AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0951050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951050 MtrunA17_Chr6g0467101 98.974 195 2 0 1 195 1 195 2.94e-145 401
Msa0951050 MtrunA17_Chr1g0201541 63.810 210 58 3 1 195 1 207 6.89e-88 257
Msa0951050 MtrunA17_Chr8g0383401 50.237 211 82 5 1 195 1 204 2.25e-61 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951050 AT4G09830.1 62.626 198 64 3 1 195 1 191 1.68e-72 218
Msa0951050 AT5G64780.1 46.961 181 83 3 1 178 1 171 1.30e-45 149

Find 83 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTCAGCTTTATCAAAT+TGG 0.217281 6_3:+40456729 Msa0951050:CDS
CCAGTCACTTCAGGATCTTC+TGG 0.220585 6_3:+40456603 Msa0951050:CDS
GTCTGGATTCGCTTGCTCTT+TGG 0.231636 6_3:+40456936 Msa0951050:three_prime_UTR
TCAGGCTTTCCAGTCACTTC+AGG 0.296519 6_3:+40456594 Msa0951050:CDS
ATCCATGGCAGAATCATTAT+TGG 0.297537 6_3:-40456811 None:intergenic
AGCTGAAGATTTCGACGAAC+AGG 0.349902 6_3:-40456717 None:intergenic
CGTTTCTTCGCCATTGGAAT+CGG 0.355485 6_3:-40450066 None:intergenic
AACCATCACAATTCCTTGTC+TGG 0.363764 6_3:+40456919 Msa0951050:three_prime_UTR
CATGCAGACTAGTCCTCTAT+TGG 0.376398 6_3:+40456837 Msa0951050:exon
ATGATGCCTGTCACCAGTTC+AGG 0.381654 6_3:+40456576 Msa0951050:CDS
TGATGTAGTTAACTACATTC+AGG 0.382450 6_3:+40453520 Msa0951050:CDS
TCTTCTGGCCAAACGATAGC+TGG 0.384017 6_3:+40456618 Msa0951050:CDS
CGTCGACCGAGCGATTGGTT+TGG 0.391128 6_3:+40457018 Msa0951050:three_prime_UTR
GCATCATTGGTTGTGGCTGC+TGG 0.392642 6_3:-40456560 None:intergenic
AGAAAGCTTCTGATGATTCA+TGG 0.396363 6_3:-40450184 None:intergenic
AATGAGGGTTGTTGTTGATT+CGG 0.397849 6_3:-40450020 None:intergenic
GCCCGGCCCCAGCTATCGTT+TGG 0.407559 6_3:-40456626 None:intergenic
GACTTGCGTTTCTTCGCCAT+TGG 0.418361 6_3:-40450072 None:intergenic
CAAGGAATTGTGATGGTTGT+TGG 0.420570 6_3:-40456914 None:intergenic
GTCCACAGATTCTATCCATA+TGG 0.424399 6_3:+40457143 Msa0951050:three_prime_UTR
TTGTATTCTAAATTTCTTCA+AGG 0.430623 6_3:+40457221 Msa0951050:three_prime_UTR
TTTGAAAACACCGAGTTCTT+CGG 0.439137 6_3:-40456681 None:intergenic
CAGAATGAGTTAGATTATTG+TGG 0.452182 6_3:+40456498 Msa0951050:intron
ATCAGAGCGGAGTCCTTGCC+CGG 0.458881 6_3:-40456643 None:intergenic
TGTATTCTAAATTTCTTCAA+GGG 0.466457 6_3:+40457222 Msa0951050:three_prime_UTR
CGGTGGTGGATGGAGGAATG+AGG 0.471918 6_3:-40450036 None:intergenic
AACAACTGTAAATTGCCATA+TGG 0.477341 6_3:-40457158 None:intergenic
GGCCAAACGATAGCTGGGGC+CGG 0.480085 6_3:+40456624 Msa0951050:CDS
GCTTACGTCGACCGAGCGAT+TGG 0.484821 6_3:+40457013 Msa0951050:three_prime_UTR
TTTAATGGACAAACCAATAG+AGG 0.486577 6_3:-40456850 None:intergenic
GCCAAACGATAGCTGGGGCC+GGG 0.491569 6_3:+40456625 Msa0951050:CDS
GAACTGGTGACAGGCATCAT+TGG 0.493043 6_3:-40456573 None:intergenic
AGAATTAGCAGCGGTGGAGA+AGG 0.493812 6_3:-40450139 None:intergenic
ACGATAGCTGGGGCCGGGCA+AGG 0.495454 6_3:+40456630 Msa0951050:CDS
CGGCGGAGATCGGTGGTGGA+TGG 0.497980 6_3:-40450046 None:intergenic
GGTGCTCTGGGTGACATGGA+TGG 0.499547 6_3:-40456528 None:intergenic
CCATTGGAATCGGCGGAGAT+CGG 0.499729 6_3:-40450056 None:intergenic
CGGTGGTGCTCTGGGTGACA+TGG 0.500668 6_3:-40456532 None:intergenic
AGTGACTGGAAAGCCTGAAC+TGG 0.501227 6_3:-40456589 None:intergenic
CTTTATCAAATTGGCGAGGG+TGG 0.509933 6_3:+40456738 Msa0951050:CDS
CGGAGATCGGTGGTGGATGG+AGG 0.516588 6_3:-40450043 None:intergenic
CTTCTGGCCAAACGATAGCT+GGG 0.517507 6_3:+40456619 Msa0951050:CDS
GAATCGGCGGAGATCGGTGG+TGG 0.522126 6_3:-40450050 None:intergenic
AGAAAGAGAATTAGCAGCGG+TGG 0.534056 6_3:-40450145 None:intergenic
GGTGGTGGATGGAGGAATGA+GGG 0.535280 6_3:-40450035 None:intergenic
GGAAAGCCTGAACTGGTGAC+AGG 0.535544 6_3:-40456582 None:intergenic
CCAGAAGATCCTGAAGTGAC+TGG 0.538202 6_3:-40456603 None:intergenic
CCGATCTCCGCCGATTCCAA+TGG 0.539060 6_3:+40450056 Msa0951050:exon
AACAAGAAGAAGGAGGGTCG+AGG 0.541006 6_3:+40453486 Msa0951050:CDS
AAGCAACCCCTGAAATCTAA+AGG 0.541219 6_3:-40457088 None:intergenic
GGGGAGATTATGGAAAGAGA+GGG 0.550825 6_3:-40449989 None:intergenic
GTGACAGGCATCATTGGTTG+TGG 0.551259 6_3:-40456567 None:intergenic
GGTGGAGAAGGAAGCATACA+TGG 0.562243 6_3:-40450127 None:intergenic
TGCCATATGGATAGAATCTG+TGG 0.563081 6_3:-40457145 None:intergenic
TTCCAATAATGATTCTGCCA+TGG 0.570860 6_3:+40456809 Msa0951050:CDS
ATCGTGCAAGAAATGATAAG+AGG 0.572706 6_3:+40456959 Msa0951050:three_prime_UTR
GTATTCTAAATTTCTTCAAG+GGG 0.572902 6_3:+40457223 Msa0951050:three_prime_UTR
TGGACAAATACAGATTTACA+AGG 0.573959 6_3:-40457125 None:intergenic
CAGCTTTATCAAATTGGCGA+GGG 0.581186 6_3:+40456735 Msa0951050:CDS
GCTGAAGATTTCGACGAACA+GGG 0.582791 6_3:-40456716 None:intergenic
CTAGTCTGCATGCATATCCA+TGG 0.585175 6_3:-40456826 None:intergenic
TGAAACTCAGCCGAAGAACT+CGG 0.586864 6_3:+40456671 Msa0951050:CDS
TTCTTCGCCATTGGAATCGG+CGG 0.586954 6_3:-40450063 None:intergenic
CAAGTCTCGACGAAGTCGAT+CGG 0.588474 6_3:+40450103 Msa0951050:CDS
TTGGAATCGGCGGAGATCGG+TGG 0.591812 6_3:-40450053 None:intergenic
TGGATTTGGAAACAAGAAGA+AGG 0.601954 6_3:+40453476 Msa0951050:CDS
TTTGAACCTTTAGATTTCAG+GGG 0.621957 6_3:+40457082 Msa0951050:three_prime_UTR
ATCCAGACAAGGAATTGTGA+TGG 0.628373 6_3:-40456921 None:intergenic
TCGTGCAAGAAATGATAAGA+GGG 0.629564 6_3:+40456960 Msa0951050:three_prime_UTR
ACAAGAAGAAGGAGGGTCGA+GGG 0.630981 6_3:+40453487 Msa0951050:CDS
AAGACTCCAAACCAATCGCT+CGG 0.632492 6_3:-40457024 None:intergenic
TATTCTAAATTTCTTCAAGG+GGG 0.633432 6_3:+40457224 Msa0951050:three_prime_UTR
TCAGCTTTATCAAATTGGCG+AGG 0.633475 6_3:+40456734 Msa0951050:CDS
CAATTTACAGTTGTTGACGC+CGG 0.634213 6_3:+40457166 Msa0951050:three_prime_UTR
TGCAAGAAATGATAAGAGGG+TGG 0.659280 6_3:+40456963 Msa0951050:three_prime_UTR
AGAGCAAGCGAATCCAGACA+AGG 0.659923 6_3:-40456932 None:intergenic
TTTGGAAACAAGAAGAAGGA+GGG 0.660375 6_3:+40453480 Msa0951050:CDS
TTCTGGCCAAACGATAGCTG+GGG 0.665081 6_3:+40456620 Msa0951050:CDS
ATTTGGAAACAAGAAGAAGG+AGG 0.667699 6_3:+40453479 Msa0951050:CDS
GACTTCGTCGAGACTTGACG+CGG 0.668540 6_3:-40450097 None:intergenic
GGACAAATACAGATTTACAA+GGG 0.703342 6_3:-40457124 None:intergenic
CTGAGAAAGAGAATTAGCAG+CGG 0.709453 6_3:-40450148 None:intergenic
GAGTTTCACAATAATCAGAG+CGG 0.750112 6_3:-40456656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAAATAATTT+TGG + chr6_3:40451192-40451211 Msa0951050:intron 0.0%
!!! TGATTTTTTCAAATTATTAA+CGG + chr6_3:40450497-40450516 Msa0951050:intron 10.0%
!!! AAAAAAAAAAATAATTTTGG+TGG + chr6_3:40451195-40451214 Msa0951050:intron 10.0%
!! GAATAAAAAATAAAAAACAA+GGG - chr6_3:40452638-40452657 None:intergenic 10.0%
!! AGAATAAAAAATAAAAAACA+AGG - chr6_3:40452639-40452658 None:intergenic 10.0%
!!! TTTTATTTTTAAGTTTGAAT+TGG + chr6_3:40452659-40452678 Msa0951050:intron 10.0%
!! AAAAAAAATGAAAAATAAAG+AGG - chr6_3:40454821-40454840 None:intergenic 10.0%
!! AGAATAAAATGATTATATTT+GGG + chr6_3:40455250-40455269 Msa0951050:intron 10.0%
!! TCTTAAAAAATAACTATTAA+GGG + chr6_3:40456017-40456036 Msa0951050:intron 10.0%
!! TCAAATATAATATATAGATA+AGG - chr6_3:40456064-40456083 None:intergenic 10.0%
!! AAACAACAAAAAAATTCAAA+AGG - chr6_3:40450264-40450283 None:intergenic 15.0%
!!! AAATGTTGTTTTTGTTTTTA+AGG + chr6_3:40450357-40450376 Msa0951050:intron 15.0%
!!! TTGTTTTTAAGTGTTTAATT+TGG + chr6_3:40450892-40450911 Msa0951050:intron 15.0%
!!! TTTTGATTTATTTATGTTGA+TGG + chr6_3:40451457-40451476 Msa0951050:intron 15.0%
!!! TATGTTTTTTTTTTTTCTTC+AGG + chr6_3:40452290-40452309 Msa0951050:intron 15.0%
!!! TTGTTTTTAAGTTTGATTTT+GGG + chr6_3:40452332-40452351 Msa0951050:intron 15.0%
!!! TGTTGTTTTTAACTTTAATT+TGG + chr6_3:40452811-40452830 Msa0951050:intron 15.0%
!!! CTTATATTTGTAAATTTGTT+GGG + chr6_3:40453891-40453910 Msa0951050:intron 15.0%
!!! ATGTTGAAATGTTTTTATAT+TGG + chr6_3:40454062-40454081 Msa0951050:intron 15.0%
!!! AAATGTTTTTATATTGGAAA+GGG + chr6_3:40454068-40454087 Msa0951050:intron 15.0%
!! AAAATGCAAATATAAAAGTA+GGG - chr6_3:40454702-40454721 None:intergenic 15.0%
!! TAAAATGCAAATATAAAAGT+AGG - chr6_3:40454703-40454722 None:intergenic 15.0%
!!! TATTTGCATTTTAAAATTGA+TGG + chr6_3:40454710-40454729 Msa0951050:intron 15.0%
!! AAAATAAAGAGGTAAATAAA+AGG - chr6_3:40454810-40454829 None:intergenic 15.0%
!! AATTTAAAAAGAAGAAATGA+GGG - chr6_3:40455140-40455159 None:intergenic 15.0%
!!! TAATCATTTTATTCTCTATT+TGG - chr6_3:40455245-40455264 None:intergenic 15.0%
!! GAGAATAAAATGATTATATT+TGG + chr6_3:40455249-40455268 Msa0951050:intron 15.0%
!! GAATAAAATGATTATATTTG+GGG + chr6_3:40455251-40455270 Msa0951050:intron 15.0%
!!! TAATAGTTATTTTTTAAGAG+AGG - chr6_3:40456016-40456035 None:intergenic 15.0%
!! CTCTTAAAAAATAACTATTA+AGG + chr6_3:40456016-40456035 Msa0951050:intron 15.0%
!! CTTAAAAAATAACTATTAAG+GGG + chr6_3:40456018-40456037 Msa0951050:intron 15.0%
!! TTAAAAAATAACTATTAAGG+GGG + chr6_3:40456019-40456038 Msa0951050:intron 15.0%
!! TTTATATTAATAAATCACTC+TGG - chr6_3:40456293-40456312 None:intergenic 15.0%
!!! GCTTAATTCTTTAAAATTAT+TGG + chr6_3:40456420-40456439 Msa0951050:intron 15.0%
!! TTTAATACATGTATTTACTT+AGG - chr6_3:40456461-40456480 None:intergenic 15.0%
!!! AATTTTTATTTAGTTGCGTT+TGG + chr6_3:40450317-40450336 Msa0951050:intron 20.0%
!!! GTATTTGATTTCTTGTTTTT+AGG + chr6_3:40450608-40450627 Msa0951050:intron 20.0%
!! ATTAGTGTAATTATATGTGT+CGG - chr6_3:40450801-40450820 None:intergenic 20.0%
!! ATAAAACCAAATACAACTAA+GGG - chr6_3:40451021-40451040 None:intergenic 20.0%
!!! AAAAATAATTTTGGTGGTTA+TGG + chr6_3:40451201-40451220 Msa0951050:intron 20.0%
!! AAAGTTAAAACAAGTAACAT+GGG - chr6_3:40451801-40451820 None:intergenic 20.0%
!! TAAAGTTAAAACAAGTAACA+TGG - chr6_3:40451802-40451821 None:intergenic 20.0%
!!! TAACTTTACTTTTGTGTTTA+TGG + chr6_3:40451814-40451833 Msa0951050:intron 20.0%
!! TATAAGCATAAAATCAACAA+GGG - chr6_3:40452006-40452025 None:intergenic 20.0%
!! TTATAAGCATAAAATCAACA+AGG - chr6_3:40452007-40452026 None:intergenic 20.0%
!!! TTTTATGCTTATAATGTTGT+TGG + chr6_3:40452013-40452032 Msa0951050:intron 20.0%
!! TGGTAAATTTCAAAATTGTT+AGG + chr6_3:40452075-40452094 Msa0951050:intron 20.0%
!!! TTCTGTTACAATTTATCTTT+TGG + chr6_3:40452240-40452259 Msa0951050:intron 20.0%
!!! TCTGTTACAATTTATCTTTT+GGG + chr6_3:40452241-40452260 Msa0951050:intron 20.0%
!!! GTTGTTTTTAAGTTTGATTT+TGG + chr6_3:40452331-40452350 Msa0951050:intron 20.0%
!!! TCATTTTTTGTGATTCTTAT+TGG + chr6_3:40452929-40452948 Msa0951050:intron 20.0%
!!! AATTTTCTGTTATAAAGTAC+CGG + chr6_3:40452967-40452986 Msa0951050:intron 20.0%
!!! GTATTGATAATATATCAATG+TGG + chr6_3:40453419-40453438 Msa0951050:intron 20.0%
!! GCTTATATTTGTAAATTTGT+TGG + chr6_3:40453890-40453909 Msa0951050:intron 20.0%
!!! GAAATGTTTTTATATTGGAA+AGG + chr6_3:40454067-40454086 Msa0951050:intron 20.0%
!! TAACTATTGAAAATGAAACA+TGG - chr6_3:40454167-40454186 None:intergenic 20.0%
!!! ATTTTCAATAGTTATACAAC+AGG + chr6_3:40454173-40454192 Msa0951050:intron 20.0%
!!! TTTTGCAAACATGATTATTT+TGG + chr6_3:40454230-40454249 Msa0951050:intron 20.0%
!! AAAATCCTATGAAGTTAAAA+AGG + chr6_3:40454438-40454457 Msa0951050:intron 20.0%
!!! TTTAAAATTGATGGTATGAA+TGG + chr6_3:40454719-40454738 Msa0951050:intron 20.0%
!!! GGTAAAACATTTTGAAAATA+AGG - chr6_3:40454964-40454983 None:intergenic 20.0%
!! GAATTTAAAAAGAAGAAATG+AGG - chr6_3:40455141-40455160 None:intergenic 20.0%
!! TAATACAGAATTGAATTTGA+AGG - chr6_3:40455203-40455222 None:intergenic 20.0%
!!! CTATTTGCCATATTTTTAAA+CGG + chr6_3:40455362-40455381 Msa0951050:intron 20.0%
!!! TATTTTTCCATTTATCTGTA+TGG + chr6_3:40455475-40455494 Msa0951050:intron 20.0%
!!! AATTATTGATTGACACATTT+AGG + chr6_3:40455601-40455620 Msa0951050:intron 20.0%
!!! ATTTAGGTACTTCAATATTT+TGG + chr6_3:40455617-40455636 Msa0951050:intron 20.0%
!!! TTTAGGTACTTCAATATTTT+GGG + chr6_3:40455618-40455637 Msa0951050:intron 20.0%
!!! TTTTTAGATCTCAGAATAAA+TGG - chr6_3:40455732-40455751 None:intergenic 20.0%
!! ATTATGAATATGTCTTTGTA+TGG + chr6_3:40456119-40456138 Msa0951050:intron 20.0%
!! TATATAACGATATATACTGA+TGG - chr6_3:40456153-40456172 None:intergenic 20.0%
!! CCTATTTATAAGAGATATTT+GGG - chr6_3:40456269-40456288 None:intergenic 20.0%
!! TCCTATTTATAAGAGATATT+TGG - chr6_3:40456270-40456289 None:intergenic 20.0%
!!! AAATTATTGGTACATGATTT+TGG + chr6_3:40456433-40456452 Msa0951050:intron 20.0%
!! AGGTCAGATAAAAAATTTAA+TGG - chr6_3:40456868-40456887 None:intergenic 20.0%
!! TTGTATTCTAAATTTCTTCA+AGG + chr6_3:40457221-40457240 Msa0951050:three_prime_UTR 20.0%
!! TGTATTCTAAATTTCTTCAA+GGG + chr6_3:40457222-40457241 Msa0951050:three_prime_UTR 20.0%
!!! CTTGTACTTTTTAACATTAA+GGG + chr6_3:40457261-40457280 Msa0951050:three_prime_UTR 20.0%
!!! TTTTAAGGTTGTAATGTTGT+TGG + chr6_3:40450372-40450391 Msa0951050:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_3:40450472-40450491 None:intergenic 25.0%
! TTTCAAATTATTAACGGTGT+TGG + chr6_3:40450503-40450522 Msa0951050:intron 25.0%
!!! TGTTGTTTTGAAGTTTGATT+TGG + chr6_3:40450648-40450667 Msa0951050:intron 25.0%
!!! AGTGTTTAATTTGGTGTTTA+TGG + chr6_3:40450901-40450920 Msa0951050:intron 25.0%
!! ATGTTGTTGGTCTAATAAAA+TGG + chr6_3:40450929-40450948 Msa0951050:intron 25.0%
!!! CTATCAATTTTGATATTGTC+AGG - chr6_3:40450958-40450977 None:intergenic 25.0%
! CTGACAATATCAAAATTGAT+AGG + chr6_3:40450956-40450975 Msa0951050:intron 25.0%
! TAAAACCAAATACAACTAAG+GGG - chr6_3:40451020-40451039 None:intergenic 25.0%
! CATAAAACCAAATACAACTA+AGG - chr6_3:40451022-40451041 None:intergenic 25.0%
!!! GTCGATTTTAAGTTTGATTT+TGG + chr6_3:40451081-40451100 Msa0951050:intron 25.0%
! CAAAACAATGTTTGATTAAG+TGG - chr6_3:40451370-40451389 None:intergenic 25.0%
! TACAAAATATTGTCAGATAG+CGG + chr6_3:40451697-40451716 Msa0951050:intron 25.0%
! TCACAGATATATGAAAATAG+TGG - chr6_3:40451768-40451787 None:intergenic 25.0%
! ACATCAAAACAATGTTTGAT+TGG - chr6_3:40451374-40451393 None:intergenic 25.0%
! AAATTTCAAAATTGTTAGGC+TGG + chr6_3:40452079-40452098 Msa0951050:intron 25.0%
! CTTAAAACTCATAAACACAA+AGG - chr6_3:40452145-40452164 None:intergenic 25.0%
!! CTTTGTGTTTATGAGTTTTA+AGG + chr6_3:40452143-40452162 Msa0951050:intron 25.0%
! CAAAACAATGTTTGATTAAG+TGG - chr6_3:40451370-40451389 None:intergenic 25.0%
!!! AAGTTTGATTTTGGGTTTTT+TGG + chr6_3:40452340-40452359 Msa0951050:intron 25.0%
!!! TTTTTTGGTTGTAATGTTGT+TGG + chr6_3:40452355-40452374 Msa0951050:intron 25.0%
! CAAACCAATGTTTAATTAAG+TGG - chr6_3:40452512-40452531 None:intergenic 25.0%
!! TTGAATTTTCTCATGTTGTA+GGG + chr6_3:40452882-40452901 Msa0951050:intron 25.0%
! TACAAAATGTTGTCAAATAG+TGG + chr6_3:40453042-40453061 Msa0951050:intron 25.0%
! CAAAATCCTCTATGAAATAA+TGG - chr6_3:40453077-40453096 None:intergenic 25.0%
! TATGTTATGGATTTAAAAGC+TGG + chr6_3:40453294-40453313 Msa0951050:intron 25.0%
!! AAAAACTTTATCAGTGGATT+TGG + chr6_3:40453462-40453481 Msa0951050:CDS 25.0%
! AAAATACTACACAGAATAAG+AGG - chr6_3:40454037-40454056 None:intergenic 25.0%
! TTGCTATATTCAGTATTTGT+AGG + chr6_3:40454349-40454368 Msa0951050:intron 25.0%
!!! ATAGGATTTTATGTTAGCTT+GGG - chr6_3:40454428-40454447 None:intergenic 25.0%
!! GTAAAATGGTAGATTTTCAT+CGG - chr6_3:40454672-40454691 None:intergenic 25.0%
!! TCCATTGCTTCTTATATTTT+AGG + chr6_3:40454869-40454888 Msa0951050:intron 25.0%
! TCCTAAAATATAAGAAGCAA+TGG - chr6_3:40454873-40454892 None:intergenic 25.0%
! ATGTCAAAATGAATTTGAGT+CGG + chr6_3:40455058-40455077 Msa0951050:intron 25.0%
! TTATTCTCTATTTGGTAAAG+CGG - chr6_3:40455237-40455256 None:intergenic 25.0%
!! AATGATTATATTTGGGGTTT+AGG + chr6_3:40455257-40455276 Msa0951050:intron 25.0%
! TAAAAATATGGCAAATAGTG+TGG - chr6_3:40455360-40455379 None:intergenic 25.0%
!! TGATTTTATTCCGTCAATTT+TGG - chr6_3:40455510-40455529 None:intergenic 25.0%
! TATCATATGTATACTTGTGT+CGG - chr6_3:40455536-40455555 None:intergenic 25.0%
!! TTAGGTACTTCAATATTTTG+GGG + chr6_3:40455619-40455638 Msa0951050:intron 25.0%
! TAAGAGAGAAATATGCATTT+AGG + chr6_3:40456084-40456103 Msa0951050:intron 25.0%
! CCCAAATATCTCTTATAAAT+AGG + chr6_3:40456266-40456285 Msa0951050:intron 25.0%
! AAAAATCGTATCAAGTATCT+AGG + chr6_3:40456311-40456330 Msa0951050:intron 25.0%
! TGCATTGTTAAACAAATAAG+AGG + chr6_3:40456364-40456383 Msa0951050:intron 25.0%
! GCATTGTTAAACAAATAAGA+GGG + chr6_3:40456365-40456384 Msa0951050:intron 25.0%
!! AATCTTCAGCTTTATCAAAT+TGG + chr6_3:40456729-40456748 Msa0951050:CDS 25.0%
!! GCTAATTCTTGTTACATTTT+TGG + chr6_3:40456987-40457006 Msa0951050:three_prime_UTR 25.0%
!! ATTTTGAACCTTTAGATTTC+AGG + chr6_3:40457080-40457099 Msa0951050:three_prime_UTR 25.0%
!! TTTTGAACCTTTAGATTTCA+GGG + chr6_3:40457081-40457100 Msa0951050:three_prime_UTR 25.0%
! GTATTCTAAATTTCTTCAAG+GGG + chr6_3:40457223-40457242 Msa0951050:three_prime_UTR 25.0%
! TATTCTAAATTTCTTCAAGG+GGG + chr6_3:40457224-40457243 Msa0951050:three_prime_UTR 25.0%
!!! GCTTGTACTTTTTAACATTA+AGG + chr6_3:40457260-40457279 Msa0951050:three_prime_UTR 25.0%
!! GAAGTTTGATTTGGTGTTTA+TGG + chr6_3:40450657-40450676 Msa0951050:intron 30.0%
GTTTATGGTTGTATTGTTGT+TGG + chr6_3:40450672-40450691 Msa0951050:intron 30.0%
CATATTTCACAACTTGAACT+AGG - chr6_3:40450738-40450757 None:intergenic 30.0%
!! CTAGTTCAAGTTGTGAAATA+TGG + chr6_3:40450736-40450755 Msa0951050:intron 30.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_3:40450916-40450935 Msa0951050:intron 30.0%
AAAACCAAATACAACTAAGG+GGG - chr6_3:40451019-40451038 None:intergenic 30.0%
!!! AGTTGTATTTGGTTTTATGC+AGG + chr6_3:40451023-40451042 Msa0951050:intron 30.0%
!!! AAGTTTGATTTTGGTGTTGT+TGG + chr6_3:40451090-40451109 Msa0951050:intron 30.0%
GGTTAATCATGAGACATATT+CGG - chr6_3:40451296-40451315 None:intergenic 30.0%
GAATATGTCTCATGATTAAC+CGG + chr6_3:40451295-40451314 Msa0951050:intron 30.0%
CTTATGTTGTAGAAAAGAGT+TGG + chr6_3:40451411-40451430 Msa0951050:intron 30.0%
!!! CGATGCTTGATTTTTTTGTT+TGG + chr6_3:40451488-40451507 Msa0951050:intron 30.0%
TTGTTAAATAGCAGCTATAG+TGG + chr6_3:40451516-40451535 Msa0951050:intron 30.0%
TAGTGTTTCACAATGTTGAT+GGG - chr6_3:40451616-40451635 None:intergenic 30.0%
ATAGTGTTTCACAATGTTGA+TGG - chr6_3:40451617-40451636 None:intergenic 30.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_3:40450916-40450935 Msa0951050:intron 30.0%
AAAACTCTTCTCAACAACAT+GGG - chr6_3:40451931-40451950 None:intergenic 30.0%
AAAAACTCTTCTCAACAACA+TGG - chr6_3:40451932-40451951 None:intergenic 30.0%
! ATGTTGTTGAGAAGAGTTTT+TGG + chr6_3:40451931-40451950 Msa0951050:intron 30.0%
! GGATATTTTATGTGGTTACT+CGG + chr6_3:40452100-40452119 Msa0951050:intron 30.0%
! GATATTTTATGTGGTTACTC+GGG + chr6_3:40452101-40452120 Msa0951050:intron 30.0%
! GTTACAATTTATCTTTTGGG+TGG + chr6_3:40452244-40452263 Msa0951050:intron 30.0%
!! GCAATTCTGAAATTGTTAGA+CGG + chr6_3:40452419-40452438 Msa0951050:intron 30.0%
! CTTGCCACTTAATTAAACAT+TGG + chr6_3:40452505-40452524 Msa0951050:intron 30.0%
ACAACAAACAAAAACAACGT+GGG - chr6_3:40452797-40452816 None:intergenic 30.0%
AACAACAAACAAAAACAACG+TGG - chr6_3:40452798-40452817 None:intergenic 30.0%
! GTTGAATTTTCTCATGTTGT+AGG + chr6_3:40452881-40452900 Msa0951050:intron 30.0%
TTGTACTAAATAGCGTATTG+AGG - chr6_3:40453027-40453046 None:intergenic 30.0%
GCTATACCATTATTTCATAG+AGG + chr6_3:40453068-40453087 Msa0951050:intron 30.0%
TACAAAATGTTGTCAGATAG+CGG + chr6_3:40453132-40453151 Msa0951050:intron 30.0%
! TATCTGCAATTGATGACATT+AGG + chr6_3:40453214-40453233 Msa0951050:intron 30.0%
! TGACATTAGGATTGATTCTT+TGG + chr6_3:40453227-40453246 Msa0951050:intron 30.0%
! ATTAGGATTGATTCTTTGGA+TGG + chr6_3:40453231-40453250 Msa0951050:intron 30.0%
!! TAGACAAGAACAATTTGTTG+AGG + chr6_3:40453350-40453369 Msa0951050:intron 30.0%
TGGAATGTTCTAATGATATC+AGG + chr6_3:40453439-40453458 Msa0951050:intron 30.0%
ATCAGGAAAAACTTTATCAG+TGG + chr6_3:40453456-40453475 Msa0951050:intron 30.0%
TGATGTAGTTAACTACATTC+AGG + chr6_3:40453520-40453539 Msa0951050:CDS 30.0%
AAAACATATACGCATAGTAC+TGG + chr6_3:40453627-40453646 Msa0951050:intron 30.0%
AAAGGATTGAAGTTATGACA+AGG + chr6_3:40453704-40453723 Msa0951050:intron 30.0%
AAGGATTGAAGTTATGACAA+GGG + chr6_3:40453705-40453724 Msa0951050:intron 30.0%
TAATCACGTCAATTACCATA+TGG - chr6_3:40453960-40453979 None:intergenic 30.0%
TATGGTAATTGACGTGATTA+TGG + chr6_3:40453960-40453979 Msa0951050:intron 30.0%
ATGGTAATTGACGTGATTAT+GGG + chr6_3:40453961-40453980 Msa0951050:intron 30.0%
AATCGGCTAAAATTCTAAGT+GGG + chr6_3:40454097-40454116 Msa0951050:intron 30.0%
AAGTTGTTATCCTTTCTTGT+GGG + chr6_3:40454253-40454272 Msa0951050:intron 30.0%
! CATAGGATTTTATGTTAGCT+TGG - chr6_3:40454429-40454448 None:intergenic 30.0%
!!! AAAGTCTTTTTCAGAGTTGA+CGG + chr6_3:40454629-40454648 Msa0951050:intron 30.0%
AGTAGGGTGAAATTGTAAAA+TGG - chr6_3:40454686-40454705 None:intergenic 30.0%
TGATGGTATGAATGGAAAAA+TGG + chr6_3:40454727-40454746 Msa0951050:intron 30.0%
AAAGGTTAACAGCATACAAA+CGG - chr6_3:40454845-40454864 None:intergenic 30.0%
TGTCAAAATGAATTTGAGTC+GGG + chr6_3:40455059-40455078 Msa0951050:intron 30.0%
TATTCTCTATTTGGTAAAGC+GGG - chr6_3:40455236-40455255 None:intergenic 30.0%
!! TTTGCCATATTTTTAAACGG+CGG + chr6_3:40455365-40455384 Msa0951050:intron 30.0%
ATTCTCGGAAAATAGAACTA+TGG + chr6_3:40455434-40455453 Msa0951050:intron 30.0%
TTCTCGGAAAATAGAACTAT+GGG + chr6_3:40455435-40455454 Msa0951050:intron 30.0%
TTCCATTTATCTGTATGGTT+AGG + chr6_3:40455480-40455499 Msa0951050:intron 30.0%
AACCTAACCATACAGATAAA+TGG - chr6_3:40455485-40455504 None:intergenic 30.0%
! GTTAGGTTTTCCAAAATTGA+CGG + chr6_3:40455497-40455516 Msa0951050:intron 30.0%
! AAAATTTGGAACATACTCCT+AGG - chr6_3:40455574-40455593 None:intergenic 30.0%
TAAAAAATGAGACATGCTTG+TGG + chr6_3:40455746-40455765 Msa0951050:intron 30.0%
AAAAAATGAGACATGCTTGT+GGG + chr6_3:40455747-40455766 Msa0951050:intron 30.0%
!!! CAGTGATCATTTTCTAGAAT+TGG + chr6_3:40455806-40455825 Msa0951050:intron 30.0%
CCTAAATGTTTCTTCCATAT+AGG - chr6_3:40456187-40456206 None:intergenic 30.0%
CCTATATGGAAGAAACATTT+AGG + chr6_3:40456184-40456203 Msa0951050:intron 30.0%
GAAACATTTAGGTCAACAAA+AGG + chr6_3:40456195-40456214 Msa0951050:intron 30.0%
! TCAACAACAGTTGATGTATT+TGG - chr6_3:40456246-40456265 None:intergenic 30.0%
TATAGATGTAGTGTGACATT+CGG + chr6_3:40456394-40456413 Msa0951050:intron 30.0%
CAGAATGAGTTAGATTATTG+TGG + chr6_3:40456498-40456517 Msa0951050:intron 30.0%
! TTTAATGGACAAACCAATAG+AGG - chr6_3:40456853-40456872 None:intergenic 30.0%
TGCATTGAAAAACTTTACAG+TGG - chr6_3:40457056-40457075 None:intergenic 30.0%
TTTGAACCTTTAGATTTCAG+GGG + chr6_3:40457082-40457101 Msa0951050:three_prime_UTR 30.0%
GGACAAATACAGATTTACAA+GGG - chr6_3:40457127-40457146 None:intergenic 30.0%
TGGACAAATACAGATTTACA+AGG - chr6_3:40457128-40457147 None:intergenic 30.0%
AACAACTGTAAATTGCCATA+TGG - chr6_3:40457161-40457180 None:intergenic 30.0%
AAAAAAGCAAAGAGCAAAAC+CGG - chr6_3:40457188-40457207 None:intergenic 30.0%
!!! TTGTTGATTCGGCTTTTAAG+GGG - chr6_3:40450012-40450031 None:intergenic 35.0%
!!! GTTGTTGATTCGGCTTTTAA+GGG - chr6_3:40450013-40450032 None:intergenic 35.0%
!!! TGTTGTTGATTCGGCTTTTA+AGG - chr6_3:40450014-40450033 None:intergenic 35.0%
! AATGAGGGTTGTTGTTGATT+CGG - chr6_3:40450023-40450042 None:intergenic 35.0%
AGAAAGCTTCTGATGATTCA+TGG - chr6_3:40450187-40450206 None:intergenic 35.0%
CAAAAGGAGAGAAAGAGATT+TGG - chr6_3:40450248-40450267 None:intergenic 35.0%
CTAATAGCTTCATAGCTTGA+AGG - chr6_3:40450436-40450455 None:intergenic 35.0%
! ATTATATGTGTCGGTGACAT+AGG - chr6_3:40450792-40450811 None:intergenic 35.0%
TTGATAGGTTAGACGTTTCA+TGG + chr6_3:40450971-40450990 Msa0951050:intron 35.0%
TTAGACGTTTCATGGTTACT+CGG + chr6_3:40450979-40450998 Msa0951050:intron 35.0%
AAAACCCCCTTAGTTGTATT+TGG + chr6_3:40451012-40451031 Msa0951050:intron 35.0%
! GATTAACCGGATTTGAGTTT+CGG + chr6_3:40451308-40451327 Msa0951050:intron 35.0%
! ATTAACCGGATTTGAGTTTC+GGG + chr6_3:40451309-40451328 Msa0951050:intron 35.0%
ATGTTGTAGAAAAGAGTTGG+TGG + chr6_3:40451414-40451433 Msa0951050:intron 35.0%
! TGTTGTAGAAAAGAGTTGGT+GGG + chr6_3:40451415-40451434 Msa0951050:intron 35.0%
AGTGTATTGCAGAACAATAG+CGG + chr6_3:40451585-40451604 Msa0951050:intron 35.0%
! GTTAGGCTGGATATTTTATG+TGG + chr6_3:40452092-40452111 Msa0951050:intron 35.0%
TCAGAATTGCTAGTTCAACT+AGG - chr6_3:40452409-40452428 None:intergenic 35.0%
GAAATTGTTAGACGGAACTT+CGG + chr6_3:40452427-40452446 Msa0951050:intron 35.0%
! CCAACTTTTCTCTACAACAT+AGG - chr6_3:40452561-40452580 None:intergenic 35.0%
CCTATGTTGTAGAGAAAAGT+TGG + chr6_3:40452558-40452577 Msa0951050:intron 35.0%
ATGTTGTAGAGAAAAGTTGG+TGG + chr6_3:40452561-40452580 Msa0951050:intron 35.0%
! TGTTGTAGAGAAAAGTTGGT+GGG + chr6_3:40452562-40452581 Msa0951050:intron 35.0%
TCTTACCGATAACATTACAG+CGG - chr6_3:40452691-40452710 None:intergenic 35.0%
TGGCACTACTGAAATTGATA+GGG + chr6_3:40452722-40452741 Msa0951050:intron 35.0%
! AGACATTTTCTGTGGTTACT+CGG + chr6_3:40452746-40452765 Msa0951050:intron 35.0%
AACAAAAACAACGTGGGAAA+AGG - chr6_3:40452791-40452810 None:intergenic 35.0%
GCTTATTGCTGTAATGTCAT+TGG + chr6_3:40452835-40452854 Msa0951050:intron 35.0%
TTGCAGATAGCAGAAAATAG+TGG - chr6_3:40453203-40453222 None:intergenic 35.0%
TACAGCATTGTGCTATGTTA+TGG + chr6_3:40453281-40453300 Msa0951050:intron 35.0%
TGTTGAGGAAATAGTTTGAG+TGG + chr6_3:40453365-40453384 Msa0951050:intron 35.0%
TGGATTTGGAAACAAGAAGA+AGG + chr6_3:40453476-40453495 Msa0951050:CDS 35.0%
ATTTGGAAACAAGAAGAAGG+AGG + chr6_3:40453479-40453498 Msa0951050:CDS 35.0%
TTTGGAAACAAGAAGAAGGA+GGG + chr6_3:40453480-40453499 Msa0951050:CDS 35.0%
AGAGAGATTGACTGTAACAA+AGG + chr6_3:40453686-40453705 Msa0951050:intron 35.0%
TTCAAAGTACAGCTGTGTAA+CGG + chr6_3:40453829-40453848 Msa0951050:intron 35.0%
TAATTGACGTGATTATGGGA+TGG + chr6_3:40453965-40453984 Msa0951050:intron 35.0%
AACCACTTGACAACCAAAAA+GGG - chr6_3:40453995-40454014 None:intergenic 35.0%
CAGAATAAGAGGTCACATTA+GGG - chr6_3:40454026-40454045 None:intergenic 35.0%
ACAGAATAAGAGGTCACATT+AGG - chr6_3:40454027-40454046 None:intergenic 35.0%
ATTGGAAAGGGTCAATGAAT+CGG + chr6_3:40454080-40454099 Msa0951050:intron 35.0%
GAATCGGCTAAAATTCTAAG+TGG + chr6_3:40454096-40454115 Msa0951050:intron 35.0%
GAAGTTGTTATCCTTTCTTG+TGG + chr6_3:40454252-40454271 Msa0951050:intron 35.0%
!!! AAGCCTAGTTTTTTCAGGTT+GGG - chr6_3:40454402-40454421 None:intergenic 35.0%
!!! TAAGCCTAGTTTTTTCAGGT+TGG - chr6_3:40454403-40454422 None:intergenic 35.0%
AACCTGAAAAAACTAGGCTT+AGG + chr6_3:40454402-40454421 Msa0951050:intron 35.0%
!!! TGCAGCCTTTTTAACTTCAT+AGG - chr6_3:40454446-40454465 None:intergenic 35.0%
AAGTTGAAGATACAGAACAG+AGG - chr6_3:40454484-40454503 None:intergenic 35.0%
GAGAAAAAGAATGAGAGCAA+TGG - chr6_3:40454518-40454537 None:intergenic 35.0%
! TTGCTCTCATTCTTTTTCTC+CGG + chr6_3:40454518-40454537 Msa0951050:intron 35.0%
TGGTATGAATGGAAAAATGG+AGG + chr6_3:40454730-40454749 Msa0951050:intron 35.0%
TAAGAAGCAATGGAGAGAAA+AGG - chr6_3:40454863-40454882 None:intergenic 35.0%
TCAGCTTAACTCACATTCAA+TGG - chr6_3:40455008-40455027 None:intergenic 35.0%
GTCAAAATGAATTTGAGTCG+GGG + chr6_3:40455060-40455079 Msa0951050:intron 35.0%
ACAACCGCCGTTTAAAAATA+TGG - chr6_3:40455372-40455391 None:intergenic 35.0%
! ATTTTTAAACGGCGGTTGTT+TGG + chr6_3:40455373-40455392 Msa0951050:intron 35.0%
TGACTGTGATTGAGAATTCT+CGG + chr6_3:40455419-40455438 Msa0951050:intron 35.0%
CAACAAGATGAAGAAGAACA+AGG - chr6_3:40455683-40455702 None:intergenic 35.0%
TGTACATGATCCATTGTTGA+TGG + chr6_3:40455783-40455802 Msa0951050:intron 35.0%
TGTTATCAAATCCTGCTTGT+TGG - chr6_3:40455964-40455983 None:intergenic 35.0%
ATATCGTTATATACTCCCTC+TGG + chr6_3:40456160-40456179 Msa0951050:intron 35.0%
GATGCATCTGGTTAAGAATT+TGG + chr6_3:40456219-40456238 Msa0951050:intron 35.0%
ATAGATGTAGTGTGACATTC+GGG + chr6_3:40456395-40456414 Msa0951050:intron 35.0%
GAGTTTCACAATAATCAGAG+CGG - chr6_3:40456659-40456678 None:intergenic 35.0%
TTTGAAAACACCGAGTTCTT+CGG - chr6_3:40456684-40456703 None:intergenic 35.0%
TTCCAATAATGATTCTGCCA+TGG + chr6_3:40456809-40456828 Msa0951050:CDS 35.0%
ATCCATGGCAGAATCATTAT+TGG - chr6_3:40456814-40456833 None:intergenic 35.0%
ATCGTGCAAGAAATGATAAG+AGG + chr6_3:40456959-40456978 Msa0951050:three_prime_UTR 35.0%
TCGTGCAAGAAATGATAAGA+GGG + chr6_3:40456960-40456979 Msa0951050:three_prime_UTR 35.0%
!!! TGTTGATTCGGCTTTTAAGG+GGG - chr6_3:40450011-40450030 None:intergenic 40.0%
CTGAGAAAGAGAATTAGCAG+CGG - chr6_3:40450151-40450170 None:intergenic 40.0%
! CAGAAGCTTTCTTTTCATGC+TGG + chr6_3:40450195-40450214 Msa0951050:CDS 40.0%
GTTAGTGTTTGTGTCATGTC+CGG + chr6_3:40450529-40450548 Msa0951050:intron 40.0%
TACCGAGTTCATGTAAAGCA+CGG - chr6_3:40450558-40450577 None:intergenic 40.0%
TCAAACTCCCACACACATAA+GGG - chr6_3:40450583-40450602 None:intergenic 40.0%
TTCAAACTCCCACACACATA+AGG - chr6_3:40450584-40450603 None:intergenic 40.0%
TTATGTGTGTGGGAGTTTGA+AGG + chr6_3:40450583-40450602 Msa0951050:intron 40.0%
CTCGTTGTATTAGACGTGTA+CGG + chr6_3:40450762-40450781 Msa0951050:intron 40.0%
TTAAACTAACCCACCGAAAG+TGG - chr6_3:40451164-40451183 None:intergenic 40.0%
!! TCAGTATTGGCTATTGAGCT+AGG - chr6_3:40451263-40451282 None:intergenic 40.0%
CGGCGTAACAATTTCAGTAT+TGG - chr6_3:40451276-40451295 None:intergenic 40.0%
ACCTTAAACTCACATCCAAG+CGG - chr6_3:40451339-40451358 None:intergenic 40.0%
GTTTGATTGGCAGTTAAGCT+AGG - chr6_3:40451884-40451903 None:intergenic 40.0%
TTCGTAAGATGTAGCTCAAC+TGG + chr6_3:40452055-40452074 Msa0951050:intron 40.0%
GCTAGTTCAACTAGGTCTTT+CGG - chr6_3:40452401-40452420 None:intergenic 40.0%
CCTTAAAACTCACACAAAGC+AGG - chr6_3:40452480-40452499 None:intergenic 40.0%
! CCTGCTTTGTGTGAGTTTTA+AGG + chr6_3:40452477-40452496 Msa0951050:intron 40.0%
!!! GCTTTGTGTGAGTTTTAAGG+TGG + chr6_3:40452480-40452499 Msa0951050:intron 40.0%
GTTCACCGCTGTAATGTTAT+CGG + chr6_3:40452683-40452702 Msa0951050:intron 40.0%
AATTTCAGTAGTGCCAGTTG+AGG - chr6_3:40452718-40452737 None:intergenic 40.0%
CTGGCACTACTGAAATTGAT+AGG + chr6_3:40452721-40452740 Msa0951050:intron 40.0%
! GATAGGGTAGACATTTTCTG+TGG + chr6_3:40452738-40452757 Msa0951050:intron 40.0%
! GACATTTTCTGTGGTTACTC+GGG + chr6_3:40452747-40452766 Msa0951050:intron 40.0%
AAAAACAACGTGGGAAAAGG+AGG - chr6_3:40452788-40452807 None:intergenic 40.0%
TTATGCATGCTTCTGCTGAT+CGG + chr6_3:40453575-40453594 Msa0951050:intron 40.0%
TAGTGTAAGTACAGCTGCAA+CGG + chr6_3:40453798-40453817 Msa0951050:intron 40.0%
AAAGTACAGCTGCAATTGCA+TGG + chr6_3:40453863-40453882 Msa0951050:intron 40.0%
CACGTCAATTACCATATGGA+AGG - chr6_3:40453956-40453975 None:intergenic 40.0%
CAACCACTTGACAACCAAAA+AGG - chr6_3:40453996-40454015 None:intergenic 40.0%
!! TTTTGGTTGTCAAGTGGTTG+TGG + chr6_3:40453996-40454015 Msa0951050:intron 40.0%
TGAAACATGGAACACAACAC+AGG - chr6_3:40454154-40454173 None:intergenic 40.0%
ATATAGCAAGCGAGAGAGAA+AGG - chr6_3:40454338-40454357 None:intergenic 40.0%
GTAGGATTGTGATCAGTGAT+CGG + chr6_3:40454367-40454386 Msa0951050:intron 40.0%
TAGGATTGTGATCAGTGATC+GGG + chr6_3:40454368-40454387 Msa0951050:intron 40.0%
AAGAAAACATAGTCGACCAG+AGG - chr6_3:40454591-40454610 None:intergenic 40.0%
! GGTAGATTTTCATCGGATGT+AGG - chr6_3:40454665-40454684 None:intergenic 40.0%
ATTGCGATGCAAGTGTAACA+CGG + chr6_3:40454759-40454778 Msa0951050:intron 40.0%
!! GCAAATAGTGTGGTCACTTT+TGG - chr6_3:40455350-40455369 None:intergenic 40.0%
ATGATCACTGCCATCAACAA+TGG - chr6_3:40455796-40455815 None:intergenic 40.0%
CTAGAATTGGTAGAGTTGTG+TGG + chr6_3:40455819-40455838 Msa0951050:intron 40.0%
GAGTTGTGTGGTGTTTCATT+CGG + chr6_3:40455831-40455850 Msa0951050:intron 40.0%
AGTTGTGTGGTGTTTCATTC+GGG + chr6_3:40455832-40455851 Msa0951050:intron 40.0%
! GGTGTTTCATTCGGGATTTT+TGG + chr6_3:40455840-40455859 Msa0951050:intron 40.0%
TCGTCGAAACATCAACTCTT+GGG - chr6_3:40455872-40455891 None:intergenic 40.0%
ACTCTATGCGGTGTTTCATT+TGG + chr6_3:40455896-40455915 Msa0951050:intron 40.0%
CTCTATGCGGTGTTTCATTT+GGG + chr6_3:40455897-40455916 Msa0951050:intron 40.0%
! GGTGTTTCATTTGGGCTTTT+TGG + chr6_3:40455905-40455924 Msa0951050:intron 40.0%
!! TTTTTGGTCAGCCCATTTGT+AGG + chr6_3:40455921-40455940 Msa0951050:intron 40.0%
AGAAAGGGCTACCTACAAAT+GGG - chr6_3:40455935-40455954 None:intergenic 40.0%
AAGAAAGGGCTACCTACAAA+TGG - chr6_3:40455936-40455955 None:intergenic 40.0%
! GCTTGTTGGTGTCTAAGAAA+GGG - chr6_3:40455950-40455969 None:intergenic 40.0%
! TGCTTGTTGGTGTCTAAGAA+AGG - chr6_3:40455951-40455970 None:intergenic 40.0%
TTTCTTAGACACCAACAAGC+AGG + chr6_3:40455950-40455969 Msa0951050:intron 40.0%
GATAAGTATCTACGCACTTG+AGG + chr6_3:40455987-40456006 Msa0951050:intron 40.0%
TTCTTCCATATAGGACCAGA+GGG - chr6_3:40456178-40456197 None:intergenic 40.0%
TTTCTTCCATATAGGACCAG+AGG - chr6_3:40456179-40456198 None:intergenic 40.0%
TCAACAAAAGGTGATGCATC+TGG + chr6_3:40456207-40456226 Msa0951050:intron 40.0%
! TCAGCTTTATCAAATTGGCG+AGG + chr6_3:40456734-40456753 Msa0951050:CDS 40.0%
! CAGCTTTATCAAATTGGCGA+GGG + chr6_3:40456735-40456754 Msa0951050:CDS 40.0%
! TTGCAGTTTTTGCAGAAGAC+AGG - chr6_3:40456888-40456907 None:intergenic 40.0%
CAAGGAATTGTGATGGTTGT+TGG - chr6_3:40456917-40456936 None:intergenic 40.0%
AACCATCACAATTCCTTGTC+TGG + chr6_3:40456919-40456938 Msa0951050:three_prime_UTR 40.0%
ATCCAGACAAGGAATTGTGA+TGG - chr6_3:40456924-40456943 None:intergenic 40.0%
TGCAAGAAATGATAAGAGGG+TGG + chr6_3:40456963-40456982 Msa0951050:three_prime_UTR 40.0%
AAGCAACCCCTGAAATCTAA+AGG - chr6_3:40457091-40457110 None:intergenic 40.0%
GTCCACAGATTCTATCCATA+TGG + chr6_3:40457143-40457162 Msa0951050:three_prime_UTR 40.0%
TGCCATATGGATAGAATCTG+TGG - chr6_3:40457148-40457167 None:intergenic 40.0%
CAATTTACAGTTGTTGACGC+CGG + chr6_3:40457166-40457185 Msa0951050:three_prime_UTR 40.0%
GGGGAGATTATGGAAAGAGA+GGG - chr6_3:40449992-40450011 None:intergenic 45.0%
!! GGCTTTTAAGGGGGAGATTA+TGG - chr6_3:40450002-40450021 None:intergenic 45.0%
CGTTTCTTCGCCATTGGAAT+CGG - chr6_3:40450069-40450088 None:intergenic 45.0%
AGAAAGAGAATTAGCAGCGG+TGG - chr6_3:40450148-40450167 None:intergenic 45.0%
TTCATGTAAAGCACGGACAC+CGG - chr6_3:40450551-40450570 None:intergenic 45.0%
GTCCGTGCTTTACATGAACT+CGG + chr6_3:40450553-40450572 Msa0951050:intron 45.0%
TCGGTATTCCCTTATGTGTG+TGG + chr6_3:40450572-40450591 Msa0951050:intron 45.0%
CGGTATTCCCTTATGTGTGT+GGG + chr6_3:40450573-40450592 Msa0951050:intron 45.0%
TATGCTCCTCTCAATGTCTC+AGG + chr6_3:40451128-40451147 Msa0951050:intron 45.0%
GGAATCCCGAAACTCAAATC+CGG - chr6_3:40451317-40451336 None:intergenic 45.0%
CCTTAAACTCACATCCAAGC+GGG - chr6_3:40451338-40451357 None:intergenic 45.0%
GCTTGGATGTGAGTTTAAGG+TGG + chr6_3:40451338-40451357 Msa0951050:intron 45.0%
TATAGTGGCGCCATACAGTA+TGG + chr6_3:40451531-40451550 Msa0951050:intron 45.0%
GATAGCAGAGCCATACTGTA+TGG - chr6_3:40451544-40451563 None:intergenic 45.0%
CTGCTACGTTGTAGCAGTAT+GGG - chr6_3:40451651-40451670 None:intergenic 45.0%
! TTGTCAGATAGCGGCTATAG+TGG + chr6_3:40451706-40451725 Msa0951050:intron 45.0%
ACGGAACTTCGGTAGTTACT+CGG + chr6_3:40452438-40452457 Msa0951050:intron 45.0%
CTCATGTTGTAGGGAAGAGA+TGG + chr6_3:40452891-40452910 Msa0951050:intron 45.0%
ATGTTGTAGGGAAGAGATGG+TGG + chr6_3:40452894-40452913 Msa0951050:intron 45.0%
TGTTGTAGGGAAGAGATGGT+GGG + chr6_3:40452895-40452914 Msa0951050:intron 45.0%
!! ATAAAGTACCGGCTCTGTAG+CGG + chr6_3:40452978-40452997 Msa0951050:intron 45.0%
! TTGTCAGATAGCGGCTATAG+TGG + chr6_3:40451706-40451725 Msa0951050:intron 45.0%
ATGAAGCAGCTTCGTAAAGC+TGG + chr6_3:40453756-40453775 Msa0951050:intron 45.0%
!! ATGGGATGGTTTGCCCTTTT+TGG + chr6_3:40453979-40453998 Msa0951050:intron 45.0%
!!! TGCCCTTTTTGGTTGTCAAG+TGG + chr6_3:40453990-40454009 Msa0951050:intron 45.0%
CGACCCAACCTGAAAAAACT+AGG + chr6_3:40454396-40454415 Msa0951050:intron 45.0%
!!! GGCCTAAGCCTAGTTTTTTC+AGG - chr6_3:40454407-40454426 None:intergenic 45.0%
GAACAGAGGTGAGAAACAAG+AGG - chr6_3:40454470-40454489 None:intergenic 45.0%
!!! ATAGTGTGGTCACTTTTGGC+AGG - chr6_3:40455346-40455365 None:intergenic 45.0%
ATCACAGTCACCATTGCCAA+TGG - chr6_3:40455409-40455428 None:intergenic 45.0%
TGGAACATACTCCTAGGATG+CGG - chr6_3:40455568-40455587 None:intergenic 45.0%
GAGACATGCTTGTGGGATAT+TGG + chr6_3:40455754-40455773 Msa0951050:intron 45.0%
GTCGAAACATCAACTCTTGG+GGG - chr6_3:40455870-40455889 None:intergenic 45.0%
CGTCGAAACATCAACTCTTG+GGG - chr6_3:40455871-40455890 None:intergenic 45.0%
GTCGTCGAAACATCAACTCT+TGG - chr6_3:40455873-40455892 None:intergenic 45.0%
ATACTCCCTCTGGTCCTATA+TGG + chr6_3:40456170-40456189 Msa0951050:intron 45.0%
TGAAACTCAGCCGAAGAACT+CGG + chr6_3:40456671-40456690 Msa0951050:CDS 45.0%
GCTGAAGATTTCGACGAACA+GGG - chr6_3:40456719-40456738 None:intergenic 45.0%
AGCTGAAGATTTCGACGAAC+AGG - chr6_3:40456720-40456739 None:intergenic 45.0%
CTTTATCAAATTGGCGAGGG+TGG + chr6_3:40456738-40456757 Msa0951050:CDS 45.0%
CTAGTCTGCATGCATATCCA+TGG - chr6_3:40456829-40456848 None:intergenic 45.0%
! CATGCAGACTAGTCCTCTAT+TGG + chr6_3:40456837-40456856 Msa0951050:exon 45.0%
AAGACTCCAAACCAATCGCT+CGG - chr6_3:40457027-40457046 None:intergenic 45.0%
!! AAAAAAAAAAAAAATACAAA+AGG - chr6_3:40455174-40455193 None:intergenic 5.0%
!!! AATAATTTCTTTTAAAAATT+TGG - chr6_3:40455588-40455607 None:intergenic 5.0%
GGGGGAGATTATGGAAAGAG+AGG - chr6_3:40449993-40450012 None:intergenic 50.0%
TTCTTCGCCATTGGAATCGG+CGG - chr6_3:40450066-40450085 None:intergenic 50.0%
GACTTGCGTTTCTTCGCCAT+TGG - chr6_3:40450075-40450094 None:intergenic 50.0%
CAAGTCTCGACGAAGTCGAT+CGG + chr6_3:40450103-40450122 Msa0951050:CDS 50.0%
! GGTGGAGAAGGAAGCATACA+TGG - chr6_3:40450130-40450149 None:intergenic 50.0%
AGAATTAGCAGCGGTGGAGA+AGG - chr6_3:40450142-40450161 None:intergenic 50.0%
TGTGTGTGGGAGTTTGAAGG+TGG + chr6_3:40450586-40450605 Msa0951050:intron 50.0%
TCTCAATGTCTCAGGTTCCC+CGG + chr6_3:40451136-40451155 Msa0951050:intron 50.0%
CCCGCTTGGATGTGAGTTTA+AGG + chr6_3:40451335-40451354 Msa0951050:intron 50.0%
GCTGCTACGTTGTAGCAGTA+TGG - chr6_3:40451652-40451671 None:intergenic 50.0%
GGTTACTCGGGTTTGAACTC+AGG + chr6_3:40452113-40452132 Msa0951050:intron 50.0%
CGGAACTTCGGTAGTTACTC+GGG + chr6_3:40452439-40452458 Msa0951050:intron 50.0%
AGTTACTCGGGTCGCATTTC+AGG + chr6_3:40452451-40452470 Msa0951050:intron 50.0%
TCGGTAAGACCTACCTCAAC+TGG + chr6_3:40452702-40452721 Msa0951050:intron 50.0%
TCAGTAGTGCCAGTTGAGGT+AGG - chr6_3:40452714-40452733 None:intergenic 50.0%
GGTTACTCGGGTTTGAACTC+AGG + chr6_3:40452113-40452132 Msa0951050:intron 50.0%
TCGAAATTCCGCTACAGAGC+CGG - chr6_3:40452989-40453008 None:intergenic 50.0%
AACAAGAAGAAGGAGGGTCG+AGG + chr6_3:40453486-40453505 Msa0951050:CDS 50.0%
ACAAGAAGAAGGAGGGTCGA+GGG + chr6_3:40453487-40453506 Msa0951050:CDS 50.0%
ATGCTTCTGCTGATCGGAAG+TGG + chr6_3:40453581-40453600 Msa0951050:intron 50.0%
TGCTTCTGCTGATCGGAAGT+GGG + chr6_3:40453582-40453601 Msa0951050:intron 50.0%
GACTGATACAGCCACGAAAG+TGG + chr6_3:40453921-40453940 Msa0951050:intron 50.0%
TACAGCCACGAAAGTGGTTG+TGG + chr6_3:40453927-40453946 Msa0951050:intron 50.0%
CCATCTCAAGCCCACAAGAA+AGG - chr6_3:40454266-40454285 None:intergenic 50.0%
CCTTTCTTGTGGGCTTGAGA+TGG + chr6_3:40454263-40454282 Msa0951050:intron 50.0%
AGATGGTACGAATTGCGCGA+GGG + chr6_3:40454280-40454299 Msa0951050:intron 50.0%
TTTCTCCGGAGACCATCTTC+TGG + chr6_3:40454532-40454551 Msa0951050:intron 50.0%
AGTTGCCAGAAGATGGTCTC+CGG - chr6_3:40454540-40454559 None:intergenic 50.0%
CGGAGAAAGTTGCCAGAAGA+TGG - chr6_3:40454547-40454566 None:intergenic 50.0%
TGACCGTTAGCTATCTCACG+TGG + chr6_3:40455025-40455044 Msa0951050:intron 50.0%
CCACCACGTGAGATAGCTAA+CGG - chr6_3:40455031-40455050 None:intergenic 50.0%
TTAAACGGCGGTTGTTTGGC+TGG + chr6_3:40455377-40455396 Msa0951050:intron 50.0%
GTTTGGCTGGCATCTTCCAT+TGG + chr6_3:40455390-40455409 Msa0951050:intron 50.0%
CTGGCATCTTCCATTGGCAA+TGG + chr6_3:40455396-40455415 Msa0951050:intron 50.0%
TACCCATTGATCCGCATCCT+AGG + chr6_3:40455554-40455573 Msa0951050:intron 50.0%
CTCCTAGGATGCGGATCAAT+GGG - chr6_3:40455559-40455578 None:intergenic 50.0%
ACTCCTAGGATGCGGATCAA+TGG - chr6_3:40455560-40455579 None:intergenic 50.0%
TTCGACGACTGCACTCTATG+CGG + chr6_3:40455884-40455903 Msa0951050:intron 50.0%
! GTGACAGGCATCATTGGTTG+TGG - chr6_3:40456570-40456589 None:intergenic 50.0%
GAACTGGTGACAGGCATCAT+TGG - chr6_3:40456576-40456595 None:intergenic 50.0%
ATGATGCCTGTCACCAGTTC+AGG + chr6_3:40456576-40456595 Msa0951050:CDS 50.0%
AGTGACTGGAAAGCCTGAAC+TGG - chr6_3:40456592-40456611 None:intergenic 50.0%
TCAGGCTTTCCAGTCACTTC+AGG + chr6_3:40456594-40456613 Msa0951050:CDS 50.0%
CCAGAAGATCCTGAAGTGAC+TGG - chr6_3:40456606-40456625 None:intergenic 50.0%
CCAGTCACTTCAGGATCTTC+TGG + chr6_3:40456603-40456622 Msa0951050:CDS 50.0%
TCTTCTGGCCAAACGATAGC+TGG + chr6_3:40456618-40456637 Msa0951050:CDS 50.0%
CTTCTGGCCAAACGATAGCT+GGG + chr6_3:40456619-40456638 Msa0951050:CDS 50.0%
TTCTGGCCAAACGATAGCTG+GGG + chr6_3:40456620-40456639 Msa0951050:CDS 50.0%
AGAGCAAGCGAATCCAGACA+AGG - chr6_3:40456935-40456954 None:intergenic 50.0%
GTCTGGATTCGCTTGCTCTT+TGG + chr6_3:40456936-40456955 Msa0951050:three_prime_UTR 50.0%
!! GGTGGTGGATGGAGGAATGA+GGG - chr6_3:40450038-40450057 None:intergenic 55.0%
CCATTGGAATCGGCGGAGAT+CGG - chr6_3:40450059-40450078 None:intergenic 55.0%
GACTTCGTCGAGACTTGACG+CGG - chr6_3:40450100-40450119 None:intergenic 55.0%
GGGGAACCTGAGACATTGAG+AGG - chr6_3:40451137-40451156 None:intergenic 55.0%
TAACCCACCGAAAGTGGCAC+CGG - chr6_3:40451158-40451177 None:intergenic 55.0%
TGAGTTTCGGGATTCCCGCT+TGG + chr6_3:40451321-40451340 Msa0951050:intron 55.0%
GCTTCTGCTGATCGGAAGTG+GGG + chr6_3:40453583-40453602 Msa0951050:intron 55.0%
CTTCTGCTGATCGGAAGTGG+GGG + chr6_3:40453584-40453603 Msa0951050:intron 55.0%
GGTTGTGGACGCCTTCCATA+TGG + chr6_3:40453942-40453961 Msa0951050:intron 55.0%
GAGATGGTACGAATTGCGCG+AGG + chr6_3:40454279-40454298 Msa0951050:intron 55.0%
CTCCGTTGAGTGTCCTCTGA+TGG + chr6_3:40454562-40454581 Msa0951050:intron 55.0%
CGCCATCAGAGGACACTCAA+CGG - chr6_3:40454567-40454586 None:intergenic 55.0%
CCGTTAGCTATCTCACGTGG+TGG + chr6_3:40455028-40455047 Msa0951050:intron 55.0%
!! TGGTTTTGCGGTGGTGCTCT+GGG - chr6_3:40456543-40456562 None:intergenic 55.0%
!!! GGTTGTGGCTGCTGGTTTTG+CGG - chr6_3:40456555-40456574 None:intergenic 55.0%
! GCATCATTGGTTGTGGCTGC+TGG - chr6_3:40456563-40456582 None:intergenic 55.0%
GGAAAGCCTGAACTGGTGAC+AGG - chr6_3:40456585-40456604 None:intergenic 55.0%
!! CGGTGGTGGATGGAGGAATG+AGG - chr6_3:40450039-40450058 None:intergenic 60.0%
TTGGAATCGGCGGAGATCGG+TGG - chr6_3:40450056-40450075 None:intergenic 60.0%
!! CCGATCTCCGCCGATTCCAA+TGG + chr6_3:40450056-40450075 Msa0951050:exon 60.0%
TTCGTCGAGACTTGACGCGG+CGG - chr6_3:40450097-40450116 None:intergenic 60.0%
!! AGGTTCCCCGGTGCCACTTT+CGG + chr6_3:40451148-40451167 Msa0951050:intron 60.0%
AACCCACCGAAAGTGGCACC+GGG - chr6_3:40451157-40451176 None:intergenic 60.0%
GGCGTCCACAACCACTTTCG+TGG - chr6_3:40453935-40453954 None:intergenic 60.0%
GTACGAATTGCGCGAGGGAC+TGG + chr6_3:40454285-40454304 Msa0951050:intron 60.0%
! TGTCCTCTGATGGCGTCCTC+TGG + chr6_3:40454572-40454591 Msa0951050:intron 60.0%
! GGTGCTCTGGGTGACATGGA+TGG - chr6_3:40456531-40456550 None:intergenic 60.0%
!!! CTGGTTTTGCGGTGGTGCTC+TGG - chr6_3:40456544-40456563 None:intergenic 60.0%
!!! TGTGGCTGCTGGTTTTGCGG+TGG - chr6_3:40456552-40456571 None:intergenic 60.0%
ATCAGAGCGGAGTCCTTGCC+CGG - chr6_3:40456646-40456665 None:intergenic 60.0%
GCTTACGTCGACCGAGCGAT+TGG + chr6_3:40457013-40457032 Msa0951050:three_prime_UTR 60.0%
! CGTCGACCGAGCGATTGGTT+TGG + chr6_3:40457018-40457037 Msa0951050:three_prime_UTR 60.0%
!! CGGAGATCGGTGGTGGATGG+AGG - chr6_3:40450046-40450065 None:intergenic 65.0%
GAATCGGCGGAGATCGGTGG+TGG - chr6_3:40450053-40450072 None:intergenic 65.0%
!! TTCCCCGGTGCCACTTTCGG+TGG + chr6_3:40451151-40451170 Msa0951050:intron 65.0%
!! TCCCCGGTGCCACTTTCGGT+GGG + chr6_3:40451152-40451171 Msa0951050:intron 65.0%
ACCCACCGAAAGTGGCACCG+GGG - chr6_3:40451156-40451175 None:intergenic 65.0%
CGACCAGAGGACGCCATCAG+AGG - chr6_3:40454578-40454597 None:intergenic 65.0%
! CGGTGGTGCTCTGGGTGACA+TGG - chr6_3:40456535-40456554 None:intergenic 65.0%
GGCCAAACGATAGCTGGGGC+CGG + chr6_3:40456624-40456643 Msa0951050:CDS 65.0%
GCCAAACGATAGCTGGGGCC+GGG + chr6_3:40456625-40456644 Msa0951050:CDS 65.0%
!! CGGCGGAGATCGGTGGTGGA+TGG - chr6_3:40450049-40450068 None:intergenic 70.0%
GCCCGGCCCCAGCTATCGTT+TGG - chr6_3:40456629-40456648 None:intergenic 70.0%
ACGATAGCTGGGGCCGGGCA+AGG + chr6_3:40456630-40456649 Msa0951050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 40449985 40457362 40449985 ID=Msa0951050;Name=Msa0951050
chr6_3 mRNA 40449985 40457362 40449985 ID=Msa0951050-mRNA-1;Parent=Msa0951050;Name=Msa0951050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=90|1|1|1|1|1|3|514|195
chr6_3 exon 40449985 40450233 40449985 ID=Msa0951050-mRNA-1:exon:9698;Parent=Msa0951050-mRNA-1
chr6_3 exon 40453461 40453541 40453461 ID=Msa0951050-mRNA-1:exon:9699;Parent=Msa0951050-mRNA-1
chr6_3 exon 40456501 40457362 40456501 ID=Msa0951050-mRNA-1:exon:9700;Parent=Msa0951050-mRNA-1
chr6_3 five_prime_UTR 40449985 40450074 40449985 ID=Msa0951050-mRNA-1:five_prime_utr;Parent=Msa0951050-mRNA-1
chr6_3 CDS 40450075 40450233 40450075 ID=Msa0951050-mRNA-1:cds;Parent=Msa0951050-mRNA-1
chr6_3 CDS 40453461 40453541 40453461 ID=Msa0951050-mRNA-1:cds;Parent=Msa0951050-mRNA-1
chr6_3 CDS 40456501 40456848 40456501 ID=Msa0951050-mRNA-1:cds;Parent=Msa0951050-mRNA-1
chr6_3 three_prime_UTR 40456849 40457362 40456849 ID=Msa0951050-mRNA-1:three_prime_utr;Parent=Msa0951050-mRNA-1
Gene Sequence

>Msa0951050

ATGGCGAAGAAACGCAAGTCCGCCGCGTCAAGTCTCGACGAAGTCGATCGGACCATGTATGCTTCCTTCTCCACCGCTGCTAATTCTCTTTCTCAGCTTTACTCTCATGCCATGAATCATCAGAAGCTTTCTTTTCATGCTGGTGAACGTAACGCTCTTGAAAAACTTTATCAGTGGATTTGGAAACAAGAAGAAGGAGGGTCGAGGGTTGCAACAGTTGATGTAGTTAACTACATTCAGAATGAGTTAGATTATTGTGGAGAAGAGCCATCCATGTCACCCAGAGCACCACCGCAAAACCAGCAGCCACAACCAATGATGCCTGTCACCAGTTCAGGCTTTCCAGTCACTTCAGGATCTTCTGGCCAAACGATAGCTGGGGCCGGGCAAGGACTCCGCTCTGATTATTGTGAAACTCAGCCGAAGAACTCGGTGTTTTCAAATGCATTATCAAGCCCTGTTCGTCGAAATCTTCAGCTTTATCAAATTGGCGAGGGTGGAAATCGTAGCTTTCTGCACAATCAAAGCAGCGAATCAAATGCAGTTAGTTCCAATAATGATTCTGCCATGGATATGCATGCAGACTAG
Protein sequence

>Msa0951050

MAKKRKSAASSLDEVDRTMYASFSTAANSLSQLYSHAMNHQKLSFHAGERNALEKLYQWIWKQEEGGSRVATVDVVNYIQNELDYCGEEPSMSPRAPPQNQQPQPMMPVTSSGFPVTSGSSGQTIAGAGQGLRSDYCETQPKNSVFSNALSSPVRRNLQLYQIGEGGNRSFLHNQSSESNAVSSNNDSAMDMHAD*