Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258390 | KEH38942.1 | 86.219 | 283 | 26 | 4 | 1 | 274 | 1 | 279 | 1.61e-145 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258390 | sp|Q8LJS2|HDT1_SOYBN | 58.609 | 302 | 90 | 9 | 1 | 274 | 1 | 295 | 6.56e-93 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258390 | A0A072VB01 | 86.219 | 283 | 26 | 4 | 1 | 274 | 1 | 279 | 7.71e-146 | 419 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258390 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0258390 | 0.802250 | 6.133868e-49 | -8.615850e-47 |
| Msa0003780 | Msa0258390 | 0.803026 | 4.242409e-49 | -8.615850e-47 |
| Msa0030200 | Msa0258390 | 0.815714 | 8.025361e-52 | -8.615850e-47 |
| Msa0032090 | Msa0258390 | 0.815194 | 1.047389e-51 | -8.615850e-47 |
| Msa0032430 | Msa0258390 | 0.812593 | 3.920396e-51 | -8.615850e-47 |
| Msa0033110 | Msa0258390 | 0.828043 | 1.119668e-54 | -8.615850e-47 |
| Msa0033260 | Msa0258390 | 0.826636 | 2.433672e-54 | -8.615850e-47 |
| Msa0040690 | Msa0258390 | 0.852349 | 4.894349e-61 | -8.615850e-47 |
| Msa0043660 | Msa0258390 | 0.804362 | 2.240744e-49 | -8.615850e-47 |
| Msa0049370 | Msa0258390 | 0.807326 | 5.339335e-50 | -8.615850e-47 |
| Msa0059040 | Msa0258390 | 0.831161 | 1.952755e-55 | -8.615850e-47 |
| Msa0059110 | Msa0258390 | 0.836179 | 1.089197e-56 | -8.615850e-47 |
| Msa0070700 | Msa0258390 | 0.815538 | 8.781826e-52 | -8.615850e-47 |
| Msa0072420 | Msa0258390 | 0.855277 | 7.027538e-62 | -8.615850e-47 |
| Msa0079380 | Msa0258390 | 0.802245 | 6.146582e-49 | -8.615850e-47 |
| Msa0081780 | Msa0258390 | 0.806590 | 7.642091e-50 | -8.615850e-47 |
| Msa0086750 | Msa0258390 | 0.848676 | 5.265206e-60 | -8.615850e-47 |
| Msa0090520 | Msa0258390 | 0.852617 | 4.104780e-61 | -8.615850e-47 |
| Msa0091410 | Msa0258390 | 0.826525 | 2.586401e-54 | -8.615850e-47 |
| Msa0094470 | Msa0258390 | 0.802059 | 6.714923e-49 | -8.615850e-47 |
| Msa0105370 | Msa0258390 | 0.848681 | 5.249518e-60 | -8.615850e-47 |
| Msa0115130 | Msa0258390 | 0.803431 | 3.498363e-49 | -8.615850e-47 |
| Msa0115400 | Msa0258390 | 0.810259 | 1.259844e-50 | -8.615850e-47 |
| Msa0118590 | Msa0258390 | 0.818806 | 1.617093e-52 | -8.615850e-47 |
| Msa0120880 | Msa0258390 | 0.856878 | 2.388096e-62 | -8.615850e-47 |
| Msa0137550 | Msa0258390 | 0.803549 | 3.306147e-49 | -8.615850e-47 |
| Msa0137990 | Msa0258390 | 0.853424 | 2.411453e-61 | -8.615850e-47 |
| Msa0140770 | Msa0258390 | -0.810763 | 9.806249e-51 | -8.615850e-47 |
| Msa0144370 | Msa0258390 | 0.815789 | 7.723065e-52 | -8.615850e-47 |
| Msa0150300 | Msa0258390 | 0.812910 | 3.341952e-51 | -8.615850e-47 |
| Msa0163760 | Msa0258390 | 0.803144 | 4.009843e-49 | -8.615850e-47 |
| Msa0170200 | Msa0258390 | 0.805860 | 1.088371e-49 | -8.615850e-47 |
| Msa0172070 | Msa0258390 | 0.809764 | 1.610263e-50 | -8.615850e-47 |
| Msa0175750 | Msa0258390 | 0.812206 | 4.764564e-51 | -8.615850e-47 |
| Msa0183900 | Msa0258390 | 0.839933 | 1.178000e-57 | -8.615850e-47 |
| Msa0188350 | Msa0258390 | 0.813759 | 2.175750e-51 | -8.615850e-47 |
| Msa0189300 | Msa0258390 | 0.826996 | 1.995920e-54 | -8.615850e-47 |
| Msa0189700 | Msa0258390 | 0.835647 | 1.485534e-56 | -8.615850e-47 |
| Msa0202410 | Msa0258390 | 0.807376 | 5.209629e-50 | -8.615850e-47 |
| Msa0204960 | Msa0258390 | 0.865678 | 4.962334e-65 | -8.615850e-47 |
| Msa0214550 | Msa0258390 | 0.810381 | 1.185878e-50 | -8.615850e-47 |
| Msa0229170 | Msa0258390 | 0.803501 | 3.383032e-49 | -8.615850e-47 |
| Msa0230490 | Msa0258390 | 0.819139 | 1.358272e-52 | -8.615850e-47 |
| Msa0232010 | Msa0258390 | 0.840633 | 7.729576e-58 | -8.615850e-47 |
| Msa0232080 | Msa0258390 | 0.843946 | 1.024882e-58 | -8.615850e-47 |
| Msa0240900 | Msa0258390 | 0.838394 | 2.951759e-57 | -8.615850e-47 |
| Msa0257520 | Msa0258390 | 0.805682 | 1.186323e-49 | -8.615850e-47 |
| Msa0258390 | Msa0281530 | 0.852836 | 3.553575e-61 | -8.615850e-47 |
| Msa0258390 | Msa0289580 | 0.836442 | 9.336370e-57 | -8.615850e-47 |
| Msa0258390 | Msa0289610 | 0.827977 | 1.161057e-54 | -8.615850e-47 |
| Msa0258390 | Msa0297610 | 0.966124 | 1.668941e-125 | -8.615850e-47 |
| Msa0258390 | Msa0317910 | 0.814928 | 1.200156e-51 | -8.615850e-47 |
| Msa0258390 | Msa0317970 | 0.837687 | 4.485898e-57 | -8.615850e-47 |
| Msa0258390 | Msa0322240 | 0.856073 | 4.115921e-62 | -8.615850e-47 |
| Msa0258390 | Msa0326480 | 0.846233 | 2.470332e-59 | -8.615850e-47 |
| Msa0258390 | Msa0327300 | 0.815001 | 1.156130e-51 | -8.615850e-47 |
| Msa0258390 | Msa0327330 | 0.820668 | 6.072313e-53 | -8.615850e-47 |
| Msa0258390 | Msa0335730 | 0.877439 | 6.280292e-69 | -8.615850e-47 |
| Msa0258390 | Msa0336010 | 0.827233 | 1.752085e-54 | -8.615850e-47 |
| Msa0258390 | Msa0340380 | 0.819534 | 1.104335e-52 | -8.615850e-47 |
| Msa0258390 | Msa0343500 | 0.822213 | 2.672205e-53 | -8.615850e-47 |
| Msa0258390 | Msa0357900 | 0.881444 | 2.389222e-70 | -8.615850e-47 |
| Msa0258390 | Msa0393280 | 0.801238 | 9.896430e-49 | -8.615850e-47 |
| Msa0258390 | Msa0393370 | 0.820680 | 6.036007e-53 | -8.615850e-47 |
| Msa0258390 | Msa0395890 | 0.805783 | 1.130076e-49 | -8.615850e-47 |
| Msa0258390 | Msa0437020 | 0.834298 | 3.249246e-56 | -8.615850e-47 |
| Msa0258390 | Msa0472550 | 0.835856 | 1.315153e-56 | -8.615850e-47 |
| Msa0258390 | Msa0472620 | 0.852132 | 5.643127e-61 | -8.615850e-47 |
| Msa0258390 | Msa0497210 | 0.810125 | 1.346232e-50 | -8.615850e-47 |
| Msa0258390 | Msa0510930 | 0.824280 | 8.791516e-54 | -8.615850e-47 |
| Msa0258390 | Msa0527020 | 0.813963 | 1.961392e-51 | -8.615850e-47 |
| Msa0258390 | Msa0531230 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0258390 | Msa0531650 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
| Msa0258390 | Msa0539410 | 0.802511 | 5.418306e-49 | -8.615850e-47 |
| Msa0258390 | Msa0554920 | 0.847538 | 1.085673e-59 | -8.615850e-47 |
| Msa0258390 | Msa0556060 | 0.809618 | 1.731063e-50 | -8.615850e-47 |
| Msa0258390 | Msa0572840 | 0.820056 | 8.390208e-53 | -8.615850e-47 |
| Msa0258390 | Msa0578140 | 0.812709 | 3.699367e-51 | -8.615850e-47 |
| Msa0258390 | Msa0581110 | 0.819744 | 9.888783e-53 | -8.615850e-47 |
| Msa0258390 | Msa0581280 | 0.852161 | 5.536692e-61 | -8.615850e-47 |
| Msa0258390 | Msa0583360 | -0.818977 | 1.478920e-52 | -8.615850e-47 |
| Msa0258390 | Msa0584260 | 0.812514 | 4.080433e-51 | -8.615850e-47 |
| Msa0258390 | Msa0586420 | 0.809985 | 1.443699e-50 | -8.615850e-47 |
| Msa0258390 | Msa0588360 | 0.851010 | 1.172233e-60 | -8.615850e-47 |
| Msa0258390 | Msa0601150 | 0.810604 | 1.061207e-50 | -8.615850e-47 |
| Msa0258390 | Msa0608500 | 0.825899 | 3.645047e-54 | -8.615850e-47 |
| Msa0258390 | Msa0615440 | 0.820229 | 7.659608e-53 | -8.615850e-47 |
| Msa0258390 | Msa0626630 | 0.847273 | 1.283379e-59 | -8.615850e-47 |
| Msa0258390 | Msa0634890 | 0.802149 | 6.432645e-49 | -8.615850e-47 |
| Msa0258390 | Msa0642160 | 0.836371 | 9.730220e-57 | -8.615850e-47 |
| Msa0258390 | Msa0648780 | 0.817687 | 2.898279e-52 | -8.615850e-47 |
| Msa0258390 | Msa0649020 | 0.831708 | 1.432246e-55 | -8.615850e-47 |
| Msa0258390 | Msa0649050 | 0.843770 | 1.142261e-58 | -8.615850e-47 |
| Msa0258390 | Msa0664560 | 0.852465 | 4.536171e-61 | -8.615850e-47 |
| Msa0258390 | Msa0664750 | 0.846326 | 2.330035e-59 | -8.615850e-47 |
| Msa0258390 | Msa0669520 | 0.818609 | 1.792520e-52 | -8.615850e-47 |
| Msa0258390 | Msa0689260 | 0.816505 | 5.342983e-52 | -8.615850e-47 |
| Msa0258390 | Msa0691530 | 0.839437 | 1.585930e-57 | -8.615850e-47 |
| Msa0258390 | Msa0698490 | 0.824297 | 8.712211e-54 | -8.615850e-47 |
| Msa0258390 | Msa0698660 | 0.812245 | 4.671083e-51 | -8.615850e-47 |
| Msa0258390 | Msa0698780 | 0.807905 | 4.022277e-50 | -8.615850e-47 |
| Msa0258390 | Msa0698800 | 0.804560 | 2.037262e-49 | -8.615850e-47 |
| Msa0258390 | Msa0707250 | 0.855051 | 8.174463e-62 | -8.615850e-47 |
| Msa0258390 | Msa0725440 | 0.812770 | 3.586073e-51 | -8.615850e-47 |
| Msa0258390 | Msa0741440 | 0.816806 | 4.574326e-52 | -8.615850e-47 |
| Msa0258390 | Msa0765080 | 0.833182 | 6.175411e-56 | -8.615850e-47 |
| Msa0258390 | Msa0788850 | 0.800131 | 1.664330e-48 | -8.615850e-47 |
| Msa0258390 | Msa0796580 | -0.824131 | 9.532036e-54 | -8.615850e-47 |
| Msa0258390 | Msa0822500 | 0.810046 | 1.400209e-50 | -8.615850e-47 |
| Msa0258390 | Msa0833950 | -0.810131 | 1.342803e-50 | -8.615850e-47 |
| Msa0258390 | Msa0876810 | 0.807610 | 4.646865e-50 | -8.615850e-47 |
| Msa0258390 | Msa0881290 | 0.834107 | 3.628896e-56 | -8.615850e-47 |
| Msa0258390 | Msa0891710 | 0.807495 | 4.916116e-50 | -8.615850e-47 |
| Msa0258390 | Msa0953310 | 0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0258390 | Msa0956620 | 0.811375 | 7.224513e-51 | -8.615850e-47 |
| Msa0258390 | Msa0958000 | 0.821424 | 4.067447e-53 | -8.615850e-47 |
| Msa0258390 | Msa0989540 | 0.809880 | 1.520448e-50 | -8.615850e-47 |
| Msa0258390 | Msa1006840 | 0.856843 | 2.446343e-62 | -8.615850e-47 |
| Msa0258390 | Msa1012740 | 0.879944 | 8.240512e-70 | -8.615850e-47 |
| Msa0258390 | Msa1021470 | 0.815577 | 8.607368e-52 | -8.615850e-47 |
| Msa0258390 | Msa1021520 | 0.885250 | 9.563108e-72 | -8.615850e-47 |
| Msa0258390 | Msa1043690 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0258390 | Msa1051880 | 0.817401 | 3.360742e-52 | -8.615850e-47 |
| Msa0258390 | Msa1060230 | 0.860445 | 2.056017e-63 | -8.615850e-47 |
| Msa0258390 | Msa1060260 | 0.824185 | 9.258141e-54 | -8.615850e-47 |
| Msa0258390 | Msa1081930 | 0.803390 | 3.566815e-49 | -8.615850e-47 |
| Msa0258390 | Msa1089450 | 0.836915 | 7.070847e-57 | -8.615850e-47 |
| Msa0258390 | Msa1104140 | 0.831502 | 1.609511e-55 | -8.615850e-47 |
| Msa0258390 | Msa1105460 | 0.844888 | 5.719629e-59 | -8.615850e-47 |
| Msa0258390 | Msa1105510 | 0.808966 | 2.388981e-50 | -8.615850e-47 |
| Msa0258390 | Msa1122310 | -0.805634 | 1.214123e-49 | -8.615850e-47 |
| Msa0258390 | Msa1123770 | 0.857569 | 1.492536e-62 | -8.615850e-47 |
| Msa0258390 | Msa1126830 | 0.816798 | 4.592217e-52 | -8.615850e-47 |
| Msa0258390 | Msa1128600 | 0.811749 | 5.991740e-51 | -8.615850e-47 |
| Msa0258390 | Msa1135890 | 0.839686 | 1.365750e-57 | -8.615850e-47 |
| Msa0258390 | Msa1143370 | -0.833656 | 4.705073e-56 | -8.615850e-47 |
| Msa0258390 | Msa1148910 | 0.866149 | 3.521856e-65 | -8.615850e-47 |
| Msa0258390 | Msa1153060 | 0.801494 | 8.768773e-49 | -8.615850e-47 |
| Msa0258390 | Msa1155170 | -0.817365 | 3.424982e-52 | -8.615850e-47 |
| Msa0258390 | Msa1160740 | -0.801603 | 8.330223e-49 | -8.615850e-47 |
| Msa0258390 | Msa1165780 | 0.800727 | 1.258087e-48 | -8.615850e-47 |
| Msa0258390 | Msa1169910 | 0.860125 | 2.568949e-63 | -8.615850e-47 |
| Msa0258390 | Msa1170670 | 0.837596 | 4.735127e-57 | -8.615850e-47 |
| Msa0258390 | Msa1181250 | 0.802934 | 4.432533e-49 | -8.615850e-47 |
| Msa0258390 | Msa1181910 | 0.806012 | 1.011279e-49 | -8.615850e-47 |
| Msa0258390 | Msa1209200 | 0.856934 | 2.298470e-62 | -8.615850e-47 |
| Msa0258390 | Msa1211420 | -0.817821 | 2.703206e-52 | -8.615850e-47 |
| Msa0258390 | Msa1213480 | 0.820721 | 5.906717e-53 | -8.615850e-47 |
| Msa0258390 | Msa1218450 | 0.829896 | 3.983163e-55 | -8.615850e-47 |
| Msa0258390 | Msa1225860 | -0.821020 | 5.041169e-53 | -8.615850e-47 |
| Msa0258390 | Msa1226470 | 0.804422 | 2.176466e-49 | -8.615850e-47 |
| Msa0258390 | Msa1254730 | 0.816793 | 4.605069e-52 | -8.615850e-47 |
| Msa0258390 | Msa1262890 | 0.830697 | 2.537178e-55 | -8.615850e-47 |
| Msa0258390 | Msa1264210 | 0.804080 | 2.564496e-49 | -8.615850e-47 |
| Msa0258390 | Msa1265630 | 0.807110 | 5.930944e-50 | -8.615850e-47 |
| Msa0258390 | Msa1275680 | 0.817515 | 3.168863e-52 | -8.615850e-47 |
| Msa0258390 | Msa1277260 | 0.803493 | 3.395293e-49 | -8.615850e-47 |
| Msa0258390 | Msa1294820 | 0.816862 | 4.442851e-52 | -8.615850e-47 |
| Msa0258390 | Msa1300380 | 0.823265 | 1.520332e-53 | -8.615850e-47 |
| Msa0258390 | Msa1315890 | 0.849016 | 4.236835e-60 | -8.615850e-47 |
| Msa0258390 | Msa1332590 | 0.821627 | 3.651337e-53 | -8.615850e-47 |
| Msa0258390 | Msa1341060 | 0.801501 | 8.741197e-49 | -8.615850e-47 |
| Msa0258390 | Msa1351540 | 0.802344 | 5.867003e-49 | -8.615850e-47 |
| Msa0258390 | Msa1358250 | 0.814866 | 1.238474e-51 | -8.615850e-47 |
| Msa0258390 | Msa1374120 | 0.809830 | 1.558921e-50 | -8.615850e-47 |
| Msa0258390 | Msa1385720 | 0.859737 | 3.363002e-63 | -8.615850e-47 |
| Msa0258390 | Msa1392780 | 0.812477 | 4.156277e-51 | -8.615850e-47 |
| Msa0258390 | Msa1393570 | 0.836443 | 9.329482e-57 | -8.615850e-47 |
| Msa0258390 | Msa1394290 | 0.834795 | 2.438015e-56 | -8.615850e-47 |
| Msa0258390 | Msa1405930 | 0.842858 | 2.000118e-58 | -8.615850e-47 |
| Msa0258390 | Msa1411970 | 0.807900 | 4.032213e-50 | -8.615850e-47 |
| Msa0258390 | Msa1434090 | 0.855768 | 5.053545e-62 | -8.615850e-47 |
| Msa0258390 | Msa1434950 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
| Msa0258390 | Msa1435390 | 0.878275 | 3.204483e-69 | -8.615850e-47 |
| Msa0258390 | Msa1440310 | 0.836021 | 1.194204e-56 | -8.615850e-47 |
| Msa0258390 | Msa1440930 | 0.868144 | 8.123356e-66 | -8.615850e-47 |
| Msa0258390 | Msa1445910 | -0.826310 | 2.910772e-54 | -8.615850e-47 |
| Msa0258390 | Msa1457920 | 0.828946 | 6.773788e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258390 | MtrunA17_Chr2g0320884 | 81.271 | 299 | 27 | 5 | 1 | 274 | 35 | 329 | 4.90e-140 | 397 |
| Msa0258390 | MtrunA17_Chr4g0027181 | 46.502 | 243 | 121 | 4 | 1 | 240 | 5 | 241 | 9.81e-53 | 172 |
| Msa0258390 | MtrunA17_Chr7g0265761 | 41.558 | 308 | 127 | 8 | 1 | 274 | 1 | 289 | 3.81e-47 | 159 |
| Msa0258390 | MtrunA17_Chr4g0027191 | 68.966 | 87 | 27 | 0 | 2 | 88 | 6 | 92 | 1.17e-34 | 128 |
| Msa0258390 | MtrunA17_Chr4g0027191 | 53.125 | 96 | 34 | 4 | 179 | 271 | 282 | 369 | 1.59e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258390 | AT5G03740.1 | 39.535 | 301 | 145 | 9 | 1 | 273 | 1 | 292 | 4.94e-43 | 149 |
| Msa0258390 | AT5G22650.2 | 40.068 | 292 | 134 | 9 | 1 | 259 | 1 | 284 | 1.12e-32 | 122 |
| Msa0258390 | AT5G22650.1 | 39.932 | 293 | 134 | 10 | 1 | 259 | 1 | 285 | 4.70e-31 | 117 |
| Msa0258390 | AT3G44750.2 | 51.807 | 83 | 37 | 2 | 1 | 83 | 1 | 80 | 6.02e-21 | 89.4 |
| Msa0258390 | AT3G44750.1 | 51.807 | 83 | 37 | 2 | 1 | 83 | 1 | 80 | 6.36e-21 | 89.4 |
| Msa0258390 | AT2G27840.4 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 1.42e-15 | 72.8 |
| Msa0258390 | AT2G27840.1 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.10e-15 | 72.0 |
| Msa0258390 | AT2G27840.3 | 30.189 | 212 | 90 | 7 | 1 | 194 | 1 | 172 | 2.42e-12 | 65.1 |
Find 87 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAATGGAGTTT+TGG | 0.108547 | 2_2:-54714141 | Msa0258390:exon |
| TCCTCCAGACTTGGGAGTTT+TGG | 0.188316 | 2_2:+54711404 | None:intergenic |
| GGAGTCTTTCCACCTTTCTT+AGG | 0.193593 | 2_2:+54711438 | None:intergenic |
| ATATAGTGATTCAGGGAAAA+AGG | 0.211279 | 2_2:+54714243 | None:intergenic |
| TTGTGATTATATAGTGATTC+AGG | 0.214608 | 2_2:+54714235 | None:intergenic |
| GAAACTTTCTCCTCTGCTTT+TGG | 0.244330 | 2_2:+54712796 | None:intergenic |
| GAGAGAGTAATGAGTATGTT+AGG | 0.245853 | 2_2:+54714165 | None:intergenic |
| GAAAGTTTCTGAACCTAAAA+AGG | 0.272635 | 2_2:-54712782 | Msa0258390:CDS |
| TAGCGGGGTTAGGAGTAAAT+TGG | 0.289159 | 2_2:-54710847 | Msa0258390:three_prime_UTR |
| GATGAATCTGATGATGAAAA+TGG | 0.302701 | 2_2:-54712673 | Msa0258390:CDS |
| TGGGGAACAAAAGCTTGTTT+TGG | 0.309523 | 2_2:-54713607 | Msa0258390:CDS |
| TAATGAGTATGTTAGGGTTT+TGG | 0.315356 | 2_2:+54714172 | None:intergenic |
| TTTGATTTCTTGGTAGAAAC+TGG | 0.315658 | 2_2:+54712159 | None:intergenic |
| CATTGGGCCTCTTCTTTCCC+TGG | 0.324129 | 2_2:+54712199 | None:intergenic |
| TCTTCATCTTCCTCATCCTT+TGG | 0.331069 | 2_2:+54712712 | None:intergenic |
| TGGAAGCTGTTTGACTTTGA+TGG | 0.335428 | 2_2:-54711038 | Msa0258390:three_prime_UTR |
| ACAACCTTCACGTGTTTAAC+AGG | 0.347024 | 2_2:+54712739 | None:intergenic |
| TTTAACAGGTGCAGCATTCT+TGG | 0.349198 | 2_2:+54712753 | None:intergenic |
| TGAATTAGGTGCTGAGGTTA+AGG | 0.367665 | 2_2:-54713844 | Msa0258390:intron |
| AGGACATTCAACTCTGAAAC+TGG | 0.374828 | 2_2:-54711246 | Msa0258390:CDS |
| TTATGCCACTCGAGCTATAT+AGG | 0.375198 | 2_2:-54710948 | Msa0258390:three_prime_UTR |
| TGGTTATTTACCTCAAAGTT+GGG | 0.376973 | 2_2:-54713626 | Msa0258390:CDS |
| TTCTGCTCTGTGTTAATCAA+TGG | 0.388646 | 2_2:+54712925 | None:intergenic |
| GCAGCTGCATCAAGGTCATA+TGG | 0.393293 | 2_2:+54713798 | None:intergenic |
| GAGTCTTTCCACCTTTCTTA+GGG | 0.394889 | 2_2:+54711439 | None:intergenic |
| GAAATGAACACTAGCAGCTT+TGG | 0.398995 | 2_2:+54713506 | None:intergenic |
| TAAATAACCACAGGCTCGTT+TGG | 0.405456 | 2_2:+54713639 | None:intergenic |
| TCTAGAAACCTAGCGGGGTT+AGG | 0.418338 | 2_2:-54710857 | Msa0258390:three_prime_UTR |
| GTGAGTATCCTAAGGATGTT+AGG | 0.420054 | 2_2:-54711123 | Msa0258390:three_prime_UTR |
| GTGGTTATTTACCTCAAAGT+TGG | 0.423882 | 2_2:-54713627 | Msa0258390:CDS |
| GATGCCAAAACTCCCAAGTC+TGG | 0.432291 | 2_2:-54711408 | Msa0258390:CDS |
| TTGGTCTCACCAGTCTTCTC+AGG | 0.439494 | 2_2:+54712126 | None:intergenic |
| AGAGAGTAATGAGTATGTTA+GGG | 0.441983 | 2_2:+54714166 | None:intergenic |
| AGCTGCTATTCACATTTCTC+AGG | 0.449259 | 2_2:-54713781 | Msa0258390:intron |
| TGTGATTATATAGTGATTCA+GGG | 0.452751 | 2_2:+54714236 | None:intergenic |
| AATTGTAGTTTGTCGACAAA+TGG | 0.453497 | 2_2:-54711173 | Msa0258390:three_prime_UTR |
| TTTGTGGTGATGACATGTTT+TGG | 0.453561 | 2_2:-54711058 | Msa0258390:three_prime_UTR |
| TCTTGATATTGTCCTTGAAA+AGG | 0.456315 | 2_2:-54713550 | Msa0258390:CDS |
| TTGTTAGATGGTAAGAAAGC+TGG | 0.456417 | 2_2:-54711480 | Msa0258390:intron |
| TTAGGTGCTGAGGTTAAGGT+TGG | 0.459431 | 2_2:-54713840 | Msa0258390:intron |
| GGAAGTGTGTGTGGCGTAAG+AGG | 0.464861 | 2_2:+54714193 | None:intergenic |
| GTGTGTGGCGTAAGAGGAAG+AGG | 0.467745 | 2_2:+54714199 | None:intergenic |
| AGAGAGTCCTCCTCCAGACT+TGG | 0.471298 | 2_2:+54711395 | None:intergenic |
| TTTCCACCTTTCTTAGGGTG+AGG | 0.472414 | 2_2:+54711444 | None:intergenic |
| AGCGGGGTTAGGAGTAAATT+GGG | 0.478917 | 2_2:-54710846 | Msa0258390:three_prime_UTR |
| GTTTCTAGATACTCTCTAAA+GGG | 0.492189 | 2_2:+54710871 | None:intergenic |
| ACTTCACTTAGCAGCATGCT+TGG | 0.492494 | 2_2:+54711203 | None:intergenic |
| GGTTTCTAGATACTCTCTAA+AGG | 0.493068 | 2_2:+54710870 | None:intergenic |
| CTCTCTCTCACTGTTTCCAA+TGG | 0.495005 | 2_2:-54714149 | Msa0258390:exon |
| TCTGCTCTGTGTTAATCAAT+GGG | 0.495154 | 2_2:+54712926 | None:intergenic |
| GTAAGAGGAAGAGGAAATGA+AGG | 0.513748 | 2_2:+54714208 | None:intergenic |
| GACAGACACCTAACATCCTT+AGG | 0.519803 | 2_2:+54711115 | None:intergenic |
| AATTTACTCCTAACCCCGCT+AGG | 0.523549 | 2_2:+54710849 | None:intergenic |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.527324 | 2_2:-54712316 | Msa0258390:intron |
| TGTGCCATTACCTTCTTCAC+AGG | 0.535491 | 2_2:+54712306 | None:intergenic |
| CAGCTGCATCAAGGTCATAT+GGG | 0.546249 | 2_2:+54713799 | None:intergenic |
| TGAGAGTGATGAGGATGATG+AGG | 0.559141 | 2_2:-54712337 | Msa0258390:CDS |
| GAGAGTCCTCCTCCAGACTT+GGG | 0.565423 | 2_2:+54711396 | None:intergenic |
| AGAGTATCTAGAAACCTAGC+GGG | 0.567677 | 2_2:-54710863 | Msa0258390:three_prime_UTR |
| AATGCTACTCCTGAGAAGAC+TGG | 0.569825 | 2_2:-54712135 | Msa0258390:intron |
| GCAACTCCTCACCCTAAGAA+AGG | 0.575686 | 2_2:-54711450 | Msa0258390:CDS |
| GGTTGTTGATCCAAAGGATG+AGG | 0.576616 | 2_2:-54712722 | Msa0258390:CDS |
| GAGTTACCCCAAAACTCCAT+TGG | 0.578782 | 2_2:+54714133 | None:intergenic |
| CGTGAAGGTTGTTGATCCAA+AGG | 0.578956 | 2_2:-54712728 | Msa0258390:CDS |
| GTTATTGTATAGGTTGCACT+TGG | 0.583377 | 2_2:-54713681 | Msa0258390:intron |
| AAAACTCCCAAGTCTGGAGG+AGG | 0.583660 | 2_2:-54711402 | Msa0258390:CDS |
| TGTGAATAGCAGCTGCATCA+AGG | 0.595728 | 2_2:+54713790 | None:intergenic |
| GTAGTATGGTGAGTATCCTA+AGG | 0.595850 | 2_2:-54711131 | Msa0258390:three_prime_UTR |
| TAAGAGGAAGAGGAAATGAA+GGG | 0.600160 | 2_2:+54714209 | None:intergenic |
| TTGATTAACACAGAGCAGAA+TGG | 0.601793 | 2_2:-54712922 | Msa0258390:intron |
| GGTTATTTACCTCAAAGTTG+GGG | 0.606552 | 2_2:-54713625 | Msa0258390:CDS |
| GATTTCTGAATTAGGTGCTG+AGG | 0.607620 | 2_2:-54713850 | Msa0258390:intron |
| AAAACCAGAACCAAAAGCAG+AGG | 0.625041 | 2_2:-54712806 | Msa0258390:CDS |
| TGGACTGCAACAACATAGCA+AGG | 0.629185 | 2_2:-54711226 | Msa0258390:CDS |
| AATAGCCTATATAGCTCGAG+TGG | 0.629986 | 2_2:+54710943 | None:intergenic |
| ACTCCTCACCCTAAGAAAGG+TGG | 0.633029 | 2_2:-54711447 | Msa0258390:CDS |
| AAATGGAAGCTCTGATGATG+AGG | 0.649458 | 2_2:-54712656 | Msa0258390:intron |
| AAGAGGAAGAGGAAATGAAG+GGG | 0.652096 | 2_2:+54714210 | None:intergenic |
| GCCAAAACTCCCAAGTCTGG+AGG | 0.652249 | 2_2:-54711405 | Msa0258390:CDS |
| ACTTTGAGGTAAATAACCAC+AGG | 0.655718 | 2_2:+54713630 | None:intergenic |
| AGACAAACCAAACGAGCCTG+TGG | 0.660313 | 2_2:-54713646 | Msa0258390:CDS |
| ACAATATCAAGAGAAATCTG+AGG | 0.664546 | 2_2:+54713561 | None:intergenic |
| AGATGATGATGAGAGTGATG+AGG | 0.674103 | 2_2:-54712346 | Msa0258390:CDS |
| TGCACCTGTTAAACACGTGA+AGG | 0.692630 | 2_2:-54712743 | Msa0258390:CDS |
| GAGAGTATCTAGAAACCTAG+CGG | 0.695129 | 2_2:-54710864 | Msa0258390:three_prime_UTR |
| GAGTATCTAGAAACCTAGCG+GGG | 0.735925 | 2_2:-54710862 | Msa0258390:three_prime_UTR |
| AGGTTGACCAGGGAAAGAAG+AGG | 0.740019 | 2_2:-54712206 | Msa0258390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAGTTTACATTTTATAT+TGG | - | chr2_2:54711950-54711969 | Msa0258390:intron | 10.0% |
| !!! | ATTTTGTGATAAATATATAT+TGG | - | chr2_2:54712988-54713007 | Msa0258390:intron | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | - | chr2_2:54713751-54713770 | Msa0258390:intron | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | - | chr2_2:54713752-54713771 | Msa0258390:intron | 10.0% |
| !!! | GAATTATATTATTTTTTAAG+AGG | - | chr2_2:54714163-54714182 | Msa0258390:five_prime_UTR | 10.0% |
| !! | AACTATATAATAACAAATCA+AGG | + | chr2_2:54711637-54711656 | None:intergenic | 15.0% |
| !!! | TTTTAGATGATATTTTTCTA+AGG | - | chr2_2:54711666-54711685 | Msa0258390:intron | 15.0% |
| !! | TATAATTATTATGGTTACTA+CGG | - | chr2_2:54712823-54712842 | Msa0258390:intron | 15.0% |
| !! | TTAAATTGTGTTAGATATTA+AGG | - | chr2_2:54713423-54713442 | Msa0258390:intron | 15.0% |
| !! | AAAGGATATATATCTATATA+TGG | + | chr2_2:54713550-54713569 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | + | chr2_2:54713747-54713766 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTTTTGTTGGTT+GGG | - | chr2_2:54712201-54712220 | Msa0258390:CDS | 20.0% |
| !!! | AAATAACCATTGTTCTTTTT+AGG | - | chr2_2:54712252-54712271 | Msa0258390:intron | 20.0% |
| !!! | TTAATCAATGTTTTGTTTAG+TGG | - | chr2_2:54712451-54712470 | Msa0258390:intron | 20.0% |
| !!! | TTTATGTTGATAATTGTAGA+TGG | - | chr2_2:54712696-54712715 | Msa0258390:CDS | 20.0% |
| !! | TCACAAAATATATTACAACT+TGG | + | chr2_2:54712977-54712996 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCTTGTTGATT+CGG | - | chr2_2:54713020-54713039 | Msa0258390:intron | 20.0% |
| !! | CAAACAATGTTTCAATTTAA+GGG | + | chr2_2:54713474-54713493 | None:intergenic | 20.0% |
| !! | TCAAACAATGTTTCAATTTA+AGG | + | chr2_2:54713475-54713494 | None:intergenic | 20.0% |
| !! | AAAAATTTAAACGCGAATTA+AGG | + | chr2_2:54713583-54713602 | None:intergenic | 20.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | + | chr2_2:54713746-54713765 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTCATATGTAGTA+TGG | - | chr2_2:54713936-54713955 | Msa0258390:intron | 20.0% |
| ! | TGTGATTATATAGTGATTCA+GGG | + | chr2_2:54710848-54710867 | None:intergenic | 25.0% |
| ! | TTGTGATTATATAGTGATTC+AGG | + | chr2_2:54710849-54710868 | None:intergenic | 25.0% |
| ! | ATCAAAAATCAAGAGTAGTT+CGG | + | chr2_2:54711093-54711112 | None:intergenic | 25.0% |
| !!! | TATACGTTGATTTCTGAATT+AGG | - | chr2_2:54711223-54711242 | Msa0258390:CDS | 25.0% |
| ! | TTGTAGGTTTACTAAATTTC+TGG | - | chr2_2:54711374-54711393 | Msa0258390:intron | 25.0% |
| !!! | TTTCTGGTTTGTTATTGTAT+AGG | - | chr2_2:54711390-54711409 | Msa0258390:CDS | 25.0% |
| ! | ATTTAGATAACAGATCTGTA+AGG | + | chr2_2:54711915-54711934 | None:intergenic | 25.0% |
| !!! | TTGTCATGCAATTGTTTTTA+AGG | - | chr2_2:54712055-54712074 | Msa0258390:intron | 25.0% |
| ! | AAAAAAAAAATCAGACCAAG+AGG | + | chr2_2:54712194-54712213 | None:intergenic | 25.0% |
| !!! | TGGTCTGATTTTTTTTTTGT+TGG | - | chr2_2:54712196-54712215 | Msa0258390:CDS | 25.0% |
| !!! | CTGATTTTTTTTTTGTTGGT+TGG | - | chr2_2:54712200-54712219 | Msa0258390:CDS | 25.0% |
| ! | TTTCAACATTGTGTATGTAT+TGG | + | chr2_2:54712547-54712566 | None:intergenic | 25.0% |
| !! | ACATTTGTTAAATGTGCTAT+TGG | - | chr2_2:54712573-54712592 | Msa0258390:intron | 25.0% |
| !! | CATTTGTTAAATGTGCTATT+GGG | - | chr2_2:54712574-54712593 | Msa0258390:intron | 25.0% |
| ! | TTATTTCGTGTTCTCAATTT+AGG | - | chr2_2:54712600-54712619 | Msa0258390:intron | 25.0% |
| ! | TATTTCGTGTTCTCAATTTA+GGG | - | chr2_2:54712601-54712620 | Msa0258390:intron | 25.0% |
| !!! | ATAATCGTCTTTTTGTTTGA+AGG | - | chr2_2:54712855-54712874 | Msa0258390:intron | 25.0% |
| !!! | AGTAGCATTTTTTGATTTCT+TGG | + | chr2_2:54712935-54712954 | None:intergenic | 25.0% |
| ! | ACAATTTAACAACAGTTAAC+TGG | + | chr2_2:54713155-54713174 | None:intergenic | 25.0% |
| !! | GCGTTTAAATTTTTGTTAGA+TGG | - | chr2_2:54713589-54713608 | Msa0258390:CDS | 25.0% |
| ! | TTAGCAACACTTCAAAAAAA+TGG | + | chr2_2:54714270-54714289 | None:intergenic | 25.0% |
| TATAGTGATTCAGGGAAAAA+GGG | + | chr2_2:54710840-54710859 | None:intergenic | 30.0% | |
| ATATAGTGATTCAGGGAAAA+AGG | + | chr2_2:54710841-54710860 | None:intergenic | 30.0% | |
| ! | TAATGAGTATGTTAGGGTTT+TGG | + | chr2_2:54710912-54710931 | None:intergenic | 30.0% |
| AGAGAGTAATGAGTATGTTA+GGG | + | chr2_2:54710918-54710937 | None:intergenic | 30.0% | |
| AACTTGTATTCACGTGTATT+AGG | - | chr2_2:54711179-54711198 | Msa0258390:three_prime_UTR | 30.0% | |
| ACTTGTATTCACGTGTATTA+GGG | - | chr2_2:54711180-54711199 | Msa0258390:three_prime_UTR | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | - | chr2_2:54711306-54711325 | Msa0258390:intron | 30.0% | |
| !! | GTTCTATGTTGTGTTTTTGT+AGG | - | chr2_2:54711358-54711377 | Msa0258390:intron | 30.0% |
| TGGTTATTTACCTCAAAGTT+GGG | - | chr2_2:54711455-54711474 | Msa0258390:CDS | 30.0% | |
| ACAATATCAAGAGAAATCTG+AGG | + | chr2_2:54711523-54711542 | None:intergenic | 30.0% | |
| TCTTGATATTGTCCTTGAAA+AGG | - | chr2_2:54711531-54711550 | Msa0258390:intron | 30.0% | |
| GATGACAAATAGACTAATCT+GGG | + | chr2_2:54711743-54711762 | None:intergenic | 30.0% | |
| ATGATGTCAATATACACGTT+AGG | + | chr2_2:54711784-54711803 | None:intergenic | 30.0% | |
| CCAAAACACATCAATAGTTA+AGG | + | chr2_2:54711992-54712011 | None:intergenic | 30.0% | |
| ! | CCTTAACTATTGATGTGTTT+TGG | - | chr2_2:54711989-54712008 | Msa0258390:intron | 30.0% |
| ATTGCATGACAAATTTCAGA+GGG | + | chr2_2:54712047-54712066 | None:intergenic | 30.0% | |
| AATTGCATGACAAATTTCAG+AGG | + | chr2_2:54712048-54712067 | None:intergenic | 30.0% | |
| AGGTTAGATTAAGATTGTGT+TGG | - | chr2_2:54712075-54712094 | Msa0258390:intron | 30.0% | |
| ! | GGTTTTCCTAAAAAGAACAA+TGG | + | chr2_2:54712261-54712280 | None:intergenic | 30.0% |
| GAAAGTTTCTGAACCTAAAA+AGG | - | chr2_2:54712299-54712318 | Msa0258390:intron | 30.0% | |
| ! | GATGAATCTGATGATGAAAA+TGG | - | chr2_2:54712408-54712427 | Msa0258390:intron | 30.0% |
| !! | TATAAGTTGTCCATTTTTGC+TGG | - | chr2_2:54712482-54712501 | Msa0258390:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+GGG | + | chr2_2:54712901-54712920 | None:intergenic | 30.0% |
| !!! | AGTTTTTGAAGCAGATTCAT+TGG | + | chr2_2:54712902-54712921 | None:intergenic | 30.0% |
| ! | TTTGATTTCTTGGTAGAAAC+TGG | + | chr2_2:54712925-54712944 | None:intergenic | 30.0% |
| ! | TAGTTCTTGCATTTTGTTGA+TGG | - | chr2_2:54713072-54713091 | Msa0258390:intron | 30.0% |
| AATGTTTCAATTTAAGGGTG+GGG | + | chr2_2:54713469-54713488 | None:intergenic | 30.0% | |
| CAATGTTTCAATTTAAGGGT+GGG | + | chr2_2:54713470-54713489 | None:intergenic | 30.0% | |
| ACAATGTTTCAATTTAAGGG+TGG | + | chr2_2:54713471-54713490 | None:intergenic | 30.0% | |
| AATTAAGGATGTGCAACAAA+AGG | + | chr2_2:54713568-54713587 | None:intergenic | 30.0% | |
| !! | GGTTGTGATTGATTTTTAGA+TGG | - | chr2_2:54713773-54713792 | Msa0258390:intron | 30.0% |
| !! | TTTTTGTTGTCTTCATTACC+AGG | - | chr2_2:54713815-54713834 | Msa0258390:CDS | 30.0% |
| ! | AATTGTAGTTTGTCGACAAA+TGG | - | chr2_2:54713908-54713927 | Msa0258390:intron | 30.0% |
| GTTCACTAGATCAAAAATCA+AGG | + | chr2_2:54713991-54714010 | None:intergenic | 30.0% | |
| ! | TTTTTGATCTAGTGAACATG+AGG | - | chr2_2:54713994-54714013 | Msa0258390:intron | 30.0% |
| ! | TTTTGATCTAGTGAACATGA+GGG | - | chr2_2:54713995-54714014 | Msa0258390:intron | 30.0% |
| ! | GTTTCTAGATACTCTCTAAA+GGG | + | chr2_2:54714213-54714232 | None:intergenic | 30.0% |
| ! | AAGGGTTTTTGCAAAAGCTA+GGG | + | chr2_2:54710822-54710841 | None:intergenic | 35.0% |
| ! | AAAGGGTTTTTGCAAAAGCT+AGG | + | chr2_2:54710823-54710842 | None:intergenic | 35.0% |
| TAAGAGGAAGAGGAAATGAA+GGG | + | chr2_2:54710875-54710894 | None:intergenic | 35.0% | |
| GAGAGAGTAATGAGTATGTT+AGG | + | chr2_2:54710919-54710938 | None:intergenic | 35.0% | |
| ! | ACTGTTTCCAATGGAGTTTT+GGG | - | chr2_2:54710941-54710960 | Msa0258390:three_prime_UTR | 35.0% |
| GAAGAAAGGTAGACAATGAA+CGG | + | chr2_2:54710982-54711001 | None:intergenic | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | - | chr2_2:54711305-54711324 | Msa0258390:intron | 35.0% | |
| GTTATTGTATAGGTTGCACT+TGG | - | chr2_2:54711400-54711419 | Msa0258390:CDS | 35.0% | |
| !! | ACTTTGAGGTAAATAACCAC+AGG | + | chr2_2:54711454-54711473 | None:intergenic | 35.0% |
| GTGGTTATTTACCTCAAAGT+TGG | - | chr2_2:54711454-54711473 | Msa0258390:CDS | 35.0% | |
| GGTTATTTACCTCAAAGTTG+GGG | - | chr2_2:54711456-54711475 | Msa0258390:CDS | 35.0% | |
| ! | AGGAATTTTGTCCCTGTTTA+GGG | + | chr2_2:54711503-54711522 | None:intergenic | 35.0% |
| ! | ATAGCTCAAACTCCTTTTCA+AGG | + | chr2_2:54711546-54711565 | None:intergenic | 35.0% |
| GGATGACAAATAGACTAATC+TGG | + | chr2_2:54711744-54711763 | None:intergenic | 35.0% | |
| TAGGCTATTATTGCAACACT+AGG | + | chr2_2:54711765-54711784 | None:intergenic | 35.0% | |
| !! | GTTTAGTTTGTTGCTATCCT+AGG | - | chr2_2:54711887-54711906 | Msa0258390:intron | 35.0% |
| TCTGCTCTGTGTTAATCAAT+GGG | + | chr2_2:54712158-54712177 | None:intergenic | 35.0% | |
| TTCTGCTCTGTGTTAATCAA+TGG | + | chr2_2:54712159-54712178 | None:intergenic | 35.0% | |
| TTGATTAACACAGAGCAGAA+TGG | - | chr2_2:54712159-54712178 | Msa0258390:CDS | 35.0% | |
| GACATCATTACCAGCAAAAA+TGG | + | chr2_2:54712495-54712514 | None:intergenic | 35.0% | |
| ACATGCATAATCAAGACTGA+AGG | + | chr2_2:54712517-54712536 | None:intergenic | 35.0% | |
| AATAAATGTTGACCTCAGAC+AGG | + | chr2_2:54712670-54712689 | None:intergenic | 35.0% | |
| !! | TTTTTGTTTGAAGGTTGACC+AGG | - | chr2_2:54712864-54712883 | Msa0258390:intron | 35.0% |
| !! | TTTTGTTTGAAGGTTGACCA+GGG | - | chr2_2:54712865-54712884 | Msa0258390:intron | 35.0% |
| !! | TTGTTGATTCGGTGTTAGAT+CGG | - | chr2_2:54713031-54713050 | Msa0258390:intron | 35.0% |
| AATGCAAGAACTAGTGCAAA+TGG | + | chr2_2:54713065-54713084 | None:intergenic | 35.0% | |
| !! | TGCATTTTGTTGATGGATCA+TGG | - | chr2_2:54713079-54713098 | Msa0258390:intron | 35.0% |
| GTCAATGCTGAAATTGTAGT+TGG | - | chr2_2:54713196-54713215 | Msa0258390:intron | 35.0% | |
| !! | ATTGTAGTTGGTTTGCATCA+TGG | - | chr2_2:54713208-54713227 | Msa0258390:intron | 35.0% |
| !! | AATGTAGCTTGTTTGCATCA+AGG | - | chr2_2:54713332-54713351 | Msa0258390:intron | 35.0% |
| TTGTTAGATGGTAAGAAAGC+TGG | - | chr2_2:54713601-54713620 | Msa0258390:CDS | 35.0% | |
| !! | TTTGTGGTGATGACATGTTT+TGG | - | chr2_2:54714023-54714042 | Msa0258390:intron | 35.0% |
| ! | GGTTTCTAGATACTCTCTAA+AGG | + | chr2_2:54714214-54714233 | None:intergenic | 35.0% |
| ! | TGCAAAAGCTAGGGTTTTTG+CGG | + | chr2_2:54710813-54710832 | None:intergenic | 40.0% |
| AAGAGGAAGAGGAAATGAAG+GGG | + | chr2_2:54710874-54710893 | None:intergenic | 40.0% | |
| GTAAGAGGAAGAGGAAATGA+AGG | + | chr2_2:54710876-54710895 | None:intergenic | 40.0% | |
| ! | CACTGTTTCCAATGGAGTTT+TGG | - | chr2_2:54710940-54710959 | Msa0258390:three_prime_UTR | 40.0% |
| ! | CTGTTTCCAATGGAGTTTTG+GGG | - | chr2_2:54710942-54710961 | Msa0258390:three_prime_UTR | 40.0% |
| CATCGTTATTCAGCGAAGAA+AGG | + | chr2_2:54710996-54711015 | None:intergenic | 40.0% | |
| ! | GATTTCTGAATTAGGTGCTG+AGG | - | chr2_2:54711231-54711250 | Msa0258390:CDS | 40.0% |
| !! | TGAATTAGGTGCTGAGGTTA+AGG | - | chr2_2:54711237-54711256 | Msa0258390:CDS | 40.0% |
| AGCTGCTATTCACATTTCTC+AGG | - | chr2_2:54711300-54711319 | Msa0258390:intron | 40.0% | |
| TAAATAACCACAGGCTCGTT+TGG | + | chr2_2:54711445-54711464 | None:intergenic | 40.0% | |
| !! | TGGGGAACAAAAGCTTGTTT+TGG | - | chr2_2:54711474-54711493 | Msa0258390:CDS | 40.0% |
| !! | GGGGAACAAAAGCTTGTTTT+GGG | - | chr2_2:54711475-54711494 | Msa0258390:CDS | 40.0% |
| !!! | TTGTTTTGGGAACCCTAAAC+AGG | - | chr2_2:54711488-54711507 | Msa0258390:intron | 40.0% |
| !!! | TGTTTTGGGAACCCTAAACA+GGG | - | chr2_2:54711489-54711508 | Msa0258390:intron | 40.0% |
| ! | GAGGAATTTTGTCCCTGTTT+AGG | + | chr2_2:54711504-54711523 | None:intergenic | 40.0% |
| GAAATGAACACTAGCAGCTT+TGG | + | chr2_2:54711578-54711597 | None:intergenic | 40.0% | |
| TAACACAGAGCAGAATGGTA+TGG | - | chr2_2:54712164-54712183 | Msa0258390:CDS | 40.0% | |
| AACACAGAGCAGAATGGTAT+GGG | - | chr2_2:54712165-54712184 | Msa0258390:CDS | 40.0% | |
| AAAACCAGAACCAAAAGCAG+AGG | - | chr2_2:54712275-54712294 | Msa0258390:intron | 40.0% | |
| ! | GAAACTTTCTCCTCTGCTTT+TGG | + | chr2_2:54712288-54712307 | None:intergenic | 40.0% |
| ! | TTCTTGGCATCAGCCTTTTT+AGG | + | chr2_2:54712315-54712334 | None:intergenic | 40.0% |
| TTTAACAGGTGCAGCATTCT+TGG | + | chr2_2:54712331-54712350 | None:intergenic | 40.0% | |
| ACAACCTTCACGTGTTTAAC+AGG | + | chr2_2:54712345-54712364 | None:intergenic | 40.0% | |
| TCTTCATCTTCCTCATCCTT+TGG | + | chr2_2:54712372-54712391 | None:intergenic | 40.0% | |
| ! | AAATGGAAGCTCTGATGATG+AGG | - | chr2_2:54712425-54712444 | Msa0258390:intron | 40.0% |
| GTCTTGATTATGCATGTCTG+AGG | - | chr2_2:54712520-54712539 | Msa0258390:intron | 40.0% | |
| ! | AGATGATGATGAGAGTGATG+AGG | - | chr2_2:54712735-54712754 | Msa0258390:CDS | 40.0% |
| GTCAGACATGCTGAAATTTG+AGG | - | chr2_2:54713504-54713523 | Msa0258390:intron | 40.0% | |
| GAGTCTTTCCACCTTTCTTA+GGG | + | chr2_2:54713645-54713664 | None:intergenic | 40.0% | |
| AGTTTCAGAGTTGAATGTCC+TGG | + | chr2_2:54713836-54713855 | None:intergenic | 40.0% | |
| !! | AGGACATTCAACTCTGAAAC+TGG | - | chr2_2:54713835-54713854 | Msa0258390:CDS | 40.0% |
| GTAGTATGGTGAGTATCCTA+AGG | - | chr2_2:54713950-54713969 | Msa0258390:intron | 40.0% | |
| GTGAGTATCCTAAGGATGTT+AGG | - | chr2_2:54713958-54713977 | Msa0258390:intron | 40.0% | |
| ! | GAACATGAGGGAAAGTTTTG+TGG | - | chr2_2:54714007-54714026 | Msa0258390:intron | 40.0% |
| ! | TGGAAGCTGTTTGACTTTGA+TGG | - | chr2_2:54714043-54714062 | Msa0258390:intron | 40.0% |
| TTATGCCACTCGAGCTATAT+AGG | - | chr2_2:54714133-54714152 | Msa0258390:intron | 40.0% | |
| AATAGCCTATATAGCTCGAG+TGG | + | chr2_2:54714141-54714160 | None:intergenic | 40.0% | |
| !! | GAGAGTATCTAGAAACCTAG+CGG | - | chr2_2:54714217-54714236 | Msa0258390:five_prime_UTR | 40.0% |
| ! | AGAGTATCTAGAAACCTAGC+GGG | - | chr2_2:54714218-54714237 | Msa0258390:five_prime_UTR | 40.0% |
| !!! | TAGGGTTTTGGAAGTGTGTG+TGG | + | chr2_2:54710900-54710919 | None:intergenic | 45.0% |
| CTCTCTCTCACTGTTTCCAA+TGG | - | chr2_2:54710932-54710951 | Msa0258390:three_prime_UTR | 45.0% | |
| GAGTTACCCCAAAACTCCAT+TGG | + | chr2_2:54710951-54710970 | None:intergenic | 45.0% | |
| !! | TTAGGTGCTGAGGTTAAGGT+TGG | - | chr2_2:54711241-54711260 | Msa0258390:CDS | 45.0% |
| CAGCTGCATCAAGGTCATAT+GGG | + | chr2_2:54711285-54711304 | None:intergenic | 45.0% | |
| TGTGAATAGCAGCTGCATCA+AGG | + | chr2_2:54711294-54711313 | None:intergenic | 45.0% | |
| ! | GCTTTTGTTCCCCAACTTTG+AGG | + | chr2_2:54711468-54711487 | None:intergenic | 45.0% |
| GCTGCTAGTGTTCATTTCTG+TGG | - | chr2_2:54711580-54711599 | Msa0258390:intron | 45.0% | |
| ! | AACAGATCTGTAAGGCACCT+AGG | + | chr2_2:54711907-54711926 | None:intergenic | 45.0% |
| GAATGGTATGGGTTTCCTCT+TGG | - | chr2_2:54712176-54712195 | Msa0258390:CDS | 45.0% | |
| !!! | TTCTCCTCTGCTTTTGGTTC+TGG | + | chr2_2:54712282-54712301 | None:intergenic | 45.0% |
| TGCACCTGTTAAACACGTGA+AGG | - | chr2_2:54712338-54712357 | Msa0258390:CDS | 45.0% | |
| CGTGAAGGTTGTTGATCCAA+AGG | - | chr2_2:54712353-54712372 | Msa0258390:CDS | 45.0% | |
| GGTTGTTGATCCAAAGGATG+AGG | - | chr2_2:54712359-54712378 | Msa0258390:CDS | 45.0% | |
| ! | GTCCTTTTTATGCCTGTCTG+AGG | - | chr2_2:54712655-54712674 | Msa0258390:intron | 45.0% |
| GACCTCAGACAGGCATAAAA+AGG | + | chr2_2:54712660-54712679 | None:intergenic | 45.0% | |
| TGAGAGTGATGAGGATGATG+AGG | - | chr2_2:54712744-54712763 | Msa0258390:CDS | 45.0% | |
| GACTCCTGTGAAGAAGGTAA+TGG | - | chr2_2:54712771-54712790 | Msa0258390:CDS | 45.0% | |
| ! | TGTGCCATTACCTTCTTCAC+AGG | + | chr2_2:54712778-54712797 | None:intergenic | 45.0% |
| AATGCTACTCCTGAGAAGAC+TGG | - | chr2_2:54712946-54712965 | Msa0258390:CDS | 45.0% | |
| TTTCCACCTTTCTTAGGGTG+AGG | + | chr2_2:54713640-54713659 | None:intergenic | 45.0% | |
| GGAGTCTTTCCACCTTTCTT+AGG | + | chr2_2:54713646-54713665 | None:intergenic | 45.0% | |
| !! | GGAGTTTTGGCATCACTGTT+AGG | + | chr2_2:54713667-54713686 | None:intergenic | 45.0% |
| TGGACTGCAACAACATAGCA+AGG | - | chr2_2:54713855-54713874 | Msa0258390:intron | 45.0% | |
| ACTTCACTTAGCAGCATGCT+TGG | + | chr2_2:54713881-54713900 | None:intergenic | 45.0% | |
| GACAGACACCTAACATCCTT+AGG | + | chr2_2:54713969-54713988 | None:intergenic | 45.0% | |
| GAGTATCTAGAAACCTAGCG+GGG | - | chr2_2:54714219-54714238 | Msa0258390:five_prime_UTR | 45.0% | |
| AATTTACTCCTAACCCCGCT+AGG | + | chr2_2:54714235-54714254 | None:intergenic | 45.0% | |
| TAGCGGGGTTAGGAGTAAAT+TGG | - | chr2_2:54714234-54714253 | Msa0258390:five_prime_UTR | 45.0% | |
| AGCGGGGTTAGGAGTAAATT+GGG | - | chr2_2:54714235-54714254 | Msa0258390:five_prime_UTR | 45.0% | |
| !!! | TTTATTTGTTATAATTATTA+TGG | - | chr2_2:54712814-54712833 | Msa0258390:intron | 5.0% |
| GCAGCTGCATCAAGGTCATA+TGG | + | chr2_2:54711286-54711305 | None:intergenic | 50.0% | |
| AGACAAACCAAACGAGCCTG+TGG | - | chr2_2:54711435-54711454 | Msa0258390:CDS | 50.0% | |
| !!! | TGTTTTGGCTTGCACGAGTG+AGG | - | chr2_2:54712004-54712023 | Msa0258390:intron | 50.0% |
| ACGAGTGAGGAAGGTGAAAC+TGG | - | chr2_2:54712017-54712036 | Msa0258390:intron | 50.0% | |
| GGAAGAGACTCCTGTGAAGA+AGG | - | chr2_2:54712765-54712784 | Msa0258390:CDS | 50.0% | |
| AGGTTGACCAGGGAAAGAAG+AGG | - | chr2_2:54712875-54712894 | Msa0258390:intron | 50.0% | |
| TTGGTCTCACCAGTCTTCTC+AGG | + | chr2_2:54712958-54712977 | None:intergenic | 50.0% | |
| GCAACTCCTCACCCTAAGAA+AGG | - | chr2_2:54713631-54713650 | Msa0258390:CDS | 50.0% | |
| ACTCCTCACCCTAAGAAAGG+TGG | - | chr2_2:54713634-54713653 | Msa0258390:CDS | 50.0% | |
| GATGCCAAAACTCCCAAGTC+TGG | - | chr2_2:54713673-54713692 | Msa0258390:intron | 50.0% | |
| ! | TCCTCCAGACTTGGGAGTTT+TGG | + | chr2_2:54713680-54713699 | None:intergenic | 50.0% |
| AAAACTCCCAAGTCTGGAGG+AGG | - | chr2_2:54713679-54713698 | Msa0258390:intron | 50.0% | |
| TCTAGAAACCTAGCGGGGTT+AGG | - | chr2_2:54714224-54714243 | Msa0258390:five_prime_UTR | 50.0% | |
| GTGTGTGGCGTAAGAGGAAG+AGG | + | chr2_2:54710885-54710904 | None:intergenic | 55.0% | |
| ! | GGAAGTGTGTGTGGCGTAAG+AGG | + | chr2_2:54710891-54710910 | None:intergenic | 55.0% |
| !! | TTGGCTTGCACGAGTGAGGA+AGG | - | chr2_2:54712008-54712027 | Msa0258390:intron | 55.0% |
| CATTGGGCCTCTTCTTTCCC+TGG | + | chr2_2:54712885-54712904 | None:intergenic | 55.0% | |
| GCCAAAACTCCCAAGTCTGG+AGG | - | chr2_2:54713676-54713695 | Msa0258390:intron | 55.0% | |
| GAGAGTCCTCCTCCAGACTT+GGG | + | chr2_2:54713688-54713707 | None:intergenic | 55.0% | |
| AGAGAGTCCTCCTCCAGACT+TGG | + | chr2_2:54713689-54713708 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 54710804 | 54714299 | 54710804 | ID=Msa0258390;Name=Msa0258390 |
| chr2_2 | mRNA | 54710804 | 54714299 | 54710804 | ID=Msa0258390-mRNA-1;Parent=Msa0258390;Name=Msa0258390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147|0.87|0.88|1|0.87|0.88|9|402|274 |
| chr2_2 | exon | 54710804 | 54711266 | 54710804 | ID=Msa0258390-mRNA-1:exon:16518;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54711378 | 54711495 | 54711378 | ID=Msa0258390-mRNA-1:exon:16517;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54712136 | 54712226 | 54712136 | ID=Msa0258390-mRNA-1:exon:16516;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54712317 | 54712388 | 54712317 | ID=Msa0258390-mRNA-1:exon:16515;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54712657 | 54712829 | 54712657 | ID=Msa0258390-mRNA-1:exon:16514;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54712923 | 54712967 | 54712923 | ID=Msa0258390-mRNA-1:exon:16513;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54713517 | 54713691 | 54713517 | ID=Msa0258390-mRNA-1:exon:16512;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54713782 | 54713858 | 54713782 | ID=Msa0258390-mRNA-1:exon:16511;Parent=Msa0258390-mRNA-1 |
| chr2_2 | exon | 54714140 | 54714299 | 54714140 | ID=Msa0258390-mRNA-1:exon:16510;Parent=Msa0258390-mRNA-1 |
| chr2_2 | five_prime_UTR | 54714153 | 54714299 | 54714153 | ID=Msa0258390-mRNA-1:five_prime_utr;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54714140 | 54714152 | 54714140 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54713782 | 54713858 | 54713782 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54713517 | 54713691 | 54713517 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54712923 | 54712967 | 54712923 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54712657 | 54712829 | 54712657 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54712317 | 54712388 | 54712317 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54712136 | 54712226 | 54712136 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54711378 | 54711495 | 54711378 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | CDS | 54711206 | 54711266 | 54711206 | ID=Msa0258390-mRNA-1:cds;Parent=Msa0258390-mRNA-1 |
| chr2_2 | three_prime_UTR | 54710804 | 54711205 | 54710804 | ID=Msa0258390-mRNA-1:three_prime_utr;Parent=Msa0258390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
