Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060820 | Msa0953510 | 0.817172 | 3.785811e-52 | -8.615850e-47 |
| Msa0953510 | Msa1088370 | 0.868088 | 8.466957e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCACACTAATGGGTATT+TGG | 0.226206 | 6_3:+50023438 | None:intergenic |
| TTACCCTTATTGAGATTTAA+TGG | 0.231680 | 6_3:-50023220 | Msa0953510:three_prime_UTR |
| ATTTCCATTAAATCTCAATA+AGG | 0.271160 | 6_3:+50023216 | None:intergenic |
| TGCCGATATGTTCACACTAA+TGG | 0.291732 | 6_3:+50023430 | None:intergenic |
| CCCGTGCAAAGGATGATAAA+AGG | 0.308424 | 6_3:-50024489 | Msa0953510:CDS |
| GCCGATATGTTCACACTAAT+GGG | 0.367955 | 6_3:+50023431 | None:intergenic |
| ATGGGTATTTGGAGATAAGT+TGG | 0.368682 | 6_3:+50023449 | None:intergenic |
| TTTCCATTAAATCTCAATAA+GGG | 0.392639 | 6_3:+50023217 | None:intergenic |
| ATAGAAGACTTACCCTTTGA+AGG | 0.403273 | 6_3:+50025611 | None:intergenic |
| GCAACAAACTACGAGTCAAT+AGG | 0.423092 | 6_3:+50023318 | None:intergenic |
| TTACCGCGGCGGCGGGGAGG+AGG | 0.423396 | 6_3:+50025794 | None:intergenic |
| TGGGTATTTGGAGATAAGTT+GGG | 0.434185 | 6_3:+50023450 | None:intergenic |
| TGGAGATAAGTTGGGAATGT+TGG | 0.435000 | 6_3:+50023458 | None:intergenic |
| AACGGCGTTACCGCGGCGGC+GGG | 0.441876 | 6_3:+50025787 | None:intergenic |
| CTACATATCACAGTTTGATT+CGG | 0.442125 | 6_3:-50025690 | Msa0953510:CDS |
| TCATAGCAGCTGTAGAGTTC+CGG | 0.450651 | 6_3:+50025642 | None:intergenic |
| ACCCATTAGTGTGAACATAT+CGG | 0.456689 | 6_3:-50023432 | Msa0953510:exon |
| AAACGGCGTTACCGCGGCGG+CGG | 0.468011 | 6_3:+50025786 | None:intergenic |
| GGGAGGAGGCAAACGCGACA+AGG | 0.495146 | 6_3:+50025808 | None:intergenic |
| GGTCTTCACACTTGAGTCTG+AGG | 0.508440 | 6_3:+50023479 | None:intergenic |
| CACTTGAGTCTGAGGGTAGT+AGG | 0.509422 | 6_3:+50023487 | None:intergenic |
| CCGTGCAAAGGATGATAAAA+GGG | 0.513723 | 6_3:-50024488 | Msa0953510:intron |
| TTCAGGCTCAAGTGTTGGCA+AGG | 0.516600 | 6_3:-50023513 | Msa0953510:intron |
| TATGACGTTCTCTCCTTCAA+AGG | 0.524505 | 6_3:-50025624 | Msa0953510:CDS |
| ATGATTTCAGGCTCAAGTGT+TGG | 0.533688 | 6_3:-50023518 | Msa0953510:intron |
| CAGCTGTAGAGTTCCGGTGC+GGG | 0.537468 | 6_3:+50025648 | None:intergenic |
| TTGCCTCCTCCCCGCCGCCG+CGG | 0.542790 | 6_3:-50025797 | Msa0953510:CDS |
| GCGTTACCGCGGCGGCGGGG+AGG | 0.543127 | 6_3:+50025791 | None:intergenic |
| ATGACGTTCTCTCCTTCAAA+GGG | 0.546471 | 6_3:-50025623 | Msa0953510:intron |
| ACGGCGTTACCGCGGCGGCG+GGG | 0.552899 | 6_3:+50025788 | None:intergenic |
| GTCTTCACACTTGAGTCTGA+GGG | 0.558845 | 6_3:+50023480 | None:intergenic |
| CTGTGATATGTAGAGAAAGA+AGG | 0.563099 | 6_3:+50025700 | None:intergenic |
| TCTTCAGCAGTCCCGTGCAA+AGG | 0.576484 | 6_3:-50024500 | Msa0953510:CDS |
| TGACGAGAGGTAGTACGAAA+CGG | 0.580413 | 6_3:+50025769 | None:intergenic |
| GCAGAGGCAACAATTAGCTA+AGG | 0.592238 | 6_3:+50024539 | None:intergenic |
| TCAATAAGGGTAACTACACA+TGG | 0.596332 | 6_3:+50023230 | None:intergenic |
| AAGAATCAACGGCAAAGCAG+AGG | 0.605346 | 6_3:+50024523 | None:intergenic |
| TTTCTACGGAATCCCCGCAC+CGG | 0.614918 | 6_3:-50025661 | Msa0953510:CDS |
| GAAGGAATTCAGCACAGACA+AGG | 0.619927 | 6_3:+50025718 | None:intergenic |
| GAAGATAAACAAATGACGAG+AGG | 0.651792 | 6_3:+50025756 | None:intergenic |
| ACTGCTGAAGAAAGAATCAA+CGG | 0.658887 | 6_3:+50024512 | None:intergenic |
| ATGATTATGTGACAATGTAG+TGG | 0.663349 | 6_3:-50023276 | Msa0953510:three_prime_UTR |
| AGTACGAAACGGCGTTACCG+CGG | 0.688699 | 6_3:+50025780 | None:intergenic |
| GCAGCTGTAGAGTTCCGGTG+CGG | 0.692840 | 6_3:+50025647 | None:intergenic |
| ACGAAACGGCGTTACCGCGG+CGG | 0.701010 | 6_3:+50025783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAATAAATAAATTG+GGG | + | chr6_3:50023463-50023482 | None:intergenic | 10.0% |
| !! | GTTAAACAAATAAATAAATT+GGG | + | chr6_3:50023464-50023483 | None:intergenic | 10.0% |
| !! | AGTTAAACAAATAAATAAAT+TGG | + | chr6_3:50023465-50023484 | None:intergenic | 10.0% |
| !! | TTATAACTTCAAATTAAAAT+TGG | + | chr6_3:50023628-50023647 | None:intergenic | 10.0% |
| !!! | TAAAATAGAATTTCAAGTAA+TGG | + | chr6_3:50024086-50024105 | None:intergenic | 15.0% |
| !!! | ATAAAGATATCATTTTTACT+TGG | - | chr6_3:50024165-50024184 | Msa0953510:intron | 15.0% |
| !!! | TTGTGAATATCATTTTTATT+AGG | - | chr6_3:50024199-50024218 | Msa0953510:intron | 15.0% |
| !! | AGTATTATGTTATATTACTT+AGG | - | chr6_3:50024267-50024286 | Msa0953510:intron | 15.0% |
| !!! | ATAAGAAAAAAAGTACTTTA+AGG | + | chr6_3:50024696-50024715 | None:intergenic | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | + | chr6_3:50025232-50025251 | None:intergenic | 15.0% |
| !! | AAAAATGTGAAGAAAAAAAA+AGG | + | chr6_3:50025258-50025277 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTCACATTTTT+AGG | - | chr6_3:50025258-50025277 | Msa0953510:intron | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | + | chr6_3:50025232-50025251 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTTTATGATTTC+AGG | - | chr6_3:50025481-50025500 | Msa0953510:intron | 15.0% |
| !! | AATAAATAAATTGGGGATTT+AGG | + | chr6_3:50023456-50023475 | None:intergenic | 20.0% |
| !!! | TAATTTTCAGATTAAGAAGA+AGG | + | chr6_3:50023501-50023520 | None:intergenic | 20.0% |
| !!! | CTGAAAATTACTTGTTTTTT+AGG | - | chr6_3:50023511-50023530 | Msa0953510:CDS | 20.0% |
| !!! | AAGTTTTTAATATGGTAACA+GGG | + | chr6_3:50023787-50023806 | None:intergenic | 20.0% |
| !!! | GCTTTAAGAAGTTTTTAATA+TGG | + | chr6_3:50023795-50023814 | None:intergenic | 20.0% |
| !!! | ATAACTTCATTTTAACAAGA+GGG | + | chr6_3:50023835-50023854 | None:intergenic | 20.0% |
| !!! | AATAACTTCATTTTAACAAG+AGG | + | chr6_3:50023836-50023855 | None:intergenic | 20.0% |
| !! | TTTAGTGATATAAAGCTTAA+TGG | - | chr6_3:50023946-50023965 | Msa0953510:intron | 20.0% |
| !! | TATATGCCTATATTAATAGT+TGG | - | chr6_3:50024713-50024732 | Msa0953510:intron | 20.0% |
| !! | ATATGCCTATATTAATAGTT+GGG | - | chr6_3:50024714-50024733 | Msa0953510:intron | 20.0% |
| !!! | TTTTTCCCAACTATTAATAT+AGG | + | chr6_3:50024722-50024741 | None:intergenic | 20.0% |
| !! | GAAGAGCAAAAAAAAAAAAA+AGG | + | chr6_3:50025190-50025209 | None:intergenic | 20.0% |
| !!! | TCTAAAACTTAACTTGAAAA+CGG | + | chr6_3:50025409-50025428 | None:intergenic | 20.0% |
| !!! | TTTTTGATCAAAAGAAATCT+TGG | - | chr6_3:50025443-50025462 | Msa0953510:intron | 20.0% |
| !! | TTTCCATTAAATCTCAATAA+GGG | + | chr6_3:50025797-50025816 | None:intergenic | 20.0% |
| !! | ATTTCCATTAAATCTCAATA+AGG | + | chr6_3:50025798-50025817 | None:intergenic | 20.0% |
| !!! | GAGTGATTTTTGGATTTATA+GGG | + | chr6_3:50023661-50023680 | None:intergenic | 25.0% |
| !!! | TGAGTGATTTTTGGATTTAT+AGG | + | chr6_3:50023662-50023681 | None:intergenic | 25.0% |
| !! | AGTTTTTAATATGGTAACAG+GGG | + | chr6_3:50023786-50023805 | None:intergenic | 25.0% |
| !! | GAAGTTTTTAATATGGTAAC+AGG | + | chr6_3:50023788-50023807 | None:intergenic | 25.0% |
| !!! | TAACTTCATTTTAACAAGAG+GGG | + | chr6_3:50023834-50023853 | None:intergenic | 25.0% |
| ! | TCTAGAAAACATGATATTAG+TGG | - | chr6_3:50023983-50024002 | Msa0953510:intron | 25.0% |
| !! | AAACATGATATTAGTGGTTT+TGG | - | chr6_3:50023989-50024008 | Msa0953510:intron | 25.0% |
| !! | AACATGATATTAGTGGTTTT+GGG | - | chr6_3:50023990-50024009 | Msa0953510:intron | 25.0% |
| ! | CACCATGTAAAAAAATAAGT+AGG | + | chr6_3:50024404-50024423 | None:intergenic | 25.0% |
| ! | ATAAGAAATTAACGTGATGT+TGG | + | chr6_3:50024610-50024629 | None:intergenic | 25.0% |
| ! | TTAGTAAGCAAAACTTGTAA+AGG | - | chr6_3:50024762-50024781 | Msa0953510:intron | 25.0% |
| ! | TAGTAAGCAAAACTTGTAAA+GGG | - | chr6_3:50024763-50024782 | Msa0953510:intron | 25.0% |
| ! | CTAGACAAAATAGCATATAA+GGG | + | chr6_3:50024791-50024810 | None:intergenic | 25.0% |
| ! | AAAGCCAAAACAAATTGATT+TGG | - | chr6_3:50024863-50024882 | Msa0953510:intron | 25.0% |
| !!! | CAAAACAAATTGATTTGGAA+GGG | - | chr6_3:50024868-50024887 | Msa0953510:intron | 25.0% |
| ! | ACCAAATATTAACATGAACT+TGG | + | chr6_3:50024941-50024960 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGTACTCTAT+AGG | - | chr6_3:50024948-50024967 | Msa0953510:intron | 25.0% |
| ! | CTTATTAGAGATAGAAAACT+AGG | + | chr6_3:50025105-50025124 | None:intergenic | 25.0% |
| !! | AGTTTTCTATCTCTAATAAG+AGG | - | chr6_3:50025105-50025124 | Msa0953510:intron | 25.0% |
| ! | TATAAACAAGATGAAACGTA+AGG | + | chr6_3:50025315-50025334 | None:intergenic | 25.0% |
| ! | AACACCATTGAAAATGATAT+TGG | - | chr6_3:50025339-50025358 | Msa0953510:intron | 25.0% |
| !! | TTGACCAATATCATTTTCAA+TGG | + | chr6_3:50025346-50025365 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTATTTCAACAC+CGG | - | chr6_3:50025368-50025387 | Msa0953510:intron | 25.0% |
| !! | CTAAAACTTAACTTGAAAAC+GGG | + | chr6_3:50025408-50025427 | None:intergenic | 25.0% |
| ! | TTACCCTTATTGAGATTTAA+TGG | - | chr6_3:50025791-50025810 | Msa0953510:CDS | 25.0% |
| CTACATATCACAGTTTGATT+CGG | - | chr6_3:50023321-50023340 | Msa0953510:three_prime_UTR | 30.0% | |
| !!! | TGATTCGGAAGTATTTTCTA+CGG | - | chr6_3:50023336-50023355 | Msa0953510:three_prime_UTR | 30.0% |
| TTTCAGATTAAGAAGAAGGA+TGG | + | chr6_3:50023497-50023516 | None:intergenic | 30.0% | |
| ! | TTTTTGGATTTATAGGGAAG+TGG | + | chr6_3:50023655-50023674 | None:intergenic | 30.0% |
| ATCCAAAAATCACTCATTGT+TGG | - | chr6_3:50023666-50023685 | Msa0953510:intron | 30.0% | |
| TCCAAAAATCACTCATTGTT+GGG | - | chr6_3:50023667-50023686 | Msa0953510:intron | 30.0% | |
| TTTGATTGAAGATGTGTTTG+GGG | + | chr6_3:50024324-50024343 | None:intergenic | 30.0% | |
| GTTTGATTGAAGATGTGTTT+GGG | + | chr6_3:50024325-50024344 | None:intergenic | 30.0% | |
| AGTTTGATTGAAGATGTGTT+TGG | + | chr6_3:50024326-50024345 | None:intergenic | 30.0% | |
| !!! | CGCCTACTTATTTTTTTACA+TGG | - | chr6_3:50024399-50024418 | Msa0953510:intron | 30.0% |
| GATAATATGCAAGTAATTGC+AGG | + | chr6_3:50024570-50024589 | None:intergenic | 30.0% | |
| CCTAGACAAAATAGCATATA+AGG | + | chr6_3:50024792-50024811 | None:intergenic | 30.0% | |
| !!! | CCTTATATGCTATTTTGTCT+AGG | - | chr6_3:50024789-50024808 | Msa0953510:intron | 30.0% |
| !!! | ATGCTATTTTGTCTAGGAAT+TGG | - | chr6_3:50024795-50024814 | Msa0953510:intron | 30.0% |
| TAATCCATTGTTGTGATACA+AGG | - | chr6_3:50024824-50024843 | Msa0953510:intron | 30.0% | |
| !!! | GTTTTGGCTTTTAGTCATTT+TGG | + | chr6_3:50024854-50024873 | None:intergenic | 30.0% |
| !! | CCTTCCAAATCAATTTGTTT+TGG | + | chr6_3:50024870-50024889 | None:intergenic | 30.0% |
| !! | CCAAAACAAATTGATTTGGA+AGG | - | chr6_3:50024867-50024886 | Msa0953510:intron | 30.0% |
| GCCAAGTTCATGTTAATATT+TGG | - | chr6_3:50024937-50024956 | Msa0953510:intron | 30.0% | |
| GTTGTGATTTATATGAAGAG+CGG | - | chr6_3:50025001-50025020 | Msa0953510:intron | 30.0% | |
| TTGCTCTTCTTCACATATTT+AGG | - | chr6_3:50025201-50025220 | Msa0953510:intron | 30.0% | |
| ATGATTATGTGACAATGTAG+TGG | - | chr6_3:50025735-50025754 | Msa0953510:CDS | 30.0% | |
| GAAGATAAACAAATGACGAG+AGG | + | chr6_3:50023258-50023277 | None:intergenic | 35.0% | |
| CTGTGATATGTAGAGAAAGA+AGG | + | chr6_3:50023314-50023333 | None:intergenic | 35.0% | |
| ATAGAAGACTTACCCTTTGA+AGG | + | chr6_3:50023403-50023422 | None:intergenic | 35.0% | |
| AAGAAGAAGGATGGATGTTA+CGG | + | chr6_3:50023488-50023507 | None:intergenic | 35.0% | |
| TCATTGTTGGGCATATATTG+AGG | - | chr6_3:50023679-50023698 | Msa0953510:intron | 35.0% | |
| !!! | GTTTTTTGTAGCTCCAACTA+TGG | - | chr6_3:50023753-50023772 | Msa0953510:intron | 35.0% |
| !! | TTTCAAGTAATGGACATGCA+TGG | + | chr6_3:50024076-50024095 | None:intergenic | 35.0% |
| ! | GTTTGAAGCGTTTATGGTTT+GGG | + | chr6_3:50024367-50024386 | None:intergenic | 35.0% |
| ACTGCTGAAGAAAGAATCAA+CGG | + | chr6_3:50024502-50024521 | None:intergenic | 35.0% | |
| TATGCCTTGTATCACAACAA+TGG | + | chr6_3:50024831-50024850 | None:intergenic | 35.0% | |
| !! | ACAAATTGATTTGGAAGGGA+AGG | - | chr6_3:50024872-50024891 | Msa0953510:intron | 35.0% |
| !! | TGGTACTCTATAGGTTGATT+AGG | - | chr6_3:50024957-50024976 | Msa0953510:intron | 35.0% |
| ! | AGGTTGATTAGGTACCTTAA+TGG | - | chr6_3:50024968-50024987 | Msa0953510:intron | 35.0% |
| TGATTAGGTACCTTAATGGT+TGG | - | chr6_3:50024972-50024991 | Msa0953510:intron | 35.0% | |
| CAACTCTTTACCAACCATTA+AGG | + | chr6_3:50024985-50025004 | None:intergenic | 35.0% | |
| ! | TATGAAGAGCGGATTTACTT+AGG | - | chr6_3:50025012-50025031 | Msa0953510:intron | 35.0% |
| !! | TCTCTCTAAGACACTATATG+GGG | + | chr6_3:50025044-50025063 | None:intergenic | 35.0% |
| !! | CTCTCTCTAAGACACTATAT+GGG | + | chr6_3:50025045-50025064 | None:intergenic | 35.0% |
| !! | ACTCTCTCTAAGACACTATA+TGG | + | chr6_3:50025046-50025065 | None:intergenic | 35.0% |
| TGGGTATTTGGAGATAAGTT+GGG | + | chr6_3:50025564-50025583 | None:intergenic | 35.0% | |
| ATGGGTATTTGGAGATAAGT+TGG | + | chr6_3:50025565-50025584 | None:intergenic | 35.0% | |
| ! | TGTTCACACTAATGGGTATT+TGG | + | chr6_3:50025576-50025595 | None:intergenic | 35.0% |
| ACCCATTAGTGTGAACATAT+CGG | - | chr6_3:50025579-50025598 | Msa0953510:intron | 35.0% | |
| TCAATAAGGGTAACTACACA+TGG | + | chr6_3:50025784-50025803 | None:intergenic | 35.0% | |
| TATGACGTTCTCTCCTTCAA+AGG | - | chr6_3:50023387-50023406 | Msa0953510:three_prime_UTR | 40.0% | |
| ATGACGTTCTCTCCTTCAAA+GGG | - | chr6_3:50023388-50023407 | Msa0953510:three_prime_UTR | 40.0% | |
| ! | GCCCAACAATGAGTGATTTT+TGG | + | chr6_3:50023671-50023690 | None:intergenic | 40.0% |
| ! | GGTTTGAAGCGTTTATGGTT+TGG | + | chr6_3:50024368-50024387 | None:intergenic | 40.0% |
| ! | CCTTTTATCATCCTTTGCAC+GGG | + | chr6_3:50024525-50024544 | None:intergenic | 40.0% |
| ! | CCCTTTTATCATCCTTTGCA+CGG | + | chr6_3:50024526-50024545 | None:intergenic | 40.0% |
| CCGTGCAAAGGATGATAAAA+GGG | - | chr6_3:50024523-50024542 | Msa0953510:CDS | 40.0% | |
| !! | ATTGATTTGGAAGGGAAGGT+TGG | - | chr6_3:50024876-50024895 | Msa0953510:intron | 40.0% |
| TGGTCTAATGTTGCTAAGAG+AGG | - | chr6_3:50024915-50024934 | Msa0953510:intron | 40.0% | |
| !! | CTCTCTAAGACACTATATGG+GGG | + | chr6_3:50025043-50025062 | None:intergenic | 40.0% |
| ATGATTTCAGGCTCAAGTGT+TGG | - | chr6_3:50025493-50025512 | Msa0953510:intron | 40.0% | |
| ! | TGGAGATAAGTTGGGAATGT+TGG | + | chr6_3:50025556-50025575 | None:intergenic | 40.0% |
| GCCGATATGTTCACACTAAT+GGG | + | chr6_3:50025583-50025602 | None:intergenic | 40.0% | |
| TGCCGATATGTTCACACTAA+TGG | + | chr6_3:50025584-50025603 | None:intergenic | 40.0% | |
| GCAACAAACTACGAGTCAAT+AGG | + | chr6_3:50025696-50025715 | None:intergenic | 40.0% | |
| TGACGAGAGGTAGTACGAAA+CGG | + | chr6_3:50023245-50023264 | None:intergenic | 45.0% | |
| GAAGGAATTCAGCACAGACA+AGG | + | chr6_3:50023296-50023315 | None:intergenic | 45.0% | |
| TCATAGCAGCTGTAGAGTTC+CGG | + | chr6_3:50023372-50023391 | None:intergenic | 45.0% | |
| ! | GAAGCGGTTTGAAGCGTTTA+TGG | + | chr6_3:50024373-50024392 | None:intergenic | 45.0% |
| GCAGAGGCAACAATTAGCTA+AGG | + | chr6_3:50024475-50024494 | None:intergenic | 45.0% | |
| AAGAATCAACGGCAAAGCAG+AGG | + | chr6_3:50024491-50024510 | None:intergenic | 45.0% | |
| CCCGTGCAAAGGATGATAAA+AGG | - | chr6_3:50024522-50024541 | Msa0953510:CDS | 45.0% | |
| ACGGGTCTCTTGTGAATAAC+CGG | + | chr6_3:50025390-50025409 | None:intergenic | 45.0% | |
| GTCTTCACACTTGAGTCTGA+GGG | + | chr6_3:50025534-50025553 | None:intergenic | 45.0% | |
| !!! | AACTATTTTTTTTTTTTTTT+TGG | - | chr6_3:50024022-50024041 | Msa0953510:intron | 5.0% |
| CAGGGGTTTCACACCATAGT+TGG | + | chr6_3:50023769-50023788 | None:intergenic | 50.0% | |
| GAGGGGCAACTTCATAGTGA+AGG | + | chr6_3:50023817-50023836 | None:intergenic | 50.0% | |
| TAAGTAGGCGCGACAAGAAG+CGG | + | chr6_3:50024389-50024408 | None:intergenic | 50.0% | |
| !! | TTTGGAAGGGAAGGTTGGTG+TGG | - | chr6_3:50024881-50024900 | Msa0953510:intron | 50.0% |
| TTGGTGTGGCAGACAAGGAT+TGG | - | chr6_3:50024895-50024914 | Msa0953510:intron | 50.0% | |
| !! | TTCAGGCTCAAGTGTTGGCA+AGG | - | chr6_3:50025498-50025517 | Msa0953510:intron | 50.0% |
| CACTTGAGTCTGAGGGTAGT+AGG | + | chr6_3:50025527-50025546 | None:intergenic | 50.0% | |
| GGTCTTCACACTTGAGTCTG+AGG | + | chr6_3:50025535-50025554 | None:intergenic | 50.0% | |
| AGTACGAAACGGCGTTACCG+CGG | + | chr6_3:50023234-50023253 | None:intergenic | 55.0% | |
| TTTCTACGGAATCCCCGCAC+CGG | - | chr6_3:50023350-50023369 | Msa0953510:three_prime_UTR | 55.0% | |
| TCTTCAGCAGTCCCGTGCAA+AGG | - | chr6_3:50024511-50024530 | Msa0953510:CDS | 55.0% | |
| !! | GAAGGTTGGTGTGGCAGACA+AGG | - | chr6_3:50024890-50024909 | Msa0953510:intron | 55.0% |
| AGCTGTAGAGTTCCGGTGCG+GGG | + | chr6_3:50023365-50023384 | None:intergenic | 60.0% | |
| CAGCTGTAGAGTTCCGGTGC+GGG | + | chr6_3:50023366-50023385 | None:intergenic | 60.0% | |
| GCAGCTGTAGAGTTCCGGTG+CGG | + | chr6_3:50023367-50023386 | None:intergenic | 60.0% | |
| ACGAAACGGCGTTACCGCGG+CGG | + | chr6_3:50023231-50023250 | None:intergenic | 65.0% | |
| AAACGGCGTTACCGCGGCGG+CGG | + | chr6_3:50023228-50023247 | None:intergenic | 70.0% | |
| AACGGCGTTACCGCGGCGGC+GGG | + | chr6_3:50023227-50023246 | None:intergenic | 75.0% | |
| ! | TTGCCTCCTCCCCGCCGCCG+CGG | - | chr6_3:50023214-50023233 | Msa0953510:three_prime_UTR | 80.0% |
| ! | TTACCGCGGCGGCGGGGAGG+AGG | + | chr6_3:50023220-50023239 | None:intergenic | 80.0% |
| ! | ACGGCGTTACCGCGGCGGCG+GGG | + | chr6_3:50023226-50023245 | None:intergenic | 80.0% |
| ! | GCGTTACCGCGGCGGCGGGG+AGG | + | chr6_3:50023223-50023242 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 50023205 | 50025828 | 50023205 | ID=Msa0953510;Name=Msa0953510 |
| chr6_3 | mRNA | 50023205 | 50025828 | 50023205 | ID=Msa0953510-mRNA-1;Parent=Msa0953510;Name=Msa0953510-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0.25|0.75|0.33|0.5|4|241|122 |
| chr6_3 | exon | 50023205 | 50023530 | 50023205 | ID=Msa0953510-mRNA-1:exon:10908;Parent=Msa0953510-mRNA-1 |
| chr6_3 | exon | 50024489 | 50024562 | 50024489 | ID=Msa0953510-mRNA-1:exon:10907;Parent=Msa0953510-mRNA-1 |
| chr6_3 | exon | 50025496 | 50025500 | 50025496 | ID=Msa0953510-mRNA-1:exon:10906;Parent=Msa0953510-mRNA-1 |
| chr6_3 | exon | 50025624 | 50025828 | 50025624 | ID=Msa0953510-mRNA-1:exon:10905;Parent=Msa0953510-mRNA-1 |
| chr6_3 | CDS | 50025624 | 50025828 | 50025624 | ID=Msa0953510-mRNA-1:cds;Parent=Msa0953510-mRNA-1 |
| chr6_3 | CDS | 50025496 | 50025500 | 50025496 | ID=Msa0953510-mRNA-1:cds;Parent=Msa0953510-mRNA-1 |
| chr6_3 | CDS | 50024489 | 50024562 | 50024489 | ID=Msa0953510-mRNA-1:cds;Parent=Msa0953510-mRNA-1 |
| chr6_3 | CDS | 50023446 | 50023530 | 50023446 | ID=Msa0953510-mRNA-1:cds;Parent=Msa0953510-mRNA-1 |
| chr6_3 | three_prime_UTR | 50023205 | 50023445 | 50023205 | ID=Msa0953510-mRNA-1:three_prime_utr;Parent=Msa0953510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
