Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956620 | XP_013443358.1 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 4.82e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956620 | sp|Q9FJ98|RPD6A_ARATH | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.06e-71 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956620 | A0A072TKL5 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 2.30e-94 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086750 | Msa0956620 | 0.807745 | 4.349303e-50 | -8.615850e-47 |
| Msa0258390 | Msa0956620 | 0.811375 | 7.224513e-51 | -8.615850e-47 |
| Msa0953310 | Msa0956620 | 0.803004 | 4.286536e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956620 | MtrunA17_Chr6g0472581 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 4.43e-98 | 278 |
| Msa0956620 | MtrunA17_Chr7g0258091 | 84.138 | 145 | 22 | 1 | 1 | 144 | 1 | 145 | 7.51e-73 | 214 |
| Msa0956620 | MtrunA17_Chr6g0471881 | 95.349 | 43 | 2 | 0 | 102 | 144 | 1 | 43 | 1.10e-24 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956620 | AT5G51940.1 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.08e-72 | 214 |
| Msa0956620 | AT2G04630.1 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 9.91e-72 | 212 |
Find 53 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGAGCGTGCACGGATTT+TGG | 0.154400 | 6_3:-64360604 | Msa0956620:CDS |
| GTGTAAGGGGTTTAAGAATT+TGG | 0.204153 | 6_3:-64362057 | None:intergenic |
| TTTCTCTCGAAGCTCTTTCA+TGG | 0.342410 | 6_3:+64359433 | None:intergenic |
| GACTCATGGAAGAGGCAAAT+TGG | 0.371145 | 6_3:-64359199 | Msa0956620:CDS |
| GTCTTTCGAGGTCTTTCTGT+TGG | 0.413105 | 6_3:+64360645 | None:intergenic |
| GCCTATTGAAACCGAGGAAA+AGG | 0.427074 | 6_3:-64360679 | Msa0956620:CDS |
| GAATTCCTTACTTCAATCTC+AGG | 0.430246 | 6_3:+64360838 | None:intergenic |
| AATTGTGCAGCTATGAAGAT+TGG | 0.435283 | 6_3:-64359246 | Msa0956620:intron |
| ATTGTGCAGCTATGAAGATT+GGG | 0.436731 | 6_3:-64359245 | Msa0956620:intron |
| GTACCCGCGCTCTTCAAATC+AGG | 0.451117 | 6_3:-64360581 | Msa0956620:intron |
| GGCAAATTGGTGGTGATTGA+TGG | 0.457288 | 6_3:-64359186 | Msa0956620:exon |
| ATGTATTTCGATGTCTTTCG+AGG | 0.461953 | 6_3:+64360633 | None:intergenic |
| CATAACCTCTTATTATGCCT+TGG | 0.463278 | 6_3:-64359035 | Msa0956620:three_prime_UTR |
| ACTTCAATCTCAGGATCTAC+TGG | 0.475450 | 6_3:+64360847 | None:intergenic |
| GACTACAATGACTTGGACAT+CGG | 0.488556 | 6_3:-64361980 | Msa0956620:CDS |
| AAGTACCAAGGCATAATAAG+AGG | 0.489624 | 6_3:+64359030 | None:intergenic |
| GATTGTAATTACCTTCCATC+AGG | 0.491559 | 6_3:+64359380 | None:intergenic |
| ACAAGCGGAGCTTCAGCGTA+AGG | 0.505281 | 6_3:-64362028 | Msa0956620:five_prime_UTR |
| GGGAGTTGATGAATTGATTG+TGG | 0.509393 | 6_3:-64359224 | Msa0956620:CDS |
| CCTTCCAACTCAACCATGAC+AGG | 0.524719 | 6_3:+64360446 | None:intergenic |
| ACTACAATGACTTGGACATC+GGG | 0.528904 | 6_3:-64361979 | Msa0956620:intron |
| AAGTAACGACGGATCGTGAA+GGG | 0.541998 | 6_3:+64359404 | None:intergenic |
| CGACGACGACTACAATGACT+TGG | 0.542431 | 6_3:-64361987 | Msa0956620:CDS |
| TGCACCTGTCATGGTTGAGT+TGG | 0.544974 | 6_3:-64360450 | Msa0956620:CDS |
| ATCCGTCGTTACTTGCCTGA+TGG | 0.545359 | 6_3:-64359395 | Msa0956620:CDS |
| CTGTCATGGTTGAGTTGGAA+GGG | 0.548671 | 6_3:-64360445 | Msa0956620:CDS |
| TTACCTGATTTGAAGAGCGC+GGG | 0.554923 | 6_3:+64360578 | None:intergenic |
| AATTGATTGTGGAAGACTCA+TGG | 0.564886 | 6_3:-64359213 | Msa0956620:CDS |
| GACAACAATGATGAGATGGC+TGG | 0.565670 | 6_3:-64360705 | Msa0956620:CDS |
| AAAGTTTCTCGTACCTCAAG+CGG | 0.565990 | 6_3:+64360413 | None:intergenic |
| CAAGTAACGACGGATCGTGA+AGG | 0.577624 | 6_3:+64359403 | None:intergenic |
| GTCGTTACTTGCCTGATGGA+AGG | 0.583890 | 6_3:-64359391 | Msa0956620:intron |
| CAAGCGGAGCTTCAGCGTAA+GGG | 0.585456 | 6_3:-64362027 | Msa0956620:five_prime_UTR |
| TTGTGGAAGACTCATGGAAG+AGG | 0.587346 | 6_3:-64359207 | Msa0956620:CDS |
| TTGTAGTGTGGTACTAATGT+TGG | 0.589851 | 6_3:-64359104 | Msa0956620:three_prime_UTR |
| CCTGTCATGGTTGAGTTGGA+AGG | 0.591673 | 6_3:-64360446 | Msa0956620:CDS |
| AAGTTTCTCGTACCTCAAGC+GGG | 0.593900 | 6_3:+64360414 | None:intergenic |
| CAAGTCATTGTAGTCGTCGT+CGG | 0.596315 | 6_3:+64361988 | None:intergenic |
| ATTACCTGATTTGAAGAGCG+CGG | 0.599611 | 6_3:+64360577 | None:intergenic |
| AAGTATGAATGCACCTGTCA+TGG | 0.600527 | 6_3:-64360459 | Msa0956620:CDS |
| TTGATAGGAAGGTGCAGAGG+TGG | 0.602482 | 6_3:-64360742 | Msa0956620:intron |
| TGACGAAGTATGAGCGTGCA+CGG | 0.603590 | 6_3:-64360611 | Msa0956620:CDS |
| TGTCATGGTTGAGTTGGAAG+GGG | 0.604272 | 6_3:-64360444 | Msa0956620:CDS |
| AGGGGAAACTGACCCGCTTG+AGG | 0.609424 | 6_3:-64360426 | Msa0956620:intron |
| TCATGGAAGAGGCAAATTGG+TGG | 0.616416 | 6_3:-64359196 | Msa0956620:CDS |
| CAACGACAACAATGATGAGA+TGG | 0.626792 | 6_3:-64360709 | Msa0956620:CDS |
| CATAAACTTGACTTGTAGTG+TGG | 0.639236 | 6_3:-64359116 | Msa0956620:three_prime_UTR |
| TGGAGAGCCTATTGAAACCG+AGG | 0.643087 | 6_3:-64360685 | Msa0956620:CDS |
| TTCCATCAGGCAAGTAACGA+CGG | 0.645675 | 6_3:+64359393 | None:intergenic |
| TTGTGCAGCTATGAAGATTG+GGG | 0.646097 | 6_3:-64359244 | Msa0956620:intron |
| TGGTTGATAGGAAGGTGCAG+AGG | 0.655672 | 6_3:-64360745 | Msa0956620:intron |
| AGAATTTGGACACAAACAAG+CGG | 0.656282 | 6_3:-64362043 | Msa0956620:five_prime_UTR |
| GTAAGGGTTTCTCGTCACAA+TGG | 0.671006 | 6_3:-64362011 | Msa0956620:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAATGAAAATTAAATT+GGG | + | chr6_3:64359108-64359127 | None:intergenic | 10.0% |
| !! | TTCAAAAATGAAAATTAAAT+TGG | + | chr6_3:64359109-64359128 | None:intergenic | 10.0% |
| !!! | TGATGAATTTTTTAAATTAT+TGG | - | chr6_3:64360235-64360254 | Msa0956620:intron | 10.0% |
| !! | ATTATTGTAATATGAAAATA+TGG | + | chr6_3:64361026-64361045 | None:intergenic | 10.0% |
| !! | AAAACAATTAATAATCAATT+TGG | + | chr6_3:64361433-64361452 | None:intergenic | 10.0% |
| !! | CAAAAATGAAAATTAAATTG+GGG | + | chr6_3:64359107-64359126 | None:intergenic | 15.0% |
| !! | GGAATTAATTATTATCAATA+AGG | + | chr6_3:64359135-64359154 | None:intergenic | 15.0% |
| !! | AAAAATAATAAAACGATATC+AGG | + | chr6_3:64359156-64359175 | None:intergenic | 15.0% |
| !! | CTTAATATTCATATATGTTT+GGG | + | chr6_3:64360204-64360223 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTATTGGTTGAT+AGG | - | chr6_3:64360243-64360262 | Msa0956620:intron | 15.0% |
| !! | TTTACAATCTTATTATTCAA+AGG | + | chr6_3:64361375-64361394 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTTTTGGAA+AGG | - | chr6_3:64361666-64361685 | Msa0956620:intron | 15.0% |
| !!! | TTTTTTTTTAGTTTTGGAAA+GGG | - | chr6_3:64361667-64361686 | Msa0956620:intron | 15.0% |
| !! | ACAAAACATAAAAATGAACA+TGG | + | chr6_3:64359210-64359229 | None:intergenic | 20.0% |
| !!! | AAAAAGGTTACATTTTACTT+TGG | + | chr6_3:64359242-64359261 | None:intergenic | 20.0% |
| !! | TATAGGAAGAAAAAACAAAA+AGG | + | chr6_3:64359258-64359277 | None:intergenic | 20.0% |
| !! | GCTTAAAAACATGAATATAT+AGG | + | chr6_3:64359275-64359294 | None:intergenic | 20.0% |
| !!! | AATCTTTAAAGACATGTATA+TGG | + | chr6_3:64359724-64359743 | None:intergenic | 20.0% |
| !! | TTTAATGTAATAACATGTGT+CGG | - | chr6_3:64359886-64359905 | Msa0956620:intron | 20.0% |
| !!! | GAAAAAATTTGTTCTTTCAA+AGG | + | chr6_3:64359988-64360007 | None:intergenic | 20.0% |
| !!! | TAAACTGTATGATCTTTTTT+AGG | + | chr6_3:64360010-64360029 | None:intergenic | 20.0% |
| !! | AAAAGATCATACAGTTTAAA+AGG | - | chr6_3:64360012-64360031 | Msa0956620:intron | 20.0% |
| !! | CCTTAATATTCATATATGTT+TGG | + | chr6_3:64360205-64360224 | None:intergenic | 20.0% |
| !! | CCAAACATATATGAATATTA+AGG | - | chr6_3:64360202-64360221 | Msa0956620:intron | 20.0% |
| !! | ATCATGTTAAAACATTTACA+AGG | + | chr6_3:64360501-64360520 | None:intergenic | 20.0% |
| !! | TCTAATTTCAAAACATATGT+CGG | - | chr6_3:64360754-64360773 | Msa0956620:intron | 20.0% |
| !!! | TTTATTTTGAAATATAGACC+AGG | + | chr6_3:64360941-64360960 | None:intergenic | 20.0% |
| !! | ATATGAAAATATGGAAAGAA+GGG | + | chr6_3:64361017-64361036 | None:intergenic | 20.0% |
| !! | AATATGAAAATATGGAAAGA+AGG | + | chr6_3:64361018-64361037 | None:intergenic | 20.0% |
| !!! | AAATTTTAATATGTGAAGAG+TGG | - | chr6_3:64361049-64361068 | Msa0956620:intron | 20.0% |
| !!! | ATCAATTTGGAATTGATATA+TGG | + | chr6_3:64361420-64361439 | None:intergenic | 20.0% |
| !!! | TTTAAGCTTGTTTTGCATTA+TGG | - | chr6_3:64359288-64359307 | Msa0956620:intron | 25.0% |
| !!! | TTAAGCTTGTTTTGCATTAT+GGG | - | chr6_3:64359289-64359308 | Msa0956620:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAA+TGG | - | chr6_3:64359325-64359344 | Msa0956620:intron | 25.0% |
| !!! | TTTTTTTTTGTAAGTTCTCC+AGG | - | chr6_3:64359552-64359571 | Msa0956620:intron | 25.0% |
| ! | ATAAGCCTTTATCATGATAA+AGG | - | chr6_3:64359648-64359667 | Msa0956620:intron | 25.0% |
| ! | ATAAGCCTTTATCATGATAA+AGG | + | chr6_3:64359648-64359667 | None:intergenic | 25.0% |
| !! | TACATGTCTTTAAAGATTGA+AGG | - | chr6_3:64359726-64359745 | Msa0956620:intron | 25.0% |
| ! | ATCATACAGTTTAAAAGGAA+TGG | - | chr6_3:64360017-64360036 | Msa0956620:intron | 25.0% |
| ! | AAAACACATATCTCATTAAC+TGG | + | chr6_3:64360065-64360084 | None:intergenic | 25.0% |
| !! | GTTTTGTAGTATATTACTAG+TGG | - | chr6_3:64360080-64360099 | Msa0956620:intron | 25.0% |
| ! | TCTCTCATAACAAATTTGAA+TGG | - | chr6_3:64360109-64360128 | Msa0956620:intron | 25.0% |
| !!! | TAAATTATTGGTTGATAGGA+AGG | - | chr6_3:64360247-64360266 | Msa0956620:intron | 25.0% |
| ! | AAAGTGAATGATCAAAGTTA+AGG | + | chr6_3:64360832-64360851 | None:intergenic | 25.0% |
| ! | TTAACTTTGATCATTCACTT+TGG | - | chr6_3:64360831-64360850 | Msa0956620:intron | 25.0% |
| ! | GAGCTAAACATTCAAATTAT+AGG | + | chr6_3:64361116-64361135 | None:intergenic | 25.0% |
| ! | TCTTCAATGAACATATGTTT+AGG | + | chr6_3:64361223-64361242 | None:intergenic | 25.0% |
| ! | TAATGTTCATTGAAAAGAAC+TGG | - | chr6_3:64361274-64361293 | Msa0956620:intron | 25.0% |
| !!! | TACATATGTTTTGAAGTCAA+CGG | + | chr6_3:64361320-64361339 | None:intergenic | 25.0% |
| ! | AAGATTGTAAATATCTCCTT+TGG | - | chr6_3:64361384-64361403 | Msa0956620:intron | 25.0% |
| ! | TTGGAATTGATATATGGTAT+TGG | + | chr6_3:64361414-64361433 | None:intergenic | 25.0% |
| !!! | TTCAAATTCATTAGTTTGCA+TGG | - | chr6_3:64361460-64361479 | Msa0956620:intron | 25.0% |
| !!! | TCAAATTCATTAGTTTGCAT+GGG | - | chr6_3:64361461-64361480 | Msa0956620:intron | 25.0% |
| !! | CTTAACCATTTGATACATTT+TGG | - | chr6_3:64361502-64361521 | Msa0956620:intron | 25.0% |
| ! | TATCCAAAAATTAAGTACCA+AGG | + | chr6_3:64361985-64362004 | None:intergenic | 25.0% |
| CATTATGGGTATGTTTGAAT+TGG | - | chr6_3:64359303-64359322 | Msa0956620:intron | 30.0% | |
| TTGAACATAATCACATGTGT+TGG | - | chr6_3:64359416-64359435 | Msa0956620:CDS | 30.0% | |
| !!! | ACAGAGGTTTTAAGACTTTT+TGG | - | chr6_3:64359473-64359492 | Msa0956620:intron | 30.0% |
| TTAAACTGTTTAGCCAAACA+TGG | - | chr6_3:64359691-64359710 | Msa0956620:intron | 30.0% | |
| ATACAGTTTAAAAGGAATGG+AGG | - | chr6_3:64360020-64360039 | Msa0956620:intron | 30.0% | |
| TACAGTTTAAAAGGAATGGA+GGG | - | chr6_3:64360021-64360040 | Msa0956620:intron | 30.0% | |
| ! | TCATATATGTTTGGGATAGT+CGG | + | chr6_3:64360196-64360215 | None:intergenic | 30.0% |
| ! | GTGAAGTTAAGATTTTGTTC+TGG | - | chr6_3:64360466-64360485 | Msa0956620:intron | 30.0% |
| ! | TAACATGATGTCTTGTCTTT+TGG | - | chr6_3:64360512-64360531 | Msa0956620:intron | 30.0% |
| AGATGCTAACATAACAAGTT+AGG | + | chr6_3:64360698-64360717 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTAGTTTCCTAGA+AGG | - | chr6_3:64360913-64360932 | Msa0956620:intron | 30.0% |
| CTGAAATCTTTCATTTACAG+GGG | + | chr6_3:64361184-64361203 | None:intergenic | 30.0% | |
| CCTGAAATCTTTCATTTACA+GGG | + | chr6_3:64361185-64361204 | None:intergenic | 30.0% | |
| AAATGAAAGATTTCAGGCTT+TGG | - | chr6_3:64361188-64361207 | Msa0956620:intron | 30.0% | |
| !!! | ACATATGTTTTGAAGTCAAC+GGG | + | chr6_3:64361319-64361338 | None:intergenic | 30.0% |
| TTGTAAATATCTCCTTTGGA+TGG | - | chr6_3:64361388-64361407 | Msa0956620:intron | 30.0% | |
| TGTGTCCAAAATGTATCAAA+TGG | + | chr6_3:64361510-64361529 | None:intergenic | 30.0% | |
| ! | ATGCCTTGGTACTTAATTTT+TGG | - | chr6_3:64361979-64361998 | Msa0956620:intron | 30.0% |
| AGAATTTGGACACAAACAAG+CGG | - | chr6_3:64358957-64358976 | Msa0956620:three_prime_UTR | 35.0% | |
| ATTACCACACTCACCAAATT+AGG | - | chr6_3:64359075-64359094 | Msa0956620:three_prime_UTR | 35.0% | |
| TTACCACACTCACCAAATTA+GGG | - | chr6_3:64359076-64359095 | Msa0956620:three_prime_UTR | 35.0% | |
| ATTGGGGAAAAACCCTAATT+TGG | + | chr6_3:64359091-64359110 | None:intergenic | 35.0% | |
| ATATGGACTTAGACCATGTT+TGG | + | chr6_3:64359707-64359726 | None:intergenic | 35.0% | |
| TAGATCCTGAGATTGAAGTA+AGG | - | chr6_3:64360157-64360176 | Msa0956620:intron | 35.0% | |
| GAATTCCTTACTTCAATCTC+AGG | + | chr6_3:64360165-64360184 | None:intergenic | 35.0% | |
| ATGTATTTCGATGTCTTTCG+AGG | + | chr6_3:64360370-64360389 | None:intergenic | 35.0% | |
| TGCATTTGAGTATGTCTGAA+GGG | - | chr6_3:64360653-64360672 | Msa0956620:CDS | 35.0% | |
| CAGAGGAAACATGAACTATA+AGG | + | chr6_3:64361155-64361174 | None:intergenic | 35.0% | |
| CCCTGTAAATGAAAGATTTC+AGG | - | chr6_3:64361182-64361201 | Msa0956620:intron | 35.0% | |
| GCCTGAAATCTTTCATTTAC+AGG | + | chr6_3:64361186-64361205 | None:intergenic | 35.0% | |
| GATTGTAATTACCTTCCATC+AGG | + | chr6_3:64361623-64361642 | None:intergenic | 35.0% | |
| AATTGTGCAGCTATGAAGAT+TGG | - | chr6_3:64361754-64361773 | Msa0956620:intron | 35.0% | |
| ATTGTGCAGCTATGAAGATT+GGG | - | chr6_3:64361755-64361774 | Msa0956620:intron | 35.0% | |
| AATTGATTGTGGAAGACTCA+TGG | - | chr6_3:64361787-64361806 | Msa0956620:intron | 35.0% | |
| !! | CATAAACTTGACTTGTAGTG+TGG | - | chr6_3:64361884-64361903 | Msa0956620:intron | 35.0% |
| TTGTAGTGTGGTACTAATGT+TGG | - | chr6_3:64361896-64361915 | Msa0956620:intron | 35.0% | |
| CATAACCTCTTATTATGCCT+TGG | - | chr6_3:64361965-64361984 | Msa0956620:intron | 35.0% | |
| AAGTACCAAGGCATAATAAG+AGG | + | chr6_3:64361973-64361992 | None:intergenic | 35.0% | |
| ! | GACTACAATGACTTGGACAT+CGG | - | chr6_3:64359020-64359039 | Msa0956620:three_prime_UTR | 40.0% |
| ! | ACTACAATGACTTGGACATC+GGG | - | chr6_3:64359021-64359040 | Msa0956620:three_prime_UTR | 40.0% |
| ! | AAACCCTAATTTGGTGAGTG+TGG | + | chr6_3:64359082-64359101 | None:intergenic | 40.0% |
| TATTACCAGTGTAGACGTGT+CGG | + | chr6_3:64359377-64359396 | None:intergenic | 40.0% | |
| ! | TTTTGTAAGTTCTCCAGGAC+AGG | - | chr6_3:64359557-64359576 | Msa0956620:intron | 40.0% |
| !! | GCTATTTCTATAACCTGTCC+TGG | + | chr6_3:64359573-64359592 | None:intergenic | 40.0% |
| ACTTCAATCTCAGGATCTAC+TGG | + | chr6_3:64360156-64360175 | None:intergenic | 40.0% | |
| CAACGACAACAATGATGAGA+TGG | - | chr6_3:64360291-64360310 | Msa0956620:intron | 40.0% | |
| ! | TCCTTTTCCTCGGTTTCAAT+AGG | + | chr6_3:64360325-64360344 | None:intergenic | 40.0% |
| ! | CTCTTCTTGTTCCTTTTCCT+CGG | + | chr6_3:64360335-64360354 | None:intergenic | 40.0% |
| ! | ATTACCTGATTTGAAGAGCG+CGG | + | chr6_3:64360426-64360445 | None:intergenic | 40.0% |
| AAGTATGAATGCACCTGTCA+TGG | - | chr6_3:64360541-64360560 | Msa0956620:intron | 40.0% | |
| AAAGTTTCTCGTACCTCAAG+CGG | + | chr6_3:64360590-64360609 | None:intergenic | 40.0% | |
| CTGCATTTGAGTATGTCTGA+AGG | - | chr6_3:64360652-64360671 | Msa0956620:CDS | 40.0% | |
| ATAGACCAGTGGTCTTCATA+TGG | - | chr6_3:64360778-64360797 | Msa0956620:intron | 40.0% | |
| CAGTGGTCTTCATATGGAAT+GGG | - | chr6_3:64360784-64360803 | Msa0956620:intron | 40.0% | |
| !! | TGTCCTTGACTTGCTAACTA+TGG | - | chr6_3:64360876-64360895 | Msa0956620:intron | 40.0% |
| GATCCATAGTTAGCAAGTCA+AGG | + | chr6_3:64360882-64360901 | None:intergenic | 40.0% | |
| !! | TGACTTGCTAACTATGGATC+TGG | - | chr6_3:64360882-64360901 | Msa0956620:intron | 40.0% |
| !! | TTAGTTTCCTAGAAGGTACC+TGG | - | chr6_3:64360920-64360939 | Msa0956620:intron | 40.0% |
| ATATAGACCAGGTACCTTCT+AGG | + | chr6_3:64360930-64360949 | None:intergenic | 40.0% | |
| ! | ACTGCTAAAGTGCTCATGTA+TGG | - | chr6_3:64360975-64360994 | Msa0956620:intron | 40.0% |
| ! | CTGCTAAAGTGCTCATGTAT+GGG | - | chr6_3:64360976-64360995 | Msa0956620:intron | 40.0% |
| AATCTTTCATTTACAGGGGC+CGG | + | chr6_3:64361180-64361199 | None:intergenic | 40.0% | |
| !! | ATATGGTATTGGCCATCCAA+AGG | + | chr6_3:64361403-64361422 | None:intergenic | 40.0% |
| TTTCTCTCGAAGCTCTTTCA+TGG | + | chr6_3:64361570-64361589 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGGAAAGGGTTGAG+TGG | - | chr6_3:64361675-64361694 | Msa0956620:intron | 40.0% |
| ACAGAAAACGCATGACATGA+AGG | + | chr6_3:64361726-64361745 | None:intergenic | 40.0% | |
| TTGTGCAGCTATGAAGATTG+GGG | - | chr6_3:64361756-64361775 | Msa0956620:intron | 40.0% | |
| !! | GGGAGTTGATGAATTGATTG+TGG | - | chr6_3:64361776-64361795 | Msa0956620:intron | 40.0% |
| GTAAGGGTTTCTCGTCACAA+TGG | - | chr6_3:64358989-64359008 | Msa0956620:three_prime_UTR | 45.0% | |
| CAAGTCATTGTAGTCGTCGT+CGG | + | chr6_3:64359015-64359034 | None:intergenic | 45.0% | |
| !! | CATGTGTTGGTGTTGAACAC+CGG | - | chr6_3:64359429-64359448 | Msa0956620:CDS | 45.0% |
| !! | TGAACTATGAAGCACCGACA+CGG | - | chr6_3:64359802-64359821 | Msa0956620:intron | 45.0% |
| TACTACCAGTGTCAACGTGT+CGG | + | chr6_3:64359842-64359861 | None:intergenic | 45.0% | |
| !! | TGTCGGTGTCGTGTTGATAT+CGG | - | chr6_3:64359903-64359922 | Msa0956620:intron | 45.0% |
| GACAACAATGATGAGATGGC+TGG | - | chr6_3:64360295-64360314 | Msa0956620:intron | 45.0% | |
| GCCTATTGAAACCGAGGAAA+AGG | - | chr6_3:64360321-64360340 | Msa0956620:intron | 45.0% | |
| GTCTTTCGAGGTCTTTCTGT+TGG | + | chr6_3:64360358-64360377 | None:intergenic | 45.0% | |
| ! | TATGAGCGTGCACGGATTTT+GGG | - | chr6_3:64360397-64360416 | Msa0956620:intron | 45.0% |
| ! | TTACCTGATTTGAAGAGCGC+GGG | + | chr6_3:64360425-64360444 | None:intergenic | 45.0% |
| !! | CTGTCATGGTTGAGTTGGAA+GGG | - | chr6_3:64360555-64360574 | Msa0956620:intron | 45.0% |
| !! | TGTCATGGTTGAGTTGGAAG+GGG | - | chr6_3:64360556-64360575 | Msa0956620:intron | 45.0% |
| AAGTTTCTCGTACCTCAAGC+GGG | + | chr6_3:64360589-64360608 | None:intergenic | 45.0% | |
| CATATGTCGGTATAGACCAG+TGG | - | chr6_3:64360767-64360786 | Msa0956620:intron | 45.0% | |
| CCATTCCATATGAAGACCAC+TGG | + | chr6_3:64360786-64360805 | None:intergenic | 45.0% | |
| CCAGTGGTCTTCATATGGAA+TGG | - | chr6_3:64360783-64360802 | Msa0956620:intron | 45.0% | |
| TGGTCTTCATATGGAATGGG+AGG | - | chr6_3:64360787-64360806 | Msa0956620:intron | 45.0% | |
| GTGACCTTCTCCCTAGTTAA+CGG | - | chr6_3:64360853-64360872 | Msa0956620:CDS | 45.0% | |
| GTCAAGGACACCGTTAACTA+GGG | + | chr6_3:64360866-64360885 | None:intergenic | 45.0% | |
| AGTCAAGGACACCGTTAACT+AGG | + | chr6_3:64360867-64360886 | None:intergenic | 45.0% | |
| AGAGTGGTTCTCTTGTGAGA+TGG | - | chr6_3:64361065-64361084 | Msa0956620:intron | 45.0% | |
| ATCTTTCATTTACAGGGGCC+GGG | + | chr6_3:64361179-64361198 | None:intergenic | 45.0% | |
| AAGTAACGACGGATCGTGAA+GGG | + | chr6_3:64361599-64361618 | None:intergenic | 45.0% | |
| TTCCATCAGGCAAGTAACGA+CGG | + | chr6_3:64361610-64361629 | None:intergenic | 45.0% | |
| TTGTGGAAGACTCATGGAAG+AGG | - | chr6_3:64361793-64361812 | Msa0956620:intron | 45.0% | |
| GACTCATGGAAGAGGCAAAT+TGG | - | chr6_3:64361801-64361820 | Msa0956620:intron | 45.0% | |
| TCATGGAAGAGGCAAATTGG+TGG | - | chr6_3:64361804-64361823 | Msa0956620:intron | 45.0% | |
| !! | GGCAAATTGGTGGTGATTGA+TGG | - | chr6_3:64361814-64361833 | Msa0956620:intron | 45.0% |
| !! | CTAAAAAAAAAAAAAAAAAA+GGG | + | chr6_3:64361658-64361677 | None:intergenic | 5.0% |
| !! | ACTAAAAAAAAAAAAAAAAA+AGG | + | chr6_3:64361659-64361678 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTAGTTT+TGG | - | chr6_3:64361661-64361680 | Msa0956620:intron | 5.0% |
| CGACGACGACTACAATGACT+TGG | - | chr6_3:64359013-64359032 | Msa0956620:three_prime_UTR | 50.0% | |
| ! | TAGACGTGTCGGTGCTTCAT+AGG | + | chr6_3:64359366-64359385 | None:intergenic | 50.0% |
| GTTGAACACCGGACAATCAG+AGG | - | chr6_3:64359440-64359459 | Msa0956620:CDS | 50.0% | |
| CACCAACACCTCTGATTGTC+CGG | + | chr6_3:64359451-64359470 | None:intergenic | 50.0% | |
| TGTCAGTGTTGTGTCCGTGT+CGG | + | chr6_3:64359819-64359838 | None:intergenic | 50.0% | |
| ! | GCACTGACACATCTGATCGA+AGG | + | chr6_3:64359958-64359977 | None:intergenic | 50.0% |
| !! | TGGTTGATAGGAAGGTGCAG+AGG | - | chr6_3:64360255-64360274 | Msa0956620:intron | 50.0% |
| ! | TTGATAGGAAGGTGCAGAGG+TGG | - | chr6_3:64360258-64360277 | Msa0956620:intron | 50.0% |
| TGGAGAGCCTATTGAAACCG+AGG | - | chr6_3:64360315-64360334 | Msa0956620:intron | 50.0% | |
| TGACGAAGTATGAGCGTGCA+CGG | - | chr6_3:64360389-64360408 | Msa0956620:intron | 50.0% | |
| ! | GTATGAGCGTGCACGGATTT+TGG | - | chr6_3:64360396-64360415 | Msa0956620:intron | 50.0% |
| TGCACCTGTCATGGTTGAGT+TGG | - | chr6_3:64360550-64360569 | Msa0956620:intron | 50.0% | |
| CCTTCCAACTCAACCATGAC+AGG | + | chr6_3:64360557-64360576 | None:intergenic | 50.0% | |
| !! | CCTGTCATGGTTGAGTTGGA+AGG | - | chr6_3:64360554-64360573 | Msa0956620:intron | 50.0% |
| GACACCGTTAACTAGGGAGA+AGG | + | chr6_3:64360860-64360879 | None:intergenic | 50.0% | |
| AGTTCATGTTTCCTCTGCCC+CGG | - | chr6_3:64361158-64361177 | Msa0956620:intron | 50.0% | |
| TCTTTCATTTACAGGGGCCG+GGG | + | chr6_3:64361178-64361197 | None:intergenic | 50.0% | |
| CAAGTAACGACGGATCGTGA+AGG | + | chr6_3:64361600-64361619 | None:intergenic | 50.0% | |
| ATCCGTCGTTACTTGCCTGA+TGG | - | chr6_3:64361605-64361624 | Msa0956620:intron | 50.0% | |
| GTCGTTACTTGCCTGATGGA+AGG | - | chr6_3:64361609-64361628 | Msa0956620:intron | 50.0% | |
| ACAAGCGGAGCTTCAGCGTA+AGG | - | chr6_3:64358972-64358991 | Msa0956620:three_prime_UTR | 55.0% | |
| CAAGCGGAGCTTCAGCGTAA+GGG | - | chr6_3:64358973-64358992 | Msa0956620:three_prime_UTR | 55.0% | |
| !! | AAGCACCGACACGTCTACAC+TGG | - | chr6_3:64359369-64359388 | Msa0956620:intron | 55.0% |
| ! | CACCGGACAATCAGAGGTGT+TGG | - | chr6_3:64359446-64359465 | Msa0956620:intron | 55.0% |
| !! | CAGAGGTGTTGGTGCTACAG+AGG | - | chr6_3:64359457-64359476 | Msa0956620:intron | 55.0% |
| TGACACCGACACGTTGACAC+TGG | - | chr6_3:64359834-64359853 | Msa0956620:intron | 55.0% | |
| ! | CATCTGATCGAAGGCGTGTC+TGG | + | chr6_3:64359949-64359968 | None:intergenic | 55.0% |
| GTACCCGCGCTCTTCAAATC+AGG | - | chr6_3:64360419-64360438 | Msa0956620:intron | 55.0% | |
| AGGGGAAACTGACCCGCTTG+AGG | - | chr6_3:64360574-64360593 | Msa0956620:intron | 60.0% | |
| ATTTACAGGGGCCGGGGCAG+AGG | + | chr6_3:64361172-64361191 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 64358955 | 64362067 | 64358955 | ID=Msa0956620;Name=Msa0956620 |
| chr6_3 | mRNA | 64358955 | 64362067 | 64358955 | ID=Msa0956620-mRNA-1;Parent=Msa0956620;Name=Msa0956620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=53|1|1|1|1|1|6|234|144 |
| chr6_3 | exon | 64358955 | 64359258 | 64358955 | ID=Msa0956620-mRNA-1:exon:12256;Parent=Msa0956620-mRNA-1 |
| chr6_3 | exon | 64359392 | 64359459 | 64359392 | ID=Msa0956620-mRNA-1:exon:12255;Parent=Msa0956620-mRNA-1 |
| chr6_3 | exon | 64360427 | 64360478 | 64360427 | ID=Msa0956620-mRNA-1:exon:12254;Parent=Msa0956620-mRNA-1 |
| chr6_3 | exon | 64360582 | 64360757 | 64360582 | ID=Msa0956620-mRNA-1:exon:12253;Parent=Msa0956620-mRNA-1 |
| chr6_3 | exon | 64360849 | 64360882 | 64360849 | ID=Msa0956620-mRNA-1:exon:12252;Parent=Msa0956620-mRNA-1 |
| chr6_3 | exon | 64361980 | 64362067 | 64361980 | ID=Msa0956620-mRNA-1:exon:12251;Parent=Msa0956620-mRNA-1 |
| chr6_3 | five_prime_UTR | 64362015 | 64362067 | 64362015 | ID=Msa0956620-mRNA-1:five_prime_utr;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64361980 | 64362014 | 64361980 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64360849 | 64360882 | 64360849 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64360582 | 64360757 | 64360582 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64360427 | 64360478 | 64360427 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64359392 | 64359459 | 64359392 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | CDS | 64359189 | 64359258 | 64359189 | ID=Msa0956620-mRNA-1:cds;Parent=Msa0956620-mRNA-1 |
| chr6_3 | three_prime_UTR | 64358955 | 64359188 | 64358955 | ID=Msa0956620-mRNA-1:three_prime_utr;Parent=Msa0956620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
