Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342410 | XP_003594839.1 | 96.907 | 97 | 3 | 0 | 2 | 98 | 61 | 157 | 3.57e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342410 | sp|Q06931|ABR17_PEA | 84.375 | 96 | 15 | 0 | 3 | 98 | 62 | 157 | 4.89e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037570 | Msa0342410 | -0.811221 | 7.802641e-51 | -8.615850e-47 |
| Msa0043980 | Msa0342410 | 0.808904 | 2.462571e-50 | -8.615850e-47 |
| Msa0044000 | Msa0342410 | 0.830486 | 2.859134e-55 | -8.615850e-47 |
| Msa0044260 | Msa0342410 | 0.819503 | 1.122658e-52 | -8.615850e-47 |
| Msa0044330 | Msa0342410 | 0.827334 | 1.656544e-54 | -8.615850e-47 |
| Msa0064300 | Msa0342410 | 0.804543 | 2.054202e-49 | -8.615850e-47 |
| Msa0068740 | Msa0342410 | -0.805787 | 1.127604e-49 | -8.615850e-47 |
| Msa0071250 | Msa0342410 | 0.809692 | 1.668506e-50 | -8.615850e-47 |
| Msa0076320 | Msa0342410 | 0.830913 | 2.246283e-55 | -8.615850e-47 |
| Msa0079180 | Msa0342410 | 0.812645 | 3.820157e-51 | -8.615850e-47 |
| Msa0127800 | Msa0342410 | 0.809243 | 2.082983e-50 | -8.615850e-47 |
| Msa0135410 | Msa0342410 | 0.812099 | 5.028227e-51 | -8.615850e-47 |
| Msa0200850 | Msa0342410 | 0.805267 | 1.449908e-49 | -8.615850e-47 |
| Msa0216530 | Msa0342410 | 0.804135 | 2.497488e-49 | -8.615850e-47 |
| Msa0217680 | Msa0342410 | 0.832638 | 8.432420e-56 | -8.615850e-47 |
| Msa0243480 | Msa0342410 | 0.823132 | 1.632570e-53 | -8.615850e-47 |
| Msa0257500 | Msa0342410 | 0.827803 | 1.278494e-54 | -8.615850e-47 |
| Msa0287410 | Msa0342410 | 0.814634 | 1.394388e-51 | -8.615850e-47 |
| Msa0305410 | Msa0342410 | 0.819225 | 1.298951e-52 | -8.615850e-47 |
| Msa0316390 | Msa0342410 | 0.802051 | 6.738320e-49 | -8.615850e-47 |
| Msa0320200 | Msa0342410 | 0.884535 | 1.765802e-71 | -8.615850e-47 |
| Msa0321080 | Msa0342410 | 0.837534 | 4.912285e-57 | -8.615850e-47 |
| Msa0335060 | Msa0342410 | 0.804492 | 2.104659e-49 | -8.615850e-47 |
| Msa0342410 | Msa0363790 | 0.806505 | 7.963208e-50 | -8.615850e-47 |
| Msa0342410 | Msa0383800 | 0.809671 | 1.686317e-50 | -8.615850e-47 |
| Msa0342410 | Msa0386420 | 0.807413 | 5.116215e-50 | -8.615850e-47 |
| Msa0342410 | Msa0394340 | 0.808188 | 3.502083e-50 | -8.615850e-47 |
| Msa0342410 | Msa0398670 | 0.806984 | 6.308624e-50 | -8.615850e-47 |
| Msa0342410 | Msa0412840 | 0.807844 | 4.144431e-50 | -8.615850e-47 |
| Msa0342410 | Msa0434180 | 0.815991 | 6.961918e-52 | -8.615850e-47 |
| Msa0342410 | Msa0455760 | 0.804928 | 1.706812e-49 | -8.615850e-47 |
| Msa0342410 | Msa0457960 | 0.816685 | 4.867889e-52 | -8.615850e-47 |
| Msa0342410 | Msa0542260 | 0.822856 | 1.893765e-53 | -8.615850e-47 |
| Msa0342410 | Msa0548240 | 0.812353 | 4.424558e-51 | -8.615850e-47 |
| Msa0342410 | Msa0608710 | 0.810750 | 9.869959e-51 | -8.615850e-47 |
| Msa0342410 | Msa0643350 | 0.815391 | 9.471040e-52 | -8.615850e-47 |
| Msa0342410 | Msa0649490 | 0.806824 | 6.816979e-50 | -8.615850e-47 |
| Msa0342410 | Msa0673460 | 0.823847 | 1.111024e-53 | -8.615850e-47 |
| Msa0342410 | Msa0711450 | 0.803291 | 3.739644e-49 | -8.615850e-47 |
| Msa0342410 | Msa0741400 | 0.803156 | 3.987213e-49 | -8.615850e-47 |
| Msa0342410 | Msa0750850 | 0.821449 | 4.012955e-53 | -8.615850e-47 |
| Msa0342410 | Msa0802010 | 0.806654 | 7.406699e-50 | -8.615850e-47 |
| Msa0342410 | Msa0820850 | 0.835716 | 1.427385e-56 | -8.615850e-47 |
| Msa0342410 | Msa0849040 | 0.802737 | 4.866654e-49 | -8.615850e-47 |
| Msa0342410 | Msa0858130 | 0.808672 | 2.761151e-50 | -8.615850e-47 |
| Msa0342410 | Msa0861130 | 0.829353 | 5.399043e-55 | -8.615850e-47 |
| Msa0342410 | Msa0888260 | 0.800397 | 1.468886e-48 | -8.615850e-47 |
| Msa0342410 | Msa0952630 | 0.813925 | 1.999999e-51 | -8.615850e-47 |
| Msa0342410 | Msa1034150 | 0.803361 | 3.615576e-49 | -8.615850e-47 |
| Msa0342410 | Msa1077130 | 0.848879 | 4.625596e-60 | -8.615850e-47 |
| Msa0342410 | Msa1077200 | 0.845805 | 3.229032e-59 | -8.615850e-47 |
| Msa0342410 | Msa1081790 | -0.802592 | 5.214429e-49 | -8.615850e-47 |
| Msa0342410 | Msa1117240 | 0.801623 | 8.250848e-49 | -8.615850e-47 |
| Msa0342410 | Msa1174040 | 0.805157 | 1.528811e-49 | -8.615850e-47 |
| Msa0342410 | Msa1176720 | 0.801722 | 7.875956e-49 | -8.615850e-47 |
| Msa0342410 | Msa1181250 | 0.826630 | 2.441655e-54 | -8.615850e-47 |
| Msa0342410 | Msa1181330 | 0.815369 | 9.575824e-52 | -8.615850e-47 |
| Msa0342410 | Msa1207310 | 0.807812 | 4.209009e-50 | -8.615850e-47 |
| Msa0342410 | Msa1208380 | 0.822225 | 2.654171e-53 | -8.615850e-47 |
| Msa0342410 | Msa1280320 | 0.821150 | 4.705262e-53 | -8.615850e-47 |
| Msa0342410 | Msa1331000 | 0.808378 | 3.189041e-50 | -8.615850e-47 |
| Msa0342410 | Msa1331320 | 0.814922 | 1.203954e-51 | -8.615850e-47 |
| Msa0342410 | Msa1358500 | 0.806089 | 9.742440e-50 | -8.615850e-47 |
| Msa0342410 | Msa1394380 | 0.802783 | 4.762545e-49 | -8.615850e-47 |
| Msa0342410 | Msa1403340 | 0.812146 | 4.910091e-51 | -8.615850e-47 |
| Msa0342410 | Msa1427230 | 0.800299 | 1.538608e-48 | -8.615850e-47 |
| Msa0342410 | Msa1444740 | 0.817173 | 3.783130e-52 | -8.615850e-47 |
| Msa0342410 | Msa1462290 | 0.804337 | 2.267609e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342410 | MtrunA17_Chr2g0295124 | 96.907 | 97 | 3 | 0 | 2 | 98 | 61 | 157 | 3.29e-63 | 188 |
| Msa0342410 | MtrunA17_Chr2g0295104 | 93.814 | 97 | 6 | 0 | 2 | 98 | 61 | 157 | 3.39e-61 | 183 |
| Msa0342410 | MtrunA17_Chr2g0295091 | 92.708 | 96 | 7 | 0 | 3 | 98 | 62 | 157 | 1.25e-59 | 179 |
| Msa0342410 | MtrunA17_Chr2g0295141 | 86.458 | 96 | 13 | 0 | 3 | 98 | 62 | 157 | 1.04e-56 | 172 |
| Msa0342410 | MtrunA17_Chr6g0462311 | 65.979 | 97 | 33 | 0 | 2 | 98 | 61 | 157 | 2.44e-39 | 128 |
| Msa0342410 | MtrunA17_Chr4g0067951 | 65.979 | 97 | 33 | 0 | 2 | 98 | 61 | 157 | 4.31e-39 | 127 |
| Msa0342410 | MtrunA17_Chr2g0295064 | 61.458 | 96 | 37 | 0 | 3 | 98 | 129 | 224 | 6.09e-35 | 119 |
| Msa0342410 | MtrunA17_Chr2g0295021 | 58.763 | 97 | 40 | 0 | 2 | 98 | 61 | 157 | 7.47e-35 | 116 |
| Msa0342410 | MtrunA17_Chr2g0295001 | 58.763 | 97 | 40 | 0 | 2 | 98 | 61 | 157 | 7.47e-35 | 116 |
| Msa0342410 | MtrunA17_Chr2g0295051 | 57.292 | 96 | 41 | 0 | 3 | 98 | 62 | 157 | 5.80e-34 | 114 |
| Msa0342410 | MtrunA17_Chr2g0295041 | 58.333 | 96 | 40 | 0 | 3 | 98 | 62 | 157 | 1.52e-33 | 113 |
| Msa0342410 | MtrunA17_Chr2g0295081 | 52.577 | 97 | 46 | 0 | 2 | 98 | 61 | 157 | 2.29e-30 | 105 |
| Msa0342410 | MtrunA17_Chr6g0462291 | 62.500 | 80 | 30 | 0 | 2 | 81 | 61 | 140 | 2.45e-28 | 100 |
| Msa0342410 | MtrunA17_Chr4g0067921 | 40.659 | 91 | 52 | 2 | 10 | 98 | 68 | 158 | 1.05e-15 | 68.2 |
| Msa0342410 | MtrunA17_Chr2g0295211 | 31.111 | 90 | 62 | 0 | 7 | 96 | 67 | 156 | 7.60e-13 | 60.5 |
| Msa0342410 | MtrunA17_Chr4g0067841 | 29.167 | 96 | 68 | 0 | 2 | 97 | 62 | 157 | 3.39e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACATTTACTTAATAATT+AGG | 0.132764 | 2_4:-65101904 | None:intergenic |
| TTGAGGTTTGAGTGTTGTTT+TGG | 0.265436 | 2_4:+65102038 | Msa0342410:three_prime_UTR |
| GGCCATTGAGGGTTACGTTT+TGG | 0.315356 | 2_4:+65101876 | Msa0342410:CDS |
| CTTGATAAGTCCAGTTCCTT+TGG | 0.329858 | 2_4:-65101854 | None:intergenic |
| ATACATTTACTTAATAATTA+GGG | 0.345110 | 2_4:-65101903 | None:intergenic |
| AGCAGTGGATGAGGCAAACT+TGG | 0.402684 | 2_4:+65101657 | Msa0342410:CDS |
| TATAGCATAGTAGGAGGAAC+AGG | 0.403927 | 2_4:+65101688 | Msa0342410:CDS |
| AGATAGAACTGCATCACCTT+TGG | 0.408990 | 2_4:-65101806 | None:intergenic |
| GAGACTAAGGCCAAAGGAAC+TGG | 0.415366 | 2_4:+65101844 | Msa0342410:CDS |
| AGTGTTGTGGCTGGCTCTGA+TGG | 0.429803 | 2_4:+65101748 | Msa0342410:CDS |
| TTATTAAACAACCATATCAT+AGG | 0.433028 | 2_4:-65101960 | None:intergenic |
| TTATTAAGTAAATGTATACT+TGG | 0.433767 | 2_4:+65101909 | Msa0342410:exon |
| GGATACAACTATAGCATAGT+AGG | 0.470749 | 2_4:+65101679 | Msa0342410:CDS |
| GGACTTATCAAGGCCATTGA+GGG | 0.495298 | 2_4:+65101865 | Msa0342410:CDS |
| CTCTAGCTCGTACATGTGTG+TGG | 0.498650 | 2_4:+65101999 | Msa0342410:three_prime_UTR |
| TGCCAAAACGTAACCCTCAA+TGG | 0.499044 | 2_4:-65101878 | None:intergenic |
| CAAAGGAACTGGACTTATCA+AGG | 0.516806 | 2_4:+65101855 | Msa0342410:CDS |
| CAAATTAGAAGCAGTGGATG+AGG | 0.520372 | 2_4:+65101648 | Msa0342410:CDS |
| AGCAGTACGTGAGGAGACTA+AGG | 0.536209 | 2_4:+65101831 | Msa0342410:CDS |
| TGGACTTATCAAGGCCATTG+AGG | 0.566375 | 2_4:+65101864 | Msa0342410:CDS |
| TTTCACTGAAATCTTAACAA+TGG | 0.569031 | 2_4:-65101776 | None:intergenic |
| ACATGTGTGTGGGTCTATGT+TGG | 0.584175 | 2_4:+65102010 | Msa0342410:three_prime_UTR |
| TCTAGCTCGTACATGTGTGT+GGG | 0.587397 | 2_4:+65102000 | Msa0342410:three_prime_UTR |
| TAATTTGTGTAGCACAAAGT+CGG | 0.587472 | 2_4:-65101632 | None:intergenic |
| TTCGAGACAAGTGTTGTGGC+TGG | 0.589865 | 2_4:+65101739 | Msa0342410:CDS |
| GTTGTGGCTGGCTCTGATGG+TGG | 0.598616 | 2_4:+65101751 | Msa0342410:CDS |
| GCTACACAAATTAGAAGCAG+TGG | 0.603203 | 2_4:+65101642 | Msa0342410:CDS |
| CATAGTAGGAGGAACAGGGT+TGG | 0.607807 | 2_4:+65101693 | Msa0342410:CDS |
| GCAGTGGATGAGGCAAACTT+GGG | 0.627060 | 2_4:+65101658 | Msa0342410:CDS |
| TACAACTATAGCATAGTAGG+AGG | 0.648903 | 2_4:+65101682 | Msa0342410:CDS |
| TGAATTCGAGACAAGTGTTG+TGG | 0.660471 | 2_4:+65101735 | Msa0342410:CDS |
| TCAGTGAAATACCACACCAA+AGG | 0.661287 | 2_4:+65101790 | Msa0342410:CDS |
| CGTGAGGAGACTAAGGCCAA+AGG | 0.670663 | 2_4:+65101838 | Msa0342410:CDS |
| GAACTGCATCACCTTTGGTG+TGG | 0.674778 | 2_4:-65101801 | None:intergenic |
| TCTATCTGAAGCAGTACGTG+AGG | 0.678507 | 2_4:+65101822 | Msa0342410:CDS |
| ATAGCATAGTAGGAGGAACA+GGG | 0.716365 | 2_4:+65101689 | Msa0342410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATTTACTTAATAATTA+GGG | - | chr2_4:65101906-65101925 | None:intergenic | 10.0% |
| !! | TATACATTTACTTAATAATT+AGG | - | chr2_4:65101907-65101926 | None:intergenic | 10.0% |
| !! | ATACATTTACTTAATAATTA+GGG | - | chr2_4:65101906-65101925 | None:intergenic | 10.0% |
| !! | TATACATTTACTTAATAATT+AGG | - | chr2_4:65101907-65101926 | None:intergenic | 10.0% |
| !!! | TCAAACTTTATTTACATTTA+AGG | + | chr2_4:65101561-65101580 | Msa0342410:intron | 15.0% |
| !! | TTATTAAGTAAATGTATACT+TGG | + | chr2_4:65101909-65101928 | Msa0342410:exon | 15.0% |
| !!! | TCAAACTTTATTTACATTTA+AGG | + | chr2_4:65101561-65101580 | Msa0342410:intron | 15.0% |
| !! | TTATTAAGTAAATGTATACT+TGG | + | chr2_4:65101909-65101928 | Msa0342410:exon | 15.0% |
| !!! | TTACACGATTGATTTTTTTT+AGG | + | chr2_4:65101437-65101456 | Msa0342410:intron | 20.0% |
| !! | CTAAAAATTATTTCAGTCAT+CGG | - | chr2_4:65101541-65101560 | None:intergenic | 20.0% |
| !! | TTATTAAACAACCATATCAT+AGG | - | chr2_4:65101963-65101982 | None:intergenic | 20.0% |
| !!! | TTACACGATTGATTTTTTTT+AGG | + | chr2_4:65101437-65101456 | Msa0342410:intron | 20.0% |
| !! | CTAAAAATTATTTCAGTCAT+CGG | - | chr2_4:65101541-65101560 | None:intergenic | 20.0% |
| !! | TTATTAAACAACCATATCAT+AGG | - | chr2_4:65101963-65101982 | None:intergenic | 20.0% |
| !!! | AACTGTTGTTTATGGTATTT+TGG | + | chr2_4:65101326-65101345 | Msa0342410:intron | 25.0% |
| !!! | ATGGTATTTTGGTATTTTTG+TGG | + | chr2_4:65101337-65101356 | Msa0342410:intron | 25.0% |
| ! | ATTTATGATGTGTGTATTGT+AGG | + | chr2_4:65101601-65101620 | Msa0342410:intron | 25.0% |
| ! | TTTCACTGAAATCTTAACAA+TGG | - | chr2_4:65101779-65101798 | None:intergenic | 25.0% |
| !! | TAATTTTACAGCCTATGATA+TGG | + | chr2_4:65101949-65101968 | Msa0342410:three_prime_UTR | 25.0% |
| !!! | AACTGTTGTTTATGGTATTT+TGG | + | chr2_4:65101326-65101345 | Msa0342410:intron | 25.0% |
| !!! | ATGGTATTTTGGTATTTTTG+TGG | + | chr2_4:65101337-65101356 | Msa0342410:intron | 25.0% |
| ! | ATTTATGATGTGTGTATTGT+AGG | + | chr2_4:65101601-65101620 | Msa0342410:intron | 25.0% |
| ! | TTTCACTGAAATCTTAACAA+TGG | - | chr2_4:65101779-65101798 | None:intergenic | 25.0% |
| !! | TAATTTTACAGCCTATGATA+TGG | + | chr2_4:65101949-65101968 | Msa0342410:three_prime_UTR | 25.0% |
| ! | AATGTTAACTGTTGTTGTTG+TGG | + | chr2_4:65101289-65101308 | Msa0342410:intron | 30.0% |
| ! | TAATTTGTGTAGCACAAAGT+CGG | - | chr2_4:65101635-65101654 | None:intergenic | 30.0% |
| ! | AATGTTAACTGTTGTTGTTG+TGG | + | chr2_4:65101289-65101308 | Msa0342410:intron | 30.0% |
| ! | TAATTTGTGTAGCACAAAGT+CGG | - | chr2_4:65101635-65101654 | None:intergenic | 30.0% |
| ! | CGACAGTTAACTGTTGTTTA+TGG | + | chr2_4:65101318-65101337 | Msa0342410:intron | 35.0% |
| ! | TTAGGACTAGAGTTGATTGT+TGG | + | chr2_4:65101455-65101474 | Msa0342410:intron | 35.0% |
| ! | AACGATATCCAGTTACTTTC+AGG | + | chr2_4:65101511-65101530 | Msa0342410:intron | 35.0% |
| TATGATGTGTGTATTGTAGG+TGG | + | chr2_4:65101604-65101623 | Msa0342410:intron | 35.0% | |
| GGATACAACTATAGCATAGT+AGG | + | chr2_4:65101679-65101698 | Msa0342410:CDS | 35.0% | |
| TACAACTATAGCATAGTAGG+AGG | + | chr2_4:65101682-65101701 | Msa0342410:CDS | 35.0% | |
| ! | GGTCTATGTTGGATATTTTG+AGG | + | chr2_4:65102021-65102040 | Msa0342410:three_prime_UTR | 35.0% |
| !!! | TTGAGGTTTGAGTGTTGTTT+TGG | + | chr2_4:65102038-65102057 | Msa0342410:three_prime_UTR | 35.0% |
| !!! | TGAGGTTTGAGTGTTGTTTT+GGG | + | chr2_4:65102039-65102058 | Msa0342410:three_prime_UTR | 35.0% |
| ! | CGACAGTTAACTGTTGTTTA+TGG | + | chr2_4:65101318-65101337 | Msa0342410:intron | 35.0% |
| ! | TTAGGACTAGAGTTGATTGT+TGG | + | chr2_4:65101455-65101474 | Msa0342410:intron | 35.0% |
| ! | AACGATATCCAGTTACTTTC+AGG | + | chr2_4:65101511-65101530 | Msa0342410:intron | 35.0% |
| TATGATGTGTGTATTGTAGG+TGG | + | chr2_4:65101604-65101623 | Msa0342410:intron | 35.0% | |
| GGATACAACTATAGCATAGT+AGG | + | chr2_4:65101679-65101698 | Msa0342410:CDS | 35.0% | |
| TACAACTATAGCATAGTAGG+AGG | + | chr2_4:65101682-65101701 | Msa0342410:CDS | 35.0% | |
| ! | GGTCTATGTTGGATATTTTG+AGG | + | chr2_4:65102021-65102040 | Msa0342410:three_prime_UTR | 35.0% |
| !!! | TTGAGGTTTGAGTGTTGTTT+TGG | + | chr2_4:65102038-65102057 | Msa0342410:three_prime_UTR | 35.0% |
| !!! | TGAGGTTTGAGTGTTGTTTT+GGG | + | chr2_4:65102039-65102058 | Msa0342410:three_prime_UTR | 35.0% |
| CAGTTGAGACATGTTCATCA+AGG | - | chr2_4:65101236-65101255 | None:intergenic | 40.0% | |
| TGATGAACATGTCTCAACTG+TGG | + | chr2_4:65101236-65101255 | Msa0342410:intron | 40.0% | |
| ! | AGAGCTTTGTAGAGTTTAGC+TGG | - | chr2_4:65101264-65101283 | None:intergenic | 40.0% |
| GCTACACAAATTAGAAGCAG+TGG | + | chr2_4:65101642-65101661 | Msa0342410:CDS | 40.0% | |
| CAAATTAGAAGCAGTGGATG+AGG | + | chr2_4:65101648-65101667 | Msa0342410:CDS | 40.0% | |
| TATAGCATAGTAGGAGGAAC+AGG | + | chr2_4:65101688-65101707 | Msa0342410:CDS | 40.0% | |
| ATAGCATAGTAGGAGGAACA+GGG | + | chr2_4:65101689-65101708 | Msa0342410:CDS | 40.0% | |
| ! | TGAATTCGAGACAAGTGTTG+TGG | + | chr2_4:65101735-65101754 | Msa0342410:CDS | 40.0% |
| TCAGTGAAATACCACACCAA+AGG | + | chr2_4:65101790-65101809 | Msa0342410:CDS | 40.0% | |
| AGATAGAACTGCATCACCTT+TGG | - | chr2_4:65101809-65101828 | None:intergenic | 40.0% | |
| CTTGATAAGTCCAGTTCCTT+TGG | - | chr2_4:65101857-65101876 | None:intergenic | 40.0% | |
| CAAAGGAACTGGACTTATCA+AGG | + | chr2_4:65101855-65101874 | Msa0342410:CDS | 40.0% | |
| CAGTTGAGACATGTTCATCA+AGG | - | chr2_4:65101236-65101255 | None:intergenic | 40.0% | |
| TGATGAACATGTCTCAACTG+TGG | + | chr2_4:65101236-65101255 | Msa0342410:intron | 40.0% | |
| ! | AGAGCTTTGTAGAGTTTAGC+TGG | - | chr2_4:65101264-65101283 | None:intergenic | 40.0% |
| GCTACACAAATTAGAAGCAG+TGG | + | chr2_4:65101642-65101661 | Msa0342410:CDS | 40.0% | |
| CAAATTAGAAGCAGTGGATG+AGG | + | chr2_4:65101648-65101667 | Msa0342410:CDS | 40.0% | |
| TATAGCATAGTAGGAGGAAC+AGG | + | chr2_4:65101688-65101707 | Msa0342410:CDS | 40.0% | |
| ATAGCATAGTAGGAGGAACA+GGG | + | chr2_4:65101689-65101708 | Msa0342410:CDS | 40.0% | |
| ! | TGAATTCGAGACAAGTGTTG+TGG | + | chr2_4:65101735-65101754 | Msa0342410:CDS | 40.0% |
| TCAGTGAAATACCACACCAA+AGG | + | chr2_4:65101790-65101809 | Msa0342410:CDS | 40.0% | |
| AGATAGAACTGCATCACCTT+TGG | - | chr2_4:65101809-65101828 | None:intergenic | 40.0% | |
| CTTGATAAGTCCAGTTCCTT+TGG | - | chr2_4:65101857-65101876 | None:intergenic | 40.0% | |
| CAAAGGAACTGGACTTATCA+AGG | + | chr2_4:65101855-65101874 | Msa0342410:CDS | 40.0% | |
| TCGGTTGACCTGAAAGTAAC+TGG | - | chr2_4:65101522-65101541 | None:intergenic | 45.0% | |
| ! | TCTATCTGAAGCAGTACGTG+AGG | + | chr2_4:65101822-65101841 | Msa0342410:CDS | 45.0% |
| TGGACTTATCAAGGCCATTG+AGG | + | chr2_4:65101864-65101883 | Msa0342410:CDS | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | + | chr2_4:65101865-65101884 | Msa0342410:CDS | 45.0% | |
| TGCCAAAACGTAACCCTCAA+TGG | - | chr2_4:65101881-65101900 | None:intergenic | 45.0% | |
| ! | TCTAGCTCGTACATGTGTGT+GGG | + | chr2_4:65102000-65102019 | Msa0342410:three_prime_UTR | 45.0% |
| ACATGTGTGTGGGTCTATGT+TGG | + | chr2_4:65102010-65102029 | Msa0342410:three_prime_UTR | 45.0% | |
| TCGGTTGACCTGAAAGTAAC+TGG | - | chr2_4:65101522-65101541 | None:intergenic | 45.0% | |
| ! | TCTATCTGAAGCAGTACGTG+AGG | + | chr2_4:65101822-65101841 | Msa0342410:CDS | 45.0% |
| TGGACTTATCAAGGCCATTG+AGG | + | chr2_4:65101864-65101883 | Msa0342410:CDS | 45.0% | |
| GGACTTATCAAGGCCATTGA+GGG | + | chr2_4:65101865-65101884 | Msa0342410:CDS | 45.0% | |
| TGCCAAAACGTAACCCTCAA+TGG | - | chr2_4:65101881-65101900 | None:intergenic | 45.0% | |
| ! | TCTAGCTCGTACATGTGTGT+GGG | + | chr2_4:65102000-65102019 | Msa0342410:three_prime_UTR | 45.0% |
| ACATGTGTGTGGGTCTATGT+TGG | + | chr2_4:65102010-65102029 | Msa0342410:three_prime_UTR | 45.0% | |
| AGCAGTGGATGAGGCAAACT+TGG | + | chr2_4:65101657-65101676 | Msa0342410:CDS | 50.0% | |
| GCAGTGGATGAGGCAAACTT+GGG | + | chr2_4:65101658-65101677 | Msa0342410:CDS | 50.0% | |
| CATAGTAGGAGGAACAGGGT+TGG | + | chr2_4:65101693-65101712 | Msa0342410:CDS | 50.0% | |
| ! | TTCGAGACAAGTGTTGTGGC+TGG | + | chr2_4:65101739-65101758 | Msa0342410:CDS | 50.0% |
| GAACTGCATCACCTTTGGTG+TGG | - | chr2_4:65101804-65101823 | None:intergenic | 50.0% | |
| AGCAGTACGTGAGGAGACTA+AGG | + | chr2_4:65101831-65101850 | Msa0342410:CDS | 50.0% | |
| GAGACTAAGGCCAAAGGAAC+TGG | + | chr2_4:65101844-65101863 | Msa0342410:CDS | 50.0% | |
| ! | GGCCATTGAGGGTTACGTTT+TGG | + | chr2_4:65101876-65101895 | Msa0342410:CDS | 50.0% |
| ! | CTCTAGCTCGTACATGTGTG+TGG | + | chr2_4:65101999-65102018 | Msa0342410:three_prime_UTR | 50.0% |
| AGCAGTGGATGAGGCAAACT+TGG | + | chr2_4:65101657-65101676 | Msa0342410:CDS | 50.0% | |
| GCAGTGGATGAGGCAAACTT+GGG | + | chr2_4:65101658-65101677 | Msa0342410:CDS | 50.0% | |
| CATAGTAGGAGGAACAGGGT+TGG | + | chr2_4:65101693-65101712 | Msa0342410:CDS | 50.0% | |
| ! | TTCGAGACAAGTGTTGTGGC+TGG | + | chr2_4:65101739-65101758 | Msa0342410:CDS | 50.0% |
| GAACTGCATCACCTTTGGTG+TGG | - | chr2_4:65101804-65101823 | None:intergenic | 50.0% | |
| AGCAGTACGTGAGGAGACTA+AGG | + | chr2_4:65101831-65101850 | Msa0342410:CDS | 50.0% | |
| GAGACTAAGGCCAAAGGAAC+TGG | + | chr2_4:65101844-65101863 | Msa0342410:CDS | 50.0% | |
| ! | GGCCATTGAGGGTTACGTTT+TGG | + | chr2_4:65101876-65101895 | Msa0342410:CDS | 50.0% |
| ! | CTCTAGCTCGTACATGTGTG+TGG | + | chr2_4:65101999-65102018 | Msa0342410:three_prime_UTR | 50.0% |
| !! | AGTGTTGTGGCTGGCTCTGA+TGG | + | chr2_4:65101748-65101767 | Msa0342410:CDS | 55.0% |
| CGTGAGGAGACTAAGGCCAA+AGG | + | chr2_4:65101838-65101857 | Msa0342410:CDS | 55.0% | |
| !! | AGTGTTGTGGCTGGCTCTGA+TGG | + | chr2_4:65101748-65101767 | Msa0342410:CDS | 55.0% |
| CGTGAGGAGACTAAGGCCAA+AGG | + | chr2_4:65101838-65101857 | Msa0342410:CDS | 55.0% | |
| !! | GTTGTGGCTGGCTCTGATGG+TGG | + | chr2_4:65101751-65101770 | Msa0342410:CDS | 60.0% |
| !! | GTTGTGGCTGGCTCTGATGG+TGG | + | chr2_4:65101751-65101770 | Msa0342410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 65101216 | 65102077 | 65101216 | ID=Msa0342410;Name=Msa0342410 |
| chr2_4 | mRNA | 65101216 | 65102077 | 65101216 | ID=Msa0342410-mRNA-1;Parent=Msa0342410;Name=Msa0342410-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0|0.5|1|1|1|2|162|98 |
| chr2_4 | exon | 65101216 | 65101219 | 65101216 | ID=Msa0342410-mRNA-1:exon:20767;Parent=Msa0342410-mRNA-1 |
| chr2_4 | exon | 65101623 | 65102077 | 65101623 | ID=Msa0342410-mRNA-1:exon:20768;Parent=Msa0342410-mRNA-1 |
| chr2_4 | CDS | 65101216 | 65101219 | 65101216 | ID=Msa0342410-mRNA-1:cds;Parent=Msa0342410-mRNA-1 |
| chr2_4 | CDS | 65101623 | 65101915 | 65101623 | ID=Msa0342410-mRNA-1:cds;Parent=Msa0342410-mRNA-1 |
| chr2_4 | three_prime_UTR | 65101916 | 65102077 | 65101916 | ID=Msa0342410-mRNA-1:three_prime_utr;Parent=Msa0342410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
