Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060820 | Msa0102070 | 0.803710 | 3.060718e-49 | -8.615850e-47 |
| Msa0060820 | Msa0953510 | 0.817172 | 3.785811e-52 | -8.615850e-47 |
| Msa0060820 | Msa1088370 | 0.819379 | 1.197636e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCCTTATTGAAATTTAA+TGG | 0.190477 | 1_2:-18682032 | Msa0060820:three_prime_UTR |
| TGTTCACACTAATGGGTATT+TGG | 0.226206 | 1_2:+18682250 | None:intergenic |
| CCCATGCAAAGGATGATAAA+AGG | 0.228202 | 1_2:-18683297 | Msa0060820:CDS |
| ATTTCCATTAAATTTCAATA+AGG | 0.257974 | 1_2:+18682028 | None:intergenic |
| TGCCGATATGTTCACACTAA+TGG | 0.291732 | 1_2:+18682242 | None:intergenic |
| TGGTACTCTATAGGTTGATT+AGG | 0.332956 | 1_2:-18682862 | Msa0060820:intron |
| TTTCCATTAAATTTCAATAA+GGG | 0.335351 | 1_2:+18682029 | None:intergenic |
| GCCGATATGTTCACACTAAT+GGG | 0.367955 | 1_2:+18682243 | None:intergenic |
| GCAACAAACTACGAGTCAAT+AGG | 0.423092 | 1_2:+18682130 | None:intergenic |
| ACCCATTAGTGTGAACATAT+CGG | 0.456689 | 1_2:-18682244 | Msa0060820:exon |
| CCATGCAAAGGATGATAAAA+GGG | 0.501944 | 1_2:-18683296 | Msa0060820:intron |
| GGTCTTCACACTTGAGTCTG+AGG | 0.508440 | 1_2:+18682291 | None:intergenic |
| CACTTGAGTCTGAGGGTAGT+AGG | 0.509422 | 1_2:+18682299 | None:intergenic |
| TTCAGGCTCAAGTGTTGGCA+AGG | 0.516600 | 1_2:-18682325 | Msa0060820:intron |
| TGGGTATTTGGAGATAAGTC+GGG | 0.516612 | 1_2:+18682262 | None:intergenic |
| TGGAGATAAGTCGGGAATGT+TGG | 0.522556 | 1_2:+18682270 | None:intergenic |
| ATGGGTATTTGGAGATAAGT+CGG | 0.524513 | 1_2:+18682261 | None:intergenic |
| ATGATTTCAGGCTCAAGTGT+TGG | 0.533688 | 1_2:-18682330 | Msa0060820:intron |
| GTCTTCACACTTGAGTCTGA+GGG | 0.558845 | 1_2:+18682292 | None:intergenic |
| GCGGAGGCAACAATTAGCTA+AGG | 0.594534 | 1_2:+18683347 | None:intergenic |
| TCTTCAGCAGTCCCATGCAA+AGG | 0.603150 | 1_2:-18683308 | Msa0060820:CDS |
| AAGAATCAACGGCAAAGCGG+AGG | 0.605346 | 1_2:+18683331 | None:intergenic |
| TCAATAAGGGTAACTACACA+TGG | 0.620909 | 1_2:+18682042 | None:intergenic |
| ACTGCTGAAGAAAGAATCAA+CGG | 0.656448 | 1_2:+18683320 | None:intergenic |
| ATGATTATGTGACAATGTAG+TGG | 0.663349 | 1_2:-18682088 | Msa0060820:three_prime_UTR |
| AGAAAGAATCAACGGCAAAG+CGG | 0.720261 | 1_2:+18683328 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAACTTCAAATTAAAAT+TGG | + | chr1_2:18682108-18682127 | None:intergenic | 10.0% |
| !! | TTATAACTTCAAATTAAAAT+TGG | + | chr1_2:18682108-18682127 | None:intergenic | 10.0% |
| !!! | ATAACTTTATTTTAACAAGA+GGG | + | chr1_2:18682328-18682347 | None:intergenic | 15.0% |
| !!! | AATAACTTTATTTTAACAAG+AGG | + | chr1_2:18682329-18682348 | None:intergenic | 15.0% |
| !!! | TGCTAACTATTTTTTTTTTT+TGG | - | chr1_2:18682511-18682530 | Msa0060820:intron | 15.0% |
| !!! | TAAAATAGAATTTCAAGTAA+TGG | + | chr1_2:18682575-18682594 | None:intergenic | 15.0% |
| !!! | TAATAAAGATATTGTTTTCT+TGG | - | chr1_2:18682652-18682671 | Msa0060820:intron | 15.0% |
| !! | AGTATTATGTTATATTACTT+AGG | - | chr1_2:18682754-18682773 | Msa0060820:intron | 15.0% |
| !!! | ATAAGAAAAAAAGTACTTTA+AGG | + | chr1_2:18683183-18683202 | None:intergenic | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | + | chr1_2:18683772-18683791 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTTTATGATTTC+AGG | - | chr1_2:18683964-18683983 | Msa0060820:intron | 15.0% |
| !! | TTTCCATTAAATTTCAATAA+GGG | + | chr1_2:18684280-18684299 | None:intergenic | 15.0% |
| !! | ATTTCCATTAAATTTCAATA+AGG | + | chr1_2:18684281-18684300 | None:intergenic | 15.0% |
| !!! | ATAACTTTATTTTAACAAGA+GGG | + | chr1_2:18682328-18682347 | None:intergenic | 15.0% |
| !!! | AATAACTTTATTTTAACAAG+AGG | + | chr1_2:18682329-18682348 | None:intergenic | 15.0% |
| !!! | TGCTAACTATTTTTTTTTTT+TGG | - | chr1_2:18682511-18682530 | Msa0060820:intron | 15.0% |
| !!! | TAAAATAGAATTTCAAGTAA+TGG | + | chr1_2:18682575-18682594 | None:intergenic | 15.0% |
| !!! | TAATAAAGATATTGTTTTCT+TGG | - | chr1_2:18682652-18682671 | Msa0060820:intron | 15.0% |
| !! | AGTATTATGTTATATTACTT+AGG | - | chr1_2:18682754-18682773 | Msa0060820:intron | 15.0% |
| !!! | ATAAGAAAAAAAGTACTTTA+AGG | + | chr1_2:18683183-18683202 | None:intergenic | 15.0% |
| !! | AACATATACAAAATTTCATA+AGG | + | chr1_2:18683772-18683791 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTTTATGATTTC+AGG | - | chr1_2:18683964-18683983 | Msa0060820:intron | 15.0% |
| !! | TTTCCATTAAATTTCAATAA+GGG | + | chr1_2:18684280-18684299 | None:intergenic | 15.0% |
| !! | ATTTCCATTAAATTTCAATA+AGG | + | chr1_2:18684281-18684300 | None:intergenic | 15.0% |
| !!! | AAGTTTTTAATATGGTAACA+GGG | + | chr1_2:18682280-18682299 | None:intergenic | 20.0% |
| !!! | GCTTTAAGAAGTTTTTAATA+TGG | + | chr1_2:18682288-18682307 | None:intergenic | 20.0% |
| !!! | TAACTTTATTTTAACAAGAG+GGG | + | chr1_2:18682327-18682346 | None:intergenic | 20.0% |
| !! | TTTAGTGATATAAAGCTTAA+TGG | - | chr1_2:18682439-18682458 | Msa0060820:intron | 20.0% |
| !!! | TTGTGAATATCATTTTTCTT+AGG | - | chr1_2:18682686-18682705 | Msa0060820:intron | 20.0% |
| !! | TATATGCCTATATTAATAGT+TGG | - | chr1_2:18683200-18683219 | Msa0060820:intron | 20.0% |
| !! | ATATGCCTATATTAATAGTT+GGG | - | chr1_2:18683201-18683220 | Msa0060820:intron | 20.0% |
| !!! | TTTTTCCCAACTATTAATAT+AGG | + | chr1_2:18683209-18683228 | None:intergenic | 20.0% |
| !! | CTAGACAAAATAACATATAA+GGG | + | chr1_2:18683278-18683297 | None:intergenic | 20.0% |
| !! | GAAGAAGAGAAAAAAAAAAA+AGG | + | chr1_2:18683676-18683695 | None:intergenic | 20.0% |
| !! | AACATATACAAAATTTCACA+AGG | + | chr1_2:18683715-18683734 | None:intergenic | 20.0% |
| !! | AAAAATGTGAAGGAAAAAAA+AGG | + | chr1_2:18683741-18683760 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTCACATTTTT+AGG | - | chr1_2:18683741-18683760 | Msa0060820:intron | 20.0% |
| !!! | TTTTTGATCAAAAGAAATCT+TGG | - | chr1_2:18683926-18683945 | Msa0060820:intron | 20.0% |
| !! | TTACCCTTATTGAAATTTAA+TGG | - | chr1_2:18684274-18684293 | Msa0060820:intron | 20.0% |
| !!! | AAGTTTTTAATATGGTAACA+GGG | + | chr1_2:18682280-18682299 | None:intergenic | 20.0% |
| !!! | GCTTTAAGAAGTTTTTAATA+TGG | + | chr1_2:18682288-18682307 | None:intergenic | 20.0% |
| !!! | TAACTTTATTTTAACAAGAG+GGG | + | chr1_2:18682327-18682346 | None:intergenic | 20.0% |
| !! | TTTAGTGATATAAAGCTTAA+TGG | - | chr1_2:18682439-18682458 | Msa0060820:intron | 20.0% |
| !!! | TTGTGAATATCATTTTTCTT+AGG | - | chr1_2:18682686-18682705 | Msa0060820:intron | 20.0% |
| !! | TATATGCCTATATTAATAGT+TGG | - | chr1_2:18683200-18683219 | Msa0060820:intron | 20.0% |
| !! | ATATGCCTATATTAATAGTT+GGG | - | chr1_2:18683201-18683220 | Msa0060820:intron | 20.0% |
| !!! | TTTTTCCCAACTATTAATAT+AGG | + | chr1_2:18683209-18683228 | None:intergenic | 20.0% |
| !! | CTAGACAAAATAACATATAA+GGG | + | chr1_2:18683278-18683297 | None:intergenic | 20.0% |
| !! | GAAGAAGAGAAAAAAAAAAA+AGG | + | chr1_2:18683676-18683695 | None:intergenic | 20.0% |
| !! | AACATATACAAAATTTCACA+AGG | + | chr1_2:18683715-18683734 | None:intergenic | 20.0% |
| !! | AAAAATGTGAAGGAAAAAAA+AGG | + | chr1_2:18683741-18683760 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTCACATTTTT+AGG | - | chr1_2:18683741-18683760 | Msa0060820:intron | 20.0% |
| !!! | TTTTTGATCAAAAGAAATCT+TGG | - | chr1_2:18683926-18683945 | Msa0060820:intron | 20.0% |
| !! | TTACCCTTATTGAAATTTAA+TGG | - | chr1_2:18684274-18684293 | Msa0060820:intron | 20.0% |
| !! | AGTTTTTAATATGGTAACAG+GGG | + | chr1_2:18682279-18682298 | None:intergenic | 25.0% |
| !! | GAAGTTTTTAATATGGTAAC+AGG | + | chr1_2:18682281-18682300 | None:intergenic | 25.0% |
| ! | TCTAGAAAACATGATATTAG+TGG | - | chr1_2:18682476-18682495 | Msa0060820:intron | 25.0% |
| !! | AACATGATATTAGTGGTTTT+CGG | - | chr1_2:18682483-18682502 | Msa0060820:intron | 25.0% |
| ! | CACCATGTAAAAAAATAAGT+AGG | + | chr1_2:18682891-18682910 | None:intergenic | 25.0% |
| ! | ATAAGAAATTAACGTGATGT+TGG | + | chr1_2:18683097-18683116 | None:intergenic | 25.0% |
| ! | TTAGTAAGCAAAACTTGTAA+AGG | - | chr1_2:18683249-18683268 | Msa0060820:intron | 25.0% |
| ! | TAGTAAGCAAAACTTGTAAA+GGG | - | chr1_2:18683250-18683269 | Msa0060820:intron | 25.0% |
| ! | CCTAGACAAAATAACATATA+AGG | + | chr1_2:18683279-18683298 | None:intergenic | 25.0% |
| !!! | CCTTATATGTTATTTTGTCT+AGG | - | chr1_2:18683276-18683295 | Msa0060820:intron | 25.0% |
| !!! | ATGTTATTTTGTCTAGGAAT+TGG | - | chr1_2:18683282-18683301 | Msa0060820:intron | 25.0% |
| ! | ACCAAATATTAACATGAACT+TGG | + | chr1_2:18683428-18683447 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGTACTCTAT+AGG | - | chr1_2:18683435-18683454 | Msa0060820:intron | 25.0% |
| ! | CTTATTAGAGATAGATAACT+AGG | + | chr1_2:18683591-18683610 | None:intergenic | 25.0% |
| ! | AGTTATCTATCTCTAATAAG+AGG | - | chr1_2:18683591-18683610 | Msa0060820:intron | 25.0% |
| ! | TTTCTCTTCTTCACATATTT+AGG | - | chr1_2:18683684-18683703 | Msa0060820:intron | 25.0% |
| ! | TATAAACAAGATGAAACGTA+AGG | + | chr1_2:18683798-18683817 | None:intergenic | 25.0% |
| ! | AACACCATTGAAAATGATAT+TGG | - | chr1_2:18683822-18683841 | Msa0060820:intron | 25.0% |
| !! | TTGACCAATATCATTTTCAA+TGG | + | chr1_2:18683829-18683848 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTATTTCAACAC+CGG | - | chr1_2:18683851-18683870 | Msa0060820:intron | 25.0% |
| !! | CTAAAACTTAACTTGAAAAC+AGG | + | chr1_2:18683891-18683910 | None:intergenic | 25.0% |
| !! | AGTTTTTAATATGGTAACAG+GGG | + | chr1_2:18682279-18682298 | None:intergenic | 25.0% |
| !! | GAAGTTTTTAATATGGTAAC+AGG | + | chr1_2:18682281-18682300 | None:intergenic | 25.0% |
| ! | TCTAGAAAACATGATATTAG+TGG | - | chr1_2:18682476-18682495 | Msa0060820:intron | 25.0% |
| !! | AACATGATATTAGTGGTTTT+CGG | - | chr1_2:18682483-18682502 | Msa0060820:intron | 25.0% |
| ! | CACCATGTAAAAAAATAAGT+AGG | + | chr1_2:18682891-18682910 | None:intergenic | 25.0% |
| ! | ATAAGAAATTAACGTGATGT+TGG | + | chr1_2:18683097-18683116 | None:intergenic | 25.0% |
| ! | TTAGTAAGCAAAACTTGTAA+AGG | - | chr1_2:18683249-18683268 | Msa0060820:intron | 25.0% |
| ! | TAGTAAGCAAAACTTGTAAA+GGG | - | chr1_2:18683250-18683269 | Msa0060820:intron | 25.0% |
| ! | CCTAGACAAAATAACATATA+AGG | + | chr1_2:18683279-18683298 | None:intergenic | 25.0% |
| !!! | CCTTATATGTTATTTTGTCT+AGG | - | chr1_2:18683276-18683295 | Msa0060820:intron | 25.0% |
| !!! | ATGTTATTTTGTCTAGGAAT+TGG | - | chr1_2:18683282-18683301 | Msa0060820:intron | 25.0% |
| ! | ACCAAATATTAACATGAACT+TGG | + | chr1_2:18683428-18683447 | None:intergenic | 25.0% |
| ! | GTTAATATTTGGTACTCTAT+AGG | - | chr1_2:18683435-18683454 | Msa0060820:intron | 25.0% |
| ! | CTTATTAGAGATAGATAACT+AGG | + | chr1_2:18683591-18683610 | None:intergenic | 25.0% |
| ! | AGTTATCTATCTCTAATAAG+AGG | - | chr1_2:18683591-18683610 | Msa0060820:intron | 25.0% |
| ! | TTTCTCTTCTTCACATATTT+AGG | - | chr1_2:18683684-18683703 | Msa0060820:intron | 25.0% |
| ! | TATAAACAAGATGAAACGTA+AGG | + | chr1_2:18683798-18683817 | None:intergenic | 25.0% |
| ! | AACACCATTGAAAATGATAT+TGG | - | chr1_2:18683822-18683841 | Msa0060820:intron | 25.0% |
| !! | TTGACCAATATCATTTTCAA+TGG | + | chr1_2:18683829-18683848 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTATTTCAACAC+CGG | - | chr1_2:18683851-18683870 | Msa0060820:intron | 25.0% |
| !! | CTAAAACTTAACTTGAAAAC+AGG | + | chr1_2:18683891-18683910 | None:intergenic | 25.0% |
| !! | GAGTGATTTTTGGATCTATA+GGG | + | chr1_2:18682141-18682160 | None:intergenic | 30.0% |
| !! | TGAGTGATTTTTGGATCTAT+AGG | + | chr1_2:18682142-18682161 | None:intergenic | 30.0% |
| ATCCAAAAATCACTCATTGT+TGG | - | chr1_2:18682146-18682165 | Msa0060820:three_prime_UTR | 30.0% | |
| TCCAAAAATCACTCATTGTT+GGG | - | chr1_2:18682147-18682166 | Msa0060820:three_prime_UTR | 30.0% | |
| TGTTTAGATTCATGTGCTTT+AGG | - | chr1_2:18682194-18682213 | Msa0060820:three_prime_UTR | 30.0% | |
| TTTGATTGAAGATGTGTTTG+GGG | + | chr1_2:18682811-18682830 | None:intergenic | 30.0% | |
| GTTTGATTGAAGATGTGTTT+GGG | + | chr1_2:18682812-18682831 | None:intergenic | 30.0% | |
| AGTTTGATTGAAGATGTGTT+TGG | + | chr1_2:18682813-18682832 | None:intergenic | 30.0% | |
| !!! | CGCCTACTTATTTTTTTACA+TGG | - | chr1_2:18682886-18682905 | Msa0060820:intron | 30.0% |
| GATAATATGCAAGTAATTGC+AGG | + | chr1_2:18683057-18683076 | None:intergenic | 30.0% | |
| TAATCCATTGTTGTGATACA+AGG | - | chr1_2:18683311-18683330 | Msa0060820:CDS | 30.0% | |
| AAAGCCAAACCAAATTGATT+TGG | - | chr1_2:18683350-18683369 | Msa0060820:CDS | 30.0% | |
| CTTTCCAAATCAATTTGGTT+TGG | + | chr1_2:18683357-18683376 | None:intergenic | 30.0% | |
| !! | CAAACCAAATTGATTTGGAA+AGG | - | chr1_2:18683355-18683374 | Msa0060820:intron | 30.0% |
| GCCAAGTTCATGTTAATATT+TGG | - | chr1_2:18683424-18683443 | Msa0060820:intron | 30.0% | |
| GTTGTGATTTATATGAAGAG+CGG | - | chr1_2:18683488-18683507 | Msa0060820:intron | 30.0% | |
| ACTCTCTTAAGACACTATAT+GGG | + | chr1_2:18683532-18683551 | None:intergenic | 30.0% | |
| AACTCTCTTAAGACACTATA+TGG | + | chr1_2:18683533-18683552 | None:intergenic | 30.0% | |
| GGAATTACCTAAAAATGTGA+AGG | + | chr1_2:18683751-18683770 | None:intergenic | 30.0% | |
| ATGATTATGTGACAATGTAG+TGG | - | chr1_2:18684218-18684237 | Msa0060820:intron | 30.0% | |
| !! | GAGTGATTTTTGGATCTATA+GGG | + | chr1_2:18682141-18682160 | None:intergenic | 30.0% |
| !! | TGAGTGATTTTTGGATCTAT+AGG | + | chr1_2:18682142-18682161 | None:intergenic | 30.0% |
| ATCCAAAAATCACTCATTGT+TGG | - | chr1_2:18682146-18682165 | Msa0060820:three_prime_UTR | 30.0% | |
| TCCAAAAATCACTCATTGTT+GGG | - | chr1_2:18682147-18682166 | Msa0060820:three_prime_UTR | 30.0% | |
| TGTTTAGATTCATGTGCTTT+AGG | - | chr1_2:18682194-18682213 | Msa0060820:three_prime_UTR | 30.0% | |
| TTTGATTGAAGATGTGTTTG+GGG | + | chr1_2:18682811-18682830 | None:intergenic | 30.0% | |
| GTTTGATTGAAGATGTGTTT+GGG | + | chr1_2:18682812-18682831 | None:intergenic | 30.0% | |
| AGTTTGATTGAAGATGTGTT+TGG | + | chr1_2:18682813-18682832 | None:intergenic | 30.0% | |
| !!! | CGCCTACTTATTTTTTTACA+TGG | - | chr1_2:18682886-18682905 | Msa0060820:intron | 30.0% |
| GATAATATGCAAGTAATTGC+AGG | + | chr1_2:18683057-18683076 | None:intergenic | 30.0% | |
| TAATCCATTGTTGTGATACA+AGG | - | chr1_2:18683311-18683330 | Msa0060820:CDS | 30.0% | |
| AAAGCCAAACCAAATTGATT+TGG | - | chr1_2:18683350-18683369 | Msa0060820:CDS | 30.0% | |
| CTTTCCAAATCAATTTGGTT+TGG | + | chr1_2:18683357-18683376 | None:intergenic | 30.0% | |
| !! | CAAACCAAATTGATTTGGAA+AGG | - | chr1_2:18683355-18683374 | Msa0060820:intron | 30.0% |
| GCCAAGTTCATGTTAATATT+TGG | - | chr1_2:18683424-18683443 | Msa0060820:intron | 30.0% | |
| GTTGTGATTTATATGAAGAG+CGG | - | chr1_2:18683488-18683507 | Msa0060820:intron | 30.0% | |
| ACTCTCTTAAGACACTATAT+GGG | + | chr1_2:18683532-18683551 | None:intergenic | 30.0% | |
| AACTCTCTTAAGACACTATA+TGG | + | chr1_2:18683533-18683552 | None:intergenic | 30.0% | |
| GGAATTACCTAAAAATGTGA+AGG | + | chr1_2:18683751-18683770 | None:intergenic | 30.0% | |
| ATGATTATGTGACAATGTAG+TGG | - | chr1_2:18684218-18684237 | Msa0060820:intron | 30.0% | |
| ! | TTTTTGGATCTATAGGGAAG+TGG | + | chr1_2:18682135-18682154 | None:intergenic | 35.0% |
| ! | TGTTGGGCATATATTGATTG+AGG | - | chr1_2:18682163-18682182 | Msa0060820:three_prime_UTR | 35.0% |
| !!! | GTTTTTTGTAGCTCCAACTA+TGG | - | chr1_2:18682246-18682265 | Msa0060820:exon | 35.0% |
| !! | TTTCAAGTAATGGACATGCA+TGG | + | chr1_2:18682565-18682584 | None:intergenic | 35.0% |
| ! | GTTTGAAGCGTTTATGGTTT+GGG | + | chr1_2:18682854-18682873 | None:intergenic | 35.0% |
| ACTGCTGAAGAAAGAATCAA+CGG | + | chr1_2:18682989-18683008 | None:intergenic | 35.0% | |
| ! | CCTTTTATCATCCTTTGCAT+GGG | + | chr1_2:18683012-18683031 | None:intergenic | 35.0% |
| CCATGCAAAGGATGATAAAA+GGG | - | chr1_2:18683010-18683029 | Msa0060820:intron | 35.0% | |
| TATGCCTTGTATCACAACAA+TGG | + | chr1_2:18683318-18683337 | None:intergenic | 35.0% | |
| !!! | GGTTTGGCTTTTAGTCATTT+TGG | + | chr1_2:18683341-18683360 | None:intergenic | 35.0% |
| CCTTCCTTTCCAAATCAATT+TGG | + | chr1_2:18683362-18683381 | None:intergenic | 35.0% | |
| !! | CCAAATTGATTTGGAAAGGA+AGG | - | chr1_2:18683359-18683378 | Msa0060820:intron | 35.0% |
| !! | ATTGATTTGGAAAGGAAGGT+TGG | - | chr1_2:18683363-18683382 | Msa0060820:intron | 35.0% |
| !! | TGGTACTCTATAGGTTGATT+AGG | - | chr1_2:18683444-18683463 | Msa0060820:intron | 35.0% |
| ! | AGGTTGATTAGGTACCTTAA+TGG | - | chr1_2:18683455-18683474 | Msa0060820:intron | 35.0% |
| TGATTAGGTACCTTAATGGT+TGG | - | chr1_2:18683459-18683478 | Msa0060820:intron | 35.0% | |
| CAACTCTTTACCAACCATTA+AGG | + | chr1_2:18683472-18683491 | None:intergenic | 35.0% | |
| TCTCTTAAGACACTATATGG+GGG | + | chr1_2:18683530-18683549 | None:intergenic | 35.0% | |
| CTCTCTTAAGACACTATATG+GGG | + | chr1_2:18683531-18683550 | None:intergenic | 35.0% | |
| ATGGGTATTTGGAGATAAGT+CGG | + | chr1_2:18684048-18684067 | None:intergenic | 35.0% | |
| ! | TGTTCACACTAATGGGTATT+TGG | + | chr1_2:18684059-18684078 | None:intergenic | 35.0% |
| ACCCATTAGTGTGAACATAT+CGG | - | chr1_2:18684062-18684081 | Msa0060820:intron | 35.0% | |
| TCAATAAGGGTAACTACACA+TGG | + | chr1_2:18684267-18684286 | None:intergenic | 35.0% | |
| ! | TTTTTGGATCTATAGGGAAG+TGG | + | chr1_2:18682135-18682154 | None:intergenic | 35.0% |
| ! | TGTTGGGCATATATTGATTG+AGG | - | chr1_2:18682163-18682182 | Msa0060820:three_prime_UTR | 35.0% |
| !!! | GTTTTTTGTAGCTCCAACTA+TGG | - | chr1_2:18682246-18682265 | Msa0060820:exon | 35.0% |
| !! | TTTCAAGTAATGGACATGCA+TGG | + | chr1_2:18682565-18682584 | None:intergenic | 35.0% |
| ! | GTTTGAAGCGTTTATGGTTT+GGG | + | chr1_2:18682854-18682873 | None:intergenic | 35.0% |
| ACTGCTGAAGAAAGAATCAA+CGG | + | chr1_2:18682989-18683008 | None:intergenic | 35.0% | |
| ! | CCTTTTATCATCCTTTGCAT+GGG | + | chr1_2:18683012-18683031 | None:intergenic | 35.0% |
| CCATGCAAAGGATGATAAAA+GGG | - | chr1_2:18683010-18683029 | Msa0060820:intron | 35.0% | |
| TATGCCTTGTATCACAACAA+TGG | + | chr1_2:18683318-18683337 | None:intergenic | 35.0% | |
| !!! | GGTTTGGCTTTTAGTCATTT+TGG | + | chr1_2:18683341-18683360 | None:intergenic | 35.0% |
| CCTTCCTTTCCAAATCAATT+TGG | + | chr1_2:18683362-18683381 | None:intergenic | 35.0% | |
| !! | CCAAATTGATTTGGAAAGGA+AGG | - | chr1_2:18683359-18683378 | Msa0060820:intron | 35.0% |
| !! | ATTGATTTGGAAAGGAAGGT+TGG | - | chr1_2:18683363-18683382 | Msa0060820:intron | 35.0% |
| !! | TGGTACTCTATAGGTTGATT+AGG | - | chr1_2:18683444-18683463 | Msa0060820:intron | 35.0% |
| ! | AGGTTGATTAGGTACCTTAA+TGG | - | chr1_2:18683455-18683474 | Msa0060820:intron | 35.0% |
| TGATTAGGTACCTTAATGGT+TGG | - | chr1_2:18683459-18683478 | Msa0060820:intron | 35.0% | |
| CAACTCTTTACCAACCATTA+AGG | + | chr1_2:18683472-18683491 | None:intergenic | 35.0% | |
| TCTCTTAAGACACTATATGG+GGG | + | chr1_2:18683530-18683549 | None:intergenic | 35.0% | |
| CTCTCTTAAGACACTATATG+GGG | + | chr1_2:18683531-18683550 | None:intergenic | 35.0% | |
| ATGGGTATTTGGAGATAAGT+CGG | + | chr1_2:18684048-18684067 | None:intergenic | 35.0% | |
| ! | TGTTCACACTAATGGGTATT+TGG | + | chr1_2:18684059-18684078 | None:intergenic | 35.0% |
| ACCCATTAGTGTGAACATAT+CGG | - | chr1_2:18684062-18684081 | Msa0060820:intron | 35.0% | |
| TCAATAAGGGTAACTACACA+TGG | + | chr1_2:18684267-18684286 | None:intergenic | 35.0% | |
| ! | GCCCAACAATGAGTGATTTT+TGG | + | chr1_2:18682151-18682170 | None:intergenic | 40.0% |
| ! | GGTTTGAAGCGTTTATGGTT+TGG | + | chr1_2:18682855-18682874 | None:intergenic | 40.0% |
| AGAAAGAATCAACGGCAAAG+CGG | + | chr1_2:18682981-18683000 | None:intergenic | 40.0% | |
| CCCATGCAAAGGATGATAAA+AGG | - | chr1_2:18683009-18683028 | Msa0060820:intron | 40.0% | |
| ! | CCCTTTTATCATCCTTTGCA+TGG | + | chr1_2:18683013-18683032 | None:intergenic | 40.0% |
| TGGTCTAATGTTGCTAAGAG+AGG | - | chr1_2:18683402-18683421 | Msa0060820:intron | 40.0% | |
| ACAGGTCTCTTGTGAATAAC+CGG | + | chr1_2:18683873-18683892 | None:intergenic | 40.0% | |
| ATGATTTCAGGCTCAAGTGT+TGG | - | chr1_2:18683976-18683995 | Msa0060820:intron | 40.0% | |
| TGGGTATTTGGAGATAAGTC+GGG | + | chr1_2:18684047-18684066 | None:intergenic | 40.0% | |
| GCCGATATGTTCACACTAAT+GGG | + | chr1_2:18684066-18684085 | None:intergenic | 40.0% | |
| TGCCGATATGTTCACACTAA+TGG | + | chr1_2:18684067-18684086 | None:intergenic | 40.0% | |
| GCAACAAACTACGAGTCAAT+AGG | + | chr1_2:18684179-18684198 | None:intergenic | 40.0% | |
| ! | GCCCAACAATGAGTGATTTT+TGG | + | chr1_2:18682151-18682170 | None:intergenic | 40.0% |
| ! | GGTTTGAAGCGTTTATGGTT+TGG | + | chr1_2:18682855-18682874 | None:intergenic | 40.0% |
| AGAAAGAATCAACGGCAAAG+CGG | + | chr1_2:18682981-18683000 | None:intergenic | 40.0% | |
| CCCATGCAAAGGATGATAAA+AGG | - | chr1_2:18683009-18683028 | Msa0060820:intron | 40.0% | |
| ! | CCCTTTTATCATCCTTTGCA+TGG | + | chr1_2:18683013-18683032 | None:intergenic | 40.0% |
| TGGTCTAATGTTGCTAAGAG+AGG | - | chr1_2:18683402-18683421 | Msa0060820:intron | 40.0% | |
| ACAGGTCTCTTGTGAATAAC+CGG | + | chr1_2:18683873-18683892 | None:intergenic | 40.0% | |
| ATGATTTCAGGCTCAAGTGT+TGG | - | chr1_2:18683976-18683995 | Msa0060820:intron | 40.0% | |
| TGGGTATTTGGAGATAAGTC+GGG | + | chr1_2:18684047-18684066 | None:intergenic | 40.0% | |
| GCCGATATGTTCACACTAAT+GGG | + | chr1_2:18684066-18684085 | None:intergenic | 40.0% | |
| TGCCGATATGTTCACACTAA+TGG | + | chr1_2:18684067-18684086 | None:intergenic | 40.0% | |
| GCAACAAACTACGAGTCAAT+AGG | + | chr1_2:18684179-18684198 | None:intergenic | 40.0% | |
| ! | AAGCGTTTATGGTTTGGGTG+AGG | + | chr1_2:18682849-18682868 | None:intergenic | 45.0% |
| ! | GAAGCGGTTTGAAGCGTTTA+TGG | + | chr1_2:18682860-18682879 | None:intergenic | 45.0% |
| TAAGTAGGCGTGACAAGAAG+CGG | + | chr1_2:18682876-18682895 | None:intergenic | 45.0% | |
| !! | TTTGGAAAGGAAGGTTGGTG+TGG | - | chr1_2:18683368-18683387 | Msa0060820:intron | 45.0% |
| GTCTTCACACTTGAGTCTGA+GGG | + | chr1_2:18684017-18684036 | None:intergenic | 45.0% | |
| TGGAGATAAGTCGGGAATGT+TGG | + | chr1_2:18684039-18684058 | None:intergenic | 45.0% | |
| ! | AAGCGTTTATGGTTTGGGTG+AGG | + | chr1_2:18682849-18682868 | None:intergenic | 45.0% |
| ! | GAAGCGGTTTGAAGCGTTTA+TGG | + | chr1_2:18682860-18682879 | None:intergenic | 45.0% |
| TAAGTAGGCGTGACAAGAAG+CGG | + | chr1_2:18682876-18682895 | None:intergenic | 45.0% | |
| !! | TTTGGAAAGGAAGGTTGGTG+TGG | - | chr1_2:18683368-18683387 | Msa0060820:intron | 45.0% |
| GTCTTCACACTTGAGTCTGA+GGG | + | chr1_2:18684017-18684036 | None:intergenic | 45.0% | |
| TGGAGATAAGTCGGGAATGT+TGG | + | chr1_2:18684039-18684058 | None:intergenic | 45.0% | |
| CAGGGGTTTCACACCATAGT+TGG | + | chr1_2:18682262-18682281 | None:intergenic | 50.0% | |
| GAGGGGCAACTTCATAGTGA+AGG | + | chr1_2:18682310-18682329 | None:intergenic | 50.0% | |
| GCGGAGGCAACAATTAGCTA+AGG | + | chr1_2:18682962-18682981 | None:intergenic | 50.0% | |
| AAGAATCAACGGCAAAGCGG+AGG | + | chr1_2:18682978-18682997 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCCCATGCAA+AGG | - | chr1_2:18682998-18683017 | Msa0060820:intron | 50.0% | |
| TTGGTGTGGCAGACAAGGAT+TGG | - | chr1_2:18683382-18683401 | Msa0060820:intron | 50.0% | |
| !! | TTCAGGCTCAAGTGTTGGCA+AGG | - | chr1_2:18683981-18684000 | Msa0060820:intron | 50.0% |
| CACTTGAGTCTGAGGGTAGT+AGG | + | chr1_2:18684010-18684029 | None:intergenic | 50.0% | |
| GGTCTTCACACTTGAGTCTG+AGG | + | chr1_2:18684018-18684037 | None:intergenic | 50.0% | |
| CAGGGGTTTCACACCATAGT+TGG | + | chr1_2:18682262-18682281 | None:intergenic | 50.0% | |
| GAGGGGCAACTTCATAGTGA+AGG | + | chr1_2:18682310-18682329 | None:intergenic | 50.0% | |
| GCGGAGGCAACAATTAGCTA+AGG | + | chr1_2:18682962-18682981 | None:intergenic | 50.0% | |
| AAGAATCAACGGCAAAGCGG+AGG | + | chr1_2:18682978-18682997 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCCCATGCAA+AGG | - | chr1_2:18682998-18683017 | Msa0060820:intron | 50.0% | |
| TTGGTGTGGCAGACAAGGAT+TGG | - | chr1_2:18683382-18683401 | Msa0060820:intron | 50.0% | |
| !! | TTCAGGCTCAAGTGTTGGCA+AGG | - | chr1_2:18683981-18684000 | Msa0060820:intron | 50.0% |
| CACTTGAGTCTGAGGGTAGT+AGG | + | chr1_2:18684010-18684029 | None:intergenic | 50.0% | |
| GGTCTTCACACTTGAGTCTG+AGG | + | chr1_2:18684018-18684037 | None:intergenic | 50.0% | |
| !! | GAAGGTTGGTGTGGCAGACA+AGG | - | chr1_2:18683377-18683396 | Msa0060820:intron | 55.0% |
| !! | GAAGGTTGGTGTGGCAGACA+AGG | - | chr1_2:18683377-18683396 | Msa0060820:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18682017 | 18684311 | 18682017 | ID=Msa0060820;Name=Msa0060820 |
| chr1_2 | mRNA | 18682017 | 18684311 | 18682017 | ID=Msa0060820-mRNA-1;Parent=Msa0060820;Name=Msa0060820-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0.14|0.42|1|1|7|241|63 |
| chr1_2 | exon | 18682017 | 18682342 | 18682017 | ID=Msa0060820-mRNA-1:exon:7255;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18682863 | 18682871 | 18682863 | ID=Msa0060820-mRNA-1:exon:7254;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18683297 | 18683370 | 18683297 | ID=Msa0060820-mRNA-1:exon:7253;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18683567 | 18683572 | 18683567 | ID=Msa0060820-mRNA-1:exon:7252;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18683783 | 18683788 | 18683783 | ID=Msa0060820-mRNA-1:exon:7251;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18684122 | 18684127 | 18684122 | ID=Msa0060820-mRNA-1:exon:7250;Parent=Msa0060820-mRNA-1 |
| chr1_2 | exon | 18684306 | 18684311 | 18684306 | ID=Msa0060820-mRNA-1:exon:7249;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18684306 | 18684311 | 18684306 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18684122 | 18684127 | 18684122 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18683783 | 18683788 | 18683783 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18683567 | 18683572 | 18683567 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18683297 | 18683370 | 18683297 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18682863 | 18682871 | 18682863 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | CDS | 18682258 | 18682342 | 18682258 | ID=Msa0060820-mRNA-1:cds;Parent=Msa0060820-mRNA-1 |
| chr1_2 | three_prime_UTR | 18682017 | 18682257 | 18682017 | ID=Msa0060820-mRNA-1:three_prime_utr;Parent=Msa0060820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
