AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTGCTTATCATGATTT+TGG 0.160053 5_3:-7900171 None:intergenic
TCCAATTCTTCCATAGTTTC+TGG 0.164945 5_3:-7899385 None:intergenic
CAACCATGACTTACTAATTT+TGG 0.169811 5_3:-7899308 None:intergenic
TGGATGTTCAATTAATTTAT+TGG 0.196351 5_3:-7899251 None:intergenic
TAATTGTTTAATAAGTTTAT+TGG 0.212114 5_3:+7899981 Msa0795890:three_prime_UTR
CATGATAAGGCAGCGATTTA+AGG 0.214236 5_3:-7899531 None:intergenic
CTTACAAAAGGCACGGAAAT+TGG 0.230251 5_3:+7899708 Msa0795890:three_prime_UTR
AGCTTGTCTTAGGGCCTGTT+TGG 0.288788 5_3:-7900218 None:intergenic
ATTGGCAAACAATTTGTCTA+TGG 0.294301 5_3:-7899233 None:intergenic
ATGAGGCCTGAGTTATTTAC+AGG 0.309434 5_3:+7900069 Msa0795890:three_prime_UTR
TTCTTCAACGGAAGTGGATT+GGG 0.319925 5_3:-7897825 None:intergenic
TCCAGAAACTATGGAAGAAT+TGG 0.324623 5_3:+7899384 Msa0795890:three_prime_UTR
AAGGCTTGCACGAGGGGTGC+TGG 0.344303 5_3:+7899834 Msa0795890:three_prime_UTR
CTCTTCTTGCATCGTCGATC+CGG 0.348391 5_3:-7899348 None:intergenic
CCTGCCAGCTGTGCCTGCTC+AGG 0.364956 5_3:+7899765 Msa0795890:three_prime_UTR
TTTAGCTGTTTCAACATTCA+AGG 0.375145 5_3:-7899149 None:intergenic
GGCACAGCTGGCAGGAGCAC+TGG 0.386005 5_3:-7899757 None:intergenic
GTCTTAGGGCCTGTTTGGAT+TGG 0.391712 5_3:-7900213 None:intergenic
TTCAACTCAAGTGGACTTCA+TGG 0.391784 5_3:+7899881 Msa0795890:three_prime_UTR
CTTGGCGTTAATCAACCCTT+GGG 0.392019 5_3:+7899933 Msa0795890:three_prime_UTR
TGTGCCTGCTCAGGTTCTCT+TGG 0.392759 5_3:+7899774 Msa0795890:three_prime_UTR
CATAGTAGATACCGTGTTCT+CGG 0.411266 5_3:-7899416 None:intergenic
TTTAACGATTAGCCCATGTT+TGG 0.415198 5_3:-7899599 None:intergenic
AGCACCCCTCGTGCAAGCCT+TGG 0.419292 5_3:-7899832 None:intergenic
GATCATGCAGCCTCACATAT+TGG 0.419523 5_3:+7899484 Msa0795890:three_prime_UTR
CCTTGGCGTTAATCAACCCT+TGG 0.423068 5_3:+7899932 Msa0795890:three_prime_UTR
ACATGGGCTAATCGTTAAAC+AGG 0.424852 5_3:+7899603 Msa0795890:three_prime_UTR
AAGGCGCATAAGGCCAATCC+TGG 0.426108 5_3:-7899194 None:intergenic
CTTCTTCAACGGAAGTGGAT+TGG 0.429621 5_3:-7897826 None:intergenic
AATGCAGCTTTCCGCATAGA+TGG 0.432684 5_3:-7899115 None:intergenic
CACCGACATTCCAGAAACTA+TGG 0.432903 5_3:+7899375 Msa0795890:three_prime_UTR
TGCTGGGAATACCACCTTTG+TGG 0.435864 5_3:+7899851 Msa0795890:three_prime_UTR
CCTGAGCAGGCACAGCTGGC+AGG 0.442970 5_3:-7899765 None:intergenic
AGAACCTGAGCAGGCACAGC+TGG 0.443395 5_3:-7899769 None:intergenic
TGTTTGGATGCTATTGCCCT+TGG 0.447361 5_3:-7899583 None:intergenic
TCGCACTTGTTGTACGCAAT+GGG 0.447959 5_3:-7899050 None:intergenic
GCAAATAAACCAATCCAAAC+AGG 0.452043 5_3:+7900204 Msa0795890:three_prime_UTR
GTAGGCTTCTTCAACGGAAG+TGG 0.454599 5_3:-7897831 None:intergenic
GTTCTGCATCTAGTAACTTA+AGG 0.460780 5_3:+7899017 Msa0795890:three_prime_UTR
CAAAAGGCACGGAAATTGGC+TGG 0.465990 5_3:+7899712 Msa0795890:three_prime_UTR
TCTTCTTGCATCGTCGATCC+GGG 0.467160 5_3:-7899347 None:intergenic
TCTCTTGGATTCCCTACGCC+GGG 0.469407 5_3:+7899789 Msa0795890:three_prime_UTR
GCCACCACACAAGGCGCATA+AGG 0.473025 5_3:-7899204 None:intergenic
TCTCTGCAATCACACTTGAC+AGG 0.474712 5_3:-7899285 None:intergenic
AGGCTTGCACGAGGGGTGCT+GGG 0.476721 5_3:+7899835 Msa0795890:three_prime_UTR
CTAAACTAGTTTAGTTACCT+TGG 0.479176 5_3:+7899915 Msa0795890:three_prime_UTR
CTTGACAGGGCCAGCGCTGT+TGG 0.479492 5_3:-7899271 None:intergenic
ATCAAATTGCACCCGGCGTA+GGG 0.494435 5_3:-7899800 None:intergenic
GTTGCTTCAGATCCCAGGAT+TGG 0.495782 5_3:+7899181 Msa0795890:three_prime_UTR
TTCGCACTTGTTGTACGCAA+TGG 0.499355 5_3:-7899051 None:intergenic
CGGTTGTGACCAGCATGATA+AGG 0.504331 5_3:-7899544 None:intergenic
TTCTCTTGGATTCCCTACGC+CGG 0.506279 5_3:+7899788 Msa0795890:three_prime_UTR
TGGATGTTGCTTCAGATCCC+AGG 0.510117 5_3:+7899176 Msa0795890:three_prime_UTR
TTCCATAGTTTCTGGAATGT+CGG 0.513075 5_3:-7899377 None:intergenic
CGCAAGGATTTAATGAGTGG+TGG 0.516421 5_3:+7898995 Msa0795890:three_prime_UTR
TGTTGGCCTGTAAATAACTC+AGG 0.518520 5_3:-7900075 None:intergenic
GGAAGGTCAAGGAGAGAGAT+GGG 0.518846 5_3:+7899624 Msa0795890:three_prime_UTR
AAGCCTACTGTATGTTAGAT+CGG 0.520343 5_3:+7897846 Msa0795890:CDS
AAATCGCTGCCTTATCATGC+TGG 0.522737 5_3:+7899535 Msa0795890:three_prime_UTR
TGATCCAAGGCTTGCACGAG+GGG 0.526320 5_3:+7899828 Msa0795890:three_prime_UTR
AGCCAATGCACACTTACAAA+AGG 0.527197 5_3:+7899696 Msa0795890:three_prime_UTR
AGGAAGGTCAAGGAGAGAGA+TGG 0.527843 5_3:+7899623 Msa0795890:three_prime_UTR
TATGCGCCTTGTGTGGTGGC+AGG 0.528538 5_3:+7899207 Msa0795890:three_prime_UTR
AGATCGGAAACAAGTTGGAT+TGG 0.529168 5_3:+7897862 Msa0795890:CDS
TGGCTTCCTGCCACCACACA+AGG 0.536207 5_3:-7899213 None:intergenic
ATGTTAGATCGGAAACAAGT+TGG 0.537118 5_3:+7897857 Msa0795890:CDS
GCACTCAACTCAACTTCAGC+CGG 0.547160 5_3:+7897890 Msa0795890:CDS
CATCAAATTGCACCCGGCGT+AGG 0.548272 5_3:-7899801 None:intergenic
TTTCCGATCTAACATACAGT+AGG 0.549642 5_3:-7897849 None:intergenic
GGCTGGGAGTGTGCCTGCTG+AGG 0.550043 5_3:+7899729 Msa0795890:three_prime_UTR
AGGGCAATAGCATCCAAACA+TGG 0.560245 5_3:+7899586 Msa0795890:three_prime_UTR
AGCACTGGAATAGCCTCAGC+AGG 0.562374 5_3:-7899742 None:intergenic
TGAAACGATCTGTTGAAGCC+CGG 0.564950 5_3:+7899329 Msa0795890:three_prime_UTR
GAATCCAAGAGAACCTGAGC+AGG 0.565134 5_3:-7899778 None:intergenic
CGAAGTCATCAACATCATCC+AGG 0.569800 5_3:+7897942 Msa0795890:CDS
AATTTGATGTGTTTGATCCA+AGG 0.570713 5_3:+7899815 Msa0795890:three_prime_UTR
GTGTGAGGCAGTTTATGAAA+TGG 0.571413 5_3:+7899666 Msa0795890:three_prime_UTR
CTCTGCAATCACACTTGACA+GGG 0.573273 5_3:-7899284 None:intergenic
AGACCAAAATTAGTAAGTCA+TGG 0.574427 5_3:+7899305 Msa0795890:three_prime_UTR
TGACGGCCGACGAGCAACTC+CGG 0.577905 5_3:-7897909 None:intergenic
AGGTCAAGGAGAGAGATGGG+TGG 0.579175 5_3:+7899627 Msa0795890:three_prime_UTR
CATCTGTAGGCATTAACGCA+AGG 0.580140 5_3:+7898979 Msa0795890:intron
AGAATCTAGTTACTGTTACA+TGG 0.581932 5_3:-7900005 None:intergenic
CTGTTTCAACATTCAAGGCA+CGG 0.582336 5_3:-7899144 None:intergenic
AATTGAACATCCAACAGCGC+TGG 0.586583 5_3:+7899261 Msa0795890:three_prime_UTR
GCCTTATGCGCCTTGTGTGG+TGG 0.587629 5_3:+7899203 Msa0795890:three_prime_UTR
ATCGTTAAACAGGAAGGTCA+AGG 0.590180 5_3:+7899613 Msa0795890:three_prime_UTR
TAACGCAAGGATTTAATGAG+TGG 0.593914 5_3:+7898992 Msa0795890:exon
AAGTCCACTTGAGTTGAAGC+TGG 0.593973 5_3:-7899876 None:intergenic
TCAAGTGGACTTCATGGAGA+AGG 0.595439 5_3:+7899887 Msa0795890:three_prime_UTR
TTCTCGCGAGGGTCTGTGTG+AGG 0.600535 5_3:+7899651 Msa0795890:three_prime_UTR
CATACAGTAGGCTTCTTCAA+CGG 0.601152 5_3:-7897837 None:intergenic
AAAAGGCACGGAAATTGGCT+GGG 0.603375 5_3:+7899713 Msa0795890:three_prime_UTR
TCACATATTGGCAAGGCTAG+TGG 0.604755 5_3:+7899496 Msa0795890:three_prime_UTR
CAAACACATCAAATTGCACC+CGG 0.606483 5_3:-7899807 None:intergenic
GGTACCAGCTTCAACTCAAG+TGG 0.609461 5_3:+7899872 Msa0795890:three_prime_UTR
TTTGATCCAAGGCTTGCACG+AGG 0.609726 5_3:+7899826 Msa0795890:three_prime_UTR
CCAAGGGTTGATTAACGCCA+AGG 0.610632 5_3:-7899932 None:intergenic
CATAGTTTCTGGAATGTCGG+TGG 0.610747 5_3:-7899374 None:intergenic
CTTCAGCCGGAGTTGCTCGT+CGG 0.612012 5_3:+7897903 Msa0795890:CDS
GACTTCGTCAGTGTTTCTGA+CGG 0.616849 5_3:-7897926 None:intergenic
AGGCGCATAAGGCCAATCCT+GGG 0.619021 5_3:-7899193 None:intergenic
TGCAGCCTCACATATTGGCA+AGG 0.620209 5_3:+7899489 Msa0795890:three_prime_UTR
AGATGGGTGGATTCTCGCGA+GGG 0.621395 5_3:+7899640 Msa0795890:three_prime_UTR
TGGCGTTAATCAACCCTTGG+GGG 0.621962 5_3:+7899935 Msa0795890:three_prime_UTR
TTGTACTTGACACTTCAAGC+TGG 0.625478 5_3:+7899439 Msa0795890:three_prime_UTR
TTGATCCAAGGCTTGCACGA+GGG 0.629176 5_3:+7899827 Msa0795890:three_prime_UTR
TACTTGACACTTCAAGCTGG+CGG 0.631640 5_3:+7899442 Msa0795890:three_prime_UTR
GGGCAATAGCATCCAAACAT+GGG 0.631843 5_3:+7899587 Msa0795890:three_prime_UTR
ATGCACACTTACAAAAGGCA+CGG 0.641522 5_3:+7899701 Msa0795890:three_prime_UTR
TGTTGAAACAGCTAAAGCGA+TGG 0.649208 5_3:+7899156 Msa0795890:three_prime_UTR
GATCGACGATGCAAGAAGAG+AGG 0.649326 5_3:+7899351 Msa0795890:three_prime_UTR
TAGATGGAGGTAATTCGAGA+AGG 0.649396 5_3:-7899099 None:intergenic
GGGCTAATCGTTAAACAGGA+AGG 0.649412 5_3:+7899607 Msa0795890:three_prime_UTR
GGAGAAATATGCCGAGAACA+CGG 0.651307 5_3:+7899405 Msa0795890:three_prime_UTR
TTGGCGTTAATCAACCCTTG+GGG 0.651882 5_3:+7899934 Msa0795890:three_prime_UTR
CGAGAAGGCAGAGATAGTGA+TGG 0.655909 5_3:-7899084 None:intergenic
GAGATGGGTGGATTCTCGCG+AGG 0.657859 5_3:+7899639 Msa0795890:three_prime_UTR
GCAGCTTTCCGCATAGATGG+AGG 0.659881 5_3:-7899112 None:intergenic
TTGGCCTTATGCGCCTTGTG+TGG 0.661315 5_3:+7899200 Msa0795890:three_prime_UTR
GGCTGAAGTTGAGTTGAGTG+CGG 0.665617 5_3:-7897888 None:intergenic
ACTAGCCTTGCCAATATGTG+AGG 0.668625 5_3:-7899494 None:intergenic
TGAAGCTGGTACCACAAAGG+TGG 0.671108 5_3:-7899862 None:intergenic
AGTTGAAGCTGGTACCACAA+AGG 0.678191 5_3:-7899865 None:intergenic
TCGAATTACCTCCATCTATG+CGG 0.683768 5_3:+7899104 Msa0795890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTTTTAAAATATA+TGG + chr5_3:7898932-7898951 Msa0795890:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr5_3:7898936-7898955 Msa0795890:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr5_3:7898937-7898956 Msa0795890:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr5_3:7899981-7900000 Msa0795890:three_prime_UTR 10.0%
!!! CAACTTTTTTTTAAAATATA+TGG + chr5_3:7898932-7898951 Msa0795890:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr5_3:7898936-7898955 Msa0795890:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr5_3:7898937-7898956 Msa0795890:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr5_3:7899981-7900000 Msa0795890:three_prime_UTR 10.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr5_3:7898471-7898490 Msa0795890:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr5_3:7898576-7898595 Msa0795890:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr5_3:7898752-7898771 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr5_3:7898788-7898807 Msa0795890:intron 15.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr5_3:7898471-7898490 Msa0795890:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr5_3:7898576-7898595 Msa0795890:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr5_3:7898752-7898771 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr5_3:7898788-7898807 Msa0795890:intron 15.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr5_3:7897963-7897982 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr5_3:7898159-7898178 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr5_3:7898269-7898288 Msa0795890:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr5_3:7898276-7898295 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr5_3:7898713-7898732 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr5_3:7899254-7899273 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr5_3:7900052-7900071 Msa0795890:three_prime_UTR 20.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr5_3:7897963-7897982 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr5_3:7898159-7898178 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr5_3:7898269-7898288 Msa0795890:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr5_3:7898276-7898295 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr5_3:7898713-7898732 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr5_3:7899254-7899273 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr5_3:7900052-7900071 Msa0795890:three_prime_UTR 20.0%
! AGCTTCTAATATATGCTAAA+GGG - chr5_3:7898248-7898267 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr5_3:7898249-7898268 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr5_3:7898277-7898296 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr5_3:7898275-7898294 Msa0795890:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr5_3:7898714-7898733 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr5_3:7898845-7898864 Msa0795890:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr5_3:7899567-7899586 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr5_3:7899567-7899586 Msa0795890:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr5_3:7900095-7900114 None:intergenic 25.0%
! AGCTTCTAATATATGCTAAA+GGG - chr5_3:7898248-7898267 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr5_3:7898249-7898268 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr5_3:7898277-7898296 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr5_3:7898275-7898294 Msa0795890:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr5_3:7898714-7898733 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr5_3:7898845-7898864 Msa0795890:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr5_3:7899567-7899586 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr5_3:7899567-7899586 Msa0795890:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr5_3:7900095-7900114 None:intergenic 25.0%
! AAACAACTGTCTTGCATTTT+CGG + chr5_3:7898416-7898435 Msa0795890:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr5_3:7898486-7898505 Msa0795890:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr5_3:7898487-7898506 Msa0795890:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr5_3:7898520-7898539 Msa0795890:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr5_3:7898909-7898928 Msa0795890:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr5_3:7898966-7898985 Msa0795890:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr5_3:7899152-7899171 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr5_3:7899236-7899255 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr5_3:7899305-7899324 Msa0795890:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr5_3:7899311-7899330 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr5_3:7899566-7899585 Msa0795890:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr5_3:7899815-7899834 Msa0795890:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr5_3:7899915-7899934 Msa0795890:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr5_3:7900008-7900027 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr5_3:7900174-7900193 None:intergenic 30.0%
! AAACAACTGTCTTGCATTTT+CGG + chr5_3:7898416-7898435 Msa0795890:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr5_3:7898486-7898505 Msa0795890:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr5_3:7898487-7898506 Msa0795890:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr5_3:7898520-7898539 Msa0795890:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr5_3:7898909-7898928 Msa0795890:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr5_3:7898966-7898985 Msa0795890:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr5_3:7899152-7899171 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr5_3:7899236-7899255 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr5_3:7899305-7899324 Msa0795890:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr5_3:7899311-7899330 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr5_3:7899566-7899585 Msa0795890:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr5_3:7899815-7899834 Msa0795890:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr5_3:7899915-7899934 Msa0795890:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr5_3:7900008-7900027 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr5_3:7900174-7900193 None:intergenic 30.0%
AAGCCTACTGTATGTTAGAT+CGG + chr5_3:7897846-7897865 Msa0795890:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr5_3:7897852-7897871 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr5_3:7897857-7897876 Msa0795890:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr5_3:7898042-7898061 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr5_3:7898521-7898540 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr5_3:7898519-7898538 Msa0795890:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr5_3:7898521-7898540 Msa0795890:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr5_3:7898992-7899011 Msa0795890:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr5_3:7899017-7899036 Msa0795890:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr5_3:7899380-7899399 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr5_3:7899384-7899403 Msa0795890:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr5_3:7899388-7899407 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr5_3:7899602-7899621 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr5_3:7899951-7899970 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr5_3:7899952-7899971 None:intergenic 35.0%
AAGCCTACTGTATGTTAGAT+CGG + chr5_3:7897846-7897865 Msa0795890:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr5_3:7897852-7897871 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr5_3:7897857-7897876 Msa0795890:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr5_3:7898042-7898061 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr5_3:7898521-7898540 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr5_3:7898519-7898538 Msa0795890:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr5_3:7898521-7898540 Msa0795890:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr5_3:7898992-7899011 Msa0795890:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr5_3:7899017-7899036 Msa0795890:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr5_3:7899380-7899399 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr5_3:7899384-7899403 Msa0795890:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr5_3:7899388-7899407 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr5_3:7899602-7899621 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr5_3:7899951-7899970 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr5_3:7899952-7899971 None:intergenic 35.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr5_3:7897828-7897847 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr5_3:7897840-7897859 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr5_3:7897862-7897881 Msa0795890:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr5_3:7898434-7898453 Msa0795890:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr5_3:7898526-7898545 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr5_3:7899102-7899121 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr5_3:7899104-7899123 Msa0795890:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr5_3:7899147-7899166 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr5_3:7899156-7899175 Msa0795890:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr5_3:7899419-7899438 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr5_3:7899439-7899458 Msa0795890:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr5_3:7899534-7899553 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr5_3:7899603-7899622 Msa0795890:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr5_3:7899613-7899632 Msa0795890:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr5_3:7899666-7899685 Msa0795890:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr5_3:7899696-7899715 Msa0795890:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr5_3:7899701-7899720 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr5_3:7899701-7899720 Msa0795890:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr5_3:7899708-7899727 Msa0795890:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr5_3:7899810-7899829 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr5_3:7899881-7899900 Msa0795890:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr5_3:7900069-7900088 Msa0795890:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr5_3:7900078-7900097 None:intergenic 40.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr5_3:7897828-7897847 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr5_3:7897840-7897859 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr5_3:7897862-7897881 Msa0795890:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr5_3:7898434-7898453 Msa0795890:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr5_3:7898526-7898545 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr5_3:7899102-7899121 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr5_3:7899104-7899123 Msa0795890:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr5_3:7899147-7899166 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr5_3:7899156-7899175 Msa0795890:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr5_3:7899419-7899438 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr5_3:7899439-7899458 Msa0795890:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr5_3:7899534-7899553 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr5_3:7899603-7899622 Msa0795890:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr5_3:7899613-7899632 Msa0795890:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr5_3:7899666-7899685 Msa0795890:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr5_3:7899696-7899715 Msa0795890:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr5_3:7899701-7899720 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr5_3:7899701-7899720 Msa0795890:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr5_3:7899708-7899727 Msa0795890:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr5_3:7899810-7899829 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr5_3:7899881-7899900 Msa0795890:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr5_3:7900069-7900088 Msa0795890:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr5_3:7900078-7900097 None:intergenic 40.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr5_3:7897829-7897848 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr5_3:7897929-7897948 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr5_3:7897942-7897961 Msa0795890:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr5_3:7898000-7898019 Msa0795890:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr5_3:7898074-7898093 Msa0795890:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr5_3:7898738-7898757 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr5_3:7898979-7898998 Msa0795890:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr5_3:7898995-7899014 Msa0795890:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr5_3:7899053-7899072 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr5_3:7899054-7899073 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr5_3:7899118-7899137 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr5_3:7899261-7899280 Msa0795890:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr5_3:7899287-7899306 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr5_3:7899288-7899307 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr5_3:7899329-7899348 Msa0795890:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr5_3:7899377-7899396 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr5_3:7899375-7899394 Msa0795890:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr5_3:7899405-7899424 Msa0795890:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr5_3:7899442-7899461 Msa0795890:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr5_3:7899484-7899503 Msa0795890:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr5_3:7899497-7899516 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr5_3:7899496-7899515 Msa0795890:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr5_3:7899535-7899554 Msa0795890:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr5_3:7899586-7899605 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr5_3:7899586-7899605 Msa0795890:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr5_3:7899587-7899606 Msa0795890:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr5_3:7899607-7899626 Msa0795890:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr5_3:7899713-7899732 Msa0795890:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr5_3:7899868-7899887 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr5_3:7899879-7899898 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr5_3:7899887-7899906 Msa0795890:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr5_3:7899933-7899952 Msa0795890:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr5_3:7899934-7899953 Msa0795890:three_prime_UTR 45.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr5_3:7897829-7897848 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr5_3:7897929-7897948 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr5_3:7897942-7897961 Msa0795890:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr5_3:7898000-7898019 Msa0795890:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr5_3:7898074-7898093 Msa0795890:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr5_3:7898738-7898757 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr5_3:7898979-7898998 Msa0795890:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr5_3:7898995-7899014 Msa0795890:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr5_3:7899053-7899072 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr5_3:7899054-7899073 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr5_3:7899118-7899137 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr5_3:7899261-7899280 Msa0795890:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr5_3:7899287-7899306 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr5_3:7899288-7899307 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr5_3:7899329-7899348 Msa0795890:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr5_3:7899377-7899396 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr5_3:7899375-7899394 Msa0795890:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr5_3:7899405-7899424 Msa0795890:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr5_3:7899442-7899461 Msa0795890:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr5_3:7899484-7899503 Msa0795890:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr5_3:7899497-7899516 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr5_3:7899496-7899515 Msa0795890:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr5_3:7899535-7899554 Msa0795890:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr5_3:7899586-7899605 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr5_3:7899586-7899605 Msa0795890:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr5_3:7899587-7899606 Msa0795890:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr5_3:7899607-7899626 Msa0795890:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr5_3:7899713-7899732 Msa0795890:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr5_3:7899868-7899887 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr5_3:7899879-7899898 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr5_3:7899887-7899906 Msa0795890:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr5_3:7899933-7899952 Msa0795890:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr5_3:7899934-7899953 Msa0795890:three_prime_UTR 45.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr5_3:7897834-7897853 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr5_3:7897891-7897910 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr5_3:7897890-7897909 Msa0795890:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr5_3:7899087-7899106 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr5_3:7899176-7899195 Msa0795890:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr5_3:7899181-7899200 Msa0795890:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr5_3:7899350-7899369 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr5_3:7899351-7899370 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr5_3:7899351-7899370 Msa0795890:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr5_3:7899489-7899508 Msa0795890:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr5_3:7899547-7899566 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr5_3:7899623-7899642 Msa0795890:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr5_3:7899624-7899643 Msa0795890:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr5_3:7899712-7899731 Msa0795890:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr5_3:7899781-7899800 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr5_3:7899788-7899807 Msa0795890:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr5_3:7899803-7899822 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr5_3:7899826-7899845 Msa0795890:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr5_3:7899827-7899846 Msa0795890:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr5_3:7899851-7899870 Msa0795890:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr5_3:7899865-7899884 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr5_3:7899872-7899891 Msa0795890:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr5_3:7899935-7899954 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr5_3:7899932-7899951 Msa0795890:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr5_3:7899935-7899954 Msa0795890:three_prime_UTR 50.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr5_3:7897834-7897853 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr5_3:7897891-7897910 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr5_3:7897890-7897909 Msa0795890:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr5_3:7899087-7899106 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr5_3:7899176-7899195 Msa0795890:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr5_3:7899181-7899200 Msa0795890:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr5_3:7899350-7899369 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr5_3:7899351-7899370 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr5_3:7899351-7899370 Msa0795890:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr5_3:7899489-7899508 Msa0795890:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr5_3:7899547-7899566 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr5_3:7899623-7899642 Msa0795890:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr5_3:7899624-7899643 Msa0795890:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr5_3:7899712-7899731 Msa0795890:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr5_3:7899781-7899800 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr5_3:7899788-7899807 Msa0795890:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr5_3:7899803-7899822 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr5_3:7899826-7899845 Msa0795890:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr5_3:7899827-7899846 Msa0795890:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr5_3:7899851-7899870 Msa0795890:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr5_3:7899865-7899884 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr5_3:7899872-7899891 Msa0795890:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr5_3:7899935-7899954 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr5_3:7899932-7899951 Msa0795890:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr5_3:7899935-7899954 Msa0795890:three_prime_UTR 50.0%
CGCGCAATAGCGATGCGAAA+TGG - chr5_3:7898068-7898087 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr5_3:7898083-7898102 Msa0795890:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr5_3:7898735-7898754 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr5_3:7899115-7899134 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr5_3:7899196-7899215 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr5_3:7899197-7899216 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr5_3:7899200-7899219 Msa0795890:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr5_3:7899627-7899646 Msa0795890:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr5_3:7899640-7899659 Msa0795890:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr5_3:7899745-7899764 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr5_3:7899774-7899793 Msa0795890:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr5_3:7899789-7899808 Msa0795890:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr5_3:7899804-7899823 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr5_3:7899828-7899847 Msa0795890:three_prime_UTR 55.0%
CGCGCAATAGCGATGCGAAA+TGG - chr5_3:7898068-7898087 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr5_3:7898083-7898102 Msa0795890:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr5_3:7898735-7898754 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr5_3:7899115-7899134 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr5_3:7899196-7899215 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr5_3:7899197-7899216 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr5_3:7899200-7899219 Msa0795890:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr5_3:7899627-7899646 Msa0795890:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr5_3:7899640-7899659 Msa0795890:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr5_3:7899745-7899764 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr5_3:7899774-7899793 Msa0795890:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr5_3:7899789-7899808 Msa0795890:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr5_3:7899804-7899823 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr5_3:7899828-7899847 Msa0795890:three_prime_UTR 55.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr5_3:7897903-7897922 Msa0795890:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr5_3:7899203-7899222 Msa0795890:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr5_3:7899207-7899226 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr5_3:7899207-7899226 Msa0795890:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr5_3:7899216-7899235 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr5_3:7899639-7899658 Msa0795890:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr5_3:7899651-7899670 Msa0795890:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr5_3:7899772-7899791 None:intergenic 60.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr5_3:7897903-7897922 Msa0795890:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr5_3:7899203-7899222 Msa0795890:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr5_3:7899207-7899226 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr5_3:7899207-7899226 Msa0795890:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr5_3:7899216-7899235 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr5_3:7899639-7899658 Msa0795890:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr5_3:7899651-7899670 Msa0795890:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr5_3:7899772-7899791 None:intergenic 60.0%
TGACGGCCGACGAGCAACTC+CGG - chr5_3:7897912-7897931 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr5_3:7899274-7899293 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr5_3:7899835-7899854 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr5_3:7899834-7899853 Msa0795890:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr5_3:7899835-7899854 Msa0795890:three_prime_UTR 65.0%
TGACGGCCGACGAGCAACTC+CGG - chr5_3:7897912-7897931 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr5_3:7899274-7899293 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr5_3:7899835-7899854 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr5_3:7899834-7899853 Msa0795890:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr5_3:7899835-7899854 Msa0795890:three_prime_UTR 65.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr5_3:7899729-7899748 Msa0795890:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr5_3:7899760-7899779 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr5_3:7899768-7899787 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr5_3:7899765-7899784 Msa0795890:three_prime_UTR 70.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr5_3:7899729-7899748 Msa0795890:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr5_3:7899760-7899779 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr5_3:7899768-7899787 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr5_3:7899765-7899784 Msa0795890:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7897779 7900225 7897779 ID=Msa0795890;Name=Msa0795890
chr5_3 mRNA 7897779 7900225 7897779 ID=Msa0795890-mRNA-1;Parent=Msa0795890;Name=Msa0795890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|0|0|2|1231|63
chr5_3 exon 7897779 7897963 7897779 ID=Msa0795890-mRNA-1:exon:3270;Parent=Msa0795890-mRNA-1
chr5_3 exon 7898988 7900225 7898988 ID=Msa0795890-mRNA-1:exon:3271;Parent=Msa0795890-mRNA-1
chr5_3 CDS 7897779 7897963 7897779 ID=Msa0795890-mRNA-1:cds;Parent=Msa0795890-mRNA-1
chr5_3 CDS 7898988 7898994 7898988 ID=Msa0795890-mRNA-1:cds;Parent=Msa0795890-mRNA-1
chr5_3 three_prime_UTR 7898995 7900225 7898995 ID=Msa0795890-mRNA-1:three_prime_utr;Parent=Msa0795890-mRNA-1
Gene Sequence

>Msa0795890

ATGAGAAATTTTCGGATTCTAATCACACAGAAAAAAAAATCACAAGCCCAATCCACTTCCGTTGAAGAAGCCTACTGTATGTTAGATCGGAAACAAGTTGGATTGGTGTCCGCACTCAACTCAACTTCAGCCGGAGTTGCTCGTCGGCCGTCAGAAACACTGACGAAGTCATCAACATCATCCAGGCATTAA
Protein sequence

>Msa0795890

MRNFRILITQKKKSQAQSTSVEEAYCMLDRKQVGLVSALNSTSAGVARRPSETLTKSSTSSRH*