Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187510 | KYP71782.1 | 71.717 | 198 | 40 | 2 | 22 | 218 | 56 | 238 | 2.77e-92 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187510 | sp|C6TBN2|AKR1_SOYBN | 76.577 | 111 | 26 | 0 | 109 | 219 | 236 | 346 | 2.12e-54 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187510 | A0A151TXK8 | 71.717 | 198 | 40 | 2 | 22 | 218 | 56 | 238 | 1.32e-92 | 280 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0187510 | Msa0481660 | 0.802240 | 6.162668e-49 | -8.615850e-47 |
| Msa0187510 | Msa0953230 | 0.811377 | 7.218775e-51 | -8.615850e-47 |
| Msa0187510 | Msa1129360 | 0.826062 | 3.332684e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187510 | MtrunA17_Chr7g0274071 | 98.230 | 113 | 2 | 0 | 107 | 219 | 239 | 351 | 6.21e-76 | 233 |
| Msa0187510 | MtrunA17_Chr7g0274071 | 94.203 | 69 | 4 | 0 | 22 | 90 | 81 | 149 | 2.43e-39 | 138 |
| Msa0187510 | MtrunA17_Chr7g0274061 | 89.623 | 106 | 11 | 0 | 109 | 214 | 245 | 350 | 1.80e-63 | 201 |
| Msa0187510 | MtrunA17_Chr7g0274061 | 47.826 | 138 | 57 | 3 | 22 | 154 | 79 | 206 | 1.19e-29 | 112 |
| Msa0187510 | MtrunA17_Chr7g0274081 | 76.852 | 108 | 23 | 1 | 109 | 214 | 91 | 198 | 2.00e-54 | 172 |
| Msa0187510 | MtrunA17_Chr1g0204651 | 38.806 | 268 | 88 | 7 | 22 | 213 | 73 | 340 | 6.22e-53 | 173 |
| Msa0187510 | MtrunA17_Chr7g0221791 | 36.429 | 280 | 90 | 10 | 12 | 212 | 62 | 332 | 1.83e-40 | 141 |
| Msa0187510 | MtrunA17_Chr7g0222171 | 35.955 | 267 | 90 | 9 | 22 | 212 | 71 | 332 | 1.98e-37 | 133 |
| Msa0187510 | MtrunA17_Chr7g0221771 | 51.887 | 106 | 47 | 2 | 107 | 212 | 5 | 106 | 1.98e-35 | 121 |
| Msa0187510 | MtrunA17_Chr7g0274041 | 54.717 | 106 | 47 | 1 | 109 | 213 | 237 | 342 | 8.66e-35 | 126 |
| Msa0187510 | MtrunA17_Chr7g0274041 | 42.222 | 135 | 66 | 3 | 22 | 154 | 74 | 198 | 2.94e-27 | 106 |
| Msa0187510 | MtrunA17_Chr7g0222121 | 52.830 | 106 | 46 | 2 | 107 | 212 | 265 | 366 | 2.21e-31 | 117 |
| Msa0187510 | MtrunA17_Chr7g0222121 | 57.971 | 69 | 28 | 1 | 22 | 90 | 71 | 138 | 1.51e-19 | 85.9 |
| Msa0187510 | MtrunA17_Chr7g0222151 | 59.722 | 72 | 29 | 0 | 107 | 178 | 5 | 76 | 4.09e-27 | 99.0 |
| Msa0187510 | MtrunA17_Chr7g0221781 | 56.140 | 57 | 25 | 0 | 26 | 82 | 74 | 130 | 7.85e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187510 | AT1G60750.1 | 41.434 | 251 | 85 | 6 | 22 | 212 | 75 | 323 | 4.33e-53 | 174 |
| Msa0187510 | AT1G60690.1 | 36.330 | 267 | 92 | 7 | 22 | 212 | 74 | 338 | 2.90e-41 | 143 |
| Msa0187510 | AT1G60730.1 | 34.457 | 267 | 97 | 7 | 22 | 212 | 74 | 338 | 1.91e-36 | 131 |
| Msa0187510 | AT1G60710.1 | 52.632 | 114 | 49 | 2 | 102 | 212 | 227 | 338 | 1.74e-31 | 118 |
| Msa0187510 | AT1G60710.1 | 65.217 | 69 | 24 | 0 | 22 | 90 | 74 | 142 | 3.03e-23 | 95.9 |
| Msa0187510 | AT1G60680.1 | 49.057 | 106 | 52 | 1 | 107 | 212 | 236 | 339 | 2.03e-30 | 115 |
| Msa0187510 | AT1G60680.1 | 58.571 | 70 | 28 | 1 | 22 | 90 | 74 | 143 | 1.21e-19 | 86.3 |
| Msa0187510 | AT1G10810.3 | 49.107 | 112 | 55 | 1 | 107 | 218 | 183 | 292 | 1.69e-29 | 111 |
| Msa0187510 | AT1G10810.3 | 52.874 | 87 | 32 | 1 | 13 | 90 | 4 | 90 | 7.36e-22 | 91.3 |
| Msa0187510 | AT1G60730.3 | 50.000 | 106 | 51 | 1 | 107 | 212 | 255 | 358 | 3.52e-29 | 112 |
| Msa0187510 | AT1G60730.3 | 58.571 | 70 | 29 | 0 | 22 | 91 | 74 | 143 | 2.46e-20 | 88.2 |
| Msa0187510 | AT1G10810.1 | 49.107 | 112 | 55 | 1 | 107 | 218 | 235 | 344 | 3.93e-29 | 111 |
| Msa0187510 | AT1G10810.1 | 60.870 | 69 | 27 | 0 | 22 | 90 | 74 | 142 | 2.63e-21 | 90.5 |
| Msa0187510 | AT1G60730.2 | 52.222 | 90 | 37 | 1 | 22 | 111 | 74 | 157 | 1.89e-22 | 90.5 |
| Msa0187510 | AT1G10810.2 | 60.870 | 69 | 27 | 0 | 22 | 90 | 74 | 142 | 8.71e-22 | 90.5 |
| Msa0187510 | AT1G60680.2 | 58.571 | 70 | 28 | 1 | 22 | 90 | 74 | 143 | 4.05e-20 | 85.9 |
Find 58 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATCCCTTATTATTTA+TGG | 0.046291 | 2_1:-2279225 | None:intergenic |
| ATCCAGGTGGCTACAAAATT+TGG | 0.216306 | 2_1:+2276878 | Msa0187510:CDS |
| TCCCATACCACCGGCACTTC+TGG | 0.235548 | 2_1:-2276906 | None:intergenic |
| GTTGAGACCGTTGAAACTTT+TGG | 0.258801 | 2_1:-2279049 | None:intergenic |
| ACTTGGAACCCAAGGCTTTC+AGG | 0.279174 | 2_1:+2276311 | Msa0187510:CDS |
| AACAACTAAGATTGAGAATC+TGG | 0.331104 | 2_1:+2278883 | Msa0187510:CDS |
| CGAAGATGTGCCGAGCTTCA+TGG | 0.363687 | 2_1:+2277742 | Msa0187510:CDS |
| AATGCACTCGATCAAGAATA+AGG | 0.378365 | 2_1:+2279099 | Msa0187510:three_prime_UTR |
| CCGCTTCCAAGCTGAGAACT+TGG | 0.380603 | 2_1:+2278080 | Msa0187510:CDS |
| TTTCATTCCATAAATAATAA+GGG | 0.382154 | 2_1:+2279218 | Msa0187510:three_prime_UTR |
| AAGGATGTTGTGCCTATTCC+TGG | 0.394764 | 2_1:+2278201 | Msa0187510:CDS |
| ATCCAGAAGTGCCGGTGGTA+TGG | 0.406125 | 2_1:+2276904 | Msa0187510:CDS |
| CTACCTGCTATATCATCTTC+AGG | 0.426229 | 2_1:-2278974 | None:intergenic |
| GCACAACATCCTTGCCTTGT+TGG | 0.434088 | 2_1:-2278191 | None:intergenic |
| GATTTGAATCAAATTCTCAT+AGG | 0.443062 | 2_1:+2279240 | Msa0187510:three_prime_UTR |
| GAAGTAAAATCTCTTTCAGT+TGG | 0.444389 | 2_1:+2279074 | Msa0187510:exon |
| TCCTTAACTGTATCCTCAAT+AGG | 0.446629 | 2_1:-2277037 | None:intergenic |
| AGGTGTGTTAGCAAACTTCC+AGG | 0.458381 | 2_1:-2279026 | None:intergenic |
| TCCAGAAGTGCCGGTGGTAT+GGG | 0.494504 | 2_1:+2276905 | Msa0187510:CDS |
| TTAGATGAATGTGAATGAAA+TGG | 0.500630 | 2_1:+2279271 | Msa0187510:three_prime_UTR |
| CTAATTCCTCATGTCACACT+TGG | 0.500882 | 2_1:+2276294 | Msa0187510:CDS |
| AGAACAAGGTTATATATGAT+AGG | 0.508380 | 2_1:+2278106 | Msa0187510:CDS |
| CGATACAACTGTGCCTATTG+AGG | 0.516697 | 2_1:+2277024 | Msa0187510:CDS |
| CCAAGTTCTCAGCTTGGAAG+CGG | 0.517525 | 2_1:-2278080 | None:intergenic |
| TCTTGACCAAGTTCTCAGCT+TGG | 0.528939 | 2_1:-2278086 | None:intergenic |
| TTCAGTTTGTGTTTGTGTTG+CGG | 0.534288 | 2_1:-2276271 | None:intergenic |
| ACCTTTGATTCCCATACCAC+CGG | 0.535653 | 2_1:-2276915 | None:intergenic |
| TCATTCACATTCATCTAACA+TGG | 0.540927 | 2_1:-2279266 | None:intergenic |
| ATGGAATGGATAGTTTATCC+TGG | 0.545904 | 2_1:+2279008 | Msa0187510:CDS |
| CTGCTCAGTTAGCATTAGCA+TGG | 0.546251 | 2_1:+2278163 | Msa0187510:CDS |
| AACAGCAGAACAAATGCAAA+CGG | 0.549192 | 2_1:-2279196 | None:intergenic |
| CAAGTTCTCAGCTTGGAAGC+GGG | 0.553670 | 2_1:-2278079 | None:intergenic |
| TGATGATACCTGAAAGCCTT+GGG | 0.564484 | 2_1:-2276319 | None:intergenic |
| GCCGGTGGTATGGGAATCAA+AGG | 0.566837 | 2_1:+2276914 | Msa0187510:CDS |
| CACACCTCCAAAAGTTTCAA+CGG | 0.566882 | 2_1:+2279042 | Msa0187510:CDS |
| CATGTCACACTTGGAACCCA+AGG | 0.578508 | 2_1:+2276303 | Msa0187510:CDS |
| GTTCCTGAAGATGATATAGC+AGG | 0.578538 | 2_1:+2278971 | Msa0187510:CDS |
| TATGGGAATCAAAGGTTCAC+CGG | 0.579317 | 2_1:+2276922 | Msa0187510:CDS |
| ACTATCAGAAGAGGACATGC+GGG | 0.584092 | 2_1:+2278934 | Msa0187510:CDS |
| CAGCTTGAACGCACATACTC+CGG | 0.589412 | 2_1:-2276941 | None:intergenic |
| GAGAATCTGGATCAAAACCT+TGG | 0.589578 | 2_1:+2278896 | Msa0187510:CDS |
| TTTGGTATATCCAGAAGTGC+CGG | 0.592216 | 2_1:+2276896 | Msa0187510:CDS |
| TGAGAACTTGGTCAAGAACA+AGG | 0.594858 | 2_1:+2278092 | Msa0187510:CDS |
| AGCAGTGAAACTATCAGAAG+AGG | 0.596544 | 2_1:+2278925 | Msa0187510:CDS |
| ACTTCCCAGAGAAAAGATCC+AGG | 0.597330 | 2_1:+2276862 | Msa0187510:CDS |
| TAGTAGATACTACAATGGAA+TGG | 0.602882 | 2_1:+2278994 | Msa0187510:CDS |
| ATGGGTACTCCAACAAGGCA+AGG | 0.611881 | 2_1:+2278182 | Msa0187510:CDS |
| AAATGCTATACCATGAAGCT+CGG | 0.620782 | 2_1:-2277752 | None:intergenic |
| GAAAGTCTTAGCAAGAAGCA+TGG | 0.623738 | 2_1:+2278132 | Msa0187510:CDS |
| AACTATCAGAAGAGGACATG+CGG | 0.624051 | 2_1:+2278933 | Msa0187510:CDS |
| TGCTCAGTTAGCATTAGCAT+GGG | 0.633628 | 2_1:+2278164 | Msa0187510:CDS |
| GTGATGATACCTGAAAGCCT+TGG | 0.646270 | 2_1:-2276320 | None:intergenic |
| GTTTCACTGCTAATGCACCA+AGG | 0.681712 | 2_1:-2278913 | None:intergenic |
| TGGGTTCCAAGTGTGACATG+AGG | 0.682273 | 2_1:-2276300 | None:intergenic |
| GCAGGTAGTAGATACTACAA+TGG | 0.684368 | 2_1:+2278989 | Msa0187510:CDS |
| TTAGCATGGGTACTCCAACA+AGG | 0.686154 | 2_1:+2278177 | Msa0187510:CDS |
| GGTATATCCAGAAGTGCCGG+TGG | 0.696646 | 2_1:+2276899 | Msa0187510:CDS |
| TCCCAGAGAAAAGATCCAGG+TGG | 0.757635 | 2_1:+2276865 | Msa0187510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGTTTTTATTATAGTT+AGG | - | chr2_1:2278485-2278504 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTGAAAATATTA+TGG | + | chr2_1:2278842-2278861 | Msa0187510:intron | 10.0% |
| !! | CCTAAAATAAAAACAATAAT+AGG | - | chr2_1:2276415-2276434 | None:intergenic | 15.0% |
| !!! | CCTATTATTGTTTTTATTTT+AGG | + | chr2_1:2276412-2276431 | Msa0187510:intron | 15.0% |
| !!! | TTATTTTAGGTTTCAAAATT+CGG | + | chr2_1:2276425-2276444 | Msa0187510:intron | 15.0% |
| !! | CATTTATCATTCAAAAAAAA+TGG | + | chr2_1:2276731-2276750 | Msa0187510:intron | 15.0% |
| !!! | ATATCTTTTATGTTCTAAAT+TGG | + | chr2_1:2276759-2276778 | Msa0187510:intron | 15.0% |
| !! | AAAGAGAAAAAATTTCAAAT+TGG | - | chr2_1:2276807-2276826 | None:intergenic | 15.0% |
| !!! | ATAAACTTTTTAAAAAGGAA+AGG | - | chr2_1:2278019-2278038 | None:intergenic | 15.0% |
| !!! | ACAACATAAACTTTTTAAAA+AGG | - | chr2_1:2278024-2278043 | None:intergenic | 15.0% |
| !! | ATTATTGTAAAAATCTTTGA+TGG | + | chr2_1:2278260-2278279 | Msa0187510:intron | 15.0% |
| !! | AAAAAGCTGAAAATAAAATT+AGG | - | chr2_1:2278824-2278843 | None:intergenic | 15.0% |
| !!! | TTTTCATTCCATAAATAATA+AGG | + | chr2_1:2279217-2279236 | Msa0187510:three_prime_UTR | 15.0% |
| !! | TTTCATTCCATAAATAATAA+GGG | + | chr2_1:2279218-2279237 | Msa0187510:three_prime_UTR | 15.0% |
| !! | AAAAATTAAAACAAGCAAAT+TGG | + | chr2_1:2279348-2279367 | Msa0187510:three_prime_UTR | 15.0% |
| !! | TATAGAGAGAAGAATATAAA+TGG | - | chr2_1:2276373-2276392 | None:intergenic | 20.0% |
| !! | TTAATATTTACTCATTTGTC+CGG | - | chr2_1:2276692-2276711 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTAAATTGGATA+CGG | + | chr2_1:2276765-2276784 | Msa0187510:intron | 20.0% |
| !!! | ATTCAAGTTTGAAGATTATT+TGG | + | chr2_1:2277232-2277251 | Msa0187510:intron | 20.0% |
| !! | TAACAAGTTTATTGTGTTAT+AGG | + | chr2_1:2277277-2277296 | Msa0187510:intron | 20.0% |
| !! | CTTGATCATGAATTAAATAT+TGG | + | chr2_1:2277861-2277880 | Msa0187510:intron | 20.0% |
| !!! | TTAAACTTGAGTAATTTTAC+AGG | + | chr2_1:2277928-2277947 | Msa0187510:intron | 20.0% |
| !!! | TAAACTTGAGTAATTTTACA+GGG | + | chr2_1:2277929-2277948 | Msa0187510:intron | 20.0% |
| !!! | TCTAACAAAAGTGTATTTTT+TGG | - | chr2_1:2278454-2278473 | None:intergenic | 20.0% |
| !! | TAACAATTTATCACATAGTT+TGG | + | chr2_1:2278526-2278545 | Msa0187510:intron | 20.0% |
| !! | TAAAAATTTAGAAGAACCTT+TGG | - | chr2_1:2278759-2278778 | None:intergenic | 20.0% |
| !! | TTCAAATCCCTTATTATTTA+TGG | - | chr2_1:2279228-2279247 | None:intergenic | 20.0% |
| ! | GGTATATACATACTAATCAT+AGG | + | chr2_1:2276634-2276653 | Msa0187510:intron | 25.0% |
| ! | ATACATACTAATCATAGGTT+AGG | + | chr2_1:2276639-2276658 | Msa0187510:intron | 25.0% |
| !!! | ATTATTTGATTGTGTTGACT+AGG | + | chr2_1:2276829-2276848 | Msa0187510:intron | 25.0% |
| ! | CATGTTAATTCTTACTGATA+TGG | + | chr2_1:2277124-2277143 | Msa0187510:intron | 25.0% |
| ! | AAGTTTATTGTGTTATAGGT+AGG | + | chr2_1:2277281-2277300 | Msa0187510:intron | 25.0% |
| !! | TTGAACAACTTTCATTGATT+AGG | + | chr2_1:2277547-2277566 | Msa0187510:intron | 25.0% |
| ! | ATGTCTTAACAGTAATTCTA+TGG | - | chr2_1:2277813-2277832 | None:intergenic | 25.0% |
| ! | GATCAATGCTATTACATAAT+TGG | - | chr2_1:2277837-2277856 | None:intergenic | 25.0% |
| !! | AAACTTGAGTAATTTTACAG+GGG | + | chr2_1:2277930-2277949 | Msa0187510:intron | 25.0% |
| ! | CATGTGAGAAAAAACAAATA+AGG | - | chr2_1:2277963-2277982 | None:intergenic | 25.0% |
| ! | AGAACAAGGTTATATATGAT+AGG | + | chr2_1:2278106-2278125 | Msa0187510:CDS | 25.0% |
| ! | TGTTCAGATTCATAAATAAG+AGG | - | chr2_1:2278324-2278343 | None:intergenic | 25.0% |
| ! | TATCACATAGTTTGGTTAAT+TGG | + | chr2_1:2278534-2278553 | Msa0187510:intron | 25.0% |
| ! | ATGTAACGTTATAAATCGTA+CGG | + | chr2_1:2278628-2278647 | Msa0187510:intron | 25.0% |
| ! | CTCTTAATATATGAAATGCA+AGG | - | chr2_1:2278709-2278728 | None:intergenic | 25.0% |
| ! | AAGCTGAAAATAAAATTAGG+TGG | - | chr2_1:2278821-2278840 | None:intergenic | 25.0% |
| ! | GATTTGAATCAAATTCTCAT+AGG | + | chr2_1:2279240-2279259 | Msa0187510:three_prime_UTR | 25.0% |
| ! | TTAGATGAATGTGAATGAAA+TGG | + | chr2_1:2279271-2279290 | Msa0187510:three_prime_UTR | 25.0% |
| !!! | TGAATGAAATGGTTTTTTTG+AGG | + | chr2_1:2279282-2279301 | Msa0187510:three_prime_UTR | 25.0% |
| !!! | GGTGTTTTGTTTGAATAATT+TGG | + | chr2_1:2279369-2279388 | Msa0187510:three_prime_UTR | 25.0% |
| TTAGGTTTCAAAATTCGGTT+AGG | + | chr2_1:2276430-2276449 | Msa0187510:intron | 30.0% | |
| AAAGGAATCATTTCTGATGA+TGG | + | chr2_1:2276513-2276532 | Msa0187510:intron | 30.0% | |
| !!! | GGTGAATAATTTTGGTTGAA+AGG | + | chr2_1:2276613-2276632 | Msa0187510:intron | 30.0% |
| TGAGAGTCCCAAATTATAAA+TGG | + | chr2_1:2277160-2277179 | Msa0187510:intron | 30.0% | |
| GAGAGTCCCAAATTATAAAT+GGG | + | chr2_1:2277161-2277180 | Msa0187510:intron | 30.0% | |
| GAGTCTCCCATTTATAATTT+GGG | - | chr2_1:2277170-2277189 | None:intergenic | 30.0% | |
| GAGGGAAAAGTTAAGTATAT+TGG | + | chr2_1:2277326-2277345 | Msa0187510:intron | 30.0% | |
| TCTATTTGTAAAGCTGTGAT+AGG | - | chr2_1:2277401-2277420 | None:intergenic | 30.0% | |
| ! | CTCATATTTCTGATACTGTT+AGG | - | chr2_1:2278297-2278316 | None:intergenic | 30.0% |
| TTCTCAATTGTTAGGATACA+TGG | - | chr2_1:2278360-2278379 | None:intergenic | 30.0% | |
| ! | ACAACGATAGAAGAAGTATA+TGG | - | chr2_1:2278387-2278406 | None:intergenic | 30.0% |
| ATTACAAGTTTACCCCTTAT+TGG | + | chr2_1:2278656-2278675 | Msa0187510:intron | 30.0% | |
| TGACTCATATTCACCAATAA+GGG | - | chr2_1:2278672-2278691 | None:intergenic | 30.0% | |
| ATGACTCATATTCACCAATA+AGG | - | chr2_1:2278673-2278692 | None:intergenic | 30.0% | |
| AACAACTAAGATTGAGAATC+TGG | + | chr2_1:2278883-2278902 | Msa0187510:CDS | 30.0% | |
| TAGTAGATACTACAATGGAA+TGG | + | chr2_1:2278994-2279013 | Msa0187510:CDS | 30.0% | |
| ! | ACTGAAAGAGATTTTACTTC+AGG | - | chr2_1:2279074-2279093 | None:intergenic | 30.0% |
| GAAGTAAAATCTCTTTCAGT+TGG | + | chr2_1:2279074-2279093 | Msa0187510:exon | 30.0% | |
| TCATTCACATTCATCTAACA+TGG | - | chr2_1:2279269-2279288 | None:intergenic | 30.0% | |
| TTCAGTTTGTGTTTGTGTTG+CGG | - | chr2_1:2276274-2276293 | None:intergenic | 35.0% | |
| TCAAAATTCGGTTAGGTGTA+TGG | + | chr2_1:2276437-2276456 | Msa0187510:intron | 35.0% | |
| CATGCTAAACGAAATCCATT+AGG | - | chr2_1:2276485-2276504 | None:intergenic | 35.0% | |
| GTTTAGCATGCATTCAGTAA+AGG | + | chr2_1:2276495-2276514 | Msa0187510:intron | 35.0% | |
| TCCTTAACTGTATCCTCAAT+AGG | - | chr2_1:2277040-2277059 | None:intergenic | 35.0% | |
| GGAGTCTCCCATTTATAATT+TGG | - | chr2_1:2277171-2277190 | None:intergenic | 35.0% | |
| AAAACCGTTTATAGAGGTAG+GGG | - | chr2_1:2277192-2277211 | None:intergenic | 35.0% | |
| CAAAACCGTTTATAGAGGTA+GGG | - | chr2_1:2277193-2277212 | None:intergenic | 35.0% | |
| ACAAAACCGTTTATAGAGGT+AGG | - | chr2_1:2277194-2277213 | None:intergenic | 35.0% | |
| !! | ACCTCTATAAACGGTTTTGT+AGG | + | chr2_1:2277194-2277213 | Msa0187510:intron | 35.0% |
| !! | CCTCTATAAACGGTTTTGTA+GGG | + | chr2_1:2277195-2277214 | Msa0187510:intron | 35.0% |
| TCACAGCTTTACAAATAGAG+TGG | + | chr2_1:2277402-2277421 | Msa0187510:intron | 35.0% | |
| ! | TCATTGATTAGGAGTAACTC+AGG | + | chr2_1:2277558-2277577 | Msa0187510:intron | 35.0% |
| ! | CATTGATTAGGAGTAACTCA+GGG | + | chr2_1:2277559-2277578 | Msa0187510:intron | 35.0% |
| GTAACTCAGGGTTAAAGAAA+TGG | + | chr2_1:2277571-2277590 | Msa0187510:intron | 35.0% | |
| ATTGTACCATATAGTCCACT+TGG | + | chr2_1:2277690-2277709 | Msa0187510:intron | 35.0% | |
| AGCAAAAAACCTTTACCAAG+TGG | - | chr2_1:2277708-2277727 | None:intergenic | 35.0% | |
| !!! | ACTTGGTAAAGGTTTTTTGC+TGG | + | chr2_1:2277707-2277726 | Msa0187510:intron | 35.0% |
| !!! | TAAAGGTTTTTTGCTGGCAA+AGG | + | chr2_1:2277713-2277732 | Msa0187510:intron | 35.0% |
| AAATGCTATACCATGAAGCT+CGG | - | chr2_1:2277755-2277774 | None:intergenic | 35.0% | |
| ! | TTTTGTAACTCACCAGGAAT+AGG | - | chr2_1:2278216-2278235 | None:intergenic | 35.0% |
| ! | TGCATATTTTGTAACTCACC+AGG | - | chr2_1:2278222-2278241 | None:intergenic | 35.0% |
| ATGGTGCATTCTCAATTGTT+AGG | - | chr2_1:2278368-2278387 | None:intergenic | 35.0% | |
| TACAACAATCACTCTGTTGT+CGG | - | chr2_1:2278570-2278589 | None:intergenic | 35.0% | |
| GACTCATATTCACCAATAAG+GGG | - | chr2_1:2278671-2278690 | None:intergenic | 35.0% | |
| ! | TATGGACTTCTTTTGTTCTC+AGG | + | chr2_1:2278860-2278879 | Msa0187510:intron | 35.0% |
| ATGGAATGGATAGTTTATCC+TGG | + | chr2_1:2279008-2279027 | Msa0187510:CDS | 35.0% | |
| AATGCACTCGATCAAGAATA+AGG | + | chr2_1:2279099-2279118 | Msa0187510:three_prime_UTR | 35.0% | |
| AACAGCAGAACAAATGCAAA+CGG | - | chr2_1:2279199-2279218 | None:intergenic | 35.0% | |
| CTAATTCCTCATGTCACACT+TGG | + | chr2_1:2276294-2276313 | Msa0187510:CDS | 40.0% | |
| TGATGATACCTGAAAGCCTT+GGG | - | chr2_1:2276322-2276341 | None:intergenic | 40.0% | |
| TGGAGGTTATGTCTTCCTAA+TGG | + | chr2_1:2276467-2276486 | Msa0187510:intron | 40.0% | |
| !! | ATTTCTGATGATGGACTCAG+TGG | + | chr2_1:2276522-2276541 | Msa0187510:intron | 40.0% |
| ! | TGGGCTGTGGTGAATAATTT+TGG | + | chr2_1:2276605-2276624 | Msa0187510:intron | 40.0% |
| ATCCAGGTGGCTACAAAATT+TGG | + | chr2_1:2276878-2276897 | Msa0187510:CDS | 40.0% | |
| ! | TACCAAATTTTGTAGCCACC+TGG | - | chr2_1:2276883-2276902 | None:intergenic | 40.0% |
| ! | TTTGGTATATCCAGAAGTGC+CGG | + | chr2_1:2276896-2276915 | Msa0187510:CDS | 40.0% |
| TATGGGAATCAAAGGTTCAC+CGG | + | chr2_1:2276922-2276941 | Msa0187510:CDS | 40.0% | |
| GCCTATTGAGGATACAGTTA+AGG | + | chr2_1:2277036-2277055 | Msa0187510:intron | 40.0% | |
| CCCTACAAAACCGTTTATAG+AGG | - | chr2_1:2277198-2277217 | None:intergenic | 40.0% | |
| GGTAGGTGAACTTAAGAAAC+TGG | + | chr2_1:2277298-2277317 | Msa0187510:intron | 40.0% | |
| AGGTGAACTTAAGAAACTGG+TGG | + | chr2_1:2277301-2277320 | Msa0187510:intron | 40.0% | |
| GTGCTCTCCTTATTGTATCA+GGG | - | chr2_1:2277367-2277386 | None:intergenic | 40.0% | |
| TGTGCTCTCCTTATTGTATC+AGG | - | chr2_1:2277368-2277387 | None:intergenic | 40.0% | |
| TACAAATAGAGTGGTCTCTC+TGG | + | chr2_1:2277411-2277430 | Msa0187510:intron | 40.0% | |
| CTTATCCTGTGAACTTAGAG+AGG | - | chr2_1:2277488-2277507 | None:intergenic | 40.0% | |
| GAAATGGAACTGATTGCTCT+TGG | + | chr2_1:2277587-2277606 | Msa0187510:intron | 40.0% | |
| TTTCGTTGATACAGAGAGCT+TGG | + | chr2_1:2277660-2277679 | Msa0187510:intron | 40.0% | |
| TGATACAGAGAGCTTGGTAT+TGG | + | chr2_1:2277666-2277685 | Msa0187510:intron | 40.0% | |
| !! | CCTTTACCAAGTGGACTATA+TGG | - | chr2_1:2277699-2277718 | None:intergenic | 40.0% |
| CCATATAGTCCACTTGGTAA+AGG | + | chr2_1:2277696-2277715 | Msa0187510:intron | 40.0% | |
| TGAGAACTTGGTCAAGAACA+AGG | + | chr2_1:2278092-2278111 | Msa0187510:CDS | 40.0% | |
| GAAAGTCTTAGCAAGAAGCA+TGG | + | chr2_1:2278132-2278151 | Msa0187510:CDS | 40.0% | |
| TGCTCAGTTAGCATTAGCAT+GGG | + | chr2_1:2278164-2278183 | Msa0187510:CDS | 40.0% | |
| ! | TTAGGTGGAAAGCATATGCT+TGG | - | chr2_1:2278806-2278825 | None:intergenic | 40.0% |
| GAGAATCTGGATCAAAACCT+TGG | + | chr2_1:2278896-2278915 | Msa0187510:CDS | 40.0% | |
| AGCAGTGAAACTATCAGAAG+AGG | + | chr2_1:2278925-2278944 | Msa0187510:CDS | 40.0% | |
| AACTATCAGAAGAGGACATG+CGG | + | chr2_1:2278933-2278952 | Msa0187510:CDS | 40.0% | |
| GTTCCTGAAGATGATATAGC+AGG | + | chr2_1:2278971-2278990 | Msa0187510:CDS | 40.0% | |
| CTACCTGCTATATCATCTTC+AGG | - | chr2_1:2278977-2278996 | None:intergenic | 40.0% | |
| GCAGGTAGTAGATACTACAA+TGG | + | chr2_1:2278989-2279008 | Msa0187510:CDS | 40.0% | |
| CACACCTCCAAAAGTTTCAA+CGG | + | chr2_1:2279042-2279061 | Msa0187510:CDS | 40.0% | |
| ! | GTTGAGACCGTTGAAACTTT+TGG | - | chr2_1:2279052-2279071 | None:intergenic | 40.0% |
| GTGATGATACCTGAAAGCCT+TGG | - | chr2_1:2276323-2276342 | None:intergenic | 45.0% | |
| GAAGACATAACCTCCACTGA+GGG | - | chr2_1:2276463-2276482 | None:intergenic | 45.0% | |
| AGTGGAGGTTTAATGCCTCT+TGG | + | chr2_1:2276540-2276559 | Msa0187510:intron | 45.0% | |
| GGTTTAATGCCTCTTGGAGT+TGG | + | chr2_1:2276546-2276565 | Msa0187510:intron | 45.0% | |
| TCCTTCTAAGCATGCATTCG+AGG | + | chr2_1:2276571-2276590 | Msa0187510:intron | 45.0% | |
| ACCTCGAATGCATGCTTAGA+AGG | - | chr2_1:2276575-2276594 | None:intergenic | 45.0% | |
| TTCTAAGCATGCATTCGAGG+TGG | + | chr2_1:2276574-2276593 | Msa0187510:intron | 45.0% | |
| TAGGTTAGGTAGTTCCCTAG+AGG | + | chr2_1:2276653-2276672 | Msa0187510:intron | 45.0% | |
| GATTTGAACCAGGACCTCTA+GGG | - | chr2_1:2276670-2276689 | None:intergenic | 45.0% | |
| TAGAGGTCCTGGTTCAAATC+CGG | + | chr2_1:2276670-2276689 | Msa0187510:intron | 45.0% | |
| CATTTGTCCGGATTTGAACC+AGG | - | chr2_1:2276680-2276699 | None:intergenic | 45.0% | |
| ACTTCCCAGAGAAAAGATCC+AGG | + | chr2_1:2276862-2276881 | Msa0187510:CDS | 45.0% | |
| ACCTTTGATTCCCATACCAC+CGG | - | chr2_1:2276918-2276937 | None:intergenic | 45.0% | |
| CGATACAACTGTGCCTATTG+AGG | + | chr2_1:2277024-2277043 | Msa0187510:CDS | 45.0% | |
| GACTCCCCTACCTCTATAAA+CGG | + | chr2_1:2277185-2277204 | Msa0187510:intron | 45.0% | |
| ! | ACTTAAGAAACTGGTGGACG+AGG | + | chr2_1:2277307-2277326 | Msa0187510:intron | 45.0% |
| ! | CTTAAGAAACTGGTGGACGA+GGG | + | chr2_1:2277308-2277327 | Msa0187510:intron | 45.0% |
| AAGCCAGCCCTGATACAATA+AGG | + | chr2_1:2277357-2277376 | Msa0187510:intron | 45.0% | |
| TCTCCTTATTGTATCAGGGC+TGG | - | chr2_1:2277363-2277382 | None:intergenic | 45.0% | |
| GAGTTCCTCTCTAAGTTCAC+AGG | + | chr2_1:2277480-2277499 | Msa0187510:intron | 45.0% | |
| TCTTGACCAAGTTCTCAGCT+TGG | - | chr2_1:2278089-2278108 | None:intergenic | 45.0% | |
| CTGCTCAGTTAGCATTAGCA+TGG | + | chr2_1:2278163-2278182 | Msa0187510:CDS | 45.0% | |
| TTAGCATGGGTACTCCAACA+AGG | + | chr2_1:2278177-2278196 | Msa0187510:CDS | 45.0% | |
| AAGGATGTTGTGCCTATTCC+TGG | + | chr2_1:2278201-2278220 | Msa0187510:CDS | 45.0% | |
| GAGTGTCATCTGATGTACTC+AGG | + | chr2_1:2278726-2278745 | Msa0187510:intron | 45.0% | |
| GTACTCAGGTTACTAGCCAA+AGG | + | chr2_1:2278740-2278759 | Msa0187510:intron | 45.0% | |
| GTTTCACTGCTAATGCACCA+AGG | - | chr2_1:2278916-2278935 | None:intergenic | 45.0% | |
| ACTATCAGAAGAGGACATGC+GGG | + | chr2_1:2278934-2278953 | Msa0187510:CDS | 45.0% | |
| AGGTGTGTTAGCAAACTTCC+AGG | - | chr2_1:2279029-2279048 | None:intergenic | 45.0% | |
| ! | GAGACCGTTGAAACTTTTGG+AGG | - | chr2_1:2279049-2279068 | None:intergenic | 45.0% |
| TGGGTTCCAAGTGTGACATG+AGG | - | chr2_1:2276303-2276322 | None:intergenic | 50.0% | |
| CATGTCACACTTGGAACCCA+AGG | + | chr2_1:2276303-2276322 | Msa0187510:CDS | 50.0% | |
| ACTTGGAACCCAAGGCTTTC+AGG | + | chr2_1:2276311-2276330 | Msa0187510:CDS | 50.0% | |
| GGAAGACATAACCTCCACTG+AGG | - | chr2_1:2276464-2276483 | None:intergenic | 50.0% | |
| !! | TCTGATGATGGACTCAGTGG+AGG | + | chr2_1:2276525-2276544 | Msa0187510:intron | 50.0% |
| AGAAGGATGCCAACTCCAAG+AGG | - | chr2_1:2276558-2276577 | None:intergenic | 50.0% | |
| GGATTTGAACCAGGACCTCT+AGG | - | chr2_1:2276671-2276690 | None:intergenic | 50.0% | |
| TCCCAGAGAAAAGATCCAGG+TGG | + | chr2_1:2276865-2276884 | Msa0187510:CDS | 50.0% | |
| ! | GCCACCTGGATCTTTTCTCT+GGG | - | chr2_1:2276869-2276888 | None:intergenic | 50.0% |
| ! | AGCCACCTGGATCTTTTCTC+TGG | - | chr2_1:2276870-2276889 | None:intergenic | 50.0% |
| CAGCTTGAACGCACATACTC+CGG | - | chr2_1:2276944-2276963 | None:intergenic | 50.0% | |
| ACGAGATAGTTCCTCTCTGC+AGG | + | chr2_1:2277450-2277469 | Msa0187510:intron | 50.0% | |
| ACTCGAACTAACCTGCAGAG+AGG | - | chr2_1:2277464-2277483 | None:intergenic | 50.0% | |
| CAAGTTCTCAGCTTGGAAGC+GGG | - | chr2_1:2278082-2278101 | None:intergenic | 50.0% | |
| CCAAGTTCTCAGCTTGGAAG+CGG | - | chr2_1:2278083-2278102 | None:intergenic | 50.0% | |
| ATGGGTACTCCAACAAGGCA+AGG | + | chr2_1:2278182-2278201 | Msa0187510:CDS | 50.0% | |
| GCACAACATCCTTGCCTTGT+TGG | - | chr2_1:2278194-2278213 | None:intergenic | 50.0% | |
| GTTAGGTGTATGGCCCTCAG+TGG | + | chr2_1:2276447-2276466 | Msa0187510:intron | 55.0% | |
| AGCATGCATTCGAGGTGGCT+TGG | + | chr2_1:2276579-2276598 | Msa0187510:intron | 55.0% | |
| ! | ATTCGAGGTGGCTTGGCTGT+GGG | + | chr2_1:2276586-2276605 | Msa0187510:intron | 55.0% |
| AGGTAGTTCCCTAGAGGTCC+TGG | + | chr2_1:2276659-2276678 | Msa0187510:intron | 55.0% | |
| !! | GGTATATCCAGAAGTGCCGG+TGG | + | chr2_1:2276899-2276918 | Msa0187510:CDS | 55.0% |
| !! | ATCCAGAAGTGCCGGTGGTA+TGG | + | chr2_1:2276904-2276923 | Msa0187510:CDS | 55.0% |
| !! | TCCAGAAGTGCCGGTGGTAT+GGG | + | chr2_1:2276905-2276924 | Msa0187510:CDS | 55.0% |
| GCCGGTGGTATGGGAATCAA+AGG | + | chr2_1:2276914-2276933 | Msa0187510:CDS | 55.0% | |
| TCTCTGGACTCGCGACATTG+AGG | + | chr2_1:2277427-2277446 | Msa0187510:intron | 55.0% | |
| CGAAGATGTGCCGAGCTTCA+TGG | + | chr2_1:2277742-2277761 | Msa0187510:CDS | 55.0% | |
| CCGCTTCCAAGCTGAGAACT+TGG | + | chr2_1:2278080-2278099 | Msa0187510:CDS | 55.0% | |
| AGGTGTATGGCCCTCAGTGG+AGG | + | chr2_1:2276450-2276469 | Msa0187510:intron | 60.0% | |
| ! | CATTCGAGGTGGCTTGGCTG+TGG | + | chr2_1:2276585-2276604 | Msa0187510:intron | 60.0% |
| TCCCATACCACCGGCACTTC+TGG | - | chr2_1:2276909-2276928 | None:intergenic | 60.0% | |
| ! | GGTGGCTTGGCTGTGGGCTG+TGG | + | chr2_1:2276592-2276611 | Msa0187510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 2276267 | 2279404 | 2276267 | ID=Msa0187510;Name=Msa0187510 |
| chr2_1 | mRNA | 2276267 | 2279404 | 2276267 | ID=Msa0187510-mRNA-1;Parent=Msa0187510;Name=Msa0187510-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.4|1|1|1|5|329|219 |
| chr2_1 | exon | 2276267 | 2276332 | 2276267 | ID=Msa0187510-mRNA-1:exon:1095;Parent=Msa0187510-mRNA-1 |
| chr2_1 | exon | 2276851 | 2277051 | 2276851 | ID=Msa0187510-mRNA-1:exon:1096;Parent=Msa0187510-mRNA-1 |
| chr2_1 | exon | 2277718 | 2277763 | 2277718 | ID=Msa0187510-mRNA-1:exon:1097;Parent=Msa0187510-mRNA-1 |
| chr2_1 | exon | 2278070 | 2278222 | 2278070 | ID=Msa0187510-mRNA-1:exon:1098;Parent=Msa0187510-mRNA-1 |
| chr2_1 | exon | 2278882 | 2279404 | 2278882 | ID=Msa0187510-mRNA-1:exon:1099;Parent=Msa0187510-mRNA-1 |
| chr2_1 | CDS | 2276267 | 2276332 | 2276267 | ID=Msa0187510-mRNA-1:cds;Parent=Msa0187510-mRNA-1 |
| chr2_1 | CDS | 2276851 | 2277051 | 2276851 | ID=Msa0187510-mRNA-1:cds;Parent=Msa0187510-mRNA-1 |
| chr2_1 | CDS | 2277718 | 2277763 | 2277718 | ID=Msa0187510-mRNA-1:cds;Parent=Msa0187510-mRNA-1 |
| chr2_1 | CDS | 2278070 | 2278222 | 2278070 | ID=Msa0187510-mRNA-1:cds;Parent=Msa0187510-mRNA-1 |
| chr2_1 | CDS | 2278882 | 2279075 | 2278882 | ID=Msa0187510-mRNA-1:cds;Parent=Msa0187510-mRNA-1 |
| chr2_1 | three_prime_UTR | 2279076 | 2279404 | 2279076 | ID=Msa0187510-mRNA-1:three_prime_utr;Parent=Msa0187510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
