AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0952630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952630 MtrunA17_Chr6g0469651 87.218 133 9 2 1 125 1 133 8.84e-57 172
Msa0952630 MtrunA17_Chr6g0469681 72.656 128 31 2 1 125 1 127 1.37e-49 154
Msa0952630 MtrunA17_Chr1g0202501 66.154 130 39 2 1 125 1 130 3.60e-41 133
Msa0952630 MtrunA17_Chr8g0387471 54.615 130 51 3 1 125 1 127 1.34e-35 119
Msa0952630 MtrunA17_Chr6g0469571 60.305 131 39 5 1 125 1 124 5.72e-35 117
Msa0952630 MtrunA17_Chr6g0469591 60.305 131 39 5 1 125 1 124 1.31e-34 116
Msa0952630 MtrunA17_Chr6g0469551 59.542 131 40 5 1 125 1 124 1.78e-34 115
Msa0952630 MtrunA17_Chr1g0202541 56.296 135 48 3 1 124 1 135 1.87e-32 111
Msa0952630 MtrunA17_Chr6g0469671 59.804 102 37 2 1 98 1 102 7.81e-30 103
Msa0952630 MtrunA17_Chr1g0202561 55.797 138 47 4 1 124 1 138 1.44e-29 103
Msa0952630 MtrunA17_Chr7g0233231 49.580 119 43 4 1 112 1 109 5.60e-28 99.0
Msa0952630 MtrunA17_Chr1g0202581 55.147 136 44 4 1 124 1 131 1.34e-27 98.6
Msa0952630 MtrunA17_Chr7g0233181 47.863 117 40 2 1 114 1 99 2.04e-27 97.4
Msa0952630 MtrunA17_Chr1g0204291 54.412 136 45 4 1 124 1 131 3.14e-27 97.8
Msa0952630 MtrunA17_Chr6g0469541 49.138 116 47 3 1 111 1 109 3.38e-27 97.1
Msa0952630 MtrunA17_Chr7g0233251 60.976 82 29 1 1 79 1 82 4.15e-27 97.1
Msa0952630 MtrunA17_Chr7g0233191 59.756 82 30 1 1 79 1 82 1.17e-26 95.5
Msa0952630 MtrunA17_Chr7g0233211 47.899 119 45 4 1 112 1 109 3.12e-26 94.7
Msa0952630 MtrunA17_Chr7g0233201 58.537 82 31 1 1 79 1 82 3.30e-26 94.4
Msa0952630 MtrunA17_Chr7g0248671 37.640 178 52 5 1 125 1 172 5.60e-17 72.4
Msa0952630 MtrunA17_Chr8g0348361 29.771 131 65 2 19 125 22 149 5.19e-14 64.3
Msa0952630 MtrunA17_Chr3g0120541 45.783 83 37 4 2 78 4 84 7.74e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952630 AT1G01490.1 35.000 180 59 5 1 125 1 177 7.25e-19 77.8
Msa0952630 AT1G01490.2 35.000 180 59 5 1 125 1 177 7.25e-19 77.8
Msa0952630 AT1G01490.4 34.831 178 58 5 3 125 30 204 7.32e-18 75.9
Msa0952630 AT5G52740.1 35.484 124 71 2 1 123 1 116 3.82e-16 69.3
Msa0952630 AT5G52760.1 42.342 111 52 5 5 112 7 108 6.06e-15 66.6
Msa0952630 AT5G52750.1 49.231 65 30 1 3 64 5 69 6.70e-13 61.6

Find 29 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATTGAAATATTATTTA+TGG 0.053062 6_3:+47513050 Msa0952630:exon
AGATCAGCCAATTCTTCTTT+TGG 0.232915 6_3:-47512925 None:intergenic
GAAAGAAGAACCAAAGAAAA+AGG 0.233167 6_3:+47512900 Msa0952630:CDS
ACCAGCCAAAGAAGAGAAAA+AGG 0.297190 6_3:+47512867 Msa0952630:CDS
ACAAGAAAAGAAGAATAAAA+AGG 0.310585 6_3:-47513151 None:intergenic
TTGTAATAGTAATAAGGATA+TGG 0.319654 6_3:-47512988 None:intergenic
AAAGGACCCAAAAGAAGAAT+TGG 0.383628 6_3:+47512918 Msa0952630:CDS
AAGACCAGATACAGTCTTCA+TGG 0.391977 6_3:-47512398 None:intergenic
AAAGCCATGAAGACTGTATC+TGG 0.395060 6_3:+47512394 Msa0952630:CDS
CATGAGAAGAAGTTGTGGTT+TGG 0.435437 6_3:+47513101 Msa0952630:three_prime_UTR
GAGAAGAAGTTGTGGTTTGG+AGG 0.481222 6_3:+47513104 Msa0952630:three_prime_UTR
TTGACAGAAAATAGTGCTAA+AGG 0.490233 6_3:+47512342 Msa0952630:intron
AGGGGTTGAGTCTGTTTCAG+TGG 0.493775 6_3:+47512744 Msa0952630:intron
CTTAGCTTAGATAAGAGAAA+CGG 0.500695 6_3:-47513187 None:intergenic
GTCTGTTTCAGTGGACATGA+AGG 0.510268 6_3:+47512753 Msa0952630:CDS
AGAAGAAGTTGTGGTTTGGA+GGG 0.510869 6_3:+47513105 Msa0952630:three_prime_UTR
CTAGCTTCAAATCAATATGC+AGG 0.524283 6_3:+47512020 Msa0952630:exon
TTCATGTGGTGGGAAAGTTA+AGG 0.525040 6_3:+47512812 Msa0952630:CDS
GTGAGTAGTGTTGCTAAAGA+AGG 0.550932 6_3:-47511998 None:intergenic
CATGCTGAAATAGTTTCTGT+TGG 0.553192 6_3:+47512844 Msa0952630:CDS
TAACAAATAACACACCCACT+TGG 0.567845 6_3:-47513027 None:intergenic
AGAATTGGCTGATCTTGTGA+AGG 0.579782 6_3:+47512933 Msa0952630:CDS
ATAGATACTGTTCATGTGGT+GGG 0.580942 6_3:+47512802 Msa0952630:CDS
CATAGATACTGTTCATGTGG+TGG 0.583428 6_3:+47512801 Msa0952630:CDS
GAGAACATGAGAAGAAGTTG+TGG 0.595389 6_3:+47513096 Msa0952630:three_prime_UTR
TTATTACTATTACAAAACTG+TGG 0.633353 6_3:+47512996 Msa0952630:CDS
CTGTGGAAGAGTCTCCAAGT+GGG 0.681825 6_3:+47513013 Msa0952630:CDS
ACTGTGGAAGAGTCTCCAAG+TGG 0.713975 6_3:+47513012 Msa0952630:CDS
AGACATAGATACTGTTCATG+TGG 0.726024 6_3:+47512798 Msa0952630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_3:47512232-47512251 None:intergenic 10.0%
!!! TTTTTATACTCTAAAAATAA+AGG + chr6_3:47512667-47512686 Msa0952630:intron 10.0%
!! AAAGATTGAAATATTATTTA+TGG + chr6_3:47513050-47513069 Msa0952630:exon 10.0%
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_3:47512232-47512251 None:intergenic 10.0%
!!! TTTTTATACTCTAAAAATAA+AGG + chr6_3:47512667-47512686 Msa0952630:intron 10.0%
!! AAAGATTGAAATATTATTTA+TGG + chr6_3:47513050-47513069 Msa0952630:exon 10.0%
!! TGTTATAAAATTTCATCATT+AGG - chr6_3:47512085-47512104 None:intergenic 15.0%
!! TAAAAATAAAGGAAGAAAAA+TGG + chr6_3:47512678-47512697 Msa0952630:intron 15.0%
!!! TTTTTGTTATTTTCTTTTTC+AGG + chr6_3:47512724-47512743 Msa0952630:intron 15.0%
!!! TTTTGTTATTTTCTTTTTCA+GGG + chr6_3:47512725-47512744 Msa0952630:intron 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_3:47513236-47513255 Msa0952630:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_3:47513237-47513256 Msa0952630:three_prime_UTR 15.0%
!! TGTTATAAAATTTCATCATT+AGG - chr6_3:47512085-47512104 None:intergenic 15.0%
!! TAAAAATAAAGGAAGAAAAA+TGG + chr6_3:47512678-47512697 Msa0952630:intron 15.0%
!!! TTTTTGTTATTTTCTTTTTC+AGG + chr6_3:47512724-47512743 Msa0952630:intron 15.0%
!!! TTTTGTTATTTTCTTTTTCA+GGG + chr6_3:47512725-47512744 Msa0952630:intron 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_3:47513236-47513255 Msa0952630:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_3:47513237-47513256 Msa0952630:three_prime_UTR 15.0%
!! AAATTGGAAAAATTGAGAAA+TGG - chr6_3:47512124-47512143 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_3:47512156-47512175 None:intergenic 20.0%
!!! ACTACTCTTTTAATTTTTCA+TGG + chr6_3:47512281-47512300 Msa0952630:intron 20.0%
!!! TTTGTTATTTTCTTTTTCAG+GGG + chr6_3:47512726-47512745 Msa0952630:intron 20.0%
!! TTGTAATAGTAATAAGGATA+TGG - chr6_3:47512991-47513010 None:intergenic 20.0%
!!! ACAGTTTTGTAATAGTAATA+AGG - chr6_3:47512997-47513016 None:intergenic 20.0%
!! TTATTACTATTACAAAACTG+TGG + chr6_3:47512996-47513015 Msa0952630:CDS 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_3:47513154-47513173 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+AGG + chr6_3:47513196-47513215 Msa0952630:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_3:47513238-47513257 Msa0952630:three_prime_UTR 20.0%
!! AAATTGGAAAAATTGAGAAA+TGG - chr6_3:47512124-47512143 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_3:47512156-47512175 None:intergenic 20.0%
!!! ACTACTCTTTTAATTTTTCA+TGG + chr6_3:47512281-47512300 Msa0952630:intron 20.0%
!!! TTTGTTATTTTCTTTTTCAG+GGG + chr6_3:47512726-47512745 Msa0952630:intron 20.0%
!! TTGTAATAGTAATAAGGATA+TGG - chr6_3:47512991-47513010 None:intergenic 20.0%
!!! ACAGTTTTGTAATAGTAATA+AGG - chr6_3:47512997-47513016 None:intergenic 20.0%
!! TTATTACTATTACAAAACTG+TGG + chr6_3:47512996-47513015 Msa0952630:CDS 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_3:47513154-47513173 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+AGG + chr6_3:47513196-47513215 Msa0952630:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_3:47513238-47513257 Msa0952630:three_prime_UTR 20.0%
! AATACTGGCAACAAAAAAAA+AGG - chr6_3:47512058-47512077 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_3:47512150-47512169 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_3:47512151-47512170 None:intergenic 25.0%
!! TTCCCTTTTGAATATTCAAT+TGG + chr6_3:47512256-47512275 Msa0952630:intron 25.0%
! CTCCAATTGAATATTCAAAA+GGG - chr6_3:47512261-47512280 None:intergenic 25.0%
! TCTCCAATTGAATATTCAAA+AGG - chr6_3:47512262-47512281 None:intergenic 25.0%
!! TCAAACAAAGTCACTTATTT+TGG + chr6_3:47512637-47512656 Msa0952630:intron 25.0%
!!! CAAACAAAGTCACTTATTTT+GGG + chr6_3:47512638-47512657 Msa0952630:intron 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_3:47513164-47513183 Msa0952630:three_prime_UTR 25.0%
! AAAAAAAGGATGTTGAAGAA+GGG + chr6_3:47513210-47513229 Msa0952630:three_prime_UTR 25.0%
! TACTCTGTATTCAAAAATGT+GGG + chr6_3:47513295-47513314 Msa0952630:three_prime_UTR 25.0%
! AATACTGGCAACAAAAAAAA+AGG - chr6_3:47512058-47512077 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_3:47512150-47512169 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_3:47512151-47512170 None:intergenic 25.0%
!! TTCCCTTTTGAATATTCAAT+TGG + chr6_3:47512256-47512275 Msa0952630:intron 25.0%
! CTCCAATTGAATATTCAAAA+GGG - chr6_3:47512261-47512280 None:intergenic 25.0%
! TCTCCAATTGAATATTCAAA+AGG - chr6_3:47512262-47512281 None:intergenic 25.0%
!! TCAAACAAAGTCACTTATTT+TGG + chr6_3:47512637-47512656 Msa0952630:intron 25.0%
!!! CAAACAAAGTCACTTATTTT+GGG + chr6_3:47512638-47512657 Msa0952630:intron 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_3:47513164-47513183 Msa0952630:three_prime_UTR 25.0%
! AAAAAAAGGATGTTGAAGAA+GGG + chr6_3:47513210-47513229 Msa0952630:three_prime_UTR 25.0%
! TACTCTGTATTCAAAAATGT+GGG + chr6_3:47513295-47513314 Msa0952630:three_prime_UTR 25.0%
!! CAAAGTTTGAGATCAAGTTT+TGG + chr6_3:47512191-47512210 Msa0952630:intron 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_3:47512342-47512361 Msa0952630:intron 30.0%
ATTCAACATCGTATATACGA+TGG + chr6_3:47512584-47512603 Msa0952630:intron 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_3:47512775-47512794 Msa0952630:CDS 30.0%
GAAAGAAGAACCAAAGAAAA+AGG + chr6_3:47512900-47512919 Msa0952630:CDS 30.0%
CTTAGCTTAGATAAGAGAAA+CGG - chr6_3:47513190-47513209 None:intergenic 30.0%
GAAAAAAAGGATGTTGAAGA+AGG + chr6_3:47513209-47513228 Msa0952630:three_prime_UTR 30.0%
CTACTCTGTATTCAAAAATG+TGG + chr6_3:47513294-47513313 Msa0952630:three_prime_UTR 30.0%
!! CAAAGTTTGAGATCAAGTTT+TGG + chr6_3:47512191-47512210 Msa0952630:intron 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_3:47512342-47512361 Msa0952630:intron 30.0%
ATTCAACATCGTATATACGA+TGG + chr6_3:47512584-47512603 Msa0952630:intron 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_3:47512775-47512794 Msa0952630:CDS 30.0%
GAAAGAAGAACCAAAGAAAA+AGG + chr6_3:47512900-47512919 Msa0952630:CDS 30.0%
CTTAGCTTAGATAAGAGAAA+CGG - chr6_3:47513190-47513209 None:intergenic 30.0%
GAAAAAAAGGATGTTGAAGA+AGG + chr6_3:47513209-47513228 Msa0952630:three_prime_UTR 30.0%
CTACTCTGTATTCAAAAATG+TGG + chr6_3:47513294-47513313 Msa0952630:three_prime_UTR 30.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_3:47512020-47512039 Msa0952630:exon 35.0%
TCATCATTAGGAGAGAATAC+TGG - chr6_3:47512073-47512092 None:intergenic 35.0%
AACATGGAAAGGGACAAAAT+TGG - chr6_3:47512140-47512159 None:intergenic 35.0%
AGACATAGATACTGTTCATG+TGG + chr6_3:47512798-47512817 Msa0952630:CDS 35.0%
ATAGATACTGTTCATGTGGT+GGG + chr6_3:47512802-47512821 Msa0952630:CDS 35.0%
CATGCTGAAATAGTTTCTGT+TGG + chr6_3:47512844-47512863 Msa0952630:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_3:47512875-47512894 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTTTCTT+TGG - chr6_3:47512913-47512932 None:intergenic 35.0%
AAAGGACCCAAAAGAAGAAT+TGG + chr6_3:47512918-47512937 Msa0952630:CDS 35.0%
! GATCAGCCAATTCTTCTTTT+GGG - chr6_3:47512927-47512946 None:intergenic 35.0%
! AGATCAGCCAATTCTTCTTT+TGG - chr6_3:47512928-47512947 None:intergenic 35.0%
TAACAAATAACACACCCACT+TGG - chr6_3:47513030-47513049 None:intergenic 35.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_3:47512020-47512039 Msa0952630:exon 35.0%
TCATCATTAGGAGAGAATAC+TGG - chr6_3:47512073-47512092 None:intergenic 35.0%
AACATGGAAAGGGACAAAAT+TGG - chr6_3:47512140-47512159 None:intergenic 35.0%
AGACATAGATACTGTTCATG+TGG + chr6_3:47512798-47512817 Msa0952630:CDS 35.0%
ATAGATACTGTTCATGTGGT+GGG + chr6_3:47512802-47512821 Msa0952630:CDS 35.0%
CATGCTGAAATAGTTTCTGT+TGG + chr6_3:47512844-47512863 Msa0952630:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_3:47512875-47512894 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTTTCTT+TGG - chr6_3:47512913-47512932 None:intergenic 35.0%
AAAGGACCCAAAAGAAGAAT+TGG + chr6_3:47512918-47512937 Msa0952630:CDS 35.0%
! GATCAGCCAATTCTTCTTTT+GGG - chr6_3:47512927-47512946 None:intergenic 35.0%
! AGATCAGCCAATTCTTCTTT+TGG - chr6_3:47512928-47512947 None:intergenic 35.0%
TAACAAATAACACACCCACT+TGG - chr6_3:47513030-47513049 None:intergenic 35.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_3:47512001-47512020 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_3:47512394-47512413 Msa0952630:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_3:47512401-47512420 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_3:47512403-47512422 Msa0952630:intron 40.0%
! TGTATCTGGTCTTTCAGGTA+TGG + chr6_3:47512408-47512427 Msa0952630:intron 40.0%
CATAGATACTGTTCATGTGG+TGG + chr6_3:47512801-47512820 Msa0952630:CDS 40.0%
! TTCATGTGGTGGGAAAGTTA+AGG + chr6_3:47512812-47512831 Msa0952630:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_3:47512867-47512886 Msa0952630:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_3:47512871-47512890 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_3:47512870-47512889 Msa0952630:CDS 40.0%
AGAATTGGCTGATCTTGTGA+AGG + chr6_3:47512933-47512952 Msa0952630:CDS 40.0%
GAGAACATGAGAAGAAGTTG+TGG + chr6_3:47513096-47513115 Msa0952630:three_prime_UTR 40.0%
CATGAGAAGAAGTTGTGGTT+TGG + chr6_3:47513101-47513120 Msa0952630:three_prime_UTR 40.0%
! AGAAGAAGTTGTGGTTTGGA+GGG + chr6_3:47513105-47513124 Msa0952630:three_prime_UTR 40.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_3:47512001-47512020 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_3:47512394-47512413 Msa0952630:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_3:47512401-47512420 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_3:47512403-47512422 Msa0952630:intron 40.0%
! TGTATCTGGTCTTTCAGGTA+TGG + chr6_3:47512408-47512427 Msa0952630:intron 40.0%
CATAGATACTGTTCATGTGG+TGG + chr6_3:47512801-47512820 Msa0952630:CDS 40.0%
! TTCATGTGGTGGGAAAGTTA+AGG + chr6_3:47512812-47512831 Msa0952630:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_3:47512867-47512886 Msa0952630:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_3:47512871-47512890 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_3:47512870-47512889 Msa0952630:CDS 40.0%
AGAATTGGCTGATCTTGTGA+AGG + chr6_3:47512933-47512952 Msa0952630:CDS 40.0%
GAGAACATGAGAAGAAGTTG+TGG + chr6_3:47513096-47513115 Msa0952630:three_prime_UTR 40.0%
CATGAGAAGAAGTTGTGGTT+TGG + chr6_3:47513101-47513120 Msa0952630:three_prime_UTR 40.0%
! AGAAGAAGTTGTGGTTTGGA+GGG + chr6_3:47513105-47513124 Msa0952630:three_prime_UTR 40.0%
! TTGTGTGCGAGTGTGTTTTG+AGG - chr6_3:47511969-47511988 None:intergenic 45.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_3:47512753-47512772 Msa0952630:CDS 45.0%
! GAGAAGAAGTTGTGGTTTGG+AGG + chr6_3:47513104-47513123 Msa0952630:three_prime_UTR 45.0%
! TTGTGTGCGAGTGTGTTTTG+AGG - chr6_3:47511969-47511988 None:intergenic 45.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_3:47512753-47512772 Msa0952630:CDS 45.0%
! GAGAAGAAGTTGTGGTTTGG+AGG + chr6_3:47513104-47513123 Msa0952630:three_prime_UTR 45.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_3:47512744-47512763 Msa0952630:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_3:47513012-47513031 Msa0952630:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_3:47513013-47513032 Msa0952630:CDS 50.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_3:47512744-47512763 Msa0952630:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_3:47513012-47513031 Msa0952630:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_3:47513013-47513032 Msa0952630:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 47511951 47513331 47511951 ID=Msa0952630;Name=Msa0952630
chr6_3 mRNA 47511951 47513331 47511951 ID=Msa0952630-mRNA-1;Parent=Msa0952630;Name=Msa0952630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=85|0.5|0.66|1|1|1|3|281|125
chr6_3 exon 47511951 47512041 47511951 ID=Msa0952630-mRNA-1:exon:10439;Parent=Msa0952630-mRNA-1
chr6_3 exon 47512349 47512415 47512349 ID=Msa0952630-mRNA-1:exon:10440;Parent=Msa0952630-mRNA-1
chr6_3 exon 47512746 47513331 47512746 ID=Msa0952630-mRNA-1:exon:10441;Parent=Msa0952630-mRNA-1
chr6_3 five_prime_UTR 47511951 47512035 47511951 ID=Msa0952630-mRNA-1:five_prime_utr;Parent=Msa0952630-mRNA-1
chr6_3 CDS 47512036 47512041 47512036 ID=Msa0952630-mRNA-1:cds;Parent=Msa0952630-mRNA-1
chr6_3 CDS 47512349 47512415 47512349 ID=Msa0952630-mRNA-1:cds;Parent=Msa0952630-mRNA-1
chr6_3 CDS 47512746 47513050 47512746 ID=Msa0952630-mRNA-1:cds;Parent=Msa0952630-mRNA-1
chr6_3 three_prime_UTR 47513051 47513331 47513051 ID=Msa0952630-mRNA-1:three_prime_utr;Parent=Msa0952630-mRNA-1
Gene Sequence

>Msa0952630

ATGCAGAAAATAGTGCTAAAGGTAGAACTCTATGATGATAGAATCAAGAAAAAAGCCATGAAGACTGTATCTGGGGTTGAGTCTGTTTCAGTGGACATGAAGGATCAAAAACTGACATTAGTTGGAGACATAGATACTGTTCATGTGGTGGGAAAGTTAAGGAAACTATGTCATGCTGAAATAGTTTCTGTTGGACCAGCCAAAGAAGAGAAAAAGGAGGAAAAAAAGAAAGAAGAACCAAAGAAAAAGGACCCAAAAGAAGAATTGGCTGATCTTGTGAAGGCTTATGAAACATATTCTAATCAAATGAGACAACCATATCCTTATTACTATTACAAAACTGTGGAAGAGTCTCCAAGTGGGTGTGTTATTTGTTAA
Protein sequence

>Msa0952630

MQKIVLKVELYDDRIKKKAMKTVSGVESVSVDMKDQKLTLVGDIDTVHVVGKLRKLCHAEIVSVGPAKEEKKEEKKKEEPKKKDPKEELADLVKAYETYSNQMRQPYPYYYYKTVEESPSGCVIC*