Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129360 | XP_003626441.2 | 94.413 | 358 | 10 | 1 | 2 | 359 | 4 | 351 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129360 | sp|C6TBN2|AKR1_SOYBN | 75.910 | 357 | 71 | 5 | 6 | 359 | 2 | 346 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129360 | G7L1W1 | 94.413 | 358 | 10 | 1 | 2 | 359 | 4 | 351 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046890 | Msa1129360 | 0.855168 | 7.559980e-62 | -8.615850e-47 |
| Msa0187510 | Msa1129360 | 0.826062 | 3.332684e-54 | -8.615850e-47 |
| Msa0208480 | Msa1129360 | 0.831921 | 1.268607e-55 | -8.615850e-47 |
| Msa0208510 | Msa1129360 | 0.853558 | 2.206810e-61 | -8.615850e-47 |
| Msa0209190 | Msa1129360 | 0.813677 | 2.267945e-51 | -8.615850e-47 |
| Msa0238600 | Msa1129360 | 0.807714 | 4.416013e-50 | -8.615850e-47 |
| Msa0481660 | Msa1129360 | 0.957634 | 1.689072e-115 | -8.615850e-47 |
| Msa0989000 | Msa1129360 | 0.809913 | 1.496123e-50 | -8.615850e-47 |
| Msa1038400 | Msa1129360 | 0.833868 | 4.164450e-56 | -8.615850e-47 |
| Msa0276200 | Msa1129360 | 0.801034 | 1.089450e-48 | -8.615850e-47 |
| Msa0338760 | Msa1129360 | 0.820945 | 5.244752e-53 | -8.615850e-47 |
| Msa1129360 | Msa1350480 | 0.849910 | 2.387171e-60 | -8.615850e-47 |
| Msa0915360 | Msa1129360 | 0.832366 | 9.848466e-56 | -8.615850e-47 |
| Msa0953230 | Msa1129360 | 0.818796 | 1.626130e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129360 | MtrunA17_Chr7g0274071 | 94.413 | 358 | 10 | 1 | 2 | 359 | 4 | 351 | 0.0 | 694 |
| Msa1129360 | MtrunA17_Chr7g0274061 | 80.952 | 357 | 50 | 4 | 6 | 354 | 4 | 350 | 0.0 | 580 |
| Msa1129360 | MtrunA17_Chr1g0204651 | 62.428 | 346 | 117 | 3 | 11 | 353 | 5 | 340 | 4.36e-164 | 462 |
| Msa1129360 | MtrunA17_Chr7g0274041 | 63.689 | 347 | 111 | 5 | 11 | 353 | 7 | 342 | 2.60e-162 | 457 |
| Msa1129360 | MtrunA17_Chr7g0221791 | 56.725 | 342 | 129 | 7 | 14 | 352 | 7 | 332 | 2.62e-135 | 389 |
| Msa1129360 | MtrunA17_Chr7g0222171 | 55.652 | 345 | 134 | 7 | 11 | 352 | 4 | 332 | 2.63e-133 | 384 |
| Msa1129360 | MtrunA17_Chr7g0222121 | 51.596 | 376 | 129 | 8 | 14 | 352 | 7 | 366 | 6.55e-128 | 371 |
| Msa1129360 | MtrunA17_Chr7g0274081 | 78.173 | 197 | 39 | 2 | 162 | 354 | 2 | 198 | 2.14e-110 | 320 |
| Msa1129360 | MtrunA17_Chr7g0274091 | 82.979 | 94 | 16 | 0 | 7 | 100 | 5 | 98 | 2.43e-51 | 167 |
| Msa1129360 | MtrunA17_Chr7g0221781 | 52.713 | 129 | 59 | 2 | 11 | 139 | 4 | 130 | 8.38e-40 | 137 |
| Msa1129360 | MtrunA17_Chr7g0221771 | 50.909 | 110 | 50 | 2 | 243 | 352 | 1 | 106 | 3.18e-35 | 125 |
| Msa1129360 | MtrunA17_Chr7g0222141 | 51.376 | 109 | 52 | 1 | 133 | 240 | 31 | 139 | 6.32e-34 | 123 |
| Msa1129360 | MtrunA17_Chr1g0169691 | 29.664 | 327 | 201 | 10 | 15 | 326 | 5 | 317 | 4.10e-29 | 114 |
| Msa1129360 | MtrunA17_Chr7g0222151 | 58.667 | 75 | 31 | 0 | 244 | 318 | 2 | 76 | 1.55e-27 | 103 |
| Msa1129360 | MtrunA17_Chr3g0095421 | 29.464 | 336 | 189 | 13 | 14 | 324 | 38 | 350 | 1.10e-26 | 108 |
| Msa1129360 | MtrunA17_Chr3g0127491 | 28.049 | 328 | 192 | 13 | 23 | 328 | 46 | 351 | 2.63e-25 | 105 |
| Msa1129360 | MtrunA17_Chr8g0380261 | 27.193 | 342 | 205 | 13 | 20 | 323 | 48 | 383 | 6.95e-25 | 104 |
| Msa1129360 | MtrunA17_Chr1g0167421 | 28.443 | 334 | 190 | 13 | 16 | 310 | 66 | 389 | 1.46e-23 | 100 |
| Msa1129360 | MtrunA17_Chr4g0049341 | 27.632 | 304 | 181 | 10 | 16 | 309 | 6 | 280 | 3.96e-20 | 89.7 |
| Msa1129360 | MtrunA17_Chr4g0018921 | 25.914 | 301 | 172 | 10 | 35 | 322 | 20 | 282 | 4.91e-15 | 75.1 |
| Msa1129360 | MtrunA17_Chr7g0221801 | 53.125 | 64 | 29 | 1 | 16 | 79 | 9 | 71 | 8.00e-15 | 69.3 |
| Msa1129360 | MtrunA17_Chr3g0121001 | 27.273 | 297 | 163 | 13 | 52 | 333 | 44 | 302 | 4.22e-13 | 69.3 |
| Msa1129360 | MtrunA17_Chr6g0480011 | 26.426 | 333 | 176 | 15 | 11 | 322 | 6 | 290 | 9.42e-12 | 65.5 |
| Msa1129360 | MtrunA17_Chr4g0036051 | 28.829 | 333 | 169 | 15 | 14 | 324 | 3 | 289 | 1.51e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129360 | AT1G60710.1 | 58.841 | 345 | 126 | 5 | 11 | 352 | 7 | 338 | 3.67e-141 | 404 |
| Msa1129360 | AT1G60690.1 | 57.971 | 345 | 129 | 5 | 11 | 352 | 7 | 338 | 1.57e-140 | 402 |
| Msa1129360 | AT1G60680.1 | 54.958 | 353 | 142 | 6 | 11 | 359 | 7 | 346 | 3.18e-136 | 392 |
| Msa1129360 | AT1G60750.1 | 55.977 | 343 | 123 | 5 | 11 | 352 | 8 | 323 | 1.07e-135 | 390 |
| Msa1129360 | AT1G60730.1 | 55.942 | 345 | 136 | 5 | 11 | 352 | 7 | 338 | 7.12e-135 | 388 |
| Msa1129360 | AT1G60730.3 | 54.930 | 355 | 144 | 6 | 11 | 352 | 7 | 358 | 8.45e-134 | 386 |
| Msa1129360 | AT1G10810.1 | 53.846 | 351 | 146 | 5 | 11 | 358 | 7 | 344 | 5.41e-127 | 368 |
| Msa1129360 | AT1G10810.3 | 55.789 | 285 | 111 | 4 | 77 | 358 | 20 | 292 | 3.12e-107 | 316 |
| Msa1129360 | AT1G60680.2 | 60.714 | 224 | 76 | 3 | 11 | 233 | 7 | 219 | 1.00e-93 | 280 |
| Msa1129360 | AT1G10810.2 | 56.118 | 237 | 87 | 3 | 11 | 247 | 7 | 226 | 1.49e-86 | 262 |
| Msa1129360 | AT1G60730.2 | 53.571 | 140 | 64 | 1 | 11 | 150 | 7 | 145 | 1.19e-45 | 154 |
| Msa1129360 | AT1G04690.1 | 30.351 | 313 | 187 | 10 | 15 | 312 | 5 | 301 | 6.80e-30 | 117 |
| Msa1129360 | AT1G06690.1 | 28.319 | 339 | 197 | 12 | 14 | 328 | 49 | 365 | 1.53e-27 | 112 |
| Msa1129360 | AT5G53580.1 | 28.571 | 336 | 186 | 13 | 21 | 329 | 45 | 353 | 2.44e-27 | 111 |
| Msa1129360 | AT4G33670.1 | 26.625 | 323 | 194 | 11 | 16 | 324 | 9 | 302 | 2.82e-22 | 96.3 |
| Msa1129360 | AT1G04420.1 | 27.072 | 362 | 220 | 15 | 1 | 324 | 46 | 401 | 3.83e-20 | 91.3 |
| Msa1129360 | AT2G21260.1 | 27.003 | 337 | 170 | 15 | 14 | 324 | 3 | 289 | 3.53e-14 | 72.8 |
| Msa1129360 | AT2G37760.4 | 28.986 | 276 | 137 | 12 | 48 | 304 | 29 | 264 | 1.81e-13 | 70.5 |
| Msa1129360 | AT2G37760.3 | 28.986 | 276 | 137 | 12 | 48 | 304 | 29 | 264 | 1.81e-13 | 70.5 |
| Msa1129360 | AT2G37760.5 | 28.986 | 276 | 137 | 12 | 48 | 304 | 29 | 264 | 2.12e-13 | 70.5 |
| Msa1129360 | AT2G37760.2 | 28.986 | 276 | 137 | 12 | 48 | 304 | 29 | 264 | 2.80e-13 | 70.1 |
| Msa1129360 | AT2G37760.1 | 28.986 | 276 | 137 | 12 | 48 | 304 | 29 | 264 | 2.80e-13 | 70.1 |
| Msa1129360 | AT2G21250.1 | 27.628 | 333 | 173 | 15 | 14 | 324 | 3 | 289 | 1.21e-12 | 68.2 |
| Msa1129360 | AT2G21260.2 | 27.897 | 233 | 121 | 9 | 112 | 324 | 16 | 221 | 1.24e-12 | 67.4 |
Find 103 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATCCCTTATTATTTA+TGG | 0.046291 | 7_3:+81344170 | None:intergenic |
| TTTGACACTGCTGATGTTTA+TGG | 0.130046 | 7_3:-81346821 | Msa1129360:CDS |
| CGATGGTGGGAATGAAATTT+TGG | 0.194348 | 7_3:-81346795 | Msa1129360:CDS |
| ATCCAGGTGGCTACAAAATT+TGG | 0.216306 | 7_3:-81346520 | Msa1129360:CDS |
| TCCCATACCACCGGCACTTC+TGG | 0.235548 | 7_3:+81346492 | None:intergenic |
| GTTGAGACCGTTGAAACTTT+TGG | 0.258801 | 7_3:+81344346 | None:intergenic |
| ACTTGGAACCCAAGGCTTTC+AGG | 0.279174 | 7_3:-81347058 | Msa1129360:intron |
| TGTGCTCTCCTTATTGTATC+AGG | 0.290458 | 7_3:+81346032 | None:intergenic |
| GATCCTCTTCCTGAAGAAAT+TGG | 0.293230 | 7_3:-81346887 | Msa1129360:CDS |
| TAGGTTTCAAAATTCGGTTT+AGG | 0.304608 | 7_3:-81346938 | Msa1129360:CDS |
| AGGTTTCAAAATTCGGTTTA+GGG | 0.317344 | 7_3:-81346937 | Msa1129360:CDS |
| AACAACTAAGATTGAGAATC+TGG | 0.331104 | 7_3:-81344512 | Msa1129360:CDS |
| TGTTTGTGTTGCGGTCATTT+TGG | 0.342332 | 7_3:+81347107 | None:intergenic |
| ACGGAAATGCCAATTTCTTC+AGG | 0.353338 | 7_3:+81346878 | None:intergenic |
| CGAAGATGTGCCGAGCTTCA+TGG | 0.363687 | 7_3:-81345654 | Msa1129360:intron |
| ACTGAATGCATGCTTAATTA+CGG | 0.364560 | 7_3:+81346859 | None:intergenic |
| CCTTTACCAAGTGGACTATA+TGG | 0.375897 | 7_3:+81345701 | None:intergenic |
| AATGCACTCGATCAAGAATA+AGG | 0.378365 | 7_3:-81344296 | Msa1129360:three_prime_UTR |
| TGATACAGAGAGCTTGGTAT+TGG | 0.380295 | 7_3:-81345731 | Msa1129360:intron |
| TTTCATTCCATAAATAATAA+GGG | 0.382154 | 7_3:-81344177 | Msa1129360:three_prime_UTR |
| AAAATTCGGTTTAGGGTGTA+TGG | 0.387624 | 7_3:-81346930 | Msa1129360:CDS |
| GAGGGAAAAGTTAAGTATAT+TGG | 0.391690 | 7_3:-81346071 | Msa1129360:CDS |
| ATCCTCCTCTGTGTGTCAGC+GGG | 0.392134 | 7_3:+81347245 | None:intergenic |
| AAGGATGTTGTGCCTATTCC+TGG | 0.394764 | 7_3:-81345194 | Msa1129360:intron |
| GGTAGGTGAACTTAAGAAAC+TGG | 0.404929 | 7_3:-81346099 | Msa1129360:CDS |
| ATCCAGAAGTGCCGGTGGTA+TGG | 0.406125 | 7_3:-81346494 | Msa1129360:CDS |
| AAGCCAGCCCTGATACAATA+AGG | 0.414769 | 7_3:-81346040 | Msa1129360:CDS |
| CCGCTTCCAAGCTGAGAACT+TGG | 0.415734 | 7_3:-81345315 | Msa1129360:CDS |
| CTACCTGCTATATCATCTTC+AGG | 0.426229 | 7_3:+81344421 | None:intergenic |
| GCACAACATCCTTGCCTTGT+TGG | 0.434088 | 7_3:+81345204 | None:intergenic |
| TCTATTTGTAAAGCTGTGAT+AGG | 0.434957 | 7_3:+81345999 | None:intergenic |
| TACAAATAGAGTGGTCTCTC+TGG | 0.437707 | 7_3:-81345986 | Msa1129360:CDS |
| GATTTGAATCAAATTCTCAT+AGG | 0.443062 | 7_3:-81344155 | Msa1129360:three_prime_UTR |
| GAAGTAAAATCTCTTTCAGT+TGG | 0.444389 | 7_3:-81344321 | Msa1129360:three_prime_UTR |
| TCCTTAACTGTATCCTCAAT+AGG | 0.446629 | 7_3:+81346361 | None:intergenic |
| AGGTGTGTTAGCAAACTTCC+AGG | 0.458381 | 7_3:+81344369 | None:intergenic |
| TCTCCTTATTGTATCAGGGC+TGG | 0.459103 | 7_3:+81346037 | None:intergenic |
| GCCTATTGAGGATACAGTTA+AGG | 0.469796 | 7_3:-81346362 | Msa1129360:CDS |
| CCATATAGTCCACTTGGTAA+AGG | 0.481916 | 7_3:-81345701 | Msa1129360:CDS |
| TTTCGTTGATACAGAGAGCT+TGG | 0.483556 | 7_3:-81345737 | Msa1129360:intron |
| ATGCCAATTTCTTCAGGAAG+AGG | 0.491719 | 7_3:+81346884 | None:intergenic |
| TCCAGAAGTGCCGGTGGTAT+GGG | 0.494504 | 7_3:-81346493 | Msa1129360:CDS |
| TTAGATGAATGTGAATGAAA+TGG | 0.500630 | 7_3:-81344124 | Msa1129360:three_prime_UTR |
| CAAGTTCTCAGCTTGGAAGC+GGG | 0.500791 | 7_3:+81345316 | None:intergenic |
| CTAATTCCTCATGTCACACT+TGG | 0.500882 | 7_3:-81347075 | Msa1129360:CDS |
| ATTAAGCATGCATTCAGTAA+AGG | 0.507501 | 7_3:-81346854 | Msa1129360:CDS |
| AGAACAAGGTTATATATGAT+AGG | 0.508380 | 7_3:-81345289 | Msa1129360:CDS |
| ACGAGATAGTTCCTCTCTGC+AGG | 0.515403 | 7_3:-81345947 | Msa1129360:intron |
| CGATACAACTGTGCCTATTG+AGG | 0.516697 | 7_3:-81346374 | Msa1129360:CDS |
| CCAAGTTCTCAGCTTGGAAG+CGG | 0.517525 | 7_3:+81345315 | None:intergenic |
| TCTTGACCAAGTTCTCAGCT+TGG | 0.528939 | 7_3:+81345309 | None:intergenic |
| GTGCTCTCCTTATTGTATCA+GGG | 0.530977 | 7_3:+81346033 | None:intergenic |
| TTCAGTTTGTGTTTGTGTTG+CGG | 0.534288 | 7_3:+81347098 | None:intergenic |
| ACCTTTGATTCCCATACCAC+CGG | 0.535653 | 7_3:+81346483 | None:intergenic |
| TCATTCACATTCATCTAACA+TGG | 0.540927 | 7_3:+81344129 | None:intergenic |
| ATGGAATGGATAGTTTATCC+TGG | 0.545904 | 7_3:-81344387 | Msa1129360:CDS |
| CTGCTCAGTTAGCATTAGCA+TGG | 0.546251 | 7_3:-81345232 | Msa1129360:CDS |
| AACAGCAGAACAAATGCAAA+CGG | 0.549192 | 7_3:+81344199 | None:intergenic |
| GGGTGTATGGCCCTCAGTGG+AGG | 0.554437 | 7_3:-81346917 | Msa1129360:CDS |
| ACTTAAGAAACTGGTGGACG+AGG | 0.557105 | 7_3:-81346090 | Msa1129360:CDS |
| TGATGATACCTGAAAGCCTT+GGG | 0.564484 | 7_3:+81347050 | None:intergenic |
| GCCGGTGGTATGGGAATCAA+AGG | 0.566837 | 7_3:-81346484 | Msa1129360:CDS |
| CACACCTCCAAAAGTTTCAA+CGG | 0.566882 | 7_3:-81344353 | Msa1129360:CDS |
| CATGTCACACTTGGAACCCA+AGG | 0.578508 | 7_3:-81347066 | Msa1129360:CDS |
| GTTCCTGAAGATGATATAGC+AGG | 0.578538 | 7_3:-81344424 | Msa1129360:CDS |
| TATGGGAATCAAAGGTTCAC+CGG | 0.579317 | 7_3:-81346476 | Msa1129360:CDS |
| TCCTCCTCTGTGTGTCAGCG+GGG | 0.579998 | 7_3:+81347246 | None:intergenic |
| ACTATCAGAAGAGGACATGC+GGG | 0.584092 | 7_3:-81344461 | Msa1129360:CDS |
| CAGCTTGAACGCACATACTC+CGG | 0.589412 | 7_3:+81346457 | None:intergenic |
| GAGAATCTGGATCAAAACCT+TGG | 0.589578 | 7_3:-81344499 | Msa1129360:CDS |
| TTTGGTATATCCAGAAGTGC+CGG | 0.592216 | 7_3:-81346502 | Msa1129360:CDS |
| TGAGAACTTGGTCAAGAACA+AGG | 0.594858 | 7_3:-81345303 | Msa1129360:CDS |
| AGCAGTGAAACTATCAGAAG+AGG | 0.596544 | 7_3:-81344470 | Msa1129360:CDS |
| ACTTCCCAGAGAAAAGATCC+AGG | 0.597330 | 7_3:-81346536 | Msa1129360:CDS |
| ATCATTATAACCTCCACTGA+GGG | 0.598759 | 7_3:+81346907 | None:intergenic |
| TAGTAGATACTACAATGGAA+TGG | 0.602882 | 7_3:-81344401 | Msa1129360:CDS |
| TATCCTCCTCTGTGTGTCAG+CGG | 0.607033 | 7_3:+81347244 | None:intergenic |
| CCTCCTCTGTGTGTCAGCGG+GGG | 0.607663 | 7_3:+81347247 | None:intergenic |
| ATGGGTACTCCAACAAGGCA+AGG | 0.611881 | 7_3:-81345213 | Msa1129360:CDS |
| GATGTTTATGGACTCGATGG+TGG | 0.612735 | 7_3:-81346809 | Msa1129360:CDS |
| ATTGTACCATATAGTCCACT+TGG | 0.612810 | 7_3:-81345707 | Msa1129360:CDS |
| AAGTTCTCAGCTTGGAAGCG+GGG | 0.613856 | 7_3:+81345317 | None:intergenic |
| AAATGCTATACCATGAAGCT+CGG | 0.620782 | 7_3:+81345644 | None:intergenic |
| ATGTTTATGGACTCGATGGT+GGG | 0.621527 | 7_3:-81346808 | Msa1129360:CDS |
| GAAAGTCTTAGCAAGAAGCA+TGG | 0.623738 | 7_3:-81345263 | Msa1129360:CDS |
| AACTATCAGAAGAGGACATG+CGG | 0.624051 | 7_3:-81344462 | Msa1129360:CDS |
| CTTAAGAAACTGGTGGACGA+GGG | 0.626596 | 7_3:-81346089 | Msa1129360:CDS |
| TCTCTGGACTCGCGACATTG+AGG | 0.626799 | 7_3:-81345970 | Msa1129360:CDS |
| GCTGATGTTTATGGACTCGA+TGG | 0.627574 | 7_3:-81346812 | Msa1129360:CDS |
| TGCTCAGTTAGCATTAGCAT+GGG | 0.633628 | 7_3:-81345231 | Msa1129360:CDS |
| GTGATGATACCTGAAAGCCT+TGG | 0.646270 | 7_3:+81347049 | None:intergenic |
| TCACAGCTTTACAAATAGAG+TGG | 0.653310 | 7_3:-81345995 | Msa1129360:CDS |
| TTAGGGTGTATGGCCCTCAG+TGG | 0.653469 | 7_3:-81346920 | Msa1129360:CDS |
| GAGGAGGATATCACAAAGCG+AGG | 0.654372 | 7_3:-81347231 | Msa1129360:five_prime_UTR |
| AGGTGAACTTAAGAAACTGG+TGG | 0.677931 | 7_3:-81346096 | Msa1129360:CDS |
| GTTTCACTGCTAATGCACCA+AGG | 0.681712 | 7_3:+81344482 | None:intergenic |
| TGGGTTCCAAGTGTGACATG+AGG | 0.682273 | 7_3:+81347069 | None:intergenic |
| GCAGGTAGTAGATACTACAA+TGG | 0.684368 | 7_3:-81344406 | Msa1129360:CDS |
| TTAGCATGGGTACTCCAACA+AGG | 0.686154 | 7_3:-81345218 | Msa1129360:CDS |
| GGTATATCCAGAAGTGCCGG+TGG | 0.696646 | 7_3:-81346499 | Msa1129360:CDS |
| GATCATTATAACCTCCACTG+AGG | 0.735023 | 7_3:+81346906 | None:intergenic |
| ACTCGAACTAACCTGCAGAG+AGG | 0.749098 | 7_3:+81345936 | None:intergenic |
| TCCCAGAGAAAAGATCCAGG+TGG | 0.757635 | 7_3:-81346533 | Msa1129360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGTTTTTATTATAGTT+AGG | + | chr7_3:81346465-81346484 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTGAAAATATTA+TGG | - | chr7_3:81346822-81346841 | Msa1129360:CDS | 10.0% |
| !! | CCTAAAATAAAAACAATAAT+AGG | + | chr7_3:81344421-81344440 | None:intergenic | 15.0% |
| !!! | CCTATTATTGTTTTTATTTT+AGG | - | chr7_3:81344418-81344437 | Msa1129360:CDS | 15.0% |
| !!! | TTATTTTAGGTTTCAAAATT+CGG | - | chr7_3:81344431-81344450 | Msa1129360:CDS | 15.0% |
| !! | CATTTATCATTCAAAAAAAA+TGG | - | chr7_3:81344708-81344727 | Msa1129360:intron | 15.0% |
| !!! | ATATCTTTTATGTTCTAAAT+TGG | - | chr7_3:81344736-81344755 | Msa1129360:intron | 15.0% |
| !! | AAAGAGAAAAAAATTCAAAT+TGG | + | chr7_3:81344784-81344803 | None:intergenic | 15.0% |
| !!! | ATAAACTTTTTAAAAAGGAA+AGG | + | chr7_3:81345998-81346017 | None:intergenic | 15.0% |
| !!! | ACAACATAAACTTTTTAAAA+AGG | + | chr7_3:81346003-81346022 | None:intergenic | 15.0% |
| !! | ATTATTGTAAAAATCTTTGA+TGG | - | chr7_3:81346240-81346259 | Msa1129360:intron | 15.0% |
| !! | AAAAAGCTGAAAATAAAATT+AGG | + | chr7_3:81346804-81346823 | None:intergenic | 15.0% |
| !!! | TTTTCATTCCATAAATAATA+AGG | - | chr7_3:81347197-81347216 | Msa1129360:intron | 15.0% |
| !! | TTTCATTCCATAAATAATAA+GGG | - | chr7_3:81347198-81347217 | Msa1129360:intron | 15.0% |
| !! | TATAGAGAGAAGAATATAAA+TGG | + | chr7_3:81344379-81344398 | None:intergenic | 20.0% |
| !! | TTAATATTTACTCATTTGTC+CGG | + | chr7_3:81344669-81344688 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTAAATTGGATA+CGG | - | chr7_3:81344742-81344761 | Msa1129360:intron | 20.0% |
| !!! | ATTCAAGTTTGAAGATTATT+TGG | - | chr7_3:81345210-81345229 | Msa1129360:CDS | 20.0% |
| !! | TAACAAGTTTATTGTGTTAT+AGG | - | chr7_3:81345255-81345274 | Msa1129360:CDS | 20.0% |
| !! | CTTGATCATGAATTAAATAT+TGG | - | chr7_3:81345840-81345859 | Msa1129360:intron | 20.0% |
| !!! | TTAAACTTGAGTAATTTTAC+AGG | - | chr7_3:81345907-81345926 | Msa1129360:intron | 20.0% |
| !!! | TAAACTTGAGTAATTTTACA+GGG | - | chr7_3:81345908-81345927 | Msa1129360:intron | 20.0% |
| !!! | TCTAACAAAAGTGTATTTTT+TGG | + | chr7_3:81346434-81346453 | None:intergenic | 20.0% |
| !! | TAACAATTTATCACATAGTT+TGG | - | chr7_3:81346506-81346525 | Msa1129360:CDS | 20.0% |
| !! | TAAAAATTTAGAAGAACCTT+TGG | + | chr7_3:81346739-81346758 | None:intergenic | 20.0% |
| !! | TTCAAATCCCTTATTATTTA+TGG | + | chr7_3:81347208-81347227 | None:intergenic | 20.0% |
| ! | GGTATATACATACTAATCAT+AGG | - | chr7_3:81344610-81344629 | Msa1129360:intron | 25.0% |
| ! | ATACATACTAATCATAGGTT+AGG | - | chr7_3:81344615-81344634 | Msa1129360:intron | 25.0% |
| !!! | ATTATTTGATTGTGTTGACT+AGG | - | chr7_3:81344806-81344825 | Msa1129360:intron | 25.0% |
| ! | CATGTTAATTCTTACTGATA+TGG | - | chr7_3:81345101-81345120 | Msa1129360:intron | 25.0% |
| ! | AAGTTTATTGTGTTATAGGT+AGG | - | chr7_3:81345259-81345278 | Msa1129360:CDS | 25.0% |
| !! | TTGAACAACTTTCATTGATT+AGG | - | chr7_3:81345525-81345544 | Msa1129360:intron | 25.0% |
| ! | ATGTCTTAACAGTAATTCTA+TGG | + | chr7_3:81345792-81345811 | None:intergenic | 25.0% |
| ! | GATCAATGCTATTACATAAT+TGG | + | chr7_3:81345816-81345835 | None:intergenic | 25.0% |
| !! | AAACTTGAGTAATTTTACAG+GGG | - | chr7_3:81345909-81345928 | Msa1129360:intron | 25.0% |
| ! | CATGTGAGAAAAAACAAATA+AGG | + | chr7_3:81345942-81345961 | None:intergenic | 25.0% |
| ! | AGAACAAGGTTATATATGAT+AGG | - | chr7_3:81346086-81346105 | Msa1129360:CDS | 25.0% |
| ! | TGTTCAGATTCATAAATAAG+AGG | + | chr7_3:81346304-81346323 | None:intergenic | 25.0% |
| ! | TATCACATAGTTTGGTTAAT+TGG | - | chr7_3:81346514-81346533 | Msa1129360:CDS | 25.0% |
| ! | ATGTAACGTTATAAATCGTA+CGG | - | chr7_3:81346608-81346627 | Msa1129360:intron | 25.0% |
| ! | CTCTTAATATATGAAATGCA+AGG | + | chr7_3:81346689-81346708 | None:intergenic | 25.0% |
| ! | AAGCTGAAAATAAAATTAGG+TGG | + | chr7_3:81346801-81346820 | None:intergenic | 25.0% |
| ! | GATTTGAATCAAATTCTCAT+AGG | - | chr7_3:81347220-81347239 | Msa1129360:intron | 25.0% |
| ! | TTAGATGAATGTGAATGAAA+TGG | - | chr7_3:81347251-81347270 | Msa1129360:five_prime_UTR | 25.0% |
| TCACTGCAAAATGCAAAAAT+TGG | - | chr7_3:81344221-81344240 | Msa1129360:three_prime_UTR | 30.0% | |
| TAGGTTTCAAAATTCGGTTT+AGG | - | chr7_3:81344437-81344456 | Msa1129360:CDS | 30.0% | |
| AGGTTTCAAAATTCGGTTTA+GGG | - | chr7_3:81344438-81344457 | Msa1129360:CDS | 30.0% | |
| ACTGAATGCATGCTTAATTA+CGG | + | chr7_3:81344519-81344538 | None:intergenic | 30.0% | |
| ATTAAGCATGCATTCAGTAA+AGG | - | chr7_3:81344521-81344540 | Msa1129360:intron | 30.0% | |
| !!! | GAATGAAATTTTGGTTGGAA+AGG | - | chr7_3:81344589-81344608 | Msa1129360:intron | 30.0% |
| TGAGAGTCCCAAATTATAAA+TGG | - | chr7_3:81345137-81345156 | Msa1129360:intron | 30.0% | |
| GAGAGTCCCAAATTATAAAT+GGG | - | chr7_3:81345138-81345157 | Msa1129360:intron | 30.0% | |
| GAGTCTCCCATTTATAATTT+GGG | + | chr7_3:81345147-81345166 | None:intergenic | 30.0% | |
| GAGGGAAAAGTTAAGTATAT+TGG | - | chr7_3:81345304-81345323 | Msa1129360:CDS | 30.0% | |
| TCTATTTGTAAAGCTGTGAT+AGG | + | chr7_3:81345379-81345398 | None:intergenic | 30.0% | |
| ! | CTCATATTTCTGATACTGTT+AGG | + | chr7_3:81346277-81346296 | None:intergenic | 30.0% |
| TTCTCAATTGTTAGGATACA+TGG | + | chr7_3:81346340-81346359 | None:intergenic | 30.0% | |
| ! | ACAACGATAGAAGAAGTATA+TGG | + | chr7_3:81346367-81346386 | None:intergenic | 30.0% |
| ATTACAAGTTTACCCCTTAT+TGG | - | chr7_3:81346636-81346655 | Msa1129360:intron | 30.0% | |
| TGACTCATATTCACCAATAA+GGG | + | chr7_3:81346652-81346671 | None:intergenic | 30.0% | |
| ATGACTCATATTCACCAATA+AGG | + | chr7_3:81346653-81346672 | None:intergenic | 30.0% | |
| AACAACTAAGATTGAGAATC+TGG | - | chr7_3:81346863-81346882 | Msa1129360:CDS | 30.0% | |
| TAGTAGATACTACAATGGAA+TGG | - | chr7_3:81346974-81346993 | Msa1129360:intron | 30.0% | |
| ! | ACTGAAAGAGATTTTACTTC+AGG | + | chr7_3:81347054-81347073 | None:intergenic | 30.0% |
| GAAGTAAAATCTCTTTCAGT+TGG | - | chr7_3:81347054-81347073 | Msa1129360:intron | 30.0% | |
| TCATTCACATTCATCTAACA+TGG | + | chr7_3:81347249-81347268 | None:intergenic | 30.0% | |
| TTCAGTTTGTGTTTGTGTTG+CGG | + | chr7_3:81344280-81344299 | None:intergenic | 35.0% | |
| ! | AAAATTCGGTTTAGGGTGTA+TGG | - | chr7_3:81344445-81344464 | Msa1129360:CDS | 35.0% |
| ATCATTATAACCTCCACTGA+GGG | + | chr7_3:81344471-81344490 | None:intergenic | 35.0% | |
| TTTGACACTGCTGATGTTTA+TGG | - | chr7_3:81344554-81344573 | Msa1129360:intron | 35.0% | |
| TCCTTAACTGTATCCTCAAT+AGG | + | chr7_3:81345017-81345036 | None:intergenic | 35.0% | |
| GGAGTCTCCCATTTATAATT+TGG | + | chr7_3:81345148-81345167 | None:intergenic | 35.0% | |
| ! | AAAACCGGTTTATAGAGGTA+GGG | + | chr7_3:81345170-81345189 | None:intergenic | 35.0% |
| !! | CTCTATAAACCGGTTTTGTA+GGG | - | chr7_3:81345173-81345192 | Msa1129360:intron | 35.0% |
| ATAACTCAACCCTACAAAAC+CGG | + | chr7_3:81345185-81345204 | None:intergenic | 35.0% | |
| TCACAGCTTTACAAATAGAG+TGG | - | chr7_3:81345380-81345399 | Msa1129360:intron | 35.0% | |
| ! | TCATTGATTAGGAGTAACTC+AGG | - | chr7_3:81345536-81345555 | Msa1129360:intron | 35.0% |
| ! | CATTGATTAGGAGTAACTCA+GGG | - | chr7_3:81345537-81345556 | Msa1129360:intron | 35.0% |
| GTAACTCAGGGTTAAAGAAA+TGG | - | chr7_3:81345549-81345568 | Msa1129360:intron | 35.0% | |
| ATTGTACCATATAGTCCACT+TGG | - | chr7_3:81345668-81345687 | Msa1129360:CDS | 35.0% | |
| GCAAAAAAACCTTTACCAAG+TGG | + | chr7_3:81345686-81345705 | None:intergenic | 35.0% | |
| !!! | CTTGGTAAAGGTTTTTTTGC+TGG | - | chr7_3:81345686-81345705 | Msa1129360:CDS | 35.0% |
| !!! | AAAGGTTTTTTTGCTGGCAA+AGG | - | chr7_3:81345692-81345711 | Msa1129360:CDS | 35.0% |
| AAATGCTATACCATGAAGCT+CGG | + | chr7_3:81345734-81345753 | None:intergenic | 35.0% | |
| ! | TTTTGTAACTCACCAGGAAT+AGG | + | chr7_3:81346196-81346215 | None:intergenic | 35.0% |
| ! | TGCATATTTTGTAACTCACC+AGG | + | chr7_3:81346202-81346221 | None:intergenic | 35.0% |
| ATGGTGCATTCTCAATTGTT+AGG | + | chr7_3:81346348-81346367 | None:intergenic | 35.0% | |
| TACAACAATCACTCTGTTGT+CGG | + | chr7_3:81346550-81346569 | None:intergenic | 35.0% | |
| GACTCATATTCACCAATAAG+GGG | + | chr7_3:81346651-81346670 | None:intergenic | 35.0% | |
| ! | TATGGACTTCTTTTGTTCTC+AGG | - | chr7_3:81346840-81346859 | Msa1129360:CDS | 35.0% |
| ATGGAATGGATAGTTTATCC+TGG | - | chr7_3:81346988-81347007 | Msa1129360:intron | 35.0% | |
| AATGCACTCGATCAAGAATA+AGG | - | chr7_3:81347079-81347098 | Msa1129360:CDS | 35.0% | |
| AACAGCAGAACAAATGCAAA+CGG | + | chr7_3:81347179-81347198 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGCGGTCATTT+TGG | + | chr7_3:81344271-81344290 | None:intergenic | 40.0% |
| CTAATTCCTCATGTCACACT+TGG | - | chr7_3:81344300-81344319 | Msa1129360:three_prime_UTR | 40.0% | |
| TGATGATACCTGAAAGCCTT+GGG | + | chr7_3:81344328-81344347 | None:intergenic | 40.0% | |
| GATCATTATAACCTCCACTG+AGG | + | chr7_3:81344472-81344491 | None:intergenic | 40.0% | |
| GATCCTCTTCCTGAAGAAAT+TGG | - | chr7_3:81344488-81344507 | Msa1129360:CDS | 40.0% | |
| ATGCCAATTTCTTCAGGAAG+AGG | + | chr7_3:81344494-81344513 | None:intergenic | 40.0% | |
| ACGGAAATGCCAATTTCTTC+AGG | + | chr7_3:81344500-81344519 | None:intergenic | 40.0% | |
| ATGTTTATGGACTCGATGGT+GGG | - | chr7_3:81344567-81344586 | Msa1129360:intron | 40.0% | |
| !!! | CGATGGTGGGAATGAAATTT+TGG | - | chr7_3:81344580-81344599 | Msa1129360:intron | 40.0% |
| !! | GGTGGGAATGAAATTTTGGT+TGG | - | chr7_3:81344584-81344603 | Msa1129360:intron | 40.0% |
| ATCCAGGTGGCTACAAAATT+TGG | - | chr7_3:81344855-81344874 | Msa1129360:intron | 40.0% | |
| ! | TACCAAATTTTGTAGCCACC+TGG | + | chr7_3:81344860-81344879 | None:intergenic | 40.0% |
| ! | TTTGGTATATCCAGAAGTGC+CGG | - | chr7_3:81344873-81344892 | Msa1129360:intron | 40.0% |
| TATGGGAATCAAAGGTTCAC+CGG | - | chr7_3:81344899-81344918 | Msa1129360:intron | 40.0% | |
| GCCTATTGAGGATACAGTTA+AGG | - | chr7_3:81345013-81345032 | Msa1129360:intron | 40.0% | |
| ! | AAACCGGTTTATAGAGGTAG+GGG | + | chr7_3:81345169-81345188 | None:intergenic | 40.0% |
| ! | CAAAACCGGTTTATAGAGGT+AGG | + | chr7_3:81345171-81345190 | None:intergenic | 40.0% |
| ! | CCTACAAAACCGGTTTATAG+AGG | + | chr7_3:81345175-81345194 | None:intergenic | 40.0% |
| !! | CCTCTATAAACCGGTTTTGT+AGG | - | chr7_3:81345172-81345191 | Msa1129360:intron | 40.0% |
| GGTAGGTGAACTTAAGAAAC+TGG | - | chr7_3:81345276-81345295 | Msa1129360:CDS | 40.0% | |
| AGGTGAACTTAAGAAACTGG+TGG | - | chr7_3:81345279-81345298 | Msa1129360:CDS | 40.0% | |
| GTGCTCTCCTTATTGTATCA+GGG | + | chr7_3:81345345-81345364 | None:intergenic | 40.0% | |
| TGTGCTCTCCTTATTGTATC+AGG | + | chr7_3:81345346-81345365 | None:intergenic | 40.0% | |
| TACAAATAGAGTGGTCTCTC+TGG | - | chr7_3:81345389-81345408 | Msa1129360:intron | 40.0% | |
| CTTATCCTGTGAACTTAGAG+AGG | + | chr7_3:81345466-81345485 | None:intergenic | 40.0% | |
| GAAATGGAACTGATTGCTCT+TGG | - | chr7_3:81345565-81345584 | Msa1129360:intron | 40.0% | |
| TTTCGTTGATACAGAGAGCT+TGG | - | chr7_3:81345638-81345657 | Msa1129360:intron | 40.0% | |
| TGATACAGAGAGCTTGGTAT+TGG | - | chr7_3:81345644-81345663 | Msa1129360:intron | 40.0% | |
| !! | CCTTTACCAAGTGGACTATA+TGG | + | chr7_3:81345677-81345696 | None:intergenic | 40.0% |
| CCATATAGTCCACTTGGTAA+AGG | - | chr7_3:81345674-81345693 | Msa1129360:CDS | 40.0% | |
| TGAGAACTTGGTCAAGAACA+AGG | - | chr7_3:81346072-81346091 | Msa1129360:CDS | 40.0% | |
| GAAAGTCTTAGCAAGAAGCA+TGG | - | chr7_3:81346112-81346131 | Msa1129360:intron | 40.0% | |
| TGCTCAGTTAGCATTAGCAT+GGG | - | chr7_3:81346144-81346163 | Msa1129360:intron | 40.0% | |
| ! | TTAGGTGGAAAGCATATGCT+TGG | + | chr7_3:81346786-81346805 | None:intergenic | 40.0% |
| GAGAATCTGGATCAAAACCT+TGG | - | chr7_3:81346876-81346895 | Msa1129360:CDS | 40.0% | |
| AGCAGTGAAACTATCAGAAG+AGG | - | chr7_3:81346905-81346924 | Msa1129360:CDS | 40.0% | |
| AACTATCAGAAGAGGACATG+CGG | - | chr7_3:81346913-81346932 | Msa1129360:CDS | 40.0% | |
| GTTCCTGAAGATGATATAGC+AGG | - | chr7_3:81346951-81346970 | Msa1129360:intron | 40.0% | |
| CTACCTGCTATATCATCTTC+AGG | + | chr7_3:81346957-81346976 | None:intergenic | 40.0% | |
| GCAGGTAGTAGATACTACAA+TGG | - | chr7_3:81346969-81346988 | Msa1129360:intron | 40.0% | |
| CACACCTCCAAAAGTTTCAA+CGG | - | chr7_3:81347022-81347041 | Msa1129360:intron | 40.0% | |
| ! | GTTGAGACCGTTGAAACTTT+TGG | + | chr7_3:81347032-81347051 | None:intergenic | 40.0% |
| GTGATGATACCTGAAAGCCT+TGG | + | chr7_3:81344329-81344348 | None:intergenic | 45.0% | |
| GCTGATGTTTATGGACTCGA+TGG | - | chr7_3:81344563-81344582 | Msa1129360:intron | 45.0% | |
| GATGTTTATGGACTCGATGG+TGG | - | chr7_3:81344566-81344585 | Msa1129360:intron | 45.0% | |
| ATTTGAACCAGGACCTCTAG+GGG | + | chr7_3:81344646-81344665 | None:intergenic | 45.0% | |
| GATTTGAACCAGGACCTCTA+GGG | + | chr7_3:81344647-81344666 | None:intergenic | 45.0% | |
| TAGAGGTCCTGGTTCAAATC+CGG | - | chr7_3:81344647-81344666 | Msa1129360:intron | 45.0% | |
| CATTTGTCCGGATTTGAACC+AGG | + | chr7_3:81344657-81344676 | None:intergenic | 45.0% | |
| ACTTCCCAGAGAAAAGATCC+AGG | - | chr7_3:81344839-81344858 | Msa1129360:intron | 45.0% | |
| ACCTTTGATTCCCATACCAC+CGG | + | chr7_3:81344895-81344914 | None:intergenic | 45.0% | |
| CGATACAACTGTGCCTATTG+AGG | - | chr7_3:81345001-81345020 | Msa1129360:intron | 45.0% | |
| ACTCCCCTACCTCTATAAAC+CGG | - | chr7_3:81345163-81345182 | Msa1129360:intron | 45.0% | |
| ! | ACTTAAGAAACTGGTGGACG+AGG | - | chr7_3:81345285-81345304 | Msa1129360:CDS | 45.0% |
| ! | CTTAAGAAACTGGTGGACGA+GGG | - | chr7_3:81345286-81345305 | Msa1129360:CDS | 45.0% |
| AAGCCAGCCCTGATACAATA+AGG | - | chr7_3:81345335-81345354 | Msa1129360:intron | 45.0% | |
| TCTCCTTATTGTATCAGGGC+TGG | + | chr7_3:81345341-81345360 | None:intergenic | 45.0% | |
| GAGTTCCTCTCTAAGTTCAC+AGG | - | chr7_3:81345458-81345477 | Msa1129360:intron | 45.0% | |
| TCTTGACCAAGTTCTCAGCT+TGG | + | chr7_3:81346069-81346088 | None:intergenic | 45.0% | |
| CTGCTCAGTTAGCATTAGCA+TGG | - | chr7_3:81346143-81346162 | Msa1129360:intron | 45.0% | |
| TTAGCATGGGTACTCCAACA+AGG | - | chr7_3:81346157-81346176 | Msa1129360:intron | 45.0% | |
| AAGGATGTTGTGCCTATTCC+TGG | - | chr7_3:81346181-81346200 | Msa1129360:intron | 45.0% | |
| GAGTGTCATCTGATGTACTC+AGG | - | chr7_3:81346706-81346725 | Msa1129360:intron | 45.0% | |
| GTACTCAGGTTACTAGCCAA+AGG | - | chr7_3:81346720-81346739 | Msa1129360:intron | 45.0% | |
| GTTTCACTGCTAATGCACCA+AGG | + | chr7_3:81346896-81346915 | None:intergenic | 45.0% | |
| ACTATCAGAAGAGGACATGC+GGG | - | chr7_3:81346914-81346933 | Msa1129360:CDS | 45.0% | |
| AGGTGTGTTAGCAAACTTCC+AGG | + | chr7_3:81347009-81347028 | None:intergenic | 45.0% | |
| ! | GAGACCGTTGAAACTTTTGG+AGG | + | chr7_3:81347029-81347048 | None:intergenic | 45.0% |
| TATCCTCCTCTGTGTGTCAG+CGG | + | chr7_3:81344134-81344153 | None:intergenic | 50.0% | |
| GAGGAGGATATCACAAAGCG+AGG | - | chr7_3:81344144-81344163 | Msa1129360:three_prime_UTR | 50.0% | |
| TGGGTTCCAAGTGTGACATG+AGG | + | chr7_3:81344309-81344328 | None:intergenic | 50.0% | |
| CATGTCACACTTGGAACCCA+AGG | - | chr7_3:81344309-81344328 | Msa1129360:three_prime_UTR | 50.0% | |
| ACTTGGAACCCAAGGCTTTC+AGG | - | chr7_3:81344317-81344336 | Msa1129360:three_prime_UTR | 50.0% | |
| AGGTTAGGTAGTTCCCCTAG+AGG | - | chr7_3:81344630-81344649 | Msa1129360:intron | 50.0% | |
| GGATTTGAACCAGGACCTCT+AGG | + | chr7_3:81344648-81344667 | None:intergenic | 50.0% | |
| TCCCAGAGAAAAGATCCAGG+TGG | - | chr7_3:81344842-81344861 | Msa1129360:intron | 50.0% | |
| ! | GCCACCTGGATCTTTTCTCT+GGG | + | chr7_3:81344846-81344865 | None:intergenic | 50.0% |
| ! | AGCCACCTGGATCTTTTCTC+TGG | + | chr7_3:81344847-81344866 | None:intergenic | 50.0% |
| CAGCTTGAACGCACATACTC+CGG | + | chr7_3:81344921-81344940 | None:intergenic | 50.0% | |
| ACGAGATAGTTCCTCTCTGC+AGG | - | chr7_3:81345428-81345447 | Msa1129360:intron | 50.0% | |
| ACTCGAACTAACCTGCAGAG+AGG | + | chr7_3:81345442-81345461 | None:intergenic | 50.0% | |
| AAGTTCTCAGCTTGGAAGCG+GGG | + | chr7_3:81346061-81346080 | None:intergenic | 50.0% | |
| CAAGTTCTCAGCTTGGAAGC+GGG | + | chr7_3:81346062-81346081 | None:intergenic | 50.0% | |
| CCAAGTTCTCAGCTTGGAAG+CGG | + | chr7_3:81346063-81346082 | None:intergenic | 50.0% | |
| ATGGGTACTCCAACAAGGCA+AGG | - | chr7_3:81346162-81346181 | Msa1129360:intron | 50.0% | |
| GCACAACATCCTTGCCTTGT+TGG | + | chr7_3:81346174-81346193 | None:intergenic | 50.0% | |
| ATCCTCCTCTGTGTGTCAGC+GGG | + | chr7_3:81344133-81344152 | None:intergenic | 55.0% | |
| GATACGATGCATGCGCATCG+CGG | + | chr7_3:81344180-81344199 | None:intergenic | 55.0% | |
| TTAGGGTGTATGGCCCTCAG+TGG | - | chr7_3:81344455-81344474 | Msa1129360:CDS | 55.0% | |
| !! | GGTATATCCAGAAGTGCCGG+TGG | - | chr7_3:81344876-81344895 | Msa1129360:intron | 55.0% |
| !! | ATCCAGAAGTGCCGGTGGTA+TGG | - | chr7_3:81344881-81344900 | Msa1129360:intron | 55.0% |
| !! | TCCAGAAGTGCCGGTGGTAT+GGG | - | chr7_3:81344882-81344901 | Msa1129360:intron | 55.0% |
| GCCGGTGGTATGGGAATCAA+AGG | - | chr7_3:81344891-81344910 | Msa1129360:intron | 55.0% | |
| TCTCTGGACTCGCGACATTG+AGG | - | chr7_3:81345405-81345424 | Msa1129360:intron | 55.0% | |
| CGAAGATGTGCCGAGCTTCA+TGG | - | chr7_3:81345721-81345740 | Msa1129360:CDS | 55.0% | |
| CCGCTTCCAAGCTGAGAACT+TGG | - | chr7_3:81346060-81346079 | Msa1129360:CDS | 55.0% | |
| CTGTGTGTCAGCGGGGGTTA+TGG | + | chr7_3:81344125-81344144 | None:intergenic | 60.0% | |
| TAACCCCCGCTGACACACAG+AGG | - | chr7_3:81344125-81344144 | Msa1129360:three_prime_UTR | 60.0% | |
| TCCTCCTCTGTGTGTCAGCG+GGG | + | chr7_3:81344132-81344151 | None:intergenic | 60.0% | |
| GGTAGTTCCCCTAGAGGTCC+TGG | - | chr7_3:81344636-81344655 | Msa1129360:intron | 60.0% | |
| TCCCATACCACCGGCACTTC+TGG | + | chr7_3:81344886-81344905 | None:intergenic | 60.0% | |
| CCTCCTCTGTGTGTCAGCGG+GGG | + | chr7_3:81344131-81344150 | None:intergenic | 65.0% | |
| GGGTGTATGGCCCTCAGTGG+AGG | - | chr7_3:81344458-81344477 | Msa1129360:CDS | 65.0% | |
| CCCCCGCTGACACACAGAGG+AGG | - | chr7_3:81344128-81344147 | Msa1129360:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 81344117 | 81347280 | 81344117 | ID=Msa1129360;Name=Msa1129360 |
| chr7_3 | mRNA | 81344117 | 81347280 | 81344117 | ID=Msa1129360-mRNA-1;Parent=Msa1129360;Name=Msa1129360-mRNA-1;_AED=0.37;_eAED=0.37;_QI=132|0.85|0.87|1|0.85|0.75|8|225|359 |
| chr7_3 | exon | 81344117 | 81344535 | 81344117 | ID=Msa1129360-mRNA-1:exon:23638;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81345195 | 81345348 | 81345195 | ID=Msa1129360-mRNA-1:exon:23637;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81345655 | 81345745 | 81345655 | ID=Msa1129360-mRNA-1:exon:23636;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81345948 | 81346120 | 81345948 | ID=Msa1129360-mRNA-1:exon:23635;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81346339 | 81346569 | 81346339 | ID=Msa1129360-mRNA-1:exon:23634;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81346787 | 81346957 | 81346787 | ID=Msa1129360-mRNA-1:exon:23633;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81347059 | 81347203 | 81347059 | ID=Msa1129360-mRNA-1:exon:23632;Parent=Msa1129360-mRNA-1 |
| chr7_3 | exon | 81347228 | 81347280 | 81347228 | ID=Msa1129360-mRNA-1:exon:23631;Parent=Msa1129360-mRNA-1 |
| chr7_3 | five_prime_UTR | 81347228 | 81347280 | 81347228 | ID=Msa1129360-mRNA-1:five_prime_utr;Parent=Msa1129360-mRNA-1 |
| chr7_3 | five_prime_UTR | 81347125 | 81347203 | 81347125 | ID=Msa1129360-mRNA-1:five_prime_utr;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81347059 | 81347124 | 81347059 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81346787 | 81346957 | 81346787 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81346339 | 81346569 | 81346339 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81345948 | 81346120 | 81345948 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81345655 | 81345745 | 81345655 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81345195 | 81345348 | 81345195 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | CDS | 81344342 | 81344535 | 81344342 | ID=Msa1129360-mRNA-1:cds;Parent=Msa1129360-mRNA-1 |
| chr7_3 | three_prime_UTR | 81344117 | 81344341 | 81344117 | ID=Msa1129360-mRNA-1:three_prime_utr;Parent=Msa1129360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
