:29233482-29233501 Msa0984480:CDS 50.0%
TTGCAGCTGCATACACTAGC+TGG - chr6_4:29233899-29233918 None:intergenic 50.0%
CTAGTGTATGCAGCTGCAAC+AGG + chr6_4:29233900-29233919 Msa0984480:CDS 50.0%
ACGCCAGTCTACTCGAGATG+CGG + chr6_4:29232408-29232427 Msa0984480:CDS 55.0%
!! GAGATGCGGGTGCTATTGCT+GGG + chr6_4:29232422-29232441 Msa0984480:CDS 55.0%
ATGGAGCTCCAAGAGCCCTT+AGG + chr6_4:29232713-29232732 Msa0984480:CDS 55.0%
TTCAGCCTCCTAAGGGCTCT+TGG - chr6_4:29232724-29232743 None:intergenic 55.0%
! TACTTGTTGGCGGCTCTACC+AGG + chr6_4:29232956-29232975 Msa0984480:CDS 55.0%
GCAGATGAGGCGGTTGCATA+TGG + chr6_4:29233060-29233079 Msa0984480:CDS 55.0%
CTGCAACAGGTGACATCGCT+GGG + chr6_4:29233913-29233932 Msa0984480:CDS 55.0%
ACGCCAGTCTACTCGAGATG+CGG + chr6_4:29232408-29232427 Msa0984480:CDS 55.0%
!! GAGATGCGGGTGCTATTGCT+GGG + chr6_4:29232422-29232441 Msa0984480:CDS 55.0%
ATGGAGCTCCAAGAGCCCTT+AGG + chr6_4:29232713-29232732 Msa0984480:CDS 55.0%
TTCAGCCTCCTAAGGGCTCT+TGG - chr6_4:29232724-29232743 None:intergenic 55.0%
! TACTTGTTGGCGGCTCTACC+AGG + chr6_4:29232956-29232975 Msa0984480:CDS 55.0%
GCAGATGAGGCGGTTGCATA+TGG + chr6_4:29233060-29233079 Msa0984480:CDS 55.0%
CTGCAACAGGTGACATCGCT+GGG + chr6_4:29233913-29233932 Msa0984480:CDS 55.0%
CGCCAGTCTACTCGAGATGC+GGG + chr6_4:29232409-29232428 Msa0984480:CDS 60.0%
CACCCGCATCTCGAGTAGAC+TGG - chr6_4:29232414-29232433 None:intergenic 60.0%
!! CGAGATGCGGGTGCTATTGC+TGG + chr6_4:29232421-29232440 Msa0984480:CDS 60.0%
GAGCTCCAAGAGCCCTTAGG+AGG + chr6_4:29232716-29232735 Msa0984480:CDS 60.0%
GCTGCAACAGGTGACATCGC+TGG + chr6_4:29233912-29233931 Msa0984480:CDS 60.0%
CGCCAGTCTACTCGAGATGC+GGG + chr6_4:29232409-29232428 Msa0984480:CDS 60.0%
CACCCGCATCTCGAGTAGAC+TGG - chr6_4:29232414-29232433 None:intergenic 60.0%
!! CGAGATGCGGGTGCTATTGC+TGG + chr6_4:29232421-29232440 Msa0984480:CDS 60.0%
GAGCTCCAAGAGCCCTTAGG+AGG + chr6_4:29232716-29232735 Msa0984480:CDS 60.0%
GCTGCAACAGGTGACATCGC+TGG + chr6_4:29233912-29233931 Msa0984480:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 29232103 29233959 29232103 ID=Msa0984480;Name=Msa0984480
chr6_4 mRNA 29232103 29233959 29232103 ID=Msa0984480-mRNA-1;Parent=Msa0984480;Name=Msa0984480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|618
chr6_4 exon 29232103 29233959 29232103 ID=Msa0984480-mRNA-1:exon:8029;Parent=Msa0984480-mRNA-1
chr6_4 CDS 29232103 29233959 29232103 ID=Msa0984480-mRNA-1:cds;Parent=Msa0984480-mRNA-1
Gene Sequence

>Msa0984480

ATGCAATTTTTTTTCATAGTGTACACAACTCTCTTTTGTTTTGTAGATGCAAAGAGGCTAATTGGTCGGAAATTTAGTGATCCCATAGTACAAAGTGATGTGAAGTTGTGGCCATTCAAAGTAATTGGCGACCTGAATGACAAACCCAAGATTGTTGTTAACTATAAAGACGAGGAAAAGCATTTTACTGCTGAAGAAATCTCATCCATGGTATTGGTGAAAATGCGCGAGATAGCAGAAGCCTTCCTTGGATCAACAGTGGAGGATGTCGTTATAACTGTGCCTGCATACTTTAATGACTCACAACGCCAGTCTACTCGAGATGCGGGTGCTATTGCTGGGCTCAATGTTATGCGAATACTCAATGAGCCTACTGCAGCTGCAATTGCATATGGCCTTGACTTGAAACCATTTAATCATGGATGTAGAAATGTTTTCATTTTTGACTTAGGTGGTGGTACTTTGGACGTGTCTATTCTCACATTTGAGAATGGTGATATCAATGTTAAGGCCATTAATGGAAACACTCACCTCGGGGGACAAGACTTTGATAATGCAATGGTGAACCATTTTGTGAAAGAGTTCTTGAGAAAGCATAAACTGGACATTAATGGAGCTCCAAGAGCCCTTAGGAGGCTGAAGACTGCTTGCGAGAGAGCAAAATGTACACTTTCATCCAATAATGAGACTACCATTGAGATAGATTGTTTATATCAAGGTGAAGATTTCTTCTCGGTGATTAGTCGTGGAATTTTCGACAATCTCAGCTTGAGTCTTTTTGACCAGTGCATGGAGAGTGTAGAAAAGTGTATAGCAGATAGTGGGATAAACAAGAGTAACATTCATGATGTTGTACTTGTTGGCGGCTCTACCAGGATTGTAAAAGTGCAACAACTTTTGATTGATTTCTTTGGAATTAAAAAGGGTAGTGGGACGGAGTTATGCAAAAGCATCAATGCAGATGAGGCGGTTGCATATGGCGCTGCTGTCCATGCTTTTATAGTGAGTGGTGAGCTTTGTGAAAAGTTTCAAGATTTGAAATTGAGGGAAGTCAATCCTTTGTCCCTTGGAATTTCATTAAAAGGGGGACTCATGGACATAATAATTCCTAGGAATACCACGATTCCTACCAATATGGAAGATTATATCACCACAACTGAACCCAACCAAAATTCTATGACCATTAATGTTTATGAAGGTGAGAGGCAAATAGCAAAGGACAACAACTTGCTAGGAACTTTTGTGTTTGAAATTCCTCCACTTCCATTAGGTGATCCTAATGTCGTGGTCAACTTCCAAATTAATGATGATGGCATCTTAAACGTCTCTGTTACGGAAAAAACCTTGGGAATTGATAAAAGGTTTAAAATAGTAAATGACAAGGGAAGACTGACAAAGGAGGAAATTGAGAGGATGATCAGAGAAGCTGAGACGTACAAAGATGAAGACATGAGGTATAGGAAGAAGGTTGAAGCGAGAAATGCACTAGAGAAGTACGCATACAATATGAGGGATTTCATAAATGATCCGGATATTAGCTCAAAGCTTTTGTCAAAAGAAAAGGAAAAGATCAATAACGCAATTGATTTGGTCTTTAAGTGGCTTGACGTTAATGTGGTTGCAGAACAACAAGATGTTGAATGTTACAGGAGCATTCTTTCAAGTGTGTTTGACCCAGTTATTATAAAGATGATAAAGGATGAGAGTCATGATGTGGAAGAAGGTACTATGGTTGGGCATCCAGTGAAGAAAAAAAAGAATCGTTGGTTACCAGTATTAGCAAAATATAGTTTCCAGCTAGTGTATGCAGCTGCAACAGGTGACATCGCTGGGATAATATGTTCCATATTTGGTTAG
Protein sequence

>Msa0984480

MQFFFIVYTTLFCFVDAKRLIGRKFSDPIVQSDVKLWPFKVIGDLNDKPKIVVNYKDEEKHFTAEEISSMVLVKMREIAEAFLGSTVEDVVITVPAYFNDSQRQSTRDAGAIAGLNVMRILNEPTAAAIAYGLDLKPFNHGCRNVFIFDLGGGTLDVSILTFENGDINVKAINGNTHLGGQDFDNAMVNHFVKEFLRKHKLDINGAPRALRRLKTACERAKCTLSSNNETTIEIDCLYQGEDFFSVISRGIFDNLSLSLFDQCMESVEKCIADSGINKSNIHDVVLVGGSTRIVKVQQLLIDFFGIKKGSGTELCKSINADEAVAYGAAVHAFIVSGELCEKFQDLKLREVNPLSLGISLKGGLMDIIIPRNTTIPTNMEDYITTTEPNQNSMTINVYEGERQIAKDNNLLGTFVFEIPPLPLGDPNVVVNFQINDDGILNVSVTEKTLGIDKRFKIVNDKGRLTKEEIERMIREAETYKDEDMRYRKKVEARNALEKYAYNMRDFINDPDISSKLLSKEKEKINNAIDLVFKWLDVNVVAEQQDVECYRSILSSVFDPVIIKMIKDESHDVEEGTMVGHPVKKKKNRWLPVLAKYSFQLVYAAATGDIAGIICSIFG*