Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616960 | KEH26040.1 | 96.833 | 221 | 7 | 0 | 1 | 221 | 367 | 587 | 1.28e-153 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616960 | sp|Q8H0Z6|IP5P3_ARATH | 71.689 | 219 | 61 | 1 | 1 | 218 | 446 | 664 | 3.80e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613460 | Msa0616960 | 0.805134 | 1.545392e-49 | -8.615850e-47 |
| Msa0616960 | Msa0950520 | 0.816531 | 5.271376e-52 | -8.615850e-47 |
| Msa0616960 | Msa1118760 | 0.802108 | 6.561295e-49 | -8.615850e-47 |
| Msa0124550 | Msa0616960 | 0.802624 | 5.136092e-49 | -8.615850e-47 |
| Msa0140510 | Msa0616960 | -0.801992 | 6.931254e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616960 | MtrunA17_Chr6g0466801 | 96.833 | 221 | 7 | 0 | 1 | 221 | 407 | 627 | 1.74e-157 | 449 |
| Msa0616960 | MtrunA17_Chr1g0201271 | 75.000 | 220 | 55 | 0 | 1 | 220 | 409 | 628 | 1.51e-123 | 363 |
| Msa0616960 | MtrunA17_Chr1g0205121 | 56.951 | 223 | 83 | 6 | 1 | 214 | 353 | 571 | 8.62e-81 | 252 |
| Msa0616960 | MtrunA17_Chr5g0400311 | 56.459 | 209 | 88 | 2 | 1 | 206 | 405 | 613 | 1.81e-80 | 252 |
| Msa0616960 | MtrunA17_Chr1g0185281 | 54.955 | 222 | 90 | 4 | 1 | 214 | 326 | 545 | 3.32e-80 | 249 |
| Msa0616960 | MtrunA17_Chr5g0394901 | 55.909 | 220 | 90 | 4 | 1 | 214 | 392 | 610 | 3.57e-80 | 251 |
| Msa0616960 | MtrunA17_Chr7g0260081 | 54.505 | 222 | 91 | 4 | 1 | 214 | 326 | 545 | 8.65e-80 | 248 |
| Msa0616960 | MtrunA17_Chr4g0054951 | 53.738 | 214 | 96 | 2 | 1 | 211 | 348 | 561 | 1.13e-79 | 248 |
| Msa0616960 | MtrunA17_Chr4g0054941 | 52.607 | 211 | 97 | 2 | 1 | 208 | 348 | 558 | 1.37e-77 | 243 |
| Msa0616960 | MtrunA17_Chr8g0355021 | 56.808 | 213 | 81 | 4 | 1 | 204 | 265 | 475 | 4.44e-76 | 237 |
| Msa0616960 | MtrunA17_Chr6g0479511 | 48.718 | 195 | 96 | 2 | 1 | 191 | 190 | 384 | 3.57e-69 | 216 |
| Msa0616960 | MtrunA17_Chr8g0382571 | 50.224 | 223 | 100 | 5 | 1 | 214 | 251 | 471 | 1.43e-67 | 215 |
| Msa0616960 | MtrunA17_Chr1g0165011 | 50.990 | 202 | 93 | 2 | 1 | 196 | 215 | 416 | 3.23e-67 | 213 |
| Msa0616960 | MtrunA17_Chr8g0375751 | 50.239 | 209 | 99 | 2 | 1 | 204 | 184 | 392 | 6.91e-66 | 209 |
| Msa0616960 | MtrunA17_Chr7g0263111 | 50.962 | 208 | 90 | 5 | 1 | 204 | 209 | 408 | 1.43e-64 | 206 |
| Msa0616960 | MtrunA17_Chr6g0452181 | 50.980 | 204 | 92 | 4 | 1 | 196 | 203 | 406 | 2.85e-58 | 190 |
| Msa0616960 | MtrunA17_Chr1g0189231 | 30.531 | 226 | 113 | 8 | 4 | 189 | 649 | 870 | 1.64e-26 | 107 |
| Msa0616960 | MtrunA17_Chr6g0488541 | 32.275 | 189 | 108 | 7 | 47 | 218 | 785 | 970 | 2.63e-19 | 86.3 |
| Msa0616960 | MtrunA17_Chr6g0474691 | 81.818 | 44 | 8 | 0 | 70 | 113 | 22 | 65 | 1.27e-16 | 72.0 |
| Msa0616960 | MtrunA17_Chr1g0154491 | 33.500 | 200 | 113 | 9 | 2 | 191 | 146 | 335 | 1.97e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616960 | AT1G71710.2 | 71.689 | 219 | 61 | 1 | 1 | 218 | 437 | 655 | 3.14e-109 | 327 |
| Msa0616960 | AT1G71710.1 | 71.689 | 219 | 61 | 1 | 1 | 218 | 446 | 664 | 3.87e-109 | 327 |
| Msa0616960 | AT1G34120.5 | 65.278 | 216 | 72 | 2 | 1 | 213 | 220 | 435 | 1.42e-99 | 296 |
| Msa0616960 | AT1G34120.1 | 65.278 | 216 | 72 | 2 | 1 | 213 | 371 | 586 | 1.71e-97 | 295 |
| Msa0616960 | AT1G34120.2 | 65.278 | 216 | 72 | 2 | 1 | 213 | 375 | 590 | 1.79e-97 | 295 |
| Msa0616960 | AT1G34120.3 | 64.815 | 216 | 72 | 3 | 1 | 213 | 375 | 589 | 6.65e-95 | 289 |
| Msa0616960 | AT3G63240.2 | 55.455 | 220 | 92 | 3 | 1 | 214 | 316 | 535 | 1.66e-80 | 250 |
| Msa0616960 | AT3G63240.1 | 55.455 | 220 | 92 | 3 | 1 | 214 | 316 | 535 | 1.66e-80 | 250 |
| Msa0616960 | AT4G18010.1 | 55.024 | 209 | 91 | 2 | 1 | 206 | 427 | 635 | 3.26e-79 | 249 |
| Msa0616960 | AT1G05470.2 | 55.000 | 220 | 92 | 4 | 1 | 214 | 387 | 605 | 2.79e-78 | 246 |
| Msa0616960 | AT1G05470.1 | 55.000 | 220 | 92 | 4 | 1 | 214 | 387 | 605 | 2.79e-78 | 246 |
| Msa0616960 | AT2G32010.2 | 55.000 | 220 | 92 | 4 | 1 | 214 | 364 | 582 | 3.25e-78 | 246 |
| Msa0616960 | AT2G32010.1 | 55.000 | 220 | 92 | 4 | 1 | 214 | 364 | 582 | 3.25e-78 | 246 |
| Msa0616960 | AT2G32010.4 | 55.000 | 220 | 92 | 4 | 1 | 214 | 364 | 582 | 3.25e-78 | 246 |
| Msa0616960 | AT2G32010.3 | 55.000 | 220 | 92 | 4 | 1 | 214 | 364 | 582 | 3.25e-78 | 246 |
| Msa0616960 | AT5G04980.4 | 54.545 | 198 | 83 | 3 | 1 | 191 | 195 | 392 | 2.33e-69 | 218 |
| Msa0616960 | AT5G04980.1 | 54.545 | 198 | 83 | 3 | 1 | 191 | 230 | 427 | 9.26e-69 | 217 |
| Msa0616960 | AT5G04980.3 | 54.545 | 198 | 83 | 3 | 1 | 191 | 230 | 427 | 9.26e-69 | 217 |
| Msa0616960 | AT5G65090.2 | 53.202 | 203 | 87 | 4 | 1 | 196 | 237 | 438 | 1.16e-68 | 218 |
| Msa0616960 | AT5G04980.2 | 54.545 | 198 | 83 | 3 | 1 | 191 | 259 | 456 | 1.26e-68 | 218 |
| Msa0616960 | AT5G65090.3 | 53.202 | 203 | 87 | 4 | 1 | 196 | 300 | 501 | 4.87e-68 | 218 |
| Msa0616960 | AT5G65090.1 | 53.202 | 203 | 87 | 4 | 1 | 196 | 300 | 501 | 4.87e-68 | 218 |
| Msa0616960 | AT2G01900.1 | 50.239 | 209 | 100 | 2 | 1 | 205 | 190 | 398 | 3.15e-67 | 213 |
| Msa0616960 | AT2G01900.3 | 50.239 | 209 | 100 | 2 | 1 | 205 | 198 | 406 | 4.07e-67 | 213 |
| Msa0616960 | AT2G37440.2 | 54.404 | 193 | 84 | 3 | 1 | 190 | 151 | 342 | 7.90e-67 | 211 |
| Msa0616960 | AT2G37440.1 | 54.404 | 193 | 84 | 3 | 1 | 190 | 232 | 423 | 4.22e-66 | 211 |
| Msa0616960 | AT2G37440.3 | 54.404 | 193 | 84 | 3 | 1 | 190 | 232 | 423 | 4.22e-66 | 211 |
| Msa0616960 | AT2G01900.2 | 48.558 | 208 | 96 | 2 | 1 | 205 | 190 | 389 | 5.15e-64 | 204 |
| Msa0616960 | AT4G18010.2 | 54.194 | 155 | 68 | 2 | 1 | 152 | 427 | 581 | 2.27e-55 | 186 |
| Msa0616960 | AT1G34120.4 | 67.619 | 105 | 32 | 1 | 1 | 103 | 371 | 475 | 1.06e-41 | 147 |
| Msa0616960 | AT1G65580.2 | 30.435 | 230 | 113 | 8 | 4 | 189 | 394 | 620 | 6.77e-25 | 102 |
| Msa0616960 | AT1G65580.1 | 30.435 | 230 | 113 | 8 | 4 | 189 | 660 | 886 | 1.11e-24 | 102 |
| Msa0616960 | AT2G43900.2 | 29.565 | 230 | 117 | 6 | 4 | 190 | 699 | 926 | 3.44e-24 | 100 |
| Msa0616960 | AT2G43900.1 | 29.565 | 230 | 117 | 6 | 4 | 190 | 699 | 926 | 3.95e-24 | 100 |
| Msa0616960 | AT2G31830.2 | 31.604 | 212 | 109 | 7 | 4 | 187 | 702 | 905 | 8.24e-23 | 96.7 |
| Msa0616960 | AT2G31830.1 | 31.604 | 212 | 109 | 7 | 4 | 187 | 702 | 905 | 9.21e-23 | 96.7 |
| Msa0616960 | AT1G47510.4 | 35.602 | 191 | 100 | 8 | 2 | 183 | 87 | 263 | 1.02e-22 | 93.2 |
| Msa0616960 | AT1G05630.3 | 32.967 | 182 | 92 | 5 | 4 | 157 | 693 | 872 | 1.32e-22 | 95.9 |
| Msa0616960 | AT2G31830.3 | 31.604 | 212 | 109 | 7 | 4 | 187 | 702 | 905 | 1.33e-22 | 95.9 |
| Msa0616960 | AT1G05630.2 | 32.967 | 182 | 92 | 5 | 4 | 157 | 693 | 872 | 1.51e-22 | 95.9 |
| Msa0616960 | AT1G47510.1 | 35.602 | 191 | 100 | 8 | 2 | 183 | 149 | 325 | 3.63e-22 | 92.8 |
| Msa0616960 | AT1G05630.1 | 43.956 | 91 | 49 | 2 | 69 | 157 | 816 | 906 | 3.11e-17 | 80.5 |
| Msa0616960 | AT1G47510.2 | 41.880 | 117 | 57 | 5 | 75 | 183 | 149 | 262 | 2.46e-15 | 73.2 |
Find 49 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATTCACCTTCTATTAT+TGG | 0.150910 | 4_2:-67222735 | Msa0616960:CDS |
| GCTCCTTGATATTGATATTC+TGG | 0.214730 | 4_2:+67220427 | None:intergenic |
| TTATTTGCAGAAGAATAATT+TGG | 0.290513 | 4_2:-67222594 | Msa0616960:intron |
| TCTCTGCATTAGTGAATGTT+AGG | 0.302743 | 4_2:+67220942 | None:intergenic |
| CCATTAAAAGTTTAATAAGT+TGG | 0.348825 | 4_2:-67220904 | Msa0616960:CDS |
| AAGAATCTATATTTAGTTGT+TGG | 0.349725 | 4_2:+67220368 | None:intergenic |
| TGTGATCGTGTTCTTTCATA+TGG | 0.402435 | 4_2:-67221085 | Msa0616960:CDS |
| AACTATTTCCACTTTAAAAG+TGG | 0.415417 | 4_2:+67220306 | None:intergenic |
| TCTATTATTGGACTTCCTAA+AGG | 0.428272 | 4_2:-67222723 | Msa0616960:CDS |
| TCGTGATCGAGGATTCCTTT+AGG | 0.429042 | 4_2:+67222708 | None:intergenic |
| TTTAGGTTCAAATGTTTGAA+TGG | 0.429400 | 4_2:-67220258 | Msa0616960:three_prime_UTR |
| ACAAGTACACACATATATAT+AGG | 0.431036 | 4_2:+67220229 | None:intergenic |
| ACGATATATGTCGCAGTCAC+GGG | 0.442858 | 4_2:+67221004 | None:intergenic |
| TGGTGTACGCTTTGAAGCCT+TGG | 0.447683 | 4_2:+67221548 | None:intergenic |
| TTAGGAAGTCCAATAATAGA+AGG | 0.448076 | 4_2:+67222726 | None:intergenic |
| TGCAGAAGAATAATTTGGTT+AGG | 0.452884 | 4_2:-67222589 | Msa0616960:intron |
| ATCTCATATTTATACGTTGG+TGG | 0.461580 | 4_2:+67221600 | None:intergenic |
| GTTGCTTGTCACTTCGACTC+CGG | 0.467104 | 4_2:+67220178 | None:intergenic |
| GGTGTACGCTTTGAAGCCTT+GGG | 0.469119 | 4_2:+67221549 | None:intergenic |
| TGTGTGTACTTGTGTGATTA+AGG | 0.472951 | 4_2:-67220219 | Msa0616960:three_prime_UTR |
| ATTTGCACGCATCTTACCTC+TGG | 0.473781 | 4_2:-67222822 | Msa0616960:CDS |
| GCATCTTACCTCTGGTGAAA+AGG | 0.476309 | 4_2:-67222814 | Msa0616960:CDS |
| AACGATATATGTCGCAGTCA+CGG | 0.481157 | 4_2:+67221003 | None:intergenic |
| ACGGACCGAGCTCAAAATAT+CGG | 0.491707 | 4_2:-67221035 | Msa0616960:CDS |
| CTCTGCATTAGTGAATGTTA+GGG | 0.506426 | 4_2:+67220943 | None:intergenic |
| CCGTATCAACTTATCATATG+TGG | 0.507670 | 4_2:-67222554 | Msa0616960:CDS |
| TTTCCAGAATATCAATATCA+AGG | 0.513090 | 4_2:-67220430 | Msa0616960:three_prime_UTR |
| AAAATGGTGCATTTGGAGGA+TGG | 0.518221 | 4_2:-67221644 | Msa0616960:CDS |
| TCTCATATTTATACGTTGGT+GGG | 0.519095 | 4_2:+67221601 | None:intergenic |
| GCATTTGGAGGATGGTCAGA+AGG | 0.519860 | 4_2:-67221636 | Msa0616960:CDS |
| AGGGCTCGCTGTAGCTTCCT+AGG | 0.521735 | 4_2:+67220962 | None:intergenic |
| TTAATCTCATATTTATACGT+TGG | 0.545859 | 4_2:+67221597 | None:intergenic |
| TCGTGTTCTTTCATATGGCA+AGG | 0.548312 | 4_2:-67221080 | Msa0616960:CDS |
| GACATATATCGTTGAAGTTG+AGG | 0.554292 | 4_2:-67220993 | Msa0616960:CDS |
| ACGCTTTGAAGCCTTGGGAT+CGG | 0.561957 | 4_2:+67221554 | None:intergenic |
| CCACATATGATAAGTTGATA+CGG | 0.565034 | 4_2:+67222554 | None:intergenic |
| CGTGTTCTTTCATATGGCAA+GGG | 0.574490 | 4_2:-67221079 | Msa0616960:CDS |
| CATTTGGAGGATGGTCAGAA+GGG | 0.576338 | 4_2:-67221635 | Msa0616960:CDS |
| AAGTTGAGGCATTCTCACCT+AGG | 0.580149 | 4_2:-67220979 | Msa0616960:CDS |
| CGGGCACTCACTCGTGATCG+AGG | 0.582396 | 4_2:+67222697 | None:intergenic |
| TTATGTGTAGGGATTTGTAA+AGG | 0.589448 | 4_2:-67220463 | Msa0616960:intron |
| CTTACCTCTGGTGAAAAGGA+AGG | 0.597530 | 4_2:-67222810 | Msa0616960:CDS |
| ATTAATTCAGACAAGTACTA+CGG | 0.610965 | 4_2:-67221579 | Msa0616960:CDS |
| TATACAAAAGCATACCATGC+TGG | 0.624426 | 4_2:+67221528 | None:intergenic |
| GTACTACGGAGCCGATCCCA+AGG | 0.637666 | 4_2:-67221565 | Msa0616960:CDS |
| CTTCAAAGCGTACACCAGCA+TGG | 0.647826 | 4_2:-67221542 | Msa0616960:intron |
| TGAGATTACTGAGTTACAGA+CGG | 0.650084 | 4_2:-67221054 | Msa0616960:CDS |
| GTCGGCATTATGGGCTACAT+CGG | 0.664638 | 4_2:-67223102 | Msa0616960:exon |
| ATTTGGAGGATGGTCAGAAG+GGG | 0.681947 | 4_2:-67221634 | Msa0616960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATAAAAATAAAAGCAT+AGG | + | chr4_2:67221821-67221840 | None:intergenic | 10.0% |
| !!! | TTTAATCAAAAGTTTTTAAG+TGG | - | chr4_2:67220344-67220363 | Msa0616960:three_prime_UTR | 15.0% |
| !!! | TTAATCAAAAGTTTTTAAGT+GGG | - | chr4_2:67220345-67220364 | Msa0616960:three_prime_UTR | 15.0% |
| !!! | TGCTTTTATTTTTATTTATC+TGG | - | chr4_2:67221822-67221841 | Msa0616960:intron | 15.0% |
| !!! | TAATCAAAAGTTTTTAAGTG+GGG | - | chr4_2:67220346-67220365 | Msa0616960:three_prime_UTR | 20.0% |
| !! | AACAAAAGAATTGAACTATA+CGG | + | chr4_2:67220646-67220665 | None:intergenic | 20.0% |
| !! | TTATTTGCAGAAGAATAATT+TGG | - | chr4_2:67220699-67220718 | Msa0616960:intron | 20.0% |
| !! | TGAATAAATTAGGATAAGTT+AGG | - | chr4_2:67221184-67221203 | Msa0616960:intron | 20.0% |
| !!! | AATGTGTTGATTCATATTTA+TGG | + | chr4_2:67221317-67221336 | None:intergenic | 20.0% |
| !! | AATGTAATTTAGAAAACCAT+TGG | - | chr4_2:67221415-67221434 | Msa0616960:intron | 20.0% |
| !! | AAACAAATCTAATATTGACA+TGG | + | chr4_2:67221450-67221469 | None:intergenic | 20.0% |
| !!! | TATTAGATTTGTTTATCGTA+TGG | - | chr4_2:67221456-67221475 | Msa0616960:intron | 20.0% |
| !! | TTGAATAACTACATGTATTA+TGG | + | chr4_2:67221514-67221533 | None:intergenic | 20.0% |
| !!! | TAAAATGAACTCAAGTTTTA+AGG | - | chr4_2:67221576-67221595 | Msa0616960:CDS | 20.0% |
| !! | TTAATCTCATATTTATACGT+TGG | + | chr4_2:67221699-67221718 | None:intergenic | 20.0% |
| !!! | AACTTTTAAAACATGAAATG+TGG | + | chr4_2:67221859-67221878 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTAAAAGTTCT+CGG | - | chr4_2:67221861-67221880 | Msa0616960:intron | 20.0% |
| !! | AGAAATTATTAGATTTGTAC+AGG | + | chr4_2:67221931-67221950 | None:intergenic | 20.0% |
| !!! | GAATATCTTAATTACCATTT+TGG | - | chr4_2:67222095-67222114 | Msa0616960:intron | 20.0% |
| !!! | ACATTTTCTATAATCCAAAA+TGG | + | chr4_2:67222112-67222131 | None:intergenic | 20.0% |
| !!! | CCAACTTATTAAACTTTTAA+TGG | + | chr4_2:67222392-67222411 | None:intergenic | 20.0% |
| !! | CCATTAAAAGTTTAATAAGT+TGG | - | chr4_2:67222389-67222408 | Msa0616960:intron | 20.0% |
| !! | AAGAATCTATATTTAGTTGT+TGG | + | chr4_2:67222928-67222947 | None:intergenic | 20.0% |
| !!! | TTTATTTTCCACTTTTAAAG+TGG | - | chr4_2:67222979-67222998 | Msa0616960:intron | 20.0% |
| !!! | CATTTTTTTGTCTTTTCAAT+AGG | - | chr4_2:67223011-67223030 | Msa0616960:intron | 20.0% |
| ! | GATGGAAAAATAAATATCGA+GGG | + | chr4_2:67220256-67220275 | None:intergenic | 25.0% |
| ! | AGATGGAAAAATAAATATCG+AGG | + | chr4_2:67220257-67220276 | None:intergenic | 25.0% |
| !!! | AATCAAAAGTTTTTAAGTGG+GGG | - | chr4_2:67220347-67220366 | Msa0616960:three_prime_UTR | 25.0% |
| ! | ATACCAATATTAACATTGCA+CGG | - | chr4_2:67220372-67220391 | Msa0616960:three_prime_UTR | 25.0% |
| !!! | AACAACTTTTTCAATTTTCC+AGG | - | chr4_2:67220401-67220420 | Msa0616960:three_prime_UTR | 25.0% |
| !!! | ACAACTTTTTCAATTTTCCA+GGG | - | chr4_2:67220402-67220421 | Msa0616960:three_prime_UTR | 25.0% |
| ! | TTTCATTCACCTTCTATTAT+TGG | - | chr4_2:67220558-67220577 | Msa0616960:intron | 25.0% |
| ! | AAACAAAGAACAGATATTTC+GGG | + | chr4_2:67220618-67220637 | None:intergenic | 25.0% |
| ! | GAAACAAAGAACAGATATTT+CGG | + | chr4_2:67220619-67220638 | None:intergenic | 25.0% |
| ! | AAAATTGCTTGAAAAAGATC+AGG | - | chr4_2:67220796-67220815 | Msa0616960:intron | 25.0% |
| !!! | TAATGGCTTGTTAAATTAAG+AGG | + | chr4_2:67220994-67221013 | None:intergenic | 25.0% |
| !!! | CACGTAATTAGAAGTATTAA+TGG | + | chr4_2:67221011-67221030 | None:intergenic | 25.0% |
| !!! | TTGGTTTGAGCATATAATTT+TGG | - | chr4_2:67221082-67221101 | Msa0616960:CDS | 25.0% |
| ! | ATAAATTAGGATAAGTTAGG+TGG | - | chr4_2:67221187-67221206 | Msa0616960:intron | 25.0% |
| !! | TTGAGTTCATTTTATGAAGT+TGG | + | chr4_2:67221570-67221589 | None:intergenic | 25.0% |
| ! | GAATTAAAAAATGGTGCATT+TGG | - | chr4_2:67221642-67221661 | Msa0616960:CDS | 25.0% |
| ! | ATTAATTCAGACAAGTACTA+CGG | - | chr4_2:67221714-67221733 | Msa0616960:intron | 25.0% |
| !! | TTGATGAAAATTTTCGTTTC+AGG | - | chr4_2:67222185-67222204 | Msa0616960:intron | 25.0% |
| !!! | TATGGAAACTTTGGTTTTAA+CGG | + | chr4_2:67222583-67222602 | None:intergenic | 25.0% |
| ! | TCAATTATTTCAAGACAAGA+CGG | + | chr4_2:67222638-67222657 | None:intergenic | 25.0% |
| ! | TTTCCAGAATATCAATATCA+AGG | - | chr4_2:67222863-67222882 | Msa0616960:CDS | 25.0% |
| !! | AACTATTTCCACTTTAAAAG+TGG | + | chr4_2:67222990-67223009 | None:intergenic | 25.0% |
| !! | TTGTCTTTTCAATAGGATTT+AGG | - | chr4_2:67223018-67223037 | Msa0616960:intron | 25.0% |
| !! | TTTAGGTTCAAATGTTTGAA+TGG | - | chr4_2:67223035-67223054 | Msa0616960:intron | 25.0% |
| ! | ACAAGTACACACATATATAT+AGG | + | chr4_2:67223067-67223086 | None:intergenic | 25.0% |
| AAAGTAATGGTCTAAAGAGA+GGG | + | chr4_2:67220231-67220250 | None:intergenic | 30.0% | |
| AAAAGTAATGGTCTAAAGAG+AGG | + | chr4_2:67220232-67220251 | None:intergenic | 30.0% | |
| AATATCGAGGGAAAAAGTAA+TGG | + | chr4_2:67220244-67220263 | None:intergenic | 30.0% | |
| TACCAATATTAACATTGCAC+GGG | - | chr4_2:67220373-67220392 | Msa0616960:three_prime_UTR | 30.0% | |
| TTAGGAAGTCCAATAATAGA+AGG | + | chr4_2:67220570-67220589 | None:intergenic | 30.0% | |
| TCTATTATTGGACTTCCTAA+AGG | - | chr4_2:67220570-67220589 | Msa0616960:intron | 30.0% | |
| TGCAGAAGAATAATTTGGTT+AGG | - | chr4_2:67220704-67220723 | Msa0616960:intron | 30.0% | |
| !! | CCACATATGATAAGTTGATA+CGG | + | chr4_2:67220742-67220761 | None:intergenic | 30.0% |
| ! | ATGTTTGAAGAAGCTTTTAC+TGG | + | chr4_2:67220951-67220970 | None:intergenic | 30.0% |
| TATTTCTTATCGAGCAGATT+TGG | - | chr4_2:67221063-67221082 | Msa0616960:CDS | 30.0% | |
| AATGCATTTCTTAGACTCAT+TGG | - | chr4_2:67221105-67221124 | Msa0616960:intron | 30.0% | |
| !! | CTCAGATTGTTATTTCAATC+TGG | + | chr4_2:67221153-67221172 | None:intergenic | 30.0% |
| ! | TTGAAATAACAATCTGAGAC+AGG | - | chr4_2:67221155-67221174 | Msa0616960:intron | 30.0% |
| CAGGTCAACATGAATAAATT+AGG | - | chr4_2:67221174-67221193 | Msa0616960:intron | 30.0% | |
| TTGAAAATAGTTCCGAGTTA+AGG | - | chr4_2:67221254-67221273 | Msa0616960:intron | 30.0% | |
| TGAAACAAAGTTCCTTAACT+CGG | + | chr4_2:67221269-67221288 | None:intergenic | 30.0% | |
| CTGATGCGAGAATTAAAAAA+TGG | - | chr4_2:67221633-67221652 | Msa0616960:CDS | 30.0% | |
| TTAAAAAATGGTGCATTTGG+AGG | - | chr4_2:67221645-67221664 | Msa0616960:CDS | 30.0% | |
| TCTCATATTTATACGTTGGT+GGG | + | chr4_2:67221695-67221714 | None:intergenic | 30.0% | |
| ATCTCATATTTATACGTTGG+TGG | + | chr4_2:67221696-67221715 | None:intergenic | 30.0% | |
| TATCTGAGTTAATCATCATG+TGG | - | chr4_2:67221887-67221906 | Msa0616960:intron | 30.0% | |
| TGCAATTCTATTCCATGATT+AGG | - | chr4_2:67222053-67222072 | Msa0616960:intron | 30.0% | |
| ! | ATTTTGCATCAACCTAATCA+TGG | + | chr4_2:67222068-67222087 | None:intergenic | 30.0% |
| !!! | CACATGTTTTGATATGAGTT+GGG | - | chr4_2:67222475-67222494 | Msa0616960:intron | 30.0% |
| GTTAAAACCAAAGTTTCCAT+AGG | - | chr4_2:67222582-67222601 | Msa0616960:CDS | 30.0% | |
| TTTACAAATCCCTACACATA+AGG | + | chr4_2:67222831-67222850 | None:intergenic | 30.0% | |
| TTATGTGTAGGGATTTGTAA+AGG | - | chr4_2:67222830-67222849 | Msa0616960:CDS | 30.0% | |
| !!! | GTGTGAATGTTTTTTTGATC+CGG | - | chr4_2:67223096-67223115 | Msa0616960:CDS | 30.0% |
| CCGTATCAACTTATCATATG+TGG | - | chr4_2:67220739-67220758 | Msa0616960:intron | 35.0% | |
| GACAGTACATGCAATAGTTT+CGG | + | chr4_2:67220827-67220846 | None:intergenic | 35.0% | |
| ATGATAGCTTGAACTCAATC+AGG | + | chr4_2:67220891-67220910 | None:intergenic | 35.0% | |
| GATTGAGTTCAAGCTATCAT+AGG | - | chr4_2:67220891-67220910 | Msa0616960:exon | 35.0% | |
| !!! | TTTTTTATCGCTTGTTCTCG+AGG | - | chr4_2:67220920-67220939 | Msa0616960:CDS | 35.0% |
| CATTATATGTATGTGCAGCA+AGG | + | chr4_2:67221399-67221418 | None:intergenic | 35.0% | |
| GACATGGATATAGATACCAA+TGG | + | chr4_2:67221434-67221453 | None:intergenic | 35.0% | |
| TTTATCGTATGGTTCCTAAC+TGG | - | chr4_2:67221467-67221486 | Msa0616960:intron | 35.0% | |
| TGGAACATAGTTATCCAACT+TGG | + | chr4_2:67221494-67221513 | None:intergenic | 35.0% | |
| ! | TTGGAGCTTTTCACATTTCA+TGG | + | chr4_2:67221551-67221570 | None:intergenic | 35.0% |
| ! | TATACAAAAGCATACCATGC+TGG | + | chr4_2:67221768-67221787 | None:intergenic | 35.0% |
| TGTGCTTCAATCTAACTTCA+AGG | - | chr4_2:67222145-67222164 | Msa0616960:intron | 35.0% | |
| TGTGATCGTGTTCTTTCATA+TGG | - | chr4_2:67222208-67222227 | Msa0616960:intron | 35.0% | |
| TGAGATTACTGAGTTACAGA+CGG | - | chr4_2:67222239-67222258 | Msa0616960:intron | 35.0% | |
| GACATATATCGTTGAAGTTG+AGG | - | chr4_2:67222300-67222319 | Msa0616960:intron | 35.0% | |
| CTCTGCATTAGTGAATGTTA+GGG | + | chr4_2:67222353-67222372 | None:intergenic | 35.0% | |
| TCTCTGCATTAGTGAATGTT+AGG | + | chr4_2:67222354-67222373 | None:intergenic | 35.0% | |
| ATGCAAGGTATGCTTGTATA+TGG | + | chr4_2:67222448-67222467 | None:intergenic | 35.0% | |
| !!! | GCACATGTTTTGATATGAGT+TGG | - | chr4_2:67222474-67222493 | Msa0616960:intron | 35.0% |
| CTATGATCTCTAGATTCTTG+TGG | - | chr4_2:67222544-67222563 | Msa0616960:CDS | 35.0% | |
| GTAGAATAGGAGTCTACATT+AGG | + | chr4_2:67222809-67222828 | None:intergenic | 35.0% | |
| TCCTATTCTACCTTATGTGT+AGG | - | chr4_2:67222818-67222837 | Msa0616960:CDS | 35.0% | |
| CCTATTCTACCTTATGTGTA+GGG | - | chr4_2:67222819-67222838 | Msa0616960:CDS | 35.0% | |
| GCTCCTTGATATTGATATTC+TGG | + | chr4_2:67222869-67222888 | None:intergenic | 35.0% | |
| TGTGTGTACTTGTGTGATTA+AGG | - | chr4_2:67223074-67223093 | Msa0616960:intron | 35.0% | |
| TGAATGATGCCAGGAAAACA+TGG | + | chr4_2:67220286-67220305 | None:intergenic | 40.0% | |
| CCAACTTTATGAATGATGCC+AGG | + | chr4_2:67220295-67220314 | None:intergenic | 40.0% | |
| CCTGGCATCATTCATAAAGT+TGG | - | chr4_2:67220292-67220311 | Msa0616960:three_prime_UTR | 40.0% | |
| AGCCCGTGCAATGTTAATAT+TGG | + | chr4_2:67220378-67220397 | None:intergenic | 40.0% | |
| CTCTTATCTCGAAAAAGCAG+TGG | - | chr4_2:67220771-67220790 | Msa0616960:intron | 40.0% | |
| AGTACATGCAATAGTTTCGG+TGG | + | chr4_2:67220824-67220843 | None:intergenic | 40.0% | |
| GTGGAAAATGAAAACCGAGT+CGG | - | chr4_2:67221220-67221239 | Msa0616960:intron | 40.0% | |
| TTATCCAACTTGGTCCAGTT+AGG | + | chr4_2:67221484-67221503 | None:intergenic | 40.0% | |
| AAAATGGTGCATTTGGAGGA+TGG | - | chr4_2:67221649-67221668 | Msa0616960:CDS | 40.0% | |
| AAACATGGAAGAAGAGTCTG+AGG | + | chr4_2:67221792-67221811 | None:intergenic | 40.0% | |
| AAGCATAGGATGCGAAAACA+TGG | + | chr4_2:67221807-67221826 | None:intergenic | 40.0% | |
| TAGTCCCTAAAAGTGACATG+CGG | - | chr4_2:67222012-67222031 | Msa0616960:intron | 40.0% | |
| !!! | AACACCGCATGTCACTTTTA+GGG | + | chr4_2:67222019-67222038 | None:intergenic | 40.0% |
| !!! | AAACACCGCATGTCACTTTT+AGG | + | chr4_2:67222020-67222039 | None:intergenic | 40.0% |
| !! | ACATGCGGTGTTTGCTTTTA+TGG | - | chr4_2:67222027-67222046 | Msa0616960:intron | 40.0% |
| CTTCAAGGTGTAAGAGTTAG+AGG | - | chr4_2:67222160-67222179 | Msa0616960:intron | 40.0% | |
| TCGTGTTCTTTCATATGGCA+AGG | - | chr4_2:67222213-67222232 | Msa0616960:intron | 40.0% | |
| CGTGTTCTTTCATATGGCAA+GGG | - | chr4_2:67222214-67222233 | Msa0616960:intron | 40.0% | |
| !! | GTGATCCGATATTTTGAGCT+CGG | + | chr4_2:67222266-67222285 | None:intergenic | 40.0% |
| AACGATATATGTCGCAGTCA+CGG | + | chr4_2:67222293-67222312 | None:intergenic | 40.0% | |
| AGAATAGTTCACTCAGCCTA+TGG | + | chr4_2:67222601-67222620 | None:intergenic | 40.0% | |
| CCCTACACATAAGGTAGAAT+AGG | + | chr4_2:67222822-67222841 | None:intergenic | 40.0% | |
| GGAAAACATGGTACGGTAGA+TGG | + | chr4_2:67220274-67220293 | None:intergenic | 45.0% | |
| ! | TCTACCGTACCATGTTTTCC+TGG | - | chr4_2:67220274-67220293 | Msa0616960:three_prime_UTR | 45.0% |
| GATGCCAGGAAAACATGGTA+CGG | + | chr4_2:67220281-67220300 | None:intergenic | 45.0% | |
| ATTTGCACGCATCTTACCTC+TGG | - | chr4_2:67220471-67220490 | Msa0616960:intron | 45.0% | |
| GCATCTTACCTCTGGTGAAA+AGG | - | chr4_2:67220479-67220498 | Msa0616960:intron | 45.0% | |
| CTTACCTCTGGTGAAAAGGA+AGG | - | chr4_2:67220483-67220502 | Msa0616960:intron | 45.0% | |
| ! | ATCTCCTTCCTTTTCACCAG+AGG | + | chr4_2:67220490-67220509 | None:intergenic | 45.0% |
| TCGTGATCGAGGATTCCTTT+AGG | + | chr4_2:67220588-67220607 | None:intergenic | 45.0% | |
| AACATGAGTGAATCGTGCTC+TGG | + | chr4_2:67220863-67220882 | None:intergenic | 45.0% | |
| GTTAGGTGGTATGTATCGAG+TGG | - | chr4_2:67221201-67221220 | Msa0616960:intron | 45.0% | |
| GAAAATGAAAACCGAGTCGG+TGG | - | chr4_2:67221223-67221242 | Msa0616960:intron | 45.0% | |
| ! | CAAAACAGAAACCACCGACT+CGG | + | chr4_2:67221237-67221256 | None:intergenic | 45.0% |
| CATTTGGAGGATGGTCAGAA+GGG | - | chr4_2:67221658-67221677 | Msa0616960:CDS | 45.0% | |
| ATTTGGAGGATGGTCAGAAG+GGG | - | chr4_2:67221659-67221678 | Msa0616960:CDS | 45.0% | |
| ! | ACAGGAAGCACATAAAGTGC+AGG | + | chr4_2:67221913-67221932 | None:intergenic | 45.0% |
| ACGGACCGAGCTCAAAATAT+CGG | - | chr4_2:67222258-67222277 | Msa0616960:intron | 45.0% | |
| ACGATATATGTCGCAGTCAC+GGG | + | chr4_2:67222292-67222311 | None:intergenic | 45.0% | |
| ! | AAGTTGAGGCATTCTCACCT+AGG | - | chr4_2:67222314-67222333 | Msa0616960:intron | 45.0% |
| AACATGTGCTCAAGCATGCA+AGG | + | chr4_2:67222463-67222482 | None:intergenic | 45.0% | |
| CACTCAGCCTATGGAAACTT+TGG | + | chr4_2:67222592-67222611 | None:intergenic | 45.0% | |
| ! | GTCGGCATTATGGGCTACAT+CGG | - | chr4_2:67220191-67220210 | Msa0616960:three_prime_UTR | 50.0% |
| TGCTGACAGATACTGATCCC+TGG | + | chr4_2:67220422-67220441 | None:intergenic | 50.0% | |
| ! | GTGCTCTGGATGAATGCTCT+TGG | + | chr4_2:67220849-67220868 | None:intergenic | 50.0% |
| GGTTCCTAACTGGACCAAGT+TGG | - | chr4_2:67221477-67221496 | Msa0616960:intron | 50.0% | |
| GCATTTGGAGGATGGTCAGA+AGG | - | chr4_2:67221657-67221676 | Msa0616960:CDS | 50.0% | |
| !! | ACGCTTTGAAGCCTTGGGAT+CGG | + | chr4_2:67221742-67221761 | None:intergenic | 50.0% |
| !! | GGTGTACGCTTTGAAGCCTT+GGG | + | chr4_2:67221747-67221766 | None:intergenic | 50.0% |
| !! | TGGTGTACGCTTTGAAGCCT+TGG | + | chr4_2:67221748-67221767 | None:intergenic | 50.0% |
| CTTCAAAGCGTACACCAGCA+TGG | - | chr4_2:67221751-67221770 | Msa0616960:intron | 50.0% | |
| GTACTACGGAGCCGATCCCA+AGG | - | chr4_2:67221728-67221747 | Msa0616960:intron | 60.0% | |
| AGGGCTCGCTGTAGCTTCCT+AGG | + | chr4_2:67222334-67222353 | None:intergenic | 60.0% | |
| CGGGCACTCACTCGTGATCG+AGG | + | chr4_2:67220599-67220618 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 67220191 | 67223124 | 67220191 | ID=Msa0616960;Name=Msa0616960 |
| chr4_2 | mRNA | 67220191 | 67223124 | 67220191 | ID=Msa0616960-mRNA-1;Parent=Msa0616960;Name=Msa0616960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=9|1|1|1|0.6|0.5|6|302|221 |
| chr4_2 | exon | 67220191 | 67220475 | 67220191 | ID=Msa0616960-mRNA-1:exon:19184;Parent=Msa0616960-mRNA-1 |
| chr4_2 | exon | 67220881 | 67221108 | 67220881 | ID=Msa0616960-mRNA-1:exon:19183;Parent=Msa0616960-mRNA-1 |
| chr4_2 | exon | 67221543 | 67221682 | 67221543 | ID=Msa0616960-mRNA-1:exon:19182;Parent=Msa0616960-mRNA-1 |
| chr4_2 | exon | 67222498 | 67222606 | 67222498 | ID=Msa0616960-mRNA-1:exon:19181;Parent=Msa0616960-mRNA-1 |
| chr4_2 | exon | 67222708 | 67222892 | 67222708 | ID=Msa0616960-mRNA-1:exon:19180;Parent=Msa0616960-mRNA-1 |
| chr4_2 | exon | 67223095 | 67223124 | 67223095 | ID=Msa0616960-mRNA-1:exon:19179;Parent=Msa0616960-mRNA-1 |
| chr4_2 | five_prime_UTR | 67223116 | 67223124 | 67223116 | ID=Msa0616960-mRNA-1:five_prime_utr;Parent=Msa0616960-mRNA-1 |
| chr4_2 | CDS | 67223095 | 67223115 | 67223095 | ID=Msa0616960-mRNA-1:cds;Parent=Msa0616960-mRNA-1 |
| chr4_2 | CDS | 67222708 | 67222892 | 67222708 | ID=Msa0616960-mRNA-1:cds;Parent=Msa0616960-mRNA-1 |
| chr4_2 | CDS | 67222498 | 67222606 | 67222498 | ID=Msa0616960-mRNA-1:cds;Parent=Msa0616960-mRNA-1 |
| chr4_2 | CDS | 67221543 | 67221682 | 67221543 | ID=Msa0616960-mRNA-1:cds;Parent=Msa0616960-mRNA-1 |
| chr4_2 | CDS | 67220898 | 67221108 | 67220898 | ID=Msa0616960-mRNA-1:cds;Parent=Msa0616960-mRNA-1 |
| chr4_2 | three_prime_UTR | 67220881 | 67220897 | 67220881 | ID=Msa0616960-mRNA-1:three_prime_utr;Parent=Msa0616960-mRNA-1 |
| chr4_2 | three_prime_UTR | 67220191 | 67220475 | 67220191 | ID=Msa0616960-mRNA-1:three_prime_utr;Parent=Msa0616960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
