AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTGCTTATCATGATTT+TGG 0.160053 5_4:-6763406 None:intergenic
TCCAATTCTTCCATAGTTTC+TGG 0.164945 5_4:-6762620 None:intergenic
CAACCATGACTTACTAATTT+TGG 0.169811 5_4:-6762543 None:intergenic
TGGATGTTCAATTAATTTAT+TGG 0.196351 5_4:-6762486 None:intergenic
TAATTGTTTAATAAGTTTAT+TGG 0.212114 5_4:+6763216 Msa0833670:three_prime_UTR
CATGATAAGGCAGCGATTTA+AGG 0.214236 5_4:-6762766 None:intergenic
CTTACAAAAGGCACGGAAAT+TGG 0.230251 5_4:+6762943 Msa0833670:three_prime_UTR
AGCTTGTCTTAGGGCCTGTT+TGG 0.288788 5_4:-6763453 None:intergenic
ATTGGCAAACAATTTGTCTA+TGG 0.294301 5_4:-6762468 None:intergenic
ATGAGGCCTGAGTTATTTAC+AGG 0.309434 5_4:+6763304 Msa0833670:three_prime_UTR
TTCTTCAACGGAAGTGGATT+GGG 0.319925 5_4:-6761060 None:intergenic
TCCAGAAACTATGGAAGAAT+TGG 0.324623 5_4:+6762619 Msa0833670:three_prime_UTR
AAGGCTTGCACGAGGGGTGC+TGG 0.344303 5_4:+6763069 Msa0833670:three_prime_UTR
CTCTTCTTGCATCGTCGATC+CGG 0.348391 5_4:-6762583 None:intergenic
CCTGCCAGCTGTGCCTGCTC+AGG 0.364956 5_4:+6763000 Msa0833670:three_prime_UTR
TTTAGCTGTTTCAACATTCA+AGG 0.375145 5_4:-6762384 None:intergenic
GGCACAGCTGGCAGGAGCAC+TGG 0.386005 5_4:-6762992 None:intergenic
GTCTTAGGGCCTGTTTGGAT+TGG 0.391712 5_4:-6763448 None:intergenic
TTCAACTCAAGTGGACTTCA+TGG 0.391784 5_4:+6763116 Msa0833670:three_prime_UTR
CTTGGCGTTAATCAACCCTT+GGG 0.392019 5_4:+6763168 Msa0833670:three_prime_UTR
TGTGCCTGCTCAGGTTCTCT+TGG 0.392759 5_4:+6763009 Msa0833670:three_prime_UTR
CATAGTAGATACCGTGTTCT+CGG 0.411266 5_4:-6762651 None:intergenic
TTTAACGATTAGCCCATGTT+TGG 0.415198 5_4:-6762834 None:intergenic
AGCACCCCTCGTGCAAGCCT+TGG 0.419292 5_4:-6763067 None:intergenic
GATCATGCAGCCTCACATAT+TGG 0.419523 5_4:+6762719 Msa0833670:three_prime_UTR
CCTTGGCGTTAATCAACCCT+TGG 0.423068 5_4:+6763167 Msa0833670:three_prime_UTR
ACATGGGCTAATCGTTAAAC+AGG 0.424852 5_4:+6762838 Msa0833670:three_prime_UTR
AAGGCGCATAAGGCCAATCC+TGG 0.426108 5_4:-6762429 None:intergenic
CTTCTTCAACGGAAGTGGAT+TGG 0.429621 5_4:-6761061 None:intergenic
AATGCAGCTTTCCGCATAGA+TGG 0.432684 5_4:-6762350 None:intergenic
CACCGACATTCCAGAAACTA+TGG 0.432903 5_4:+6762610 Msa0833670:three_prime_UTR
TGCTGGGAATACCACCTTTG+TGG 0.435864 5_4:+6763086 Msa0833670:three_prime_UTR
CCTGAGCAGGCACAGCTGGC+AGG 0.442970 5_4:-6763000 None:intergenic
AGAACCTGAGCAGGCACAGC+TGG 0.443395 5_4:-6763004 None:intergenic
TGTTTGGATGCTATTGCCCT+TGG 0.447361 5_4:-6762818 None:intergenic
TCGCACTTGTTGTACGCAAT+GGG 0.447959 5_4:-6762285 None:intergenic
GCAAATAAACCAATCCAAAC+AGG 0.452043 5_4:+6763439 Msa0833670:three_prime_UTR
GTAGGCTTCTTCAACGGAAG+TGG 0.454599 5_4:-6761066 None:intergenic
GTTCTGCATCTAGTAACTTA+AGG 0.460780 5_4:+6762252 Msa0833670:three_prime_UTR
CAAAAGGCACGGAAATTGGC+TGG 0.465990 5_4:+6762947 Msa0833670:three_prime_UTR
TCTTCTTGCATCGTCGATCC+GGG 0.467160 5_4:-6762582 None:intergenic
TCTCTTGGATTCCCTACGCC+GGG 0.469407 5_4:+6763024 Msa0833670:three_prime_UTR
GCCACCACACAAGGCGCATA+AGG 0.473025 5_4:-6762439 None:intergenic
TCTCTGCAATCACACTTGAC+AGG 0.474712 5_4:-6762520 None:intergenic
AGGCTTGCACGAGGGGTGCT+GGG 0.476721 5_4:+6763070 Msa0833670:three_prime_UTR
CTAAACTAGTTTAGTTACCT+TGG 0.479176 5_4:+6763150 Msa0833670:three_prime_UTR
CTTGACAGGGCCAGCGCTGT+TGG 0.479492 5_4:-6762506 None:intergenic
ATCAAATTGCACCCGGCGTA+GGG 0.494435 5_4:-6763035 None:intergenic
GTTGCTTCAGATCCCAGGAT+TGG 0.495782 5_4:+6762416 Msa0833670:three_prime_UTR
TTCGCACTTGTTGTACGCAA+TGG 0.499355 5_4:-6762286 None:intergenic
CGGTTGTGACCAGCATGATA+AGG 0.504331 5_4:-6762779 None:intergenic
TTCTCTTGGATTCCCTACGC+CGG 0.506279 5_4:+6763023 Msa0833670:three_prime_UTR
TGGATGTTGCTTCAGATCCC+AGG 0.510117 5_4:+6762411 Msa0833670:three_prime_UTR
TTCCATAGTTTCTGGAATGT+CGG 0.513075 5_4:-6762612 None:intergenic
CGCAAGGATTTAATGAGTGG+TGG 0.516421 5_4:+6762230 Msa0833670:three_prime_UTR
TGTTGGCCTGTAAATAACTC+AGG 0.518520 5_4:-6763310 None:intergenic
GGAAGGTCAAGGAGAGAGAT+GGG 0.518846 5_4:+6762859 Msa0833670:three_prime_UTR
AAGCCTACTGTATGTTAGAT+CGG 0.520343 5_4:+6761081 Msa0833670:CDS
AAATCGCTGCCTTATCATGC+TGG 0.522737 5_4:+6762770 Msa0833670:three_prime_UTR
TGATCCAAGGCTTGCACGAG+GGG 0.526320 5_4:+6763063 Msa0833670:three_prime_UTR
AGCCAATGCACACTTACAAA+AGG 0.527197 5_4:+6762931 Msa0833670:three_prime_UTR
AGGAAGGTCAAGGAGAGAGA+TGG 0.527843 5_4:+6762858 Msa0833670:three_prime_UTR
TATGCGCCTTGTGTGGTGGC+AGG 0.528538 5_4:+6762442 Msa0833670:three_prime_UTR
AGATCGGAAACAAGTTGGAT+TGG 0.529168 5_4:+6761097 Msa0833670:CDS
TGGCTTCCTGCCACCACACA+AGG 0.536207 5_4:-6762448 None:intergenic
ATGTTAGATCGGAAACAAGT+TGG 0.537118 5_4:+6761092 Msa0833670:CDS
GCACTCAACTCAACTTCAGC+CGG 0.547160 5_4:+6761125 Msa0833670:CDS
CATCAAATTGCACCCGGCGT+AGG 0.548272 5_4:-6763036 None:intergenic
TTTCCGATCTAACATACAGT+AGG 0.549642 5_4:-6761084 None:intergenic
GGCTGGGAGTGTGCCTGCTG+AGG 0.550043 5_4:+6762964 Msa0833670:three_prime_UTR
AGGGCAATAGCATCCAAACA+TGG 0.560245 5_4:+6762821 Msa0833670:three_prime_UTR
AGCACTGGAATAGCCTCAGC+AGG 0.562374 5_4:-6762977 None:intergenic
TGAAACGATCTGTTGAAGCC+CGG 0.564950 5_4:+6762564 Msa0833670:three_prime_UTR
GAATCCAAGAGAACCTGAGC+AGG 0.565134 5_4:-6763013 None:intergenic
CGAAGTCATCAACATCATCC+AGG 0.569800 5_4:+6761177 Msa0833670:CDS
AATTTGATGTGTTTGATCCA+AGG 0.570713 5_4:+6763050 Msa0833670:three_prime_UTR
GTGTGAGGCAGTTTATGAAA+TGG 0.571413 5_4:+6762901 Msa0833670:three_prime_UTR
CTCTGCAATCACACTTGACA+GGG 0.573273 5_4:-6762519 None:intergenic
AGACCAAAATTAGTAAGTCA+TGG 0.574427 5_4:+6762540 Msa0833670:three_prime_UTR
TGACGGCCGACGAGCAACTC+CGG 0.577905 5_4:-6761144 None:intergenic
AGGTCAAGGAGAGAGATGGG+TGG 0.579175 5_4:+6762862 Msa0833670:three_prime_UTR
CATCTGTAGGCATTAACGCA+AGG 0.580140 5_4:+6762214 Msa0833670:intron
AGAATCTAGTTACTGTTACA+TGG 0.581932 5_4:-6763240 None:intergenic
CTGTTTCAACATTCAAGGCA+CGG 0.582336 5_4:-6762379 None:intergenic
AATTGAACATCCAACAGCGC+TGG 0.586583 5_4:+6762496 Msa0833670:three_prime_UTR
GCCTTATGCGCCTTGTGTGG+TGG 0.587629 5_4:+6762438 Msa0833670:three_prime_UTR
ATCGTTAAACAGGAAGGTCA+AGG 0.590180 5_4:+6762848 Msa0833670:three_prime_UTR
TAACGCAAGGATTTAATGAG+TGG 0.593914 5_4:+6762227 Msa0833670:exon
AAGTCCACTTGAGTTGAAGC+TGG 0.593973 5_4:-6763111 None:intergenic
TCAAGTGGACTTCATGGAGA+AGG 0.595439 5_4:+6763122 Msa0833670:three_prime_UTR
TTCTCGCGAGGGTCTGTGTG+AGG 0.600535 5_4:+6762886 Msa0833670:three_prime_UTR
CATACAGTAGGCTTCTTCAA+CGG 0.601152 5_4:-6761072 None:intergenic
AAAAGGCACGGAAATTGGCT+GGG 0.603375 5_4:+6762948 Msa0833670:three_prime_UTR
TCACATATTGGCAAGGCTAG+TGG 0.604755 5_4:+6762731 Msa0833670:three_prime_UTR
CAAACACATCAAATTGCACC+CGG 0.606483 5_4:-6763042 None:intergenic
GGTACCAGCTTCAACTCAAG+TGG 0.609461 5_4:+6763107 Msa0833670:three_prime_UTR
TTTGATCCAAGGCTTGCACG+AGG 0.609726 5_4:+6763061 Msa0833670:three_prime_UTR
CCAAGGGTTGATTAACGCCA+AGG 0.610632 5_4:-6763167 None:intergenic
CATAGTTTCTGGAATGTCGG+TGG 0.610747 5_4:-6762609 None:intergenic
CTTCAGCCGGAGTTGCTCGT+CGG 0.612012 5_4:+6761138 Msa0833670:CDS
GACTTCGTCAGTGTTTCTGA+CGG 0.616849 5_4:-6761161 None:intergenic
AGGCGCATAAGGCCAATCCT+GGG 0.619021 5_4:-6762428 None:intergenic
TGCAGCCTCACATATTGGCA+AGG 0.620209 5_4:+6762724 Msa0833670:three_prime_UTR
AGATGGGTGGATTCTCGCGA+GGG 0.621395 5_4:+6762875 Msa0833670:three_prime_UTR
TGGCGTTAATCAACCCTTGG+GGG 0.621962 5_4:+6763170 Msa0833670:three_prime_UTR
TTGTACTTGACACTTCAAGC+TGG 0.625478 5_4:+6762674 Msa0833670:three_prime_UTR
TTGATCCAAGGCTTGCACGA+GGG 0.629176 5_4:+6763062 Msa0833670:three_prime_UTR
TACTTGACACTTCAAGCTGG+CGG 0.631640 5_4:+6762677 Msa0833670:three_prime_UTR
GGGCAATAGCATCCAAACAT+GGG 0.631843 5_4:+6762822 Msa0833670:three_prime_UTR
ATGCACACTTACAAAAGGCA+CGG 0.641522 5_4:+6762936 Msa0833670:three_prime_UTR
TGTTGAAACAGCTAAAGCGA+TGG 0.649208 5_4:+6762391 Msa0833670:three_prime_UTR
GATCGACGATGCAAGAAGAG+AGG 0.649326 5_4:+6762586 Msa0833670:three_prime_UTR
TAGATGGAGGTAATTCGAGA+AGG 0.649396 5_4:-6762334 None:intergenic
GGGCTAATCGTTAAACAGGA+AGG 0.649412 5_4:+6762842 Msa0833670:three_prime_UTR
GGAGAAATATGCCGAGAACA+CGG 0.651307 5_4:+6762640 Msa0833670:three_prime_UTR
TTGGCGTTAATCAACCCTTG+GGG 0.651882 5_4:+6763169 Msa0833670:three_prime_UTR
CGAGAAGGCAGAGATAGTGA+TGG 0.655909 5_4:-6762319 None:intergenic
GAGATGGGTGGATTCTCGCG+AGG 0.657859 5_4:+6762874 Msa0833670:three_prime_UTR
GCAGCTTTCCGCATAGATGG+AGG 0.659881 5_4:-6762347 None:intergenic
TTGGCCTTATGCGCCTTGTG+TGG 0.661315 5_4:+6762435 Msa0833670:three_prime_UTR
GGCTGAAGTTGAGTTGAGTG+CGG 0.665617 5_4:-6761123 None:intergenic
ACTAGCCTTGCCAATATGTG+AGG 0.668625 5_4:-6762729 None:intergenic
TGAAGCTGGTACCACAAAGG+TGG 0.671108 5_4:-6763097 None:intergenic
AGTTGAAGCTGGTACCACAA+AGG 0.678191 5_4:-6763100 None:intergenic
TCGAATTACCTCCATCTATG+CGG 0.683768 5_4:+6762339 Msa0833670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTTTTAAAATATA+TGG + chr5_4:6762167-6762186 Msa0833670:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr5_4:6762171-6762190 Msa0833670:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr5_4:6762172-6762191 Msa0833670:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr5_4:6763216-6763235 Msa0833670:three_prime_UTR 10.0%
!!! CAACTTTTTTTTAAAATATA+TGG + chr5_4:6762167-6762186 Msa0833670:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr5_4:6762171-6762190 Msa0833670:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr5_4:6762172-6762191 Msa0833670:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr5_4:6763216-6763235 Msa0833670:three_prime_UTR 10.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr5_4:6761706-6761725 Msa0833670:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr5_4:6761811-6761830 Msa0833670:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr5_4:6761987-6762006 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr5_4:6762023-6762042 Msa0833670:intron 15.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr5_4:6761706-6761725 Msa0833670:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr5_4:6761811-6761830 Msa0833670:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr5_4:6761987-6762006 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr5_4:6762023-6762042 Msa0833670:intron 15.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr5_4:6761198-6761217 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr5_4:6761394-6761413 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr5_4:6761504-6761523 Msa0833670:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr5_4:6761511-6761530 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr5_4:6761948-6761967 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr5_4:6762489-6762508 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr5_4:6763287-6763306 Msa0833670:three_prime_UTR 20.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr5_4:6761198-6761217 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr5_4:6761394-6761413 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr5_4:6761504-6761523 Msa0833670:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr5_4:6761511-6761530 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr5_4:6761948-6761967 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr5_4:6762489-6762508 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr5_4:6763287-6763306 Msa0833670:three_prime_UTR 20.0%
! AGCTTCTAATATATGCTAAA+GGG - chr5_4:6761483-6761502 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr5_4:6761484-6761503 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr5_4:6761512-6761531 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr5_4:6761510-6761529 Msa0833670:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr5_4:6761949-6761968 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr5_4:6762080-6762099 Msa0833670:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr5_4:6762802-6762821 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr5_4:6762802-6762821 Msa0833670:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr5_4:6763330-6763349 None:intergenic 25.0%
! AGCTTCTAATATATGCTAAA+GGG - chr5_4:6761483-6761502 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr5_4:6761484-6761503 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr5_4:6761512-6761531 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr5_4:6761510-6761529 Msa0833670:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr5_4:6761949-6761968 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr5_4:6762080-6762099 Msa0833670:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr5_4:6762802-6762821 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr5_4:6762802-6762821 Msa0833670:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr5_4:6763330-6763349 None:intergenic 25.0%
! AAACAACTGTCTTGCATTTT+CGG + chr5_4:6761651-6761670 Msa0833670:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr5_4:6761721-6761740 Msa0833670:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr5_4:6761722-6761741 Msa0833670:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr5_4:6761755-6761774 Msa0833670:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr5_4:6762144-6762163 Msa0833670:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr5_4:6762201-6762220 Msa0833670:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr5_4:6762387-6762406 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr5_4:6762471-6762490 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr5_4:6762540-6762559 Msa0833670:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr5_4:6762546-6762565 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr5_4:6762801-6762820 Msa0833670:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr5_4:6763050-6763069 Msa0833670:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr5_4:6763150-6763169 Msa0833670:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr5_4:6763243-6763262 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr5_4:6763409-6763428 None:intergenic 30.0%
! AAACAACTGTCTTGCATTTT+CGG + chr5_4:6761651-6761670 Msa0833670:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr5_4:6761721-6761740 Msa0833670:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr5_4:6761722-6761741 Msa0833670:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr5_4:6761755-6761774 Msa0833670:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr5_4:6762144-6762163 Msa0833670:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr5_4:6762201-6762220 Msa0833670:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr5_4:6762387-6762406 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr5_4:6762471-6762490 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr5_4:6762540-6762559 Msa0833670:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr5_4:6762546-6762565 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr5_4:6762801-6762820 Msa0833670:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr5_4:6763050-6763069 Msa0833670:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr5_4:6763150-6763169 Msa0833670:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr5_4:6763243-6763262 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr5_4:6763409-6763428 None:intergenic 30.0%
AAGCCTACTGTATGTTAGAT+CGG + chr5_4:6761081-6761100 Msa0833670:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr5_4:6761087-6761106 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr5_4:6761092-6761111 Msa0833670:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr5_4:6761277-6761296 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr5_4:6761756-6761775 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr5_4:6761754-6761773 Msa0833670:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr5_4:6761756-6761775 Msa0833670:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr5_4:6762227-6762246 Msa0833670:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr5_4:6762252-6762271 Msa0833670:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr5_4:6762615-6762634 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr5_4:6762619-6762638 Msa0833670:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr5_4:6762623-6762642 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr5_4:6762837-6762856 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr5_4:6763186-6763205 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr5_4:6763187-6763206 None:intergenic 35.0%
AAGCCTACTGTATGTTAGAT+CGG + chr5_4:6761081-6761100 Msa0833670:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr5_4:6761087-6761106 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr5_4:6761092-6761111 Msa0833670:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr5_4:6761277-6761296 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr5_4:6761756-6761775 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr5_4:6761754-6761773 Msa0833670:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr5_4:6761756-6761775 Msa0833670:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr5_4:6762227-6762246 Msa0833670:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr5_4:6762252-6762271 Msa0833670:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr5_4:6762615-6762634 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr5_4:6762619-6762638 Msa0833670:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr5_4:6762623-6762642 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr5_4:6762837-6762856 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr5_4:6763186-6763205 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr5_4:6763187-6763206 None:intergenic 35.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr5_4:6761063-6761082 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr5_4:6761075-6761094 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr5_4:6761097-6761116 Msa0833670:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr5_4:6761669-6761688 Msa0833670:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr5_4:6761761-6761780 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr5_4:6762337-6762356 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr5_4:6762339-6762358 Msa0833670:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr5_4:6762382-6762401 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr5_4:6762391-6762410 Msa0833670:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr5_4:6762654-6762673 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr5_4:6762674-6762693 Msa0833670:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr5_4:6762769-6762788 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr5_4:6762838-6762857 Msa0833670:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr5_4:6762848-6762867 Msa0833670:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr5_4:6762901-6762920 Msa0833670:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr5_4:6762931-6762950 Msa0833670:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr5_4:6762936-6762955 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr5_4:6762936-6762955 Msa0833670:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr5_4:6762943-6762962 Msa0833670:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr5_4:6763045-6763064 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr5_4:6763116-6763135 Msa0833670:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr5_4:6763304-6763323 Msa0833670:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr5_4:6763313-6763332 None:intergenic 40.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr5_4:6761063-6761082 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr5_4:6761075-6761094 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr5_4:6761097-6761116 Msa0833670:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr5_4:6761669-6761688 Msa0833670:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr5_4:6761761-6761780 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr5_4:6762337-6762356 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr5_4:6762339-6762358 Msa0833670:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr5_4:6762382-6762401 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr5_4:6762391-6762410 Msa0833670:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr5_4:6762654-6762673 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr5_4:6762674-6762693 Msa0833670:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr5_4:6762769-6762788 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr5_4:6762838-6762857 Msa0833670:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr5_4:6762848-6762867 Msa0833670:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr5_4:6762901-6762920 Msa0833670:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr5_4:6762931-6762950 Msa0833670:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr5_4:6762936-6762955 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr5_4:6762936-6762955 Msa0833670:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr5_4:6762943-6762962 Msa0833670:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr5_4:6763045-6763064 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr5_4:6763116-6763135 Msa0833670:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr5_4:6763304-6763323 Msa0833670:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr5_4:6763313-6763332 None:intergenic 40.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr5_4:6761064-6761083 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr5_4:6761164-6761183 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr5_4:6761177-6761196 Msa0833670:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr5_4:6761235-6761254 Msa0833670:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr5_4:6761309-6761328 Msa0833670:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr5_4:6761973-6761992 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr5_4:6762214-6762233 Msa0833670:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr5_4:6762230-6762249 Msa0833670:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr5_4:6762288-6762307 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr5_4:6762289-6762308 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr5_4:6762353-6762372 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr5_4:6762496-6762515 Msa0833670:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr5_4:6762522-6762541 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr5_4:6762523-6762542 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr5_4:6762564-6762583 Msa0833670:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr5_4:6762612-6762631 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr5_4:6762610-6762629 Msa0833670:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr5_4:6762640-6762659 Msa0833670:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr5_4:6762677-6762696 Msa0833670:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr5_4:6762719-6762738 Msa0833670:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr5_4:6762732-6762751 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr5_4:6762731-6762750 Msa0833670:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr5_4:6762770-6762789 Msa0833670:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr5_4:6762821-6762840 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr5_4:6762821-6762840 Msa0833670:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr5_4:6762822-6762841 Msa0833670:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr5_4:6762842-6762861 Msa0833670:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr5_4:6762948-6762967 Msa0833670:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr5_4:6763103-6763122 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr5_4:6763114-6763133 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr5_4:6763122-6763141 Msa0833670:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr5_4:6763168-6763187 Msa0833670:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr5_4:6763169-6763188 Msa0833670:three_prime_UTR 45.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr5_4:6761064-6761083 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr5_4:6761164-6761183 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr5_4:6761177-6761196 Msa0833670:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr5_4:6761235-6761254 Msa0833670:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr5_4:6761309-6761328 Msa0833670:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr5_4:6761973-6761992 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr5_4:6762214-6762233 Msa0833670:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr5_4:6762230-6762249 Msa0833670:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr5_4:6762288-6762307 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr5_4:6762289-6762308 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr5_4:6762353-6762372 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr5_4:6762496-6762515 Msa0833670:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr5_4:6762522-6762541 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr5_4:6762523-6762542 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr5_4:6762564-6762583 Msa0833670:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr5_4:6762612-6762631 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr5_4:6762610-6762629 Msa0833670:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr5_4:6762640-6762659 Msa0833670:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr5_4:6762677-6762696 Msa0833670:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr5_4:6762719-6762738 Msa0833670:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr5_4:6762732-6762751 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr5_4:6762731-6762750 Msa0833670:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr5_4:6762770-6762789 Msa0833670:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr5_4:6762821-6762840 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr5_4:6762821-6762840 Msa0833670:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr5_4:6762822-6762841 Msa0833670:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr5_4:6762842-6762861 Msa0833670:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr5_4:6762948-6762967 Msa0833670:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr5_4:6763103-6763122 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr5_4:6763114-6763133 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr5_4:6763122-6763141 Msa0833670:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr5_4:6763168-6763187 Msa0833670:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr5_4:6763169-6763188 Msa0833670:three_prime_UTR 45.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr5_4:6761069-6761088 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr5_4:6761126-6761145 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr5_4:6761125-6761144 Msa0833670:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr5_4:6762322-6762341 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr5_4:6762411-6762430 Msa0833670:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr5_4:6762416-6762435 Msa0833670:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr5_4:6762585-6762604 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr5_4:6762586-6762605 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr5_4:6762586-6762605 Msa0833670:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr5_4:6762724-6762743 Msa0833670:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr5_4:6762782-6762801 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr5_4:6762858-6762877 Msa0833670:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr5_4:6762859-6762878 Msa0833670:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr5_4:6762947-6762966 Msa0833670:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr5_4:6763016-6763035 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr5_4:6763023-6763042 Msa0833670:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr5_4:6763038-6763057 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr5_4:6763061-6763080 Msa0833670:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr5_4:6763062-6763081 Msa0833670:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr5_4:6763086-6763105 Msa0833670:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr5_4:6763100-6763119 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr5_4:6763107-6763126 Msa0833670:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr5_4:6763170-6763189 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr5_4:6763167-6763186 Msa0833670:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr5_4:6763170-6763189 Msa0833670:three_prime_UTR 50.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr5_4:6761069-6761088 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr5_4:6761126-6761145 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr5_4:6761125-6761144 Msa0833670:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr5_4:6762322-6762341 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr5_4:6762411-6762430 Msa0833670:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr5_4:6762416-6762435 Msa0833670:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr5_4:6762585-6762604 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr5_4:6762586-6762605 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr5_4:6762586-6762605 Msa0833670:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr5_4:6762724-6762743 Msa0833670:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr5_4:6762782-6762801 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr5_4:6762858-6762877 Msa0833670:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr5_4:6762859-6762878 Msa0833670:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr5_4:6762947-6762966 Msa0833670:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr5_4:6763016-6763035 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr5_4:6763023-6763042 Msa0833670:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr5_4:6763038-6763057 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr5_4:6763061-6763080 Msa0833670:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr5_4:6763062-6763081 Msa0833670:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr5_4:6763086-6763105 Msa0833670:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr5_4:6763100-6763119 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr5_4:6763107-6763126 Msa0833670:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr5_4:6763170-6763189 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr5_4:6763167-6763186 Msa0833670:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr5_4:6763170-6763189 Msa0833670:three_prime_UTR 50.0%
CGCGCAATAGCGATGCGAAA+TGG - chr5_4:6761303-6761322 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr5_4:6761318-6761337 Msa0833670:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr5_4:6761970-6761989 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr5_4:6762350-6762369 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr5_4:6762431-6762450 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr5_4:6762432-6762451 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr5_4:6762435-6762454 Msa0833670:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr5_4:6762862-6762881 Msa0833670:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr5_4:6762875-6762894 Msa0833670:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr5_4:6762980-6762999 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr5_4:6763009-6763028 Msa0833670:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr5_4:6763024-6763043 Msa0833670:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr5_4:6763039-6763058 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr5_4:6763063-6763082 Msa0833670:three_prime_UTR 55.0%
CGCGCAATAGCGATGCGAAA+TGG - chr5_4:6761303-6761322 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr5_4:6761318-6761337 Msa0833670:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr5_4:6761970-6761989 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr5_4:6762350-6762369 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr5_4:6762431-6762450 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr5_4:6762432-6762451 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr5_4:6762435-6762454 Msa0833670:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr5_4:6762862-6762881 Msa0833670:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr5_4:6762875-6762894 Msa0833670:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr5_4:6762980-6762999 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr5_4:6763009-6763028 Msa0833670:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr5_4:6763024-6763043 Msa0833670:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr5_4:6763039-6763058 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr5_4:6763063-6763082 Msa0833670:three_prime_UTR 55.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr5_4:6761138-6761157 Msa0833670:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr5_4:6762438-6762457 Msa0833670:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr5_4:6762442-6762461 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr5_4:6762442-6762461 Msa0833670:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr5_4:6762451-6762470 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr5_4:6762874-6762893 Msa0833670:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr5_4:6762886-6762905 Msa0833670:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr5_4:6763007-6763026 None:intergenic 60.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr5_4:6761138-6761157 Msa0833670:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr5_4:6762438-6762457 Msa0833670:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr5_4:6762442-6762461 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr5_4:6762442-6762461 Msa0833670:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr5_4:6762451-6762470 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr5_4:6762874-6762893 Msa0833670:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr5_4:6762886-6762905 Msa0833670:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr5_4:6763007-6763026 None:intergenic 60.0%
TGACGGCCGACGAGCAACTC+CGG - chr5_4:6761147-6761166 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr5_4:6762509-6762528 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr5_4:6763070-6763089 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr5_4:6763069-6763088 Msa0833670:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr5_4:6763070-6763089 Msa0833670:three_prime_UTR 65.0%
TGACGGCCGACGAGCAACTC+CGG - chr5_4:6761147-6761166 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr5_4:6762509-6762528 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr5_4:6763070-6763089 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr5_4:6763069-6763088 Msa0833670:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr5_4:6763070-6763089 Msa0833670:three_prime_UTR 65.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr5_4:6762964-6762983 Msa0833670:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr5_4:6762995-6763014 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr5_4:6763003-6763022 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr5_4:6763000-6763019 Msa0833670:three_prime_UTR 70.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr5_4:6762964-6762983 Msa0833670:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr5_4:6762995-6763014 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr5_4:6763003-6763022 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr5_4:6763000-6763019 Msa0833670:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6761014 6763460 6761014 ID=Msa0833670;Name=Msa0833670
chr5_4 mRNA 6761014 6763460 6761014 ID=Msa0833670-mRNA-1;Parent=Msa0833670;Name=Msa0833670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|0|0|2|1231|63
chr5_4 exon 6761014 6761198 6761014 ID=Msa0833670-mRNA-1:exon:2939;Parent=Msa0833670-mRNA-1
chr5_4 exon 6762223 6763460 6762223 ID=Msa0833670-mRNA-1:exon:2940;Parent=Msa0833670-mRNA-1
chr5_4 CDS 6761014 6761198 6761014 ID=Msa0833670-mRNA-1:cds;Parent=Msa0833670-mRNA-1
chr5_4 CDS 6762223 6762229 6762223 ID=Msa0833670-mRNA-1:cds;Parent=Msa0833670-mRNA-1
chr5_4 three_prime_UTR 6762230 6763460 6762230 ID=Msa0833670-mRNA-1:three_prime_utr;Parent=Msa0833670-mRNA-1
Gene Sequence

>Msa0833670

ATGAGAAATTTTCGGATTCTAATCACACAGAAAAAAAAATCACAAGCCCAATCCACTTCCGTTGAAGAAGCCTACTGTATGTTAGATCGGAAACAAGTTGGATTGGTGTCCGCACTCAACTCAACTTCAGCCGGAGTTGCTCGTCGGCCGTCAGAAACACTGACGAAGTCATCAACATCATCCAGGCATTAA
Protein sequence

>Msa0833670

MRNFRILITQKKKSQAQSTSVEEAYCMLDRKQVGLVSALNSTSAGVARRPSETLTKSSTSSRH*