Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060820 | Msa1088370 | 0.819379 | 1.197636e-52 | -8.615850e-47 |
| Msa0953510 | Msa1088370 | 0.868088 | 8.466957e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCCTTATTGAAATTTAA+TGG | 0.190477 | 7_3:+1498526 | Msa1088370:three_prime_UTR |
| TGTTCACACTAATGGGTATT+TGG | 0.226206 | 7_3:-1498308 | None:intergenic |
| ATTTCCATTAAATTTCAATA+AGG | 0.257974 | 7_3:-1498530 | None:intergenic |
| TGCCGATATGTTCACACTAA+TGG | 0.291732 | 7_3:-1498316 | None:intergenic |
| TTTCCATTAAATTTCAATAA+GGG | 0.335351 | 7_3:-1498529 | None:intergenic |
| GCCGATATGTTCACACTAAT+GGG | 0.367955 | 7_3:-1498315 | None:intergenic |
| ATGGGTATTTGGAGATAAGT+TGG | 0.368682 | 7_3:-1498297 | None:intergenic |
| ATAGAAGACTTACCCTTTGA+AGG | 0.403273 | 7_3:-1496133 | None:intergenic |
| GCAACAAACTACGAGTCAAT+AGG | 0.423092 | 7_3:-1498428 | None:intergenic |
| TGGGTATTTGGAGATAAGTT+GGG | 0.434185 | 7_3:-1498296 | None:intergenic |
| TGGAGATAAGTTGGGAATGT+TGG | 0.435000 | 7_3:-1498288 | None:intergenic |
| CTGCATATCACAGTTTGATT+CGG | 0.443848 | 7_3:+1496054 | Msa1088370:CDS |
| TCATAGCAGCTGTAGAGTTC+CGG | 0.450651 | 7_3:-1496102 | None:intergenic |
| ACCCATTAGTGTGAACATAT+CGG | 0.456689 | 7_3:+1498314 | Msa1088370:three_prime_UTR |
| TCTCCTGATGGAAGCTCAAA+AGG | 0.463859 | 7_3:-1495872 | None:intergenic |
| TTACCGCGGCGGAGGGGAGG+AGG | 0.471022 | 7_3:-1495950 | None:intergenic |
| CTACGATCTGGTGGCACGAT+GGG | 0.480285 | 7_3:-1495838 | None:intergenic |
| AAACGGCGTTACCGCGGCGG+AGG | 0.498409 | 7_3:-1495958 | None:intergenic |
| GGTCTTCACACTTGAGTCTG+AGG | 0.508440 | 7_3:-1498267 | None:intergenic |
| CACTTGAGTCTGAGGGTAGT+AGG | 0.509422 | 7_3:-1498259 | None:intergenic |
| TTCAGGCTCAAGTGTTGGCA+AGG | 0.516600 | 7_3:+1498233 | Msa1088370:intron |
| TATGACGTTCTCTCCTTCAA+AGG | 0.524505 | 7_3:+1496120 | Msa1088370:CDS |
| GTGCCACCAGATCGTAGAAA+AGG | 0.529698 | 7_3:+1495844 | Msa1088370:CDS |
| AACGGCGTTACCGCGGCGGA+GGG | 0.532355 | 7_3:-1495957 | None:intergenic |
| ATGATTTCAGGCTCAAGTGT+TGG | 0.533688 | 7_3:+1498228 | Msa1088370:intron |
| GCGTTACCGCGGCGGAGGGG+AGG | 0.537056 | 7_3:-1495953 | None:intergenic |
| ATGACGTTCTCTCCTTCAAA+GGG | 0.546471 | 7_3:+1496121 | Msa1088370:CDS |
| CTGTGATATGCAGAGAAAGA+AGG | 0.549667 | 7_3:-1496044 | None:intergenic |
| GGGAGGAGGTAAACGCGACA+AGG | 0.554895 | 7_3:-1495936 | None:intergenic |
| GTCTTCACACTTGAGTCTGA+GGG | 0.558845 | 7_3:-1498266 | None:intergenic |
| TCTACGATCTGGTGGCACGA+TGG | 0.564435 | 7_3:-1495839 | None:intergenic |
| CGATCTGGTGGCACGATGGG+CGG | 0.574978 | 7_3:-1495835 | None:intergenic |
| TGACGAGAGGTAGTACGAAA+CGG | 0.580413 | 7_3:-1495975 | None:intergenic |
| ACGGCGTTACCGCGGCGGAG+GGG | 0.598017 | 7_3:-1495956 | None:intergenic |
| GAAGGAATTCAGCACAGACA+AGG | 0.619927 | 7_3:-1496026 | None:intergenic |
| TCAATAAGGGTAACTACACA+TGG | 0.620909 | 7_3:-1498516 | None:intergenic |
| TCAATGGATAGATCTCCTGA+TGG | 0.621843 | 7_3:-1495884 | None:intergenic |
| GAAGATAAACAAATGACGAG+AGG | 0.651792 | 7_3:-1495988 | None:intergenic |
| TTTCTACGGAATCACCGCAC+CGG | 0.661533 | 7_3:+1496083 | Msa1088370:CDS |
| ATGATTATGTGACAATGTAG+TGG | 0.663349 | 7_3:+1498470 | Msa1088370:three_prime_UTR |
| TTACCTCCTCCCCTCCGCCG+CGG | 0.666970 | 7_3:+1495947 | Msa1088370:CDS |
| AGTACGAAACGGCGTTACCG+CGG | 0.688699 | 7_3:-1495964 | None:intergenic |
| ACGAAACGGCGTTACCGCGG+CGG | 0.703029 | 7_3:-1495961 | None:intergenic |
| GCAGCTGTAGAGTTCCGGTG+CGG | 0.764536 | 7_3:-1496097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAATAAATAAATTG+GGG | - | chr7_3:1496196-1496215 | None:intergenic | 10.0% |
| !! | GTTAAACAAATAAATAAATT+GGG | - | chr7_3:1496197-1496216 | None:intergenic | 10.0% |
| !! | AGTTAAACAAATAAATAAAT+TGG | - | chr7_3:1496198-1496217 | None:intergenic | 10.0% |
| !! | TTATAACTTCAAATTAAAAT+TGG | - | chr7_3:1496362-1496381 | None:intergenic | 10.0% |
| !!! | ATAACTTTATTTTAACAAGA+GGG | - | chr7_3:1496578-1496597 | None:intergenic | 15.0% |
| !!! | AATAACTTTATTTTAACAAG+AGG | - | chr7_3:1496579-1496598 | None:intergenic | 15.0% |
| !!! | GGTAACTTTTTTTTTTTTTT+TGG | + | chr7_3:1496762-1496781 | Msa1088370:intron | 15.0% |
| !!! | TAAAATAGAATTTCAAGTAA+TGG | - | chr7_3:1496826-1496845 | None:intergenic | 15.0% |
| !!! | TAATAAAGATATTGTTTTCT+TGG | + | chr7_3:1496903-1496922 | Msa1088370:intron | 15.0% |
| !! | AGTATTATGTTATATTACTT+AGG | + | chr7_3:1497005-1497024 | Msa1088370:intron | 15.0% |
| !!! | TTTTGATTCAATTAAAGTTT+TGG | - | chr7_3:1497039-1497058 | None:intergenic | 15.0% |
| !!! | ATAAGAAAAAAAGTACTTTA+AGG | - | chr7_3:1497434-1497453 | None:intergenic | 15.0% |
| !! | AGAAGAGAAAAAAAAAAAAA+AGG | - | chr7_3:1497927-1497946 | None:intergenic | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | - | chr7_3:1497968-1497987 | None:intergenic | 15.0% |
| !! | AAAAATGTGAAGAAAAAAAA+AGG | - | chr7_3:1497994-1498013 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTCACATTTTT+AGG | + | chr7_3:1497994-1498013 | Msa1088370:intron | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | - | chr7_3:1497968-1497987 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTTTATGATTTC+AGG | + | chr7_3:1498216-1498235 | Msa1088370:intron | 15.0% |
| !! | TTTCCATTAAATTTCAATAA+GGG | - | chr7_3:1498532-1498551 | None:intergenic | 15.0% |
| !! | ATTTCCATTAAATTTCAATA+AGG | - | chr7_3:1498533-1498552 | None:intergenic | 15.0% |
| !! | AATAAATAAATTGGGGATTT+AGG | - | chr7_3:1496189-1496208 | None:intergenic | 20.0% |
| !!! | TAATTTTCAGATTAAGAAGA+AGG | - | chr7_3:1496234-1496253 | None:intergenic | 20.0% |
| !!! | CTGAAAATTACTTGTTTTTT+AGG | + | chr7_3:1496244-1496263 | Msa1088370:intron | 20.0% |
| !!! | AAGTTTTTAATATGGTAACA+GGG | - | chr7_3:1496530-1496549 | None:intergenic | 20.0% |
| !!! | GCTTTAAGAAGTTTTTAATA+TGG | - | chr7_3:1496538-1496557 | None:intergenic | 20.0% |
| !!! | TAACTTTATTTTAACAAGAG+GGG | - | chr7_3:1496577-1496596 | None:intergenic | 20.0% |
| !! | TTTAGTGATATAAAGCTTAA+TGG | + | chr7_3:1496689-1496708 | Msa1088370:intron | 20.0% |
| !!! | TTGTGAATATCATTTTTCTT+AGG | + | chr7_3:1496937-1496956 | Msa1088370:intron | 20.0% |
| !! | TATATGCCTATATTAATAGT+TGG | + | chr7_3:1497451-1497470 | Msa1088370:intron | 20.0% |
| !! | ATATGCCTATATTAATAGTT+GGG | + | chr7_3:1497452-1497471 | Msa1088370:intron | 20.0% |
| !!! | TTTTTCCCAACTATTAATAT+AGG | - | chr7_3:1497460-1497479 | None:intergenic | 20.0% |
| !!! | TTTTTGATCAAAAGAAATCT+TGG | + | chr7_3:1498178-1498197 | Msa1088370:intron | 20.0% |
| !! | TTACCCTTATTGAAATTTAA+TGG | + | chr7_3:1498526-1498545 | Msa1088370:three_prime_UTR | 20.0% |
| !! | AGTTTTTAATATGGTAACAG+GGG | - | chr7_3:1496529-1496548 | None:intergenic | 25.0% |
| !! | GAAGTTTTTAATATGGTAAC+AGG | - | chr7_3:1496531-1496550 | None:intergenic | 25.0% |
| ! | TCTAGAAAACATGATATTAG+TGG | + | chr7_3:1496726-1496745 | Msa1088370:intron | 25.0% |
| !! | AAACATGATATTAGTGGTTT+TGG | + | chr7_3:1496732-1496751 | Msa1088370:intron | 25.0% |
| !! | AACATGATATTAGTGGTTTT+GGG | + | chr7_3:1496733-1496752 | Msa1088370:intron | 25.0% |
| ! | CACCATGTAAAAAAATAAGT+AGG | - | chr7_3:1497142-1497161 | None:intergenic | 25.0% |
| ! | ATAAGAAATTAACGTGATGT+TGG | - | chr7_3:1497348-1497367 | None:intergenic | 25.0% |
| ! | TTAGTAAGCAAAACTTGTAA+AGG | + | chr7_3:1497500-1497519 | Msa1088370:intron | 25.0% |
| ! | TAGTAAGCAAAACTTGTAAA+GGG | + | chr7_3:1497501-1497520 | Msa1088370:intron | 25.0% |
| ! | CTAGACAAAATAGCATATAA+GGG | - | chr7_3:1497529-1497548 | None:intergenic | 25.0% |
| ! | AAAGCCAAAACAAATTGATT+TGG | + | chr7_3:1497601-1497620 | Msa1088370:intron | 25.0% |
| !!! | CTTTCCAAATCAATTTGTTT+TGG | - | chr7_3:1497608-1497627 | None:intergenic | 25.0% |
| !!! | CAAAACAAATTGATTTGGAA+AGG | + | chr7_3:1497606-1497625 | Msa1088370:intron | 25.0% |
| ! | CCAAATATTAACATGAACTT+GGG | - | chr7_3:1497678-1497697 | None:intergenic | 25.0% |
| ! | ACCAAATATTAACATGAACT+TGG | - | chr7_3:1497679-1497698 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGTACTCTAT+AGG | + | chr7_3:1497686-1497705 | Msa1088370:intron | 25.0% |
| ! | CTTATTAGAGATAGATAACT+AGG | - | chr7_3:1497842-1497861 | None:intergenic | 25.0% |
| ! | AGTTATCTATCTCTAATAAG+AGG | + | chr7_3:1497842-1497861 | Msa1088370:intron | 25.0% |
| ! | TTTCTCTTCTTCACATATTT+AGG | + | chr7_3:1497937-1497956 | Msa1088370:intron | 25.0% |
| ! | TATAAACAAGATGAAACGTA+AGG | - | chr7_3:1498051-1498070 | None:intergenic | 25.0% |
| ! | AACACCATTGAAAATGATAT+TGG | + | chr7_3:1498075-1498094 | Msa1088370:intron | 25.0% |
| !! | TTGACCAATATCATTTTCAA+TGG | - | chr7_3:1498082-1498101 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTATTTCAACAC+CGG | + | chr7_3:1498104-1498123 | Msa1088370:intron | 25.0% |
| !! | CTAAAACTTAACTTGAAAAC+AGG | - | chr7_3:1498144-1498163 | None:intergenic | 25.0% |
| AGTCTTCTTGAAAAACTGAT+CGG | - | chr7_3:1495911-1495930 | None:intergenic | 30.0% | |
| !!! | TGATTCGGAAGTATTTTCTA+CGG | + | chr7_3:1496069-1496088 | Msa1088370:CDS | 30.0% |
| TTTCAGATTAAGAAGAAGGA+TGG | - | chr7_3:1496230-1496249 | None:intergenic | 30.0% | |
| !! | GAGTGATTTTTGGATCTATA+GGG | - | chr7_3:1496395-1496414 | None:intergenic | 30.0% |
| !! | TGAGTGATTTTTGGATCTAT+AGG | - | chr7_3:1496396-1496415 | None:intergenic | 30.0% |
| ATCCAAAAATCACTCATTGT+TGG | + | chr7_3:1496400-1496419 | Msa1088370:intron | 30.0% | |
| TCCAAAAATCACTCATTGTT+GGG | + | chr7_3:1496401-1496420 | Msa1088370:intron | 30.0% | |
| TGTTTAGATTCATGTGCTTT+AGG | + | chr7_3:1496444-1496463 | Msa1088370:intron | 30.0% | |
| TTTGATTGAAGATGTGTTTG+GGG | - | chr7_3:1497062-1497081 | None:intergenic | 30.0% | |
| GTTTGATTGAAGATGTGTTT+GGG | - | chr7_3:1497063-1497082 | None:intergenic | 30.0% | |
| AGTTTGATTGAAGATGTGTT+TGG | - | chr7_3:1497064-1497083 | None:intergenic | 30.0% | |
| !!! | CGCCTACTTATTTTTTTACA+TGG | + | chr7_3:1497137-1497156 | Msa1088370:intron | 30.0% |
| GATAATATGCAAGTAATTGC+AGG | - | chr7_3:1497308-1497327 | None:intergenic | 30.0% | |
| CCTAGACAAAATAGCATATA+AGG | - | chr7_3:1497530-1497549 | None:intergenic | 30.0% | |
| !!! | CCTTATATGCTATTTTGTCT+AGG | + | chr7_3:1497527-1497546 | Msa1088370:intron | 30.0% |
| !!! | ATGCTATTTTGTCTAGGAAT+TGG | + | chr7_3:1497533-1497552 | Msa1088370:intron | 30.0% |
| TAATCCATTGTTGTGATACA+AGG | + | chr7_3:1497562-1497581 | Msa1088370:intron | 30.0% | |
| !!! | GTTTTGGCTTTTAGTCATTT+TGG | - | chr7_3:1497592-1497611 | None:intergenic | 30.0% |
| !! | ACAAATTGATTTGGAAAGGA+AGG | + | chr7_3:1497610-1497629 | Msa1088370:intron | 30.0% |
| CCCAAGTTCATGTTAATATT+TGG | + | chr7_3:1497675-1497694 | Msa1088370:intron | 30.0% | |
| GTTGTGATTTATATGAAGAG+CGG | + | chr7_3:1497739-1497758 | Msa1088370:intron | 30.0% | |
| ACTCTCTTAAGACACTATAT+GGG | - | chr7_3:1497783-1497802 | None:intergenic | 30.0% | |
| AACTCTCTTAAGACACTATA+TGG | - | chr7_3:1497784-1497803 | None:intergenic | 30.0% | |
| ATGATTATGTGACAATGTAG+TGG | + | chr7_3:1498470-1498489 | Msa1088370:three_prime_UTR | 30.0% | |
| TGAAAAACTGATCGGATCAA+TGG | - | chr7_3:1495903-1495922 | None:intergenic | 35.0% | |
| GAAGATAAACAAATGACGAG+AGG | - | chr7_3:1495991-1496010 | None:intergenic | 35.0% | |
| CTGCATATCACAGTTTGATT+CGG | + | chr7_3:1496054-1496073 | Msa1088370:CDS | 35.0% | |
| ATAGAAGACTTACCCTTTGA+AGG | - | chr7_3:1496136-1496155 | None:intergenic | 35.0% | |
| AAGAAGAAGGATGGATGTTA+GGG | - | chr7_3:1496221-1496240 | None:intergenic | 35.0% | |
| TAAGAAGAAGGATGGATGTT+AGG | - | chr7_3:1496222-1496241 | None:intergenic | 35.0% | |
| ! | TTTTTGGATCTATAGGGAAG+TGG | - | chr7_3:1496389-1496408 | None:intergenic | 35.0% |
| TCATTGTTGGGCATATATTG+AGG | + | chr7_3:1496413-1496432 | Msa1088370:intron | 35.0% | |
| !!! | GTTTTTTGTAGCTCCAACTA+TGG | + | chr7_3:1496496-1496515 | Msa1088370:intron | 35.0% |
| !! | TTTCAAGTAATGGACATGCA+TGG | - | chr7_3:1496816-1496835 | None:intergenic | 35.0% |
| ! | GTTTGAAGCGTTTATGGTTT+GGG | - | chr7_3:1497105-1497124 | None:intergenic | 35.0% |
| ACTGCTGAAGAAAGAATCAA+CGG | - | chr7_3:1497240-1497259 | None:intergenic | 35.0% | |
| ! | CCTTTTATCATCCTTTGCAT+GGG | - | chr7_3:1497263-1497282 | None:intergenic | 35.0% |
| CCATGCAAAGGATGATAAAA+GGG | + | chr7_3:1497261-1497280 | Msa1088370:intron | 35.0% | |
| TATGCCTTGTATCACAACAA+TGG | - | chr7_3:1497569-1497588 | None:intergenic | 35.0% | |
| !! | ATTGATTTGGAAAGGAAGGT+TGG | + | chr7_3:1497614-1497633 | Msa1088370:intron | 35.0% |
| !! | TGGTACTCTATAGGTTGATT+AGG | + | chr7_3:1497695-1497714 | Msa1088370:intron | 35.0% |
| ! | AGGTTGATTAGGTACCTTAA+TGG | + | chr7_3:1497706-1497725 | Msa1088370:intron | 35.0% |
| TGATTAGGTACCTTAATGGT+TGG | + | chr7_3:1497710-1497729 | Msa1088370:intron | 35.0% | |
| CAACTCTTTACCAACCATTA+AGG | - | chr7_3:1497723-1497742 | None:intergenic | 35.0% | |
| TCTCTTAAGACACTATATGG+GGG | - | chr7_3:1497781-1497800 | None:intergenic | 35.0% | |
| CTCTCTTAAGACACTATATG+GGG | - | chr7_3:1497782-1497801 | None:intergenic | 35.0% | |
| TGGGTATTTGGAGATAAGTT+GGG | - | chr7_3:1498299-1498318 | None:intergenic | 35.0% | |
| ATGGGTATTTGGAGATAAGT+TGG | - | chr7_3:1498300-1498319 | None:intergenic | 35.0% | |
| ! | TGTTCACACTAATGGGTATT+TGG | - | chr7_3:1498311-1498330 | None:intergenic | 35.0% |
| ACCCATTAGTGTGAACATAT+CGG | + | chr7_3:1498314-1498333 | Msa1088370:three_prime_UTR | 35.0% | |
| TCAATAAGGGTAACTACACA+TGG | - | chr7_3:1498519-1498538 | None:intergenic | 35.0% | |
| TCAATGGATAGATCTCCTGA+TGG | - | chr7_3:1495887-1495906 | None:intergenic | 40.0% | |
| CTGTGATATGCAGAGAAAGA+AGG | - | chr7_3:1496047-1496066 | None:intergenic | 40.0% | |
| TATGACGTTCTCTCCTTCAA+AGG | + | chr7_3:1496120-1496139 | Msa1088370:CDS | 40.0% | |
| ATGACGTTCTCTCCTTCAAA+GGG | + | chr7_3:1496121-1496140 | Msa1088370:CDS | 40.0% | |
| ! | GCCCAACAATGAGTGATTTT+TGG | - | chr7_3:1496405-1496424 | None:intergenic | 40.0% |
| !!! | ATTAGTGGTTTTGGGTTGCT+TGG | + | chr7_3:1496741-1496760 | Msa1088370:intron | 40.0% |
| ! | GGTTTGAAGCGTTTATGGTT+TGG | - | chr7_3:1497106-1497125 | None:intergenic | 40.0% |
| CCCATGCAAAGGATGATAAA+AGG | + | chr7_3:1497260-1497279 | Msa1088370:intron | 40.0% | |
| ! | CCCTTTTATCATCCTTTGCA+TGG | - | chr7_3:1497264-1497283 | None:intergenic | 40.0% |
| ACAGGTCTCTTGTGAATAAC+CGG | - | chr7_3:1498126-1498145 | None:intergenic | 40.0% | |
| ATGATTTCAGGCTCAAGTGT+TGG | + | chr7_3:1498228-1498247 | Msa1088370:intron | 40.0% | |
| ! | TGGAGATAAGTTGGGAATGT+TGG | - | chr7_3:1498291-1498310 | None:intergenic | 40.0% |
| GCCGATATGTTCACACTAAT+GGG | - | chr7_3:1498318-1498337 | None:intergenic | 40.0% | |
| TGCCGATATGTTCACACTAA+TGG | - | chr7_3:1498319-1498338 | None:intergenic | 40.0% | |
| GCAACAAACTACGAGTCAAT+AGG | - | chr7_3:1498431-1498450 | None:intergenic | 40.0% | |
| ! | TCTCCTTTTCTACGATCTGG+TGG | - | chr7_3:1495850-1495869 | None:intergenic | 45.0% |
| ! | GTGTCTCCTTTTCTACGATC+TGG | - | chr7_3:1495853-1495872 | None:intergenic | 45.0% |
| ! | ACACCTTTTGAGCTTCCATC+AGG | + | chr7_3:1495869-1495888 | Msa1088370:CDS | 45.0% |
| TCTCCTGATGGAAGCTCAAA+AGG | - | chr7_3:1495875-1495894 | None:intergenic | 45.0% | |
| TGACGAGAGGTAGTACGAAA+CGG | - | chr7_3:1495978-1495997 | None:intergenic | 45.0% | |
| GAAGGAATTCAGCACAGACA+AGG | - | chr7_3:1496029-1496048 | None:intergenic | 45.0% | |
| TCATAGCAGCTGTAGAGTTC+CGG | - | chr7_3:1496105-1496124 | None:intergenic | 45.0% | |
| ! | AAGCGTTTATGGTTTGGGTG+AGG | - | chr7_3:1497100-1497119 | None:intergenic | 45.0% |
| ! | GAAGCGGTTTGAAGCGTTTA+TGG | - | chr7_3:1497111-1497130 | None:intergenic | 45.0% |
| TAAGTAGGCGTGACAAGAAG+CGG | - | chr7_3:1497127-1497146 | None:intergenic | 45.0% | |
| GCAGAGGCAACAATTAGCTA+AGG | - | chr7_3:1497213-1497232 | None:intergenic | 45.0% | |
| AAGAATCAACGGCAAAGCAG+AGG | - | chr7_3:1497229-1497248 | None:intergenic | 45.0% | |
| !! | TTTGGAAAGGAAGGTTGGTG+TGG | + | chr7_3:1497619-1497638 | Msa1088370:intron | 45.0% |
| GTCTTCACACTTGAGTCTGA+GGG | - | chr7_3:1498269-1498288 | None:intergenic | 45.0% | |
| GTGCCACCAGATCGTAGAAA+AGG | + | chr7_3:1495844-1495863 | Msa1088370:CDS | 50.0% | |
| TTTCTACGGAATCACCGCAC+CGG | + | chr7_3:1496083-1496102 | Msa1088370:CDS | 50.0% | |
| CAGGGGTTTCACACCATAGT+TGG | - | chr7_3:1496512-1496531 | None:intergenic | 50.0% | |
| GAGGGGCAACTTCATAGTGA+AGG | - | chr7_3:1496560-1496579 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCCCATGCAA+AGG | + | chr7_3:1497249-1497268 | Msa1088370:intron | 50.0% | |
| TTGGTGTGGCAGACAAGGAT+TGG | + | chr7_3:1497633-1497652 | Msa1088370:intron | 50.0% | |
| !! | TTCAGGCTCAAGTGTTGGCA+AGG | + | chr7_3:1498233-1498252 | Msa1088370:intron | 50.0% |
| CACTTGAGTCTGAGGGTAGT+AGG | - | chr7_3:1498262-1498281 | None:intergenic | 50.0% | |
| GGTCTTCACACTTGAGTCTG+AGG | - | chr7_3:1498270-1498289 | None:intergenic | 50.0% | |
| CTACGATCTGGTGGCACGAT+GGG | - | chr7_3:1495841-1495860 | None:intergenic | 55.0% | |
| TCTACGATCTGGTGGCACGA+TGG | - | chr7_3:1495842-1495861 | None:intergenic | 55.0% | |
| AGTACGAAACGGCGTTACCG+CGG | - | chr7_3:1495967-1495986 | None:intergenic | 55.0% | |
| !! | GAAGGTTGGTGTGGCAGACA+AGG | + | chr7_3:1497628-1497647 | Msa1088370:intron | 55.0% |
| GGGAGGAGGTAAACGCGACA+AGG | - | chr7_3:1495939-1495958 | None:intergenic | 60.0% | |
| GCAGCTGTAGAGTTCCGGTG+CGG | - | chr7_3:1496100-1496119 | None:intergenic | 60.0% | |
| CGATCTGGTGGCACGATGGG+CGG | - | chr7_3:1495838-1495857 | None:intergenic | 65.0% | |
| ACGAAACGGCGTTACCGCGG+CGG | - | chr7_3:1495964-1495983 | None:intergenic | 65.0% | |
| TTACCTCCTCCCCTCCGCCG+CGG | + | chr7_3:1495947-1495966 | Msa1088370:CDS | 70.0% | |
| AACGGCGTTACCGCGGCGGA+GGG | - | chr7_3:1495960-1495979 | None:intergenic | 70.0% | |
| AAACGGCGTTACCGCGGCGG+AGG | - | chr7_3:1495961-1495980 | None:intergenic | 70.0% | |
| TTACCGCGGCGGAGGGGAGG+AGG | - | chr7_3:1495953-1495972 | None:intergenic | 75.0% | |
| ACGGCGTTACCGCGGCGGAG+GGG | - | chr7_3:1495959-1495978 | None:intergenic | 75.0% | |
| ! | GCGTTACCGCGGCGGAGGGG+AGG | - | chr7_3:1495956-1495975 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1495830 | 1498563 | 1495830 | ID=Msa1088370;Name=Msa1088370 |
| chr7_3 | mRNA | 1495830 | 1498563 | 1495830 | ID=Msa1088370-mRNA-1;Parent=Msa1088370;Name=Msa1088370-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0.5|1|1|1|2|279|119 |
| chr7_3 | exon | 1495830 | 1496142 | 1495830 | ID=Msa1088370-mRNA-1:exon:589;Parent=Msa1088370-mRNA-1 |
| chr7_3 | exon | 1498238 | 1498563 | 1498238 | ID=Msa1088370-mRNA-1:exon:590;Parent=Msa1088370-mRNA-1 |
| chr7_3 | CDS | 1495830 | 1496142 | 1495830 | ID=Msa1088370-mRNA-1:cds;Parent=Msa1088370-mRNA-1 |
| chr7_3 | CDS | 1498238 | 1498284 | 1498238 | ID=Msa1088370-mRNA-1:cds;Parent=Msa1088370-mRNA-1 |
| chr7_3 | three_prime_UTR | 1498285 | 1498563 | 1498285 | ID=Msa1088370-mRNA-1:three_prime_utr;Parent=Msa1088370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
