AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888260 MtrunA17_Chr6g0469651 88.722 133 10 1 1 128 1 133 1.12e-61 185
Msa0888260 MtrunA17_Chr6g0469681 75.781 128 30 1 1 128 1 127 8.28e-54 165
Msa0888260 MtrunA17_Chr1g0202501 66.154 130 42 1 1 128 1 130 2.42e-43 138
Msa0888260 MtrunA17_Chr8g0387471 56.154 130 52 2 1 128 1 127 4.08e-40 130
Msa0888260 MtrunA17_Chr6g0469571 61.240 129 44 3 1 128 1 124 3.23e-38 125
Msa0888260 MtrunA17_Chr1g0202541 59.259 135 47 2 1 127 1 135 4.09e-38 125
Msa0888260 MtrunA17_Chr6g0469551 60.465 129 45 3 1 128 1 124 1.01e-37 124
Msa0888260 MtrunA17_Chr6g0469591 61.240 129 44 3 1 128 1 124 1.22e-37 124
Msa0888260 MtrunA17_Chr1g0202561 56.643 143 41 4 1 127 1 138 1.00e-34 117
Msa0888260 MtrunA17_Chr6g0469671 60.952 105 40 1 1 104 1 105 1.33e-33 113
Msa0888260 MtrunA17_Chr1g0202581 61.194 134 42 4 1 127 1 131 2.51e-33 113
Msa0888260 MtrunA17_Chr1g0204291 59.701 134 44 4 1 127 1 131 5.44e-33 112
Msa0888260 MtrunA17_Chr6g0469541 52.586 116 46 3 1 114 1 109 3.04e-32 110
Msa0888260 MtrunA17_Chr7g0233231 50.420 119 45 3 1 115 1 109 5.14e-31 106
Msa0888260 MtrunA17_Chr7g0233181 62.195 82 31 0 1 82 1 82 2.13e-30 105
Msa0888260 MtrunA17_Chr7g0233251 50.820 122 46 3 1 118 1 112 4.45e-30 104
Msa0888260 MtrunA17_Chr7g0233211 48.739 119 47 3 1 115 1 109 2.55e-29 102
Msa0888260 MtrunA17_Chr7g0233191 50.427 117 48 4 1 115 1 109 7.51e-29 101
Msa0888260 MtrunA17_Chr7g0233201 49.573 117 49 4 1 115 1 109 2.44e-28 100
Msa0888260 MtrunA17_Chr7g0248671 38.202 178 54 4 1 128 1 172 2.26e-19 79.0
Msa0888260 MtrunA17_Chr8g0348361 31.579 133 60 3 22 128 22 149 3.71e-15 67.4
Msa0888260 MtrunA17_Chr3g0120541 44.578 83 41 3 2 81 4 84 5.98e-13 60.8
Msa0888260 MtrunA17_Chr1g0203261 52.778 72 33 1 2 72 4 75 1.90e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888260 AT1G01490.1 56.338 71 30 1 1 70 1 71 6.76e-20 80.9
Msa0888260 AT1G01490.2 56.338 71 30 1 1 70 1 71 6.76e-20 80.9
Msa0888260 AT5G52740.1 38.889 126 67 2 1 126 1 116 3.41e-19 77.4
Msa0888260 AT1G01490.4 56.522 69 29 1 3 70 30 98 1.07e-18 78.2
Msa0888260 AT5G52760.1 38.583 127 66 5 5 127 7 125 2.20e-16 70.5
Msa0888260 AT5G52750.1 47.692 65 34 0 3 67 5 69 5.43e-14 64.3
Msa0888260 AT5G52730.1 36.082 97 56 5 4 97 44 137 9.10e-12 59.7
Msa0888260 AT5G52770.1 51.923 52 25 0 16 67 16 67 6.18e-11 55.8
Msa0888260 AT5G52740.2 36.275 102 55 2 25 126 11 102 8.56e-11 55.5

Find 32 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACATTGAAATATTATTTA+TGG 0.078625 6_1:+52522094 Msa0888260:exon
AAGACTGTATCTGGTCTTTC+AGG 0.200126 6_1:+52521502 Msa0888260:CDS
AGATCAGCCAATTCCTCTTT+TGG 0.226013 6_1:-52521969 None:intergenic
ACCAGCCAAAGAAGAGAAAA+AGG 0.297190 6_1:+52521911 Msa0888260:CDS
ACAAGAAAAGAAGAATAAAA+AGG 0.310585 6_1:-52522195 None:intergenic
TTGTAATAGTAATAAGGATA+TGG 0.319654 6_1:-52522032 None:intergenic
GAAAGAAGAACCAAAGATAA+AGG 0.342288 6_1:+52521944 Msa0888260:CDS
AAGACCAGATACAGTCTTCA+TGG 0.391977 6_1:-52521497 None:intergenic
AAAGGACCCAAAAGAGGAAT+TGG 0.394432 6_1:+52521962 Msa0888260:CDS
AAAGCCATGAAGACTGTATC+TGG 0.395060 6_1:+52521493 Msa0888260:CDS
TGAGAACATGAGAAGAAGTT+GGG 0.404185 6_1:+52522139 Msa0888260:three_prime_UTR
TGAAACATATTATAATCAAA+TGG 0.427263 6_1:+52522004 Msa0888260:CDS
ATGAGAACATGAGAAGAAGT+TGG 0.446034 6_1:+52522138 Msa0888260:three_prime_UTR
TTGACAGAAAATAGTGCTAA+AGG 0.490233 6_1:+52521441 Msa0888260:intron
AGGGGTTGAGTCTGTTTCAG+TGG 0.493775 6_1:+52521788 Msa0888260:intron
GAAACATATTATAATCAAAT+GGG 0.499577 6_1:+52522005 Msa0888260:CDS
GTCTGTTTCAGTGGACATGA+AGG 0.510268 6_1:+52521797 Msa0888260:CDS
CTAGCTTCAAATCAATATGC+AGG 0.524283 6_1:+52521118 Msa0888260:exon
GTGAGTAGTGTTGCTAAAGA+AGG 0.533667 6_1:-52521096 None:intergenic
CATGCTGAAATACTTTCAGT+TGG 0.539604 6_1:+52521888 Msa0888260:CDS
AAAGATAAAGGACCCAAAAG+AGG 0.573203 6_1:+52521956 Msa0888260:CDS
GGAATTGGCTGATCTTGTGA+AGG 0.579782 6_1:+52521977 Msa0888260:CDS
TAACAAATAACACACCCACT+TGG 0.580370 6_1:-52522071 None:intergenic
TTGATGTGGTGGGAAAGTTA+AGG 0.592037 6_1:+52521856 Msa0888260:CDS
CATAGATACTGTTGATGTGG+TGG 0.595234 6_1:+52521845 Msa0888260:CDS
GAGAACATGAGAAGAAGTTG+GGG 0.598770 6_1:+52522140 Msa0888260:three_prime_UTR
TTATTACTATTACAAAACTG+TGG 0.633353 6_1:+52522040 Msa0888260:CDS
ATAGATACTGTTGATGTGGT+GGG 0.650446 6_1:+52521846 Msa0888260:CDS
CTGTGGAAGAGTCTCCAAGT+GGG 0.681825 6_1:+52522057 Msa0888260:CDS
AGACATAGATACTGTTGATG+TGG 0.701316 6_1:+52521842 Msa0888260:CDS
ACTGTGGAAGAGTCTCCAAG+TGG 0.713975 6_1:+52522056 Msa0888260:CDS
AGAACATGAGAAGAAGTTGG+GGG 0.716352 6_1:+52522141 Msa0888260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_1:52521332-52521351 None:intergenic 10.0%
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_1:52521332-52521351 None:intergenic 10.0%
!! AAATTTCAAAAATTGAGAAA+TGG - chr6_1:52521220-52521239 None:intergenic 15.0%
!!! TTTTTGTTATTTTCATTTTC+AGG + chr6_1:52521768-52521787 Msa0888260:intron 15.0%
!!! TTTTGTTATTTTCATTTTCA+GGG + chr6_1:52521769-52521788 Msa0888260:intron 15.0%
!! TGAAACATATTATAATCAAA+TGG + chr6_1:52522004-52522023 Msa0888260:CDS 15.0%
!! GAAACATATTATAATCAAAT+GGG + chr6_1:52522005-52522024 Msa0888260:CDS 15.0%
!! AGACATTGAAATATTATTTA+TGG + chr6_1:52522094-52522113 Msa0888260:exon 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_1:52522284-52522303 Msa0888260:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_1:52522285-52522304 Msa0888260:three_prime_UTR 15.0%
!! AAATTTCAAAAATTGAGAAA+TGG - chr6_1:52521220-52521239 None:intergenic 15.0%
!!! TTTTTGTTATTTTCATTTTC+AGG + chr6_1:52521768-52521787 Msa0888260:intron 15.0%
!!! TTTTGTTATTTTCATTTTCA+GGG + chr6_1:52521769-52521788 Msa0888260:intron 15.0%
!! TGAAACATATTATAATCAAA+TGG + chr6_1:52522004-52522023 Msa0888260:CDS 15.0%
!! GAAACATATTATAATCAAAT+GGG + chr6_1:52522005-52522024 Msa0888260:CDS 15.0%
!! AGACATTGAAATATTATTTA+TGG + chr6_1:52522094-52522113 Msa0888260:exon 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_1:52522284-52522303 Msa0888260:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_1:52522285-52522304 Msa0888260:three_prime_UTR 15.0%
!!! ATGTTATTGATTTCATCATT+AGG - chr6_1:52521184-52521203 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_1:52521252-52521271 None:intergenic 20.0%
!! TATAATTTGATTACCAAAAC+TGG - chr6_1:52521307-52521326 None:intergenic 20.0%
!!! GATTATCTTTGAATTTTTCA+TGG + chr6_1:52521380-52521399 Msa0888260:intron 20.0%
!!! TTTGTTATTTTCATTTTCAG+GGG + chr6_1:52521770-52521789 Msa0888260:intron 20.0%
!! TTGTAATAGTAATAAGGATA+TGG - chr6_1:52522035-52522054 None:intergenic 20.0%
!!! ACAGTTTTGTAATAGTAATA+AGG - chr6_1:52522041-52522060 None:intergenic 20.0%
!! TTATTACTATTACAAAACTG+TGG + chr6_1:52522040-52522059 Msa0888260:CDS 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_1:52522198-52522217 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+GGG + chr6_1:52522245-52522264 Msa0888260:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_1:52522286-52522305 Msa0888260:three_prime_UTR 20.0%
!!! ATGTTATTGATTTCATCATT+AGG - chr6_1:52521184-52521203 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_1:52521252-52521271 None:intergenic 20.0%
!! TATAATTTGATTACCAAAAC+TGG - chr6_1:52521307-52521326 None:intergenic 20.0%
!!! GATTATCTTTGAATTTTTCA+TGG + chr6_1:52521380-52521399 Msa0888260:intron 20.0%
!!! TTTGTTATTTTCATTTTCAG+GGG + chr6_1:52521770-52521789 Msa0888260:intron 20.0%
!! TTGTAATAGTAATAAGGATA+TGG - chr6_1:52522035-52522054 None:intergenic 20.0%
!!! ACAGTTTTGTAATAGTAATA+AGG - chr6_1:52522041-52522060 None:intergenic 20.0%
!! TTATTACTATTACAAAACTG+TGG + chr6_1:52522040-52522059 Msa0888260:CDS 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_1:52522198-52522217 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+GGG + chr6_1:52522245-52522264 Msa0888260:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_1:52522286-52522305 Msa0888260:three_prime_UTR 20.0%
! AAACAGGCAACAAAAAAAAA+AGG - chr6_1:52521156-52521175 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_1:52521246-52521265 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_1:52521247-52521266 None:intergenic 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_1:52522208-52522227 Msa0888260:three_prime_UTR 25.0%
! CTTATCTAAGCTAAGAAAAA+AGG + chr6_1:52522244-52522263 Msa0888260:three_prime_UTR 25.0%
! AAACAGGCAACAAAAAAAAA+AGG - chr6_1:52521156-52521175 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_1:52521246-52521265 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_1:52521247-52521266 None:intergenic 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_1:52522208-52522227 Msa0888260:three_prime_UTR 25.0%
! CTTATCTAAGCTAAGAAAAA+AGG + chr6_1:52522244-52522263 Msa0888260:three_prime_UTR 25.0%
!! TTCCCTTTTGAGTATTCAAT+TGG + chr6_1:52521356-52521375 Msa0888260:intron 30.0%
CTCCAATTGAATACTCAAAA+GGG - chr6_1:52521361-52521380 None:intergenic 30.0%
TCTCCAATTGAATACTCAAA+AGG - chr6_1:52521362-52521381 None:intergenic 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_1:52521441-52521460 Msa0888260:intron 30.0%
GACGATCTTATATAAGATGT+TGG - chr6_1:52521687-52521706 None:intergenic 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_1:52521819-52521838 Msa0888260:CDS 30.0%
GAAAGAAGAACCAAAGATAA+AGG + chr6_1:52521944-52521963 Msa0888260:CDS 30.0%
CACTCTGTATTCAAAAAATG+TGG + chr6_1:52522342-52522361 Msa0888260:three_prime_UTR 30.0%
!! TTCCCTTTTGAGTATTCAAT+TGG + chr6_1:52521356-52521375 Msa0888260:intron 30.0%
CTCCAATTGAATACTCAAAA+GGG - chr6_1:52521361-52521380 None:intergenic 30.0%
TCTCCAATTGAATACTCAAA+AGG - chr6_1:52521362-52521381 None:intergenic 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_1:52521441-52521460 Msa0888260:intron 30.0%
GACGATCTTATATAAGATGT+TGG - chr6_1:52521687-52521706 None:intergenic 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_1:52521819-52521838 Msa0888260:CDS 30.0%
GAAAGAAGAACCAAAGATAA+AGG + chr6_1:52521944-52521963 Msa0888260:CDS 30.0%
CACTCTGTATTCAAAAAATG+TGG + chr6_1:52522342-52522361 Msa0888260:three_prime_UTR 30.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_1:52521118-52521137 Msa0888260:exon 35.0%
TCATCATTAGGAGAGAAAAC+AGG - chr6_1:52521172-52521191 None:intergenic 35.0%
!! CAAAGTTTGAGATCCAGTTT+TGG + chr6_1:52521291-52521310 Msa0888260:intron 35.0%
AGACATAGATACTGTTGATG+TGG + chr6_1:52521842-52521861 Msa0888260:CDS 35.0%
ATAGATACTGTTGATGTGGT+GGG + chr6_1:52521846-52521865 Msa0888260:CDS 35.0%
CATGCTGAAATACTTTCAGT+TGG + chr6_1:52521888-52521907 Msa0888260:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_1:52521919-52521938 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTATCTT+TGG - chr6_1:52521957-52521976 None:intergenic 35.0%
AAAGATAAAGGACCCAAAAG+AGG + chr6_1:52521956-52521975 Msa0888260:CDS 35.0%
TAACAAATAACACACCCACT+TGG - chr6_1:52522074-52522093 None:intergenic 35.0%
ATGAGAACATGAGAAGAAGT+TGG + chr6_1:52522138-52522157 Msa0888260:three_prime_UTR 35.0%
TGAGAACATGAGAAGAAGTT+GGG + chr6_1:52522139-52522158 Msa0888260:three_prime_UTR 35.0%
AGAAAAAAGGGATGTCACAA+AGG + chr6_1:52522257-52522276 Msa0888260:three_prime_UTR 35.0%
GAAAAAAGGGATGTCACAAA+GGG + chr6_1:52522258-52522277 Msa0888260:three_prime_UTR 35.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_1:52521118-52521137 Msa0888260:exon 35.0%
TCATCATTAGGAGAGAAAAC+AGG - chr6_1:52521172-52521191 None:intergenic 35.0%
!! CAAAGTTTGAGATCCAGTTT+TGG + chr6_1:52521291-52521310 Msa0888260:intron 35.0%
AGACATAGATACTGTTGATG+TGG + chr6_1:52521842-52521861 Msa0888260:CDS 35.0%
ATAGATACTGTTGATGTGGT+GGG + chr6_1:52521846-52521865 Msa0888260:CDS 35.0%
CATGCTGAAATACTTTCAGT+TGG + chr6_1:52521888-52521907 Msa0888260:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_1:52521919-52521938 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTATCTT+TGG - chr6_1:52521957-52521976 None:intergenic 35.0%
AAAGATAAAGGACCCAAAAG+AGG + chr6_1:52521956-52521975 Msa0888260:CDS 35.0%
TAACAAATAACACACCCACT+TGG - chr6_1:52522074-52522093 None:intergenic 35.0%
ATGAGAACATGAGAAGAAGT+TGG + chr6_1:52522138-52522157 Msa0888260:three_prime_UTR 35.0%
TGAGAACATGAGAAGAAGTT+GGG + chr6_1:52522139-52522158 Msa0888260:three_prime_UTR 35.0%
AGAAAAAAGGGATGTCACAA+AGG + chr6_1:52522257-52522276 Msa0888260:three_prime_UTR 35.0%
GAAAAAAGGGATGTCACAAA+GGG + chr6_1:52522258-52522277 Msa0888260:three_prime_UTR 35.0%
! TTGTGTGTGAGTGTGTTTTG+AGG - chr6_1:52521067-52521086 None:intergenic 40.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_1:52521099-52521118 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_1:52521493-52521512 Msa0888260:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_1:52521500-52521519 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_1:52521502-52521521 Msa0888260:CDS 40.0%
CATAGATACTGTTGATGTGG+TGG + chr6_1:52521845-52521864 Msa0888260:CDS 40.0%
! TTGATGTGGTGGGAAAGTTA+AGG + chr6_1:52521856-52521875 Msa0888260:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_1:52521911-52521930 Msa0888260:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_1:52521915-52521934 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_1:52521914-52521933 Msa0888260:CDS 40.0%
AAAGGACCCAAAAGAGGAAT+TGG + chr6_1:52521962-52521981 Msa0888260:CDS 40.0%
! GATCAGCCAATTCCTCTTTT+GGG - chr6_1:52521971-52521990 None:intergenic 40.0%
! AGATCAGCCAATTCCTCTTT+TGG - chr6_1:52521972-52521991 None:intergenic 40.0%
GAGAACATGAGAAGAAGTTG+GGG + chr6_1:52522140-52522159 Msa0888260:three_prime_UTR 40.0%
AGAACATGAGAAGAAGTTGG+GGG + chr6_1:52522141-52522160 Msa0888260:three_prime_UTR 40.0%
! TTGTGTGTGAGTGTGTTTTG+AGG - chr6_1:52521067-52521086 None:intergenic 40.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_1:52521099-52521118 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_1:52521493-52521512 Msa0888260:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_1:52521500-52521519 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_1:52521502-52521521 Msa0888260:CDS 40.0%
CATAGATACTGTTGATGTGG+TGG + chr6_1:52521845-52521864 Msa0888260:CDS 40.0%
! TTGATGTGGTGGGAAAGTTA+AGG + chr6_1:52521856-52521875 Msa0888260:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_1:52521911-52521930 Msa0888260:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_1:52521915-52521934 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_1:52521914-52521933 Msa0888260:CDS 40.0%
AAAGGACCCAAAAGAGGAAT+TGG + chr6_1:52521962-52521981 Msa0888260:CDS 40.0%
! GATCAGCCAATTCCTCTTTT+GGG - chr6_1:52521971-52521990 None:intergenic 40.0%
! AGATCAGCCAATTCCTCTTT+TGG - chr6_1:52521972-52521991 None:intergenic 40.0%
GAGAACATGAGAAGAAGTTG+GGG + chr6_1:52522140-52522159 Msa0888260:three_prime_UTR 40.0%
AGAACATGAGAAGAAGTTGG+GGG + chr6_1:52522141-52522160 Msa0888260:three_prime_UTR 40.0%
GTACATTGACGTGTGTGCAA+CGG - chr6_1:52521590-52521609 None:intergenic 45.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_1:52521797-52521816 Msa0888260:CDS 45.0%
GGAATTGGCTGATCTTGTGA+AGG + chr6_1:52521977-52521996 Msa0888260:CDS 45.0%
GTACATTGACGTGTGTGCAA+CGG - chr6_1:52521590-52521609 None:intergenic 45.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_1:52521797-52521816 Msa0888260:CDS 45.0%
GGAATTGGCTGATCTTGTGA+AGG + chr6_1:52521977-52521996 Msa0888260:CDS 45.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_1:52521788-52521807 Msa0888260:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_1:52522056-52522075 Msa0888260:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_1:52522057-52522076 Msa0888260:CDS 50.0%
CATGAGAAGAAGTTGGGGGT+TGG + chr6_1:52522145-52522164 Msa0888260:three_prime_UTR 50.0%
AGAAGAAGTTGGGGGTTGGA+GGG + chr6_1:52522149-52522168 Msa0888260:three_prime_UTR 50.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_1:52521788-52521807 Msa0888260:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_1:52522056-52522075 Msa0888260:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_1:52522057-52522076 Msa0888260:CDS 50.0%
CATGAGAAGAAGTTGGGGGT+TGG + chr6_1:52522145-52522164 Msa0888260:three_prime_UTR 50.0%
AGAAGAAGTTGGGGGTTGGA+GGG + chr6_1:52522149-52522168 Msa0888260:three_prime_UTR 50.0%
GAGAAGAAGTTGGGGGTTGG+AGG + chr6_1:52522148-52522167 Msa0888260:three_prime_UTR 55.0%
GAGAAGAAGTTGGGGGTTGG+AGG + chr6_1:52522148-52522167 Msa0888260:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 52521049 52522379 52521049 ID=Msa0888260;Name=Msa0888260
chr6_1 mRNA 52521049 52522379 52521049 ID=Msa0888260-mRNA-1;Parent=Msa0888260;Name=Msa0888260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|1|1|1|1|1|3|285|128
chr6_1 exon 52521049 52521139 52521049 ID=Msa0888260-mRNA-1:exon:10552;Parent=Msa0888260-mRNA-1
chr6_1 exon 52521448 52521523 52521448 ID=Msa0888260-mRNA-1:exon:10553;Parent=Msa0888260-mRNA-1
chr6_1 exon 52521790 52522379 52521790 ID=Msa0888260-mRNA-1:exon:10554;Parent=Msa0888260-mRNA-1
chr6_1 five_prime_UTR 52521049 52521133 52521049 ID=Msa0888260-mRNA-1:five_prime_utr;Parent=Msa0888260-mRNA-1
chr6_1 CDS 52521134 52521139 52521134 ID=Msa0888260-mRNA-1:cds;Parent=Msa0888260-mRNA-1
chr6_1 CDS 52521448 52521523 52521448 ID=Msa0888260-mRNA-1:cds;Parent=Msa0888260-mRNA-1
chr6_1 CDS 52521790 52522094 52521790 ID=Msa0888260-mRNA-1:cds;Parent=Msa0888260-mRNA-1
chr6_1 three_prime_UTR 52522095 52522379 52522095 ID=Msa0888260-mRNA-1:three_prime_utr;Parent=Msa0888260-mRNA-1
Gene Sequence

>Msa0888260

ATGCAGAAAATAGTGCTAAAGGTAGAACTCTATGATGATAGAATCAAGAAAAAAGCCATGAAGACTGTATCTGGTCTTTCAGGGGTTGAGTCTGTTTCAGTGGACATGAAGGATCAAAAACTGACATTAGTTGGAGACATAGATACTGTTGATGTGGTGGGAAAGTTAAGGAAACTATGTCATGCTGAAATACTTTCAGTTGGACCAGCCAAAGAAGAGAAAAAGGAGGAAAAAAAGAAAGAAGAACCAAAGATAAAGGACCCAAAAGAGGAATTGGCTGATCTTGTGAAGGCTTATGAAACATATTATAATCAAATGGGACAACCATATCCTTATTACTATTACAAAACTGTGGAAGAGTCTCCAAGTGGGTGTGTTATTTGTTAA

Protein sequence

>Msa0888260

MQKIVLKVELYDDRIKKKAMKTVSGLSGVESVSVDMKDQKLTLVGDIDTVDVVGKLRKLCHAEILSVGPAKEEKKEEKKKEEPKIKDPKEELADLVKAYETYYNQMGQPYPYYYYKTVEESPSGCVIC*