AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0953230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0953230 MtrunA17_Chr6g0470321 90.741 324 13 1 1 307 1 324 0.0 594
Msa0953230 MtrunA17_Chr6g0470501 81.433 307 40 1 18 307 37 343 0.0 510
Msa0953230 MtrunA17_Chr1g0202871 68.421 304 82 1 18 307 10 313 6.85e-150 423
Msa0953230 MtrunA17_Chr1g0202931 68.977 303 80 1 18 306 10 312 7.81e-150 422
Msa0953230 MtrunA17_Chr1g0202891 68.092 304 83 1 18 307 10 313 6.32e-149 420
Msa0953230 MtrunA17_Chr1g0202861 66.776 304 87 1 18 307 51 354 1.78e-148 421
Msa0953230 MtrunA17_Chr8g0386971 62.706 303 99 1 17 305 9 311 1.11e-138 394
Msa0953230 MtrunA17_Chr1g0182541 57.566 304 115 1 17 306 14 317 4.57e-119 345
Msa0953230 MtrunA17_Chr7g0262941 57.377 305 115 2 17 306 14 318 1.85e-116 338
Msa0953230 MtrunA17_Chr4g0058731 46.358 302 144 2 17 300 25 326 2.57e-84 257
Msa0953230 MtrunA17_Chr8g0388831 44.156 308 154 3 17 306 14 321 2.32e-78 242
Msa0953230 MtrunA17_Chr3g0117241 50.355 141 67 1 17 154 14 154 8.10e-40 137
Msa0953230 MtrunA17_Chr3g0117251 41.916 167 82 1 155 306 1 167 1.21e-37 132
Msa0953230 MtrunA17_Chr6g0466681 31.621 253 149 7 40 279 69 310 2.49e-28 112
Msa0953230 MtrunA17_Chr2g0317921 30.868 311 166 11 41 306 90 396 3.41e-24 101
Msa0953230 MtrunA17_Chr6g0481311 28.289 304 179 6 36 306 60 357 8.23e-24 100
Msa0953230 MtrunA17_Chr1g0202911 59.459 74 30 0 41 114 4 77 9.99e-23 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0953230 AT4G23420.3 68.317 303 81 2 18 305 27 329 1.76e-151 428
Msa0953230 AT4G23420.1 68.317 303 81 2 18 305 10 312 2.62e-151 427
Msa0953230 AT4G23420.2 68.317 303 81 2 18 305 10 312 2.62e-151 427
Msa0953230 AT4G23430.2 66.997 303 85 1 18 305 10 312 3.19e-150 424
Msa0953230 AT4G23430.1 66.667 303 84 2 18 305 10 310 7.42e-147 416
Msa0953230 AT4G11410.1 65.894 302 89 1 18 305 10 311 1.28e-143 407
Msa0953230 AT4G23430.4 64.026 303 84 2 18 305 10 302 3.34e-140 398
Msa0953230 AT4G23430.3 63.696 303 83 3 18 305 10 300 5.23e-137 390
Msa0953230 AT4G23420.5 68.379 253 65 2 18 255 10 262 1.49e-121 349
Msa0953230 AT4G23420.4 73.246 228 61 0 18 245 10 237 3.26e-121 348
Msa0953230 AT5G02540.1 58.553 304 112 1 17 306 13 316 1.35e-114 334
Msa0953230 AT4G11410.2 71.930 228 64 0 18 245 10 237 2.26e-114 331
Msa0953230 AT2G37540.1 54.125 303 125 1 18 306 14 316 2.49e-111 325
Msa0953230 AT2G37540.2 57.456 228 97 0 18 245 14 241 1.53e-88 265
Msa0953230 AT4G24050.1 45.098 306 151 2 18 306 15 320 2.20e-84 257
Msa0953230 AT5G50130.1 46.429 308 147 3 17 306 14 321 4.93e-83 254
Msa0953230 AT5G50130.8 46.619 281 135 1 41 306 7 287 1.33e-79 244
Msa0953230 AT5G50130.7 46.809 282 134 2 41 306 7 288 5.33e-79 243
Msa0953230 AT1G64590.1 42.475 299 155 2 25 306 22 320 4.91e-70 221
Msa0953230 AT5G50130.9 48.684 228 115 1 17 242 14 241 4.53e-67 211
Msa0953230 AT5G50130.2 43.571 280 139 4 17 277 14 293 1.01e-66 212
Msa0953230 AT4G24050.2 47.414 232 120 1 18 247 15 246 1.38e-66 210
Msa0953230 AT5G50130.3 48.908 229 114 2 17 242 14 242 2.13e-66 209
Msa0953230 AT5G50130.4 43.772 281 138 5 17 277 14 294 4.15e-66 210
Msa0953230 AT5G50130.6 43.874 253 125 3 42 277 8 260 1.16e-62 200
Msa0953230 AT5G50130.5 44.094 254 124 4 42 277 8 261 4.71e-62 199
Msa0953230 AT4G09750.1 32.432 259 137 8 41 279 47 287 3.56e-29 114
Msa0953230 AT5G54190.1 30.868 311 166 11 41 306 96 402 7.24e-29 114
Msa0953230 AT4G27440.2 31.045 335 178 12 21 306 68 398 7.87e-27 108
Msa0953230 AT4G27440.1 31.045 335 178 12 21 306 68 398 7.87e-27 108
Msa0953230 AT1G03630.2 31.310 313 163 11 40 306 90 396 3.59e-26 107
Msa0953230 AT1G03630.1 31.310 313 163 11 40 306 92 398 3.94e-26 107
Msa0953230 AT4G27760.1 30.421 309 164 11 36 306 56 351 7.65e-25 103
Msa0953230 AT5G53090.1 30.392 306 168 10 36 306 55 350 6.27e-23 97.8
Msa0953230 AT5G54190.2 29.699 266 141 9 85 306 18 281 1.72e-22 95.1
Msa0953230 AT5G53100.1 30.619 307 169 11 36 306 43 341 1.02e-21 94.4
Msa0953230 AT5G04070.1 27.703 296 174 8 39 302 60 347 1.31e-17 82.8
Msa0953230 AT5G61830.1 27.305 282 155 10 39 279 38 310 1.59e-16 79.0
Msa0953230 AT5G61830.2 27.305 282 155 10 39 279 38 310 1.59e-16 79.0
Msa0953230 AT3G59710.3 28.519 270 151 7 40 277 21 280 5.89e-16 77.0
Msa0953230 AT3G59710.2 28.519 270 151 7 40 277 50 309 1.33e-15 76.6
Msa0953230 AT3G59710.1 28.519 270 151 7 40 277 31 290 1.44e-15 76.3
Msa0953230 AT5G15940.1 26.821 302 179 10 39 306 61 354 8.40e-15 74.3
Msa0953230 AT5G15940.3 26.821 302 179 10 39 306 62 355 9.64e-15 74.3
Msa0953230 AT5G15940.2 26.821 302 179 10 39 306 62 355 9.64e-15 74.3
Msa0953230 AT5G15940.4 27.511 229 135 8 39 247 62 279 6.71e-13 68.6

Find 68 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTAATACCCTTCACTTT+TGG 0.160704 6_3:+49163942 None:intergenic
CAATTTGCCACAAATCATTT+AGG 0.223197 6_3:-49166943 Msa0953230:intron
CATCATTAATGTTATCAAAA+AGG 0.225382 6_3:+49166682 None:intergenic
GCGTGGTGTTCATGTGATTA+TGG 0.263525 6_3:-49167863 Msa0953230:CDS
GACCATACGCCCTCCATCTT+TGG 0.282174 6_3:+49165678 None:intergenic
AAACACTTAATTTATTAAAC+TGG 0.294659 6_3:+49163717 None:intergenic
TTGTAGTTCAATGTTGTCTT+TGG 0.309375 6_3:+49166963 None:intergenic
ATCACATCAACTTTAGCTTT+AGG 0.309797 6_3:+49167784 None:intergenic
CTGATTTGGCAAAGAAACTT+TGG 0.333007 6_3:-49163866 Msa0953230:CDS
GAAAATATTATATTTCCATA+TGG 0.358689 6_3:-49163639 Msa0953230:three_prime_UTR
ATATTTCCATATGGGTTGTA+AGG 0.365101 6_3:-49163630 Msa0953230:three_prime_UTR
CGTGGTGTTCATGTGATTAT+GGG 0.368728 6_3:-49167862 Msa0953230:CDS
GAAATTTCTTGCAAGTTCAT+TGG 0.376931 6_3:+49165628 None:intergenic
GGAGTTAGATTTAAGTTCAA+TGG 0.407052 6_3:-49167761 Msa0953230:CDS
ACAGGCAAATGACACTGATT+TGG 0.413064 6_3:-49163880 Msa0953230:CDS
TGAACTTGCAAGAAATTTCA+AGG 0.418907 6_3:-49165624 Msa0953230:intron
TAAGTTCAATGGCATCAGTT+AGG 0.419951 6_3:-49167750 Msa0953230:CDS
TTTCATCTTGATCAGGAAGA+TGG 0.420476 6_3:-49165106 Msa0953230:intron
TGTTAGAGAAGAAATACTTA+AGG 0.421323 6_3:-49167812 Msa0953230:CDS
TGATTTGGCAAAGAAACTTT+GGG 0.427784 6_3:-49163865 Msa0953230:CDS
AAAATATTATATTTCCATAT+GGG 0.436286 6_3:-49163638 Msa0953230:three_prime_UTR
CCAAAAGTGAAGGGTATTAG+TGG 0.436632 6_3:-49163942 Msa0953230:CDS
TTGTGTACAGTTACCAAAGA+TGG 0.438141 6_3:-49165691 Msa0953230:intron
ATACATACCTAAATGATTTG+TGG 0.457967 6_3:+49166936 None:intergenic
GGAGTGAGAAATATTAATGC+TGG 0.459888 6_3:-49167841 Msa0953230:CDS
ATAATTCCTTACAACCCATA+TGG 0.461439 6_3:+49163624 None:intergenic
ATAACATTAATGATGAATCA+AGG 0.485012 6_3:-49166674 Msa0953230:intron
GTGTCATTTGCCTGTGAGCT+TGG 0.486380 6_3:+49163888 None:intergenic
TTCATCTTGATCAGGAAGAT+GGG 0.490977 6_3:-49165105 Msa0953230:intron
GAAGTTACTCATGGGATCGA+TGG 0.508257 6_3:-49169530 Msa0953230:CDS
AGGTATGTGAAGAGTGAGAG+TGG 0.510333 6_3:+49169645 None:intergenic
ACAGGAACAACACATGGTAT+TGG 0.522180 6_3:-49167913 Msa0953230:intron
GTAATTCTCAGAAACAATGC+AGG 0.529725 6_3:-49167012 Msa0953230:intron
TAAAGCTAAAGTTGATGTGA+TGG 0.530604 6_3:-49167782 Msa0953230:CDS
TACCAAAGATGGAGGGCGTA+TGG 0.531026 6_3:-49165680 Msa0953230:CDS
GCTAGTGAAAGCAAGAAAGA+AGG 0.536418 6_3:-49166759 Msa0953230:CDS
TATAGTTAAAACTATCCAGC+AGG 0.546506 6_3:-49164104 Msa0953230:intron
GCAAGAGTTCTTGCCTTGCG+TGG 0.548679 6_3:-49167880 Msa0953230:CDS
ATTATTAATCTCTCATCTGA+TGG 0.553269 6_3:-49166732 Msa0953230:CDS
AGGACTCATGCTGTGTGTAA+AGG 0.554986 6_3:+49169625 None:intergenic
ACTGCAAACTCTCTTCATCC+AGG 0.559782 6_3:-49165073 Msa0953230:CDS
TCTTACATGAGAATGTTCAA+TGG 0.562947 6_3:+49167694 None:intergenic
GAAGATAATGTAAACTCAGA+AGG 0.566478 6_3:+49169563 None:intergenic
ACCGCAGAGGAAGTTACTCA+TGG 0.570803 6_3:-49169539 Msa0953230:CDS
TGTGGCTGAACCAAGCTCAC+AGG 0.576875 6_3:-49163898 Msa0953230:CDS
AAGTTACTCATGGGATCGAT+GGG 0.579629 6_3:-49169529 Msa0953230:CDS
GATGATAATGTAAACTCAGA+AGG 0.580959 6_3:+49169605 None:intergenic
TACATTATCATCCTCTGCTG+AGG 0.584575 6_3:-49169594 Msa0953230:CDS
ATGAGTAACTTCCTCTGCGG+TGG 0.585066 6_3:+49169541 None:intergenic
AGCATTGAACCCAAAAGTGA+AGG 0.588672 6_3:-49163952 Msa0953230:CDS
TCATCTTGATCAGGAAGATG+GGG 0.589509 6_3:-49165104 Msa0953230:intron
TTGTCTTTGGAGAGTGTGAA+AGG 0.596727 6_3:+49166976 None:intergenic
CACGGTTATACATATCCTGA+AGG 0.598621 6_3:-49166708 Msa0953230:CDS
CTTGATCAGGAAGATGGGGT+TGG 0.599285 6_3:-49165100 Msa0953230:intron
AATCACATGAACACCACGCA+AGG 0.601836 6_3:+49167867 None:intergenic
GCATTGAACCCAAAAGTGAA+GGG 0.604824 6_3:-49163951 Msa0953230:CDS
ACTCATGGGATCGATGGGAA+TGG 0.609139 6_3:-49169524 Msa0953230:CDS
AGGAATAACTTCCTCAGCAG+AGG 0.610726 6_3:+49169583 None:intergenic
TGAAACAGTTGTTTGTGATG+AGG 0.618272 6_3:-49163692 Msa0953230:three_prime_UTR
AATCTCTCATCTGATGGTCA+CGG 0.620167 6_3:-49166726 Msa0953230:CDS
TTTGATACAGGAACAACACA+TGG 0.623640 6_3:-49167919 Msa0953230:intron
TACATTATCTTCCACCGCAG+AGG 0.623742 6_3:-49169552 Msa0953230:CDS
TGTACAGTTACCAAAGATGG+AGG 0.629666 6_3:-49165688 Msa0953230:intron
AATGTTCAATGGAAGAGCAG+TGG 0.631955 6_3:+49167705 None:intergenic
CCGCAGAGGAAGTTACTCAT+GGG 0.634413 6_3:-49169538 Msa0953230:CDS
TCTTTGGAGAGTGTGAAAGG+TGG 0.641135 6_3:+49166979 None:intergenic
GTACAGTTACCAAAGATGGA+GGG 0.712221 6_3:-49165687 Msa0953230:intron
CCCATGAGTAACTTCCTCTG+CGG 0.714059 6_3:+49169538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATTTATAAA+AGG - chr6_3:49164117-49164136 Msa0953230:CDS 0.0%
!!! TTTTTTATTTATTTATAAAA+GGG - chr6_3:49164118-49164137 Msa0953230:CDS 0.0%
!! TTATATAATATTATAAAAAA+GGG + chr6_3:49165944-49165963 None:intergenic 0.0%
!! TTTATATAATATTATAAAAA+AGG + chr6_3:49165945-49165964 None:intergenic 0.0%
!! AATATTATATAAATAAAAAT+AGG - chr6_3:49165952-49165971 Msa0953230:intron 0.0%
!! ATATTATATAAATAAAAATA+GGG - chr6_3:49165953-49165972 Msa0953230:intron 0.0%
!! AATTCATTCATTAATTAAAT+AGG + chr6_3:49164308-49164327 None:intergenic 10.0%
!!! AAATAACAATTAACAAATTT+TGG - chr6_3:49165240-49165259 Msa0953230:intron 10.0%
!! TCAAAAAAATAAACAATTAA+GGG + chr6_3:49165306-49165325 None:intergenic 10.0%
!! ATCAAAAAAATAAACAATTA+AGG + chr6_3:49165307-49165326 None:intergenic 10.0%
!!! TTTTTTATTATTTATTTCAC+AGG - chr6_3:49166412-49166431 Msa0953230:intron 10.0%
!!! AATATTGCTAATATTATTTT+AGG - chr6_3:49167645-49167664 Msa0953230:intron 10.0%
!!! TTATTCTTTTTATAAAACAT+GGG + chr6_3:49168468-49168487 None:intergenic 10.0%
!!! TTTATTCTTTTTATAAAACA+TGG + chr6_3:49168469-49168488 None:intergenic 10.0%
!!! TTTTTTTGATAAAAACTAAA+TGG + chr6_3:49168666-49168685 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr6_3:49168863-49168882 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr6_3:49168864-49168883 None:intergenic 10.0%
!! AAAATATTATATTTCCATAT+GGG - chr6_3:49169602-49169621 Msa0953230:CDS 10.0%
!! AGCAATATAATGAAATTAAA+GGG + chr6_3:49163885-49163904 None:intergenic 15.0%
!! AAGCAATATAATGAAATTAA+AGG + chr6_3:49163886-49163905 None:intergenic 15.0%
!!! AAAAATGATTAGTATTTTAG+TGG - chr6_3:49164057-49164076 Msa0953230:intron 15.0%
!! ATGTGTTTGTAATAATAAAA+AGG + chr6_3:49164278-49164297 None:intergenic 15.0%
!! CTAACTTATAACTAAAAAAT+CGG + chr6_3:49164565-49164584 None:intergenic 15.0%
!!! ATTTTTTAGTTATAAGTTAG+CGG - chr6_3:49164565-49164584 Msa0953230:intron 15.0%
!!! ATTGTTTATTTTTTTGATAC+AGG - chr6_3:49165309-49165328 Msa0953230:intron 15.0%
!!! TTTAAATTTTGATACATTGA+GGG + chr6_3:49165702-49165721 None:intergenic 15.0%
!!! TTTTAAATTTTGATACATTG+AGG + chr6_3:49165703-49165722 None:intergenic 15.0%
!!! AATGAAGTATTTTAATGTTA+AGG + chr6_3:49165762-49165781 None:intergenic 15.0%
!! TAATTATTTATTACACATTC+AGG - chr6_3:49165901-49165920 Msa0953230:intron 15.0%
!! AATTATTTATTACACATTCA+GGG - chr6_3:49165902-49165921 Msa0953230:intron 15.0%
!!! AAAAAGTTACTGTTAATTTT+AGG - chr6_3:49167095-49167114 Msa0953230:intron 15.0%
!!! TTTTATTGTTAAATGAACAA+TGG + chr6_3:49167689-49167708 None:intergenic 15.0%
!!! TACACAAAAAACTATTTTTT+AGG - chr6_3:49168312-49168331 Msa0953230:intron 15.0%
!!! GTTTTAATGAACTTTAATTA+AGG + chr6_3:49168634-49168653 None:intergenic 15.0%
!! TTTAAATAATTTCCCTTAAT+TGG - chr6_3:49168686-49168705 Msa0953230:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr6_3:49168799-49168818 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr6_3:49168862-49168881 None:intergenic 15.0%
!!! CATAAAAGTACATATATTTT+TGG + chr6_3:49169432-49169451 None:intergenic 15.0%
!! AAACACTTAATTTATTAAAC+TGG + chr6_3:49169526-49169545 None:intergenic 15.0%
!! GAAAATATTATATTTCCATA+TGG - chr6_3:49169601-49169620 Msa0953230:CDS 15.0%
!!! AACAACAATTATACTTTTGT+GGG + chr6_3:49164371-49164390 None:intergenic 20.0%
!!! GTCATTTTCATATGTTTTTA+TGG + chr6_3:49164515-49164534 None:intergenic 20.0%
!!! ACTATTTTTTCCTTGAAATA+GGG + chr6_3:49164891-49164910 None:intergenic 20.0%
!!! AACTATTTTTTCCTTGAAAT+AGG + chr6_3:49164892-49164911 None:intergenic 20.0%
!! ATTTCAAGGAAAAAATAGTT+AGG - chr6_3:49164892-49164911 Msa0953230:intron 20.0%
!!! TAACATGAATAGTCATTTTA+AGG - chr6_3:49164990-49165009 Msa0953230:intron 20.0%
!!! TTGATTTTGAAAATTTGACA+TGG + chr6_3:49165212-49165231 None:intergenic 20.0%
!!! GTTTTACATGTTTTGTTTAT+TGG - chr6_3:49165597-49165616 Msa0953230:intron 20.0%
!!! AAAAAGGGTAATAACTATTT+TGG + chr6_3:49165929-49165948 None:intergenic 20.0%
!!! ATGTGTATGAATTTTCTTAA+GGG + chr6_3:49166051-49166070 None:intergenic 20.0%
!!! GTAGTTTTTAGTTTTTCTTA+AGG - chr6_3:49166141-49166160 Msa0953230:intron 20.0%
!! AAACATTACTATCATAATCA+AGG + chr6_3:49166188-49166207 None:intergenic 20.0%
!! CATCATTAATGTTATCAAAA+AGG + chr6_3:49166561-49166580 None:intergenic 20.0%
!! ATAACATTAATGATGAATCA+AGG - chr6_3:49166566-49166585 Msa0953230:intron 20.0%
!!! AAACAAATGATGTTACATTT+TGG - chr6_3:49167154-49167173 Msa0953230:intron 20.0%
!! TACAAGGTAAAATTTATTGT+TGG - chr6_3:49167224-49167243 Msa0953230:intron 20.0%
!! ATAATCTATTAGGTAATGTT+TGG - chr6_3:49167767-49167786 Msa0953230:CDS 20.0%
!!! TTTTATATATATACTCCCTT+CGG - chr6_3:49168280-49168299 Msa0953230:intron 20.0%
!!! TTATTTTGGGTTTAGAAAAT+GGG + chr6_3:49168738-49168757 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr6_3:49168839-49168858 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr6_3:49168898-49168917 Msa0953230:intron 20.0%
!! AATAAATAATCTTGTAGACA+AGG - chr6_3:49168993-49169012 Msa0953230:intron 20.0%
!!! TTTTAACTATAATTTTCCCT+AGG + chr6_3:49169127-49169146 None:intergenic 20.0%
! NNNNNNATTGCGATTGTTAC+AGG - chr6_3:49163837-49163856 Msa0953230:exon 25.0%
!!! ATTGCTTATTTTTCAGACTT+TGG - chr6_3:49163899-49163918 Msa0953230:CDS 25.0%
! ACATGATCCATAAAATAGAA+CGG + chr6_3:49163942-49163961 None:intergenic 25.0%
! AAATAGAGTGTAATTAAAGG+TGG + chr6_3:49164254-49164273 None:intergenic 25.0%
! GGAAAATAGAGTGTAATTAA+AGG + chr6_3:49164257-49164276 None:intergenic 25.0%
!! ACAACAATTATACTTTTGTG+GGG + chr6_3:49164370-49164389 None:intergenic 25.0%
!! CAACAACAATTATACTTTTG+TGG + chr6_3:49164372-49164391 None:intergenic 25.0%
!! CACAAAAGTATAATTGTTGT+TGG - chr6_3:49164370-49164389 Msa0953230:intron 25.0%
!!! CATATGTTTTTATGGAACAA+TGG + chr6_3:49164507-49164526 None:intergenic 25.0%
! ACTTATAACTAAAAAATCGG+CGG + chr6_3:49164562-49164581 None:intergenic 25.0%
!! AAATGAGTTTTTCACCAATT+CGG + chr6_3:49164850-49164869 None:intergenic 25.0%
! TGTTCTTGTTAAGTAAAGTT+TGG + chr6_3:49165129-49165148 None:intergenic 25.0%
! TGTTAGAGAAGAAATACTTA+AGG - chr6_3:49165428-49165447 Msa0953230:intron 25.0%
!!! TTTATTGGTCTTACCATTTA+AGG - chr6_3:49165612-49165631 Msa0953230:intron 25.0%
!!! TACTTACTTATTGTCACTTT+AGG - chr6_3:49165808-49165827 Msa0953230:intron 25.0%
!!! ACTTACTTATTGTCACTTTA+GGG - chr6_3:49165809-49165828 Msa0953230:intron 25.0%
! TGACTAACAAAGTACAAAAT+CGG - chr6_3:49165839-49165858 Msa0953230:intron 25.0%
!! CATGTGTATGAATTTTCTTA+AGG + chr6_3:49166052-49166071 None:intergenic 25.0%
! TTCACATGACTAAGAAAATA+AGG + chr6_3:49166084-49166103 None:intergenic 25.0%
! TATCATAATCAAGGTGTAAA+AGG + chr6_3:49166179-49166198 None:intergenic 25.0%
! ATACATACCTAAATGATTTG+TGG + chr6_3:49166307-49166326 None:intergenic 25.0%
! GAGTTATGTAACTAATTATG+AGG + chr6_3:49166336-49166355 None:intergenic 25.0%
! ATTATTAATCTCTCATCTGA+TGG - chr6_3:49166508-49166527 Msa0953230:intron 25.0%
! ATGAATCAAGGTAAGAAAAT+AGG - chr6_3:49166578-49166597 Msa0953230:intron 25.0%
! GAATCCTTAATACATACTAT+TGG - chr6_3:49166600-49166619 Msa0953230:intron 25.0%
! AGTTCCAATAGTATGTATTA+AGG + chr6_3:49166607-49166626 None:intergenic 25.0%
! TTGTTAAATCATGATATGTC+CGG - chr6_3:49166640-49166659 Msa0953230:intron 25.0%
! TAACCTTATATAAGTGACAT+GGG + chr6_3:49167206-49167225 None:intergenic 25.0%
! ACAATGGCATAATCATATTA+TGG + chr6_3:49167673-49167692 None:intergenic 25.0%
! ATAAGCTATCATGAAGAATT+AGG - chr6_3:49167864-49167883 Msa0953230:CDS 25.0%
! TAAGCTATCATGAAGAATTA+GGG - chr6_3:49167865-49167884 Msa0953230:CDS 25.0%
! GACATTGCATAGTATATATA+GGG + chr6_3:49168002-49168021 None:intergenic 25.0%
! AGACATTGCATAGTATATAT+AGG + chr6_3:49168003-49168022 None:intergenic 25.0%
! ATGTATGTGGTCTATATTAA+TGG - chr6_3:49168350-49168369 Msa0953230:intron 25.0%
!! TTTTTCCTTATAATAGTGAC+AGG - chr6_3:49168405-49168424 Msa0953230:intron 25.0%
! TTATTTACCCTCTAGTATAT+AGG - chr6_3:49168517-49168536 Msa0953230:intron 25.0%
! TATTTACCCTCTAGTATATA+GGG - chr6_3:49168518-49168537 Msa0953230:intron 25.0%
!!! GTTATTTTGGGTTTAGAAAA+TGG + chr6_3:49168739-49168758 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr6_3:49168751-49168770 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr6_3:49168752-49168771 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr6_3:49168840-49168859 None:intergenic 25.0%
! TTGTGTCAATTAAATTGGAA+CGG - chr6_3:49168903-49168922 Msa0953230:intron 25.0%
!!! TTCAATTTTAACCTCATTGT+AGG - chr6_3:49169243-49169262 Msa0953230:intron 25.0%
!!! TCAATTTTAACCTCATTGTA+GGG - chr6_3:49169244-49169263 Msa0953230:intron 25.0%
!!! GGAATCTAGTTTTATAGAAT+TGG - chr6_3:49169569-49169588 Msa0953230:CDS 25.0%
! GATGATAATGTAAACTCAGA+AGG + chr6_3:49163638-49163657 None:intergenic 30.0%
GAAGATAATGTAAACTCAGA+AGG + chr6_3:49163680-49163699 None:intergenic 30.0%
CATGATCCATAAAATAGAAC+GGG + chr6_3:49163941-49163960 None:intergenic 30.0%
TATAAACATGCCACAAAAGT+GGG - chr6_3:49164180-49164199 Msa0953230:intron 30.0%
! AAAAAAGCAAGCTTCTAAGA+TGG + chr6_3:49164479-49164498 None:intergenic 30.0%
! CATTGTTTCTTAGAAACACA+TGG + chr6_3:49164626-49164645 None:intergenic 30.0%
! CATGTGTTTCTAAGAAACAA+TGG - chr6_3:49164624-49164643 Msa0953230:intron 30.0%
AAGCAATTCTTGTCATCTTA+AGG - chr6_3:49164657-49164676 Msa0953230:intron 30.0%
ACACGAGAATGATATTAGAT+GGG + chr6_3:49164778-49164797 None:intergenic 30.0%
!!! GCATTTTTGGAAAAAGCATT+GGG + chr6_3:49164802-49164821 None:intergenic 30.0%
!! AGCATTTTTGGAAAAAGCAT+TGG + chr6_3:49164803-49164822 None:intergenic 30.0%
!!! TCGGATTTTAAAATCCGAAT+TGG - chr6_3:49164833-49164852 Msa0953230:intron 30.0%
AATACAAACTCAACTCAGTT+AGG - chr6_3:49164922-49164941 Msa0953230:intron 30.0%
! AAATTTGTGCTGATACAGTT+CGG + chr6_3:49164958-49164977 None:intergenic 30.0%
! CTCTCATGCATATTCATTTT+AGG - chr6_3:49165032-49165051 Msa0953230:intron 30.0%
!! AAGCATGTTTTTGACTACTT+TGG - chr6_3:49165085-49165104 Msa0953230:CDS 30.0%
! AGTAAAGTTTGGAAGCATAA+TGG + chr6_3:49165118-49165137 None:intergenic 30.0%
!! GATTATGTTGGTAGTGATTA+TGG + chr6_3:49165185-49165204 None:intergenic 30.0%
TGACATGGTTATGATTATGT+TGG + chr6_3:49165197-49165216 None:intergenic 30.0%
AATAATACTCCTTGTGCATT+TGG + chr6_3:49165267-49165286 None:intergenic 30.0%
!! ATCACATCAACTTTAGCTTT+AGG + chr6_3:49165459-49165478 None:intergenic 30.0%
!! TAAAGCTAAAGTTGATGTGA+TGG - chr6_3:49165458-49165477 Msa0953230:intron 30.0%
! GGAGTTAGATTTAAGTTCAA+TGG - chr6_3:49165479-49165498 Msa0953230:intron 30.0%
TCTTACATGAGAATGTTCAA+TGG + chr6_3:49165549-49165568 None:intergenic 30.0%
! CACTTGTTAAAGACCTTAAA+TGG + chr6_3:49165628-49165647 None:intergenic 30.0%
TCTAGACATTTGATACATGT+AGG - chr6_3:49165665-49165684 Msa0953230:CDS 30.0%
CTAGACATTTGATACATGTA+GGG - chr6_3:49165666-49165685 Msa0953230:CDS 30.0%
GACTAACAAAGTACAAAATC+GGG - chr6_3:49165840-49165859 Msa0953230:intron 30.0%
ACTAACAAAGTACAAAATCG+GGG - chr6_3:49165841-49165860 Msa0953230:intron 30.0%
AAAAATAGGGAAATAGCATG+TGG - chr6_3:49165966-49165985 Msa0953230:intron 30.0%
AAAATAGGGAAATAGCATGT+GGG - chr6_3:49165967-49165986 Msa0953230:intron 30.0%
TTATATGTGACAGAGTTGTA+AGG - chr6_3:49166119-49166138 Msa0953230:intron 30.0%
TTGTAGTTCAATGTTGTCTT+TGG + chr6_3:49166280-49166299 None:intergenic 30.0%
CAATTTGCCACAAATCATTT+AGG - chr6_3:49166297-49166316 Msa0953230:intron 30.0%
TTATCAAAAAGGATTCCTTC+AGG + chr6_3:49166550-49166569 None:intergenic 30.0%
AAAAGTGATATGTACCTTGA+GGG - chr6_3:49166825-49166844 Msa0953230:intron 30.0%
GTAACCTTATATAAGTGACA+TGG + chr6_3:49167207-49167226 None:intergenic 30.0%
GTCACTTATATAAGGTTACA+AGG - chr6_3:49167208-49167227 Msa0953230:intron 30.0%
GGCTATGATACTACTAATTA+GGG + chr6_3:49167379-49167398 None:intergenic 30.0%
AGGCTATGATACTACTAATT+AGG + chr6_3:49167380-49167399 None:intergenic 30.0%
ACTACAACTATATCCTTTCA+AGG + chr6_3:49167410-49167429 None:intergenic 30.0%
GCATGAAGATACAATTATTG+TGG - chr6_3:49167475-49167494 Msa0953230:intron 30.0%
GAAATTTCTTGCAAGTTCAT+TGG + chr6_3:49167615-49167634 None:intergenic 30.0%
TGAACTTGCAAGAAATTTCA+AGG - chr6_3:49167616-49167635 Msa0953230:intron 30.0%
AGGTAGCTTCATAATCTATT+AGG - chr6_3:49167757-49167776 Msa0953230:CDS 30.0%
AATAAACCGAAATCAGTTTG+TGG - chr6_3:49167889-49167908 Msa0953230:CDS 30.0%
! ACATATCCACAAACTGATTT+CGG + chr6_3:49167898-49167917 None:intergenic 30.0%
TTGCATAGTATATATAGGGT+CGG + chr6_3:49167998-49168017 None:intergenic 30.0%
TGTCAACTGAACTAAACTTA+CGG - chr6_3:49168024-49168043 Msa0953230:intron 30.0%
CTTATTGTTTCATCTTGATC+AGG - chr6_3:49168127-49168146 Msa0953230:intron 30.0%
TTTGAATAGAACAACCTGTT+GGG + chr6_3:49168254-49168273 None:intergenic 30.0%
! TTTTGAATAGAACAACCTGT+TGG + chr6_3:49168255-49168274 None:intergenic 30.0%
TGTGTATTATAGTTACCGAA+GGG + chr6_3:49168298-49168317 None:intergenic 30.0%
TTGTGTATTATAGTTACCGA+AGG + chr6_3:49168299-49168318 None:intergenic 30.0%
CATCGAATAAATGATGTATG+TGG - chr6_3:49168337-49168356 Msa0953230:intron 30.0%
AAAACACATCGAATACGAAA+AGG + chr6_3:49168442-49168461 None:intergenic 30.0%
! TTTTCGTATTCGATGTGTTT+TGG - chr6_3:49168441-49168460 Msa0953230:intron 30.0%
ATTTACCCTCTAGTATATAG+GGG - chr6_3:49168519-49168538 Msa0953230:intron 30.0%
TTAATTAAGGTCGAATCAAC+CGG + chr6_3:49168621-49168640 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr6_3:49168855-49168874 None:intergenic 30.0%
TATAGTTAAAACTATCCAGC+AGG - chr6_3:49169136-49169155 Msa0953230:intron 30.0%
!!! GTTTTTTTGTGACAGTAATG+TGG - chr6_3:49169324-49169343 Msa0953230:intron 30.0%
! TGATTTGGCAAAGAAACTTT+GGG - chr6_3:49169375-49169394 Msa0953230:intron 30.0%
! ATATTTCCATATGGGTTGTA+AGG - chr6_3:49169610-49169629 Msa0953230:CDS 30.0%
ATAATTCCTTACAACCCATA+TGG + chr6_3:49169619-49169638 None:intergenic 30.0%
! AAAGAGCCCGTTCTATTTTA+TGG - chr6_3:49163932-49163951 Msa0953230:CDS 35.0%
GTATAAACATGCCACAAAAG+TGG - chr6_3:49164179-49164198 Msa0953230:intron 35.0%
AGTTAAACACTGGAGAAAAC+AGG + chr6_3:49164229-49164248 None:intergenic 35.0%
AAAGGTGGATAGTTAAACAC+TGG + chr6_3:49164239-49164258 None:intergenic 35.0%
! ACAATTATACTTTTGTGGGG+AGG + chr6_3:49164367-49164386 None:intergenic 35.0%
! AAATGGGCTCATACTAGTTT+GGG - chr6_3:49164419-49164438 Msa0953230:intron 35.0%
!! GTTAACTACTGCTTGGTTTT+TGG + chr6_3:49164537-49164556 None:intergenic 35.0%
!!! GAGTCCAAATTGGTTTTAGA+CGG + chr6_3:49164694-49164713 None:intergenic 35.0%
AAAACCAATTTGGACTCGTT+TGG - chr6_3:49164697-49164716 Msa0953230:intron 35.0%
CACACGAGAATGATATTAGA+TGG + chr6_3:49164779-49164798 None:intergenic 35.0%
AAAAATGCTCGTGTGCAATT+CGG - chr6_3:49164814-49164833 Msa0953230:intron 35.0%
! TCCTTGAAATAGGGTGTTTA+GGG + chr6_3:49164882-49164901 None:intergenic 35.0%
! TTCCTTGAAATAGGGTGTTT+AGG + chr6_3:49164883-49164902 None:intergenic 35.0%
!! ATGTTGGTAGTGATTATGGT+TGG + chr6_3:49165181-49165200 None:intergenic 35.0%
!! AATTTTGGTCCAAATGCACA+AGG - chr6_3:49165255-49165274 Msa0953230:intron 35.0%
TTTGATACAGGAACAACACA+TGG - chr6_3:49165321-49165340 Msa0953230:intron 35.0%
GGAGTGAGAAATATTAATGC+TGG - chr6_3:49165399-49165418 Msa0953230:intron 35.0%
TAAGTTCAATGGCATCAGTT+AGG - chr6_3:49165490-49165509 Msa0953230:intron 35.0%
AAATAGGGAAATAGCATGTG+GGG - chr6_3:49165968-49165987 Msa0953230:intron 35.0%
GTAATTCTCAGAAACAATGC+AGG - chr6_3:49166228-49166247 Msa0953230:intron 35.0%
ACTCATGCTCAAGTCAATAA+TGG - chr6_3:49166771-49166790 Msa0953230:CDS 35.0%
GAAAAGTGATATGTACCTTG+AGG - chr6_3:49166824-49166843 Msa0953230:intron 35.0%
AAGCAAGTTCACCCTTAAAT+AGG - chr6_3:49166850-49166869 Msa0953230:intron 35.0%
!! GTTTATGATTTGTTCTGCAC+CGG + chr6_3:49167070-49167089 None:intergenic 35.0%
! TGTCCCATGTCACTTATATA+AGG - chr6_3:49167200-49167219 Msa0953230:intron 35.0%
TCACTCGATGCATGTTAATT+TGG - chr6_3:49167254-49167273 Msa0953230:intron 35.0%
ACTACTAATTAGGGAGTCTA+AGG + chr6_3:49167370-49167389 None:intergenic 35.0%
TATCCTTTCAAGGTTGAACT+AGG + chr6_3:49167400-49167419 None:intergenic 35.0%
! ATCTTTGGTAACTGTACACA+AGG + chr6_3:49167550-49167569 None:intergenic 35.0%
TTGTGTACAGTTACCAAAGA+TGG - chr6_3:49167549-49167568 Msa0953230:intron 35.0%
!! TCTTACCGGTTCTATAAGAT+AGG - chr6_3:49167737-49167756 Msa0953230:CDS 35.0%
AGCTACCTATCTTATAGAAC+CGG + chr6_3:49167745-49167764 None:intergenic 35.0%
GTCAACTGAACTAAACTTAC+GGG - chr6_3:49168025-49168044 Msa0953230:intron 35.0%
TTTCATCTTGATCAGGAAGA+TGG - chr6_3:49168134-49168153 Msa0953230:intron 35.0%
TTCATCTTGATCAGGAAGAT+GGG - chr6_3:49168135-49168154 Msa0953230:intron 35.0%
AACCTCACGACTTACAATAT+TGG + chr6_3:49168204-49168223 None:intergenic 35.0%
AATATTGTAAGTCGTGAGGT+TGG - chr6_3:49168203-49168222 Msa0953230:intron 35.0%
TTCCTTATAATAGTGACAGG+AGG - chr6_3:49168408-49168427 Msa0953230:intron 35.0%
TCCTTATAATAGTGACAGGA+GGG - chr6_3:49168409-49168428 Msa0953230:intron 35.0%
TTTACCCTCTAGTATATAGG+GGG - chr6_3:49168520-49168539 Msa0953230:intron 35.0%
GAGATCAAACTCACATATAC+CGG - chr6_3:49168599-49168618 Msa0953230:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr6_3:49168725-49168744 None:intergenic 35.0%
TGTCAATTAAATTGGAACGG+AGG - chr6_3:49168906-49168925 Msa0953230:intron 35.0%
!! CACTAATACCCTTCACTTTT+GGG + chr6_3:49169300-49169319 None:intergenic 35.0%
!! CTGATTTGGCAAAGAAACTT+TGG - chr6_3:49169374-49169393 Msa0953230:intron 35.0%
TGAAACAGTTGTTTGTGATG+AGG - chr6_3:49169548-49169567 Msa0953230:CDS 35.0%
TACATTATCATCCTCTGCTG+AGG - chr6_3:49163646-49163665 Msa0953230:three_prime_UTR 40.0%
AAGTTACTCATGGGATCGAT+GGG - chr6_3:49163711-49163730 Msa0953230:three_prime_UTR 40.0%
AAACACTGGAGAAAACAGGA+GGG + chr6_3:49164225-49164244 None:intergenic 40.0%
TAAACACTGGAGAAAACAGG+AGG + chr6_3:49164226-49164245 None:intergenic 40.0%
TTGGAACATCGTTGTTCTCT+AGG - chr6_3:49164389-49164408 Msa0953230:intron 40.0%
TGGAACATCGTTGTTCTCTA+GGG - chr6_3:49164390-49164409 Msa0953230:intron 40.0%
! TTCTCTAGGGATGGACAAAT+GGG - chr6_3:49164403-49164422 Msa0953230:intron 40.0%
! CAAATGGGCTCATACTAGTT+TGG - chr6_3:49164418-49164437 Msa0953230:intron 40.0%
! AAACTGCAGATTGGGACTTT+TGG + chr6_3:49164445-49164464 None:intergenic 40.0%
! TCGACCGTCTAAAACCAATT+TGG - chr6_3:49164687-49164706 Msa0953230:intron 40.0%
CAAACCAAACGAGTCCAAAT+TGG + chr6_3:49164704-49164723 None:intergenic 40.0%
CAATTTGGACTCGTTTGGTT+TGG - chr6_3:49164702-49164721 Msa0953230:intron 40.0%
!! TTTGGTTTGGTTGGTATGGA+TGG - chr6_3:49164715-49164734 Msa0953230:intron 40.0%
! GAATTGCACACGAGCATTTT+TGG + chr6_3:49164815-49164834 None:intergenic 40.0%
! AAATAGGGTGTTTAGGGTGA+AGG + chr6_3:49164876-49164895 None:intergenic 40.0%
ACCCTAAACACCCTATTTCA+AGG - chr6_3:49164878-49164897 Msa0953230:intron 40.0%
ACAGGAACAACACATGGTAT+TGG - chr6_3:49165327-49165346 Msa0953230:intron 40.0%
CGTGGTGTTCATGTGATTAT+GGG - chr6_3:49165378-49165397 Msa0953230:intron 40.0%
AATGTTCAATGGAAGAGCAG+TGG + chr6_3:49165538-49165557 None:intergenic 40.0%
AAGGTCTTTAACAAGTGCCA+TGG - chr6_3:49165631-49165650 Msa0953230:CDS 40.0%
TTTAACAAGTGCCATGGACT+GGG - chr6_3:49165637-49165656 Msa0953230:CDS 40.0%
AAATGCTAACGAGTGCTTCA+GGG + chr6_3:49166028-49166047 None:intergenic 40.0%
! TTGTCTTTGGAGAGTGTGAA+AGG + chr6_3:49166267-49166286 None:intergenic 40.0%
GCTAGTGAAAGCAAGAAAGA+AGG - chr6_3:49166481-49166500 Msa0953230:intron 40.0%
AATCTCTCATCTGATGGTCA+CGG - chr6_3:49166514-49166533 Msa0953230:intron 40.0%
CACGGTTATACATATCCTGA+AGG - chr6_3:49166532-49166551 Msa0953230:intron 40.0%
GAATGGTTGAGTAGCAATTG+TGG - chr6_3:49166693-49166712 Msa0953230:CDS 40.0%
TAACATGCATCGAGTGACTT+TGG + chr6_3:49167251-49167270 None:intergenic 40.0%
! AGCATGCATGTTTGGAATCA+CGG + chr6_3:49167315-49167334 None:intergenic 40.0%
TAGCCTAGTTCAACCTTGAA+AGG - chr6_3:49167394-49167413 Msa0953230:intron 40.0%
TGTACAGTTACCAAAGATGG+AGG - chr6_3:49167552-49167571 Msa0953230:intron 40.0%
GTACAGTTACCAAAGATGGA+GGG - chr6_3:49167553-49167572 Msa0953230:intron 40.0%
TCTTCTGCACTCTATCTTAC+CGG - chr6_3:49167723-49167742 Msa0953230:CDS 40.0%
TCTATATCGAACAGTCTCAC+AGG - chr6_3:49167936-49167955 Msa0953230:intron 40.0%
TCATCTTGATCAGGAAGATG+GGG - chr6_3:49168136-49168155 Msa0953230:intron 40.0%
TCTCTTCATCCAGGATGTAT+TGG - chr6_3:49168176-49168195 Msa0953230:intron 40.0%
!! ATATTGGTGCCAATACATCC+TGG + chr6_3:49168188-49168207 None:intergenic 40.0%
CACCAATATTGTAAGTCGTG+AGG - chr6_3:49168199-49168218 Msa0953230:intron 40.0%
TCCCTCCTGTCACTATTATA+AGG + chr6_3:49168413-49168432 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr6_3:49168724-49168743 None:intergenic 40.0%
ACAGATCTACGAAAAAGCCT+AGG - chr6_3:49169107-49169126 Msa0953230:intron 40.0%
CAGATCTACGAAAAAGCCTA+GGG - chr6_3:49169108-49169127 Msa0953230:intron 40.0%
AACACTGTTGAAATACCTGC+TGG + chr6_3:49169154-49169173 None:intergenic 40.0%
! AGCATTGAACCCAAAAGTGA+AGG - chr6_3:49169288-49169307 Msa0953230:intron 40.0%
GCATTGAACCCAAAAGTGAA+GGG - chr6_3:49169289-49169308 Msa0953230:intron 40.0%
! CCACTAATACCCTTCACTTT+TGG + chr6_3:49169301-49169320 None:intergenic 40.0%
!! CCAAAAGTGAAGGGTATTAG+TGG - chr6_3:49169298-49169317 Msa0953230:intron 40.0%
! ACAGGCAAATGACACTGATT+TGG - chr6_3:49169360-49169379 Msa0953230:intron 40.0%
AGGTATGTGAAGAGTGAGAG+TGG + chr6_3:49163598-49163617 None:intergenic 45.0%
AGGACTCATGCTGTGTGTAA+AGG + chr6_3:49163618-49163637 None:intergenic 45.0%
AGGAATAACTTCCTCAGCAG+AGG + chr6_3:49163660-49163679 None:intergenic 45.0%
TACATTATCTTCCACCGCAG+AGG - chr6_3:49163688-49163707 Msa0953230:three_prime_UTR 45.0%
GAAGTTACTCATGGGATCGA+TGG - chr6_3:49163710-49163729 Msa0953230:three_prime_UTR 45.0%
! ACATCGTTGTTCTCTAGGGA+TGG - chr6_3:49164394-49164413 Msa0953230:intron 45.0%
! GTTCTCTAGGGATGGACAAA+TGG - chr6_3:49164402-49164421 Msa0953230:intron 45.0%
AGCGGTAGTTAACTATCGCA+AGG - chr6_3:49164583-49164602 Msa0953230:intron 45.0%
GCGGTAGTTAACTATCGCAA+GGG - chr6_3:49164584-49164603 Msa0953230:intron 45.0%
!! TTGGACTCGTTTGGTTTGGT+TGG - chr6_3:49164706-49164725 Msa0953230:intron 45.0%
!! CTCGTTTGGTTTGGTTGGTA+TGG - chr6_3:49164711-49164730 Msa0953230:intron 45.0%
AATCACATGAACACCACGCA+AGG + chr6_3:49165376-49165395 None:intergenic 45.0%
GCGTGGTGTTCATGTGATTA+TGG - chr6_3:49165377-49165396 Msa0953230:intron 45.0%
CTTTAACAAGTGCCATGGAC+TGG - chr6_3:49165636-49165655 Msa0953230:CDS 45.0%
! TTAACAAGTGCCATGGACTG+GGG - chr6_3:49165638-49165657 Msa0953230:CDS 45.0%
CCAGGGGCAGATCTATTTAA+GGG + chr6_3:49166005-49166024 None:intergenic 45.0%
GAAATGCTAACGAGTGCTTC+AGG + chr6_3:49166029-49166048 None:intergenic 45.0%
! TCTTTGGAGAGTGTGAAAGG+TGG + chr6_3:49166264-49166283 None:intergenic 45.0%
CATGATATGTCCGGTGAGAA+CGG - chr6_3:49166649-49166668 Msa0953230:intron 45.0%
GAACGGTTGAGTAGCAATTG+TGG - chr6_3:49166666-49166685 Msa0953230:intron 45.0%
GTAGCAATTGTGGCAGAGAA+TGG - chr6_3:49166676-49166695 Msa0953230:CDS 45.0%
AGTCTTTGCAGTGGAACGAA+AGG - chr6_3:49166729-49166748 Msa0953230:CDS 45.0%
ACCAAAGCGCGCCTATTTAA+GGG + chr6_3:49166864-49166883 None:intergenic 45.0%
CTTTGGTCATAACCGTCTCT+GGG - chr6_3:49166877-49166896 Msa0953230:intron 45.0%
GGGTTATGCGACGTATGATT+AGG - chr6_3:49166897-49166916 Msa0953230:intron 45.0%
ATGCGACGTATGATTAGGAG+CGG - chr6_3:49166902-49166921 Msa0953230:intron 45.0%
ATTCCAAACATGCATGCTCG+TGG - chr6_3:49167317-49167336 Msa0953230:intron 45.0%
ACTGCAAACTCTCTTCATCC+AGG - chr6_3:49168167-49168186 Msa0953230:intron 45.0%
CTGTTGGGATATTTACCTGC+TGG + chr6_3:49168239-49168258 None:intergenic 45.0%
CAGCAGGTAAATATCCCAAC+AGG - chr6_3:49168237-49168256 Msa0953230:intron 45.0%
CCATCCCCCTATATACTAGA+GGG + chr6_3:49168527-49168546 None:intergenic 45.0%
CCTCTAGTATATAGGGGGAT+GGG - chr6_3:49168525-49168544 Msa0953230:intron 45.0%
!! ACGGAGGGAGTACCAATTAA+GGG + chr6_3:49168701-49168720 None:intergenic 45.0%
ATGAGTAACTTCCTCTGCGG+TGG + chr6_3:49163702-49163721 None:intergenic 50.0%
ACCGCAGAGGAAGTTACTCA+TGG - chr6_3:49163701-49163720 Msa0953230:three_prime_UTR 50.0%
CCCATGAGTAACTTCCTCTG+CGG + chr6_3:49163705-49163724 None:intergenic 50.0%
CCGCAGAGGAAGTTACTCAT+GGG - chr6_3:49163702-49163721 Msa0953230:three_prime_UTR 50.0%
ACTCATGGGATCGATGGGAA+TGG - chr6_3:49163716-49163735 Msa0953230:three_prime_UTR 50.0%
ACATGCCACAAAAGTGGGAG+TGG - chr6_3:49164185-49164204 Msa0953230:intron 50.0%
!! CACTTCCACTCCCACTTTTG+TGG + chr6_3:49164193-49164212 None:intergenic 50.0%
CACAAAAGTGGGAGTGGAAG+TGG - chr6_3:49164191-49164210 Msa0953230:intron 50.0%
AAAGTGGGAGTGGAAGTGGA+TGG - chr6_3:49164195-49164214 Msa0953230:intron 50.0%
!! AGCTTCTAAGATGGCAACCG+CGG + chr6_3:49164470-49164489 None:intergenic 50.0%
GGCGGTTGTTAACTACTGCT+TGG + chr6_3:49164544-49164563 None:intergenic 50.0%
CCCTTAAATAGATCTGCCCC+TGG - chr6_3:49166002-49166021 Msa0953230:intron 50.0%
GCCAGGGGCAGATCTATTTA+AGG + chr6_3:49166006-49166025 None:intergenic 50.0%
TGCTACTCAACCGTTCTCAC+CGG + chr6_3:49166662-49166681 None:intergenic 50.0%
ACTGCAAAGACTCATCACCG+CGG + chr6_3:49166721-49166740 None:intergenic 50.0%
! GTGAACTTGCTTCACCCTCA+AGG + chr6_3:49166842-49166861 None:intergenic 50.0%
ACCCTTAAATAGGCGCGCTT+TGG - chr6_3:49166860-49166879 Msa0953230:intron 50.0%
GACCAAAGCGCGCCTATTTA+AGG + chr6_3:49166865-49166884 None:intergenic 50.0%
GCTTTGGTCATAACCGTCTC+TGG - chr6_3:49166876-49166895 Msa0953230:intron 50.0%
TACGTCGCATAACCCAGAGA+CGG + chr6_3:49166892-49166911 None:intergenic 50.0%
CCTTAGGGATCTGCACTCAA+AGG + chr6_3:49167003-49167022 None:intergenic 50.0%
CCTTTGAGTGCAGATCCCTA+AGG - chr6_3:49167000-49167019 Msa0953230:CDS 50.0%
TTGAGTGCAGATCCCTAAGG+CGG - chr6_3:49167003-49167022 Msa0953230:CDS 50.0%
TCCCTAAGGCGGTGTATCTT+TGG - chr6_3:49167014-49167033 Msa0953230:intron 50.0%
GCCAAAGATACACCGCCTTA+GGG + chr6_3:49167018-49167037 None:intergenic 50.0%
! AGTGTGGTTGGTCATGTGAC+CGG - chr6_3:49167048-49167067 Msa0953230:intron 50.0%
! TACCAAAGATGGAGGGCGTA+TGG - chr6_3:49167560-49167579 Msa0953230:intron 50.0%
CTTGATCAGGAAGATGGGGT+TGG - chr6_3:49168140-49168159 Msa0953230:intron 50.0%
GTTGGTCAAACTATGCCAGC+AGG - chr6_3:49168221-49168240 Msa0953230:intron 50.0%
CCCTCTAGTATATAGGGGGA+TGG - chr6_3:49168524-49168543 Msa0953230:intron 50.0%
CCCATCCCCCTATATACTAG+AGG + chr6_3:49168528-49168547 None:intergenic 50.0%
!! GACGGAGGGAGTACCAATTA+AGG + chr6_3:49168702-49168721 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr6_3:49168720-49168739 None:intergenic 50.0%
TGTTGCTGCTCCCTACAATG+AGG + chr6_3:49169257-49169276 None:intergenic 50.0%
!! GTGTCATTTGCCTGTGAGCT+TGG + chr6_3:49169355-49169374 None:intergenic 50.0%
CCGCGGAGAAACTGCAGATT+GGG + chr6_3:49164453-49164472 None:intergenic 55.0%
CCCAATCTGCAGTTTCTCCG+CGG - chr6_3:49164450-49164469 Msa0953230:intron 55.0%
ACCGCGGAGAAACTGCAGAT+TGG + chr6_3:49164454-49164473 None:intergenic 55.0%
GCAAGAGTTCTTGCCTTGCG+TGG - chr6_3:49165360-49165379 Msa0953230:intron 55.0%
TCTAGATCCACCCCAGTCCA+TGG + chr6_3:49165651-49165670 None:intergenic 55.0%
TAACGAGTGCTTCAGGGCCA+GGG + chr6_3:49166022-49166041 None:intergenic 55.0%
GAGTAGCAATTGTGGCACCG+CGG - chr6_3:49166701-49166720 Msa0953230:CDS 55.0%
GCGGTGATGAGTCTTTGCAG+TGG - chr6_3:49166720-49166739 Msa0953230:CDS 55.0%
CGTATGATTAGGAGCGGAGC+AGG - chr6_3:49166908-49166927 Msa0953230:intron 55.0%
ACGTGTGCACTGTGCCACAT+AGG + chr6_3:49166969-49166988 None:intergenic 55.0%
GGCCAAAGATACACCGCCTT+AGG + chr6_3:49167019-49167038 None:intergenic 55.0%
TTTGGCCACGTGTCGAAGTG+TGG - chr6_3:49167032-49167051 Msa0953230:intron 55.0%
ACCAACCACACTTCGACACG+TGG + chr6_3:49167040-49167059 None:intergenic 55.0%
CGACCACGAGCATGCATGTT+TGG + chr6_3:49167323-49167342 None:intergenic 55.0%
GACCATACGCCCTCCATCTT+TGG + chr6_3:49167565-49167584 None:intergenic 55.0%
TAGGGTCGGAGTTCGAACAC+TGG + chr6_3:49167984-49168003 None:intergenic 55.0%
AATTGGTACTCCCTCCGTCC+CGG - chr6_3:49168703-49168722 Msa0953230:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr6_3:49168716-49168735 None:intergenic 55.0%
TGTGGCTGAACCAAGCTCAC+AGG - chr6_3:49169342-49169361 Msa0953230:intron 55.0%
!! ACAAGTGCCATGGACTGGGG+TGG - chr6_3:49165641-49165660 Msa0953230:CDS 60.0%
AACGAGTGCTTCAGGGCCAG+GGG + chr6_3:49166021-49166040 None:intergenic 60.0%
CTAACGAGTGCTTCAGGGCC+AGG + chr6_3:49166023-49166042 None:intergenic 60.0%
!! GTGGAACGAAAGGTGCCTCC+AGG - chr6_3:49166739-49166758 Msa0953230:CDS 60.0%
!! ATGAGTGCTGACGTGCCTGG+AGG + chr6_3:49166757-49166776 None:intergenic 60.0%
!! AGCATGAGTGCTGACGTGCC+TGG + chr6_3:49166760-49166779 None:intergenic 60.0%
TGTGTTGTGATCCTCGCGCG+AGG - chr6_3:49166936-49166955 Msa0953230:intron 60.0%
GTGTTGTGATCCTCGCGCGA+GGG - chr6_3:49166937-49166956 Msa0953230:intron 60.0%
GCCACGTGTCGAAGTGTGGT+TGG - chr6_3:49167036-49167055 Msa0953230:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr6_3:49168717-49168736 None:intergenic 60.0%
GTGGCACAGTGCACACGTGC+TGG - chr6_3:49166971-49166990 Msa0953230:CDS 65.0%
GGGGATGGGCGCTCTTGCTA+AGG - chr6_3:49168539-49168558 Msa0953230:intron 65.0%
!! CGCGAGGGAGCGCTCCTATG+TGG - chr6_3:49166952-49166971 Msa0953230:CDS 70.0%
!! TAGGAGCGCTCCCTCGCGCG+AGG + chr6_3:49166950-49166969 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 49163589 49169673 49163589 ID=Msa0953230;Name=Msa0953230
chr6_3 mRNA 49163589 49169673 49163589 ID=Msa0953230-mRNA-1;Parent=Msa0953230;Name=Msa0953230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=40|0.87|0.88|1|0.62|0.77|9|250|307
chr6_3 exon 49163589 49163997 49163589 ID=Msa0953230-mRNA-1:exon:10766;Parent=Msa0953230-mRNA-1
chr6_3 exon 49164105 49164151 49164105 ID=Msa0953230-mRNA-1:exon:10765;Parent=Msa0953230-mRNA-1
chr6_3 exon 49165071 49165113 49165071 ID=Msa0953230-mRNA-1:exon:10764;Parent=Msa0953230-mRNA-1
chr6_3 exon 49165625 49165703 49165625 ID=Msa0953230-mRNA-1:exon:10763;Parent=Msa0953230-mRNA-1
chr6_3 exon 49166675 49166828 49166675 ID=Msa0953230-mRNA-1:exon:10762;Parent=Msa0953230-mRNA-1
chr6_3 exon 49166944 49167023 49166944 ID=Msa0953230-mRNA-1:exon:10761;Parent=Msa0953230-mRNA-1
chr6_3 exon 49167700 49167931 49167700 ID=Msa0953230-mRNA-1:exon:10760;Parent=Msa0953230-mRNA-1
chr6_3 exon 49169404 49169419 49169404 ID=Msa0953230-mRNA-1:exon:10759;Parent=Msa0953230-mRNA-1
chr6_3 exon 49169520 49169673 49169520 ID=Msa0953230-mRNA-1:exon:10758;Parent=Msa0953230-mRNA-1
chr6_3 five_prime_UTR 49169634 49169673 49169634 ID=Msa0953230-mRNA-1:five_prime_utr;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49169520 49169633 49169520 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49169404 49169419 49169404 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49167700 49167931 49167700 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49166944 49167023 49166944 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49166675 49166828 49166675 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49165625 49165703 49165625 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49165071 49165113 49165071 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49164105 49164151 49164105 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 CDS 49163839 49163997 49163839 ID=Msa0953230-mRNA-1:cds;Parent=Msa0953230-mRNA-1
chr6_3 three_prime_UTR 49163589 49163838 49163589 ID=Msa0953230-mRNA-1:three_prime_utr;Parent=Msa0953230-mRNA-1
Gene Sequence

>Msa0953230

ATGAGTCCTTCTGAGTTTACATTATCATCCTCTGCTGAGGAAGTTATTCCTTCTGAGTTTACATTATCTTCCACCGCAGAGGAAGTTACTCATGGGATCGATGGGAATGGTCTTATTGCGATTGTTACAGGAACAACACATGGTATTGGCATCGAGACTGCAAGAGTTCTTGCCTTGCGTGGTGTTCATGTGATTATGGGAGTGAGAAATATTAATGCTGGAAAAATTGTTAGAGAAGAAATACTTAAGGAGATTCCTAAAGCTAAAGTTGATGTGATGGAGTTAGATTTAAGTTCAATGGCATCAGTTAGGAAATTTGCATCAGAATTCAATTCCACTGCTCTTCCATTGAACATTCTCATAAACAATGCAGGAATTTGTGCACCACCTTTCACACTCTCCAAAGACAACATTGAACTACAATTTGCCACAAATCATTTAGGTCATTTTCTTTTAACAAATCTTTTGTTAGACACTATGAAGAAAACAGCTAGTGAAAGCAAGAAAGAAGGAAGAATTATTAATCTCTCATCTGATGGTCACGGTTATACATATCCTGAAGGAATCCTTTTTGATAACATTAATGATGAATCAAGTTACCAAAGATGGAGGGCGTATGGTCAATCTAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGAAATTTCAAGGAAGATGGGGTTGGTATTACTGCAAACTCTCTTCATCCAGGATATCTACGAAAAAGCCTAGGGAAAATTATAGTTAAAACTATCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGAACCCAAAAGTGAAGGGTATTAGTGGAAAGTTTTTTTGTGACAGTAATGTGGCTGAACCAAGCTCACAGGCAAATGACACTGATTTGGCAAAGAAACTTTGGGATTTCAGCATGAAATTAATTAAATAG

Protein sequence

>Msa0953230

MSPSEFTLSSSAEEVIPSEFTLSSTAEEVTHGIDGNGLIAIVTGTTHGIGIETARVLALRGVHVIMGVRNINAGKIVREEILKEIPKAKVDVMELDLSSMASVRKFASEFNSTALPLNILINNAGICAPPFTLSKDNIELQFATNHLGHFLLTNLLLDTMKKTASESKKEGRIINLSSDGHGYTYPEGILFDNINDESSYQRWRAYGQSKLANILHANELARNFKEDGVGITANSLHPGYLRKSLGKIIVKTIQQGAATTCYVALNPKVKGISGKFFCDSNVAEPSSQANDTDLAKKLWDFSMKLIK*