AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0957130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957130 MtrunA17_Chr6g0474101 93.243 74 5 0 1 74 364 437 4.85e-45 149
Msa0957130 MtrunA17_Chr8g0350811 52.239 67 32 0 1 67 834 900 7.43e-23 90.1
Msa0957130 MtrunA17_Chr8g0348461 53.731 67 31 0 1 67 449 515 3.41e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957130 AT5G51980.1 69.014 71 22 0 1 71 365 435 3.18e-32 115
Msa0957130 AT5G51980.2 69.014 71 22 0 1 71 365 435 3.18e-32 115
Msa0957130 AT4G25440.2 68.657 67 21 0 1 67 358 424 2.83e-29 107
Msa0957130 AT4G25440.3 68.657 67 21 0 1 67 358 424 2.83e-29 107
Msa0957130 AT4G25440.1 68.657 67 21 0 1 67 358 424 2.83e-29 107
Msa0957130 AT5G40880.1 47.619 63 33 0 1 63 403 465 5.17e-18 76.6
Msa0957130 AT5G40880.2 47.619 63 33 0 1 63 374 436 5.91e-18 76.3
Msa0957130 AT5G49200.1 42.857 63 36 0 1 63 350 412 3.16e-16 71.6

Find 58 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACTTTATTAGACGTTAT+TGG 0.152559 6_3:-67063915 None:intergenic
TGGAGAGCAGCAGTGAATTT+AGG 0.245089 6_3:-67064071 None:intergenic
GCTGTACGCTGCAGTGGATT+CGG 0.271686 6_3:+67064159 Msa0957130:three_prime_UTR
TTTCTGCAAGAAGGTAATTC+AGG 0.277058 6_3:+67064002 Msa0957130:three_prime_UTR
CTGTACGCTGCAGTGGATTC+GGG 0.328880 6_3:+67064160 Msa0957130:three_prime_UTR
TGGCACTAAGCTTGCTTTAG+AGG 0.330971 6_3:+67064274 Msa0957130:three_prime_UTR
TTATTGGACGTGGCCGGTTC+GGG 0.342950 6_3:-67063899 None:intergenic
TAGAATGTGAGCTGTGGTTT+TGG 0.351111 6_3:+67064234 Msa0957130:three_prime_UTR
TCCAATAACGTCTAATAAAG+TGG 0.355662 6_3:+67063914 Msa0957130:exon
GTAATTCAGGGTGTGAAGTA+TGG 0.360608 6_3:+67064015 Msa0957130:three_prime_UTR
ATTGCAAGAGCATAGAAGTA+TGG 0.362587 6_3:-67063210 None:intergenic
GAACCGGCCAAGTGAGAGTT+TGG 0.365422 6_3:+67063867 Msa0957130:CDS
AAATATGTAATCTATGTTTA+CGG 0.367386 6_3:+67064197 Msa0957130:three_prime_UTR
GCCAAGTGAGAGTTTGGAAT+TGG 0.367620 6_3:+67063873 Msa0957130:CDS
TAAATCTCGGCCGCTGAACT+TGG 0.370772 6_3:-67064127 None:intergenic
GTTATTGGACGTGGCCGGTT+CGG 0.371965 6_3:-67063900 None:intergenic
GATTGTACCTTATGCATGAA+TGG 0.434728 6_3:-67064105 None:intergenic
GAGGAGAATAATTGCTAGAA+TGG 0.437646 6_3:+67064046 Msa0957130:three_prime_UTR
TTCTTCACTGGTGATGGAAC+CGG 0.439518 6_3:+67063851 Msa0957130:CDS
TAGGGTATAATCACCCTTTG+TGG 0.446419 6_3:+67063164 Msa0957130:five_prime_UTR
TGATGTTATGATCTGCTTGT+AGG 0.450170 6_3:+67063145 Msa0957130:five_prime_UTR
GGCACTAAGCTTGCTTTAGA+GGG 0.474183 6_3:+67064275 Msa0957130:three_prime_UTR
TTCTGCAAGAAGGTAATTCA+GGG 0.479713 6_3:+67064003 Msa0957130:three_prime_UTR
GATGTTATGATCTGCTTGTA+GGG 0.488487 6_3:+67063146 Msa0957130:five_prime_UTR
TTGGAATTGGATACCCGAAC+CGG 0.490982 6_3:+67063886 Msa0957130:CDS
TGGTGTTAAGCGAGTATCCT+TGG 0.492234 6_3:+67064254 Msa0957130:three_prime_UTR
AGCATATTCTTCACTGGTGA+TGG 0.496351 6_3:+67063845 Msa0957130:CDS
CCTGGTAGCATATTCTTCAC+TGG 0.512028 6_3:+67063839 Msa0957130:CDS
TGCATCATGCATCCCACAAA+GGG 0.514045 6_3:-67063177 None:intergenic
AGGGTATAATCACCCTTTGT+GGG 0.517484 6_3:+67063165 Msa0957130:five_prime_UTR
GGAGCAATTCAGACTGGTCC+TGG 0.519581 6_3:+67063821 Msa0957130:CDS
TAGACGTTATTGGACGTGGC+CGG 0.521928 6_3:-67063905 None:intergenic
CGGCCGAGATTTAACCGAGC+AGG 0.522095 6_3:+67064137 Msa0957130:three_prime_UTR
ATTCCAAACTCTCACTTGGC+CGG 0.524871 6_3:-67063870 None:intergenic
GATATTCAACAAACAAGAGG+TGG 0.537111 6_3:+67063799 Msa0957130:CDS
TTGCAAGAGCATAGAAGTAT+GGG 0.552250 6_3:-67063209 None:intergenic
GGATGCATGATGCACAAGGC+AGG 0.559825 6_3:+67063186 Msa0957130:exon
TCCAATTCCAAACTCTCACT+TGG 0.560466 6_3:-67063874 None:intergenic
CCAATAACGTCTAATAAAGT+GGG 0.567650 6_3:+67063915 Msa0957130:exon
TTGTTCAGATTTGCAGAGAG+AGG 0.570280 6_3:+67063773 Msa0957130:intron
ACTGCAGCGTACAGCCTGCT+CGG 0.570830 6_3:-67064151 None:intergenic
GGATTCGGGCTAGAACGAAA+AGG 0.571673 6_3:+67064174 Msa0957130:three_prime_UTR
GAGCAGGCTGTACGCTGCAG+TGG 0.576202 6_3:+67064153 Msa0957130:three_prime_UTR
TTATTAGACGTTATTGGACG+TGG 0.576310 6_3:-67063909 None:intergenic
CAGCCTGCTCGGTTAAATCT+CGG 0.581348 6_3:-67064140 None:intergenic
CTAAAGCAAGCTTAGTGCCA+AGG 0.590383 6_3:-67064271 None:intergenic
GAGGTGGGAGCAATTCAGAC+TGG 0.601059 6_3:+67063815 Msa0957130:CDS
CCAGTGAAGAATATGCTACC+AGG 0.618179 6_3:-67063839 None:intergenic
TAAGATATTCAACAAACAAG+AGG 0.623609 6_3:+67063796 Msa0957130:CDS
GTGCATCATGCATCCCACAA+AGG 0.625754 6_3:-67063178 None:intergenic
ATATTCAACAAACAAGAGGT+GGG 0.641434 6_3:+67063800 Msa0957130:CDS
GTGAAGTATGGATTGCGGAG+AGG 0.642415 6_3:+67064027 Msa0957130:three_prime_UTR
ATAACGTCTAATAAAGTGGG+AGG 0.648196 6_3:+67063918 Msa0957130:exon
CTTACGATGGAAGATCATAG+AGG 0.672078 6_3:-67063247 None:intergenic
AAGGTACAATCCAAGTTCAG+CGG 0.680563 6_3:+67064117 Msa0957130:three_prime_UTR
TGTGGGATGCATGATGCACA+AGG 0.687796 6_3:+67063182 Msa0957130:exon
ACGATGGAAGATCATAGAGG+AGG 0.692459 6_3:-67063244 None:intergenic
AGGGTGTGAAGTATGGATTG+CGG 0.742851 6_3:+67064022 Msa0957130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTTAAAAATGGAAAA+AGG - chr6_3:67063092-67063111 None:intergenic 15.0%
!! AAATATGTAATCTATGTTTA+CGG + chr6_3:67064197-67064216 Msa0957130:three_prime_UTR 15.0%
!! AAACATTTAAAAATGGAAAA+AGG - chr6_3:67063092-67063111 None:intergenic 15.0%
!! AAATATGTAATCTATGTTTA+CGG + chr6_3:67064197-67064216 Msa0957130:three_prime_UTR 15.0%
!!! GAGTTTGAAACATTTAAAAA+TGG - chr6_3:67063099-67063118 None:intergenic 20.0%
!!! TTAAGTTTTAACGTTGTTTA+TGG + chr6_3:67063122-67063141 Msa0957130:five_prime_UTR 20.0%
!!! AAAAACTGAGTTGATAAAAT+AGG - chr6_3:67063705-67063724 None:intergenic 20.0%
!! TTGCAGAAAAAATTACAAAA+AGG - chr6_3:67063991-67064010 None:intergenic 20.0%
!!! GAGTTTGAAACATTTAAAAA+TGG - chr6_3:67063099-67063118 None:intergenic 20.0%
!!! TTAAGTTTTAACGTTGTTTA+TGG + chr6_3:67063122-67063141 Msa0957130:five_prime_UTR 20.0%
!!! AAAAACTGAGTTGATAAAAT+AGG - chr6_3:67063705-67063724 None:intergenic 20.0%
!! TTGCAGAAAAAATTACAAAA+AGG - chr6_3:67063991-67064010 None:intergenic 20.0%
!!! GGTAGATATCAATTTGTTTT+TGG - chr6_3:67063071-67063090 None:intergenic 25.0%
! ATTATAACAAGAGCAAGAAT+TGG - chr6_3:67063283-67063302 None:intergenic 25.0%
!! TCTTGCTCTTGTTATAATTA+TGG + chr6_3:67063285-67063304 Msa0957130:intron 25.0%
! TTTGTATCGTATACAAAACA+AGG + chr6_3:67063330-67063349 Msa0957130:intron 25.0%
! ACATTACACTATTTAGTACA+AGG + chr6_3:67063541-67063560 Msa0957130:intron 25.0%
! TAAGATATTCAACAAACAAG+AGG + chr6_3:67063796-67063815 Msa0957130:CDS 25.0%
!!! TTGTAATTTTTTCTGCAAGA+AGG + chr6_3:67063993-67064012 Msa0957130:three_prime_UTR 25.0%
!!! GGTAGATATCAATTTGTTTT+TGG - chr6_3:67063071-67063090 None:intergenic 25.0%
! ATTATAACAAGAGCAAGAAT+TGG - chr6_3:67063283-67063302 None:intergenic 25.0%
!! TCTTGCTCTTGTTATAATTA+TGG + chr6_3:67063285-67063304 Msa0957130:intron 25.0%
! TTTGTATCGTATACAAAACA+AGG + chr6_3:67063330-67063349 Msa0957130:intron 25.0%
! ACATTACACTATTTAGTACA+AGG + chr6_3:67063541-67063560 Msa0957130:intron 25.0%
! TAAGATATTCAACAAACAAG+AGG + chr6_3:67063796-67063815 Msa0957130:CDS 25.0%
!!! TTGTAATTTTTTCTGCAAGA+AGG + chr6_3:67063993-67064012 Msa0957130:three_prime_UTR 25.0%
TATCGTATACAAAACAAGGT+TGG + chr6_3:67063334-67063353 Msa0957130:intron 30.0%
GTTTAGCGTATAGTCATTAA+TGG + chr6_3:67063356-67063375 Msa0957130:intron 30.0%
TGAAGAACTGCAGATTAAAA+TGG - chr6_3:67063411-67063430 None:intergenic 30.0%
TATTTGACAACACTAAATGG+AGG - chr6_3:67063467-67063486 None:intergenic 30.0%
! TGCTATTTGACAACACTAAA+TGG - chr6_3:67063470-67063489 None:intergenic 30.0%
TTTATCAGTGTTGTCAATTG+AGG - chr6_3:67063643-67063662 None:intergenic 30.0%
CATTATATTGTGAAGGATCA+AGG - chr6_3:67063674-67063693 None:intergenic 30.0%
TGATCCTTCACAATATAATG+TGG + chr6_3:67063674-67063693 Msa0957130:intron 30.0%
AATGCCACATTATATTGTGA+AGG - chr6_3:67063681-67063700 None:intergenic 30.0%
! TGAACTCTTTCCTAACTTTT+TGG + chr6_3:67063742-67063761 Msa0957130:intron 30.0%
AAGAAATGAGCCAAAAAGTT+AGG - chr6_3:67063755-67063774 None:intergenic 30.0%
ATATTCAACAAACAAGAGGT+GGG + chr6_3:67063800-67063819 Msa0957130:CDS 30.0%
TCCAATAACGTCTAATAAAG+TGG + chr6_3:67063914-67063933 Msa0957130:exon 30.0%
CCAATAACGTCTAATAAAGT+GGG + chr6_3:67063915-67063934 Msa0957130:exon 30.0%
TATGCATGAATGGCTAAAAA+AGG - chr6_3:67064098-67064117 None:intergenic 30.0%
!! TTTTTAGCCATTCATGCATA+AGG + chr6_3:67064098-67064117 Msa0957130:three_prime_UTR 30.0%
!!! TTTTTTTAGAATGTGAGCTG+TGG + chr6_3:67064228-67064247 Msa0957130:three_prime_UTR 30.0%
TATCGTATACAAAACAAGGT+TGG + chr6_3:67063334-67063353 Msa0957130:intron 30.0%
GTTTAGCGTATAGTCATTAA+TGG + chr6_3:67063356-67063375 Msa0957130:intron 30.0%
TGAAGAACTGCAGATTAAAA+TGG - chr6_3:67063411-67063430 None:intergenic 30.0%
TATTTGACAACACTAAATGG+AGG - chr6_3:67063467-67063486 None:intergenic 30.0%
! TGCTATTTGACAACACTAAA+TGG - chr6_3:67063470-67063489 None:intergenic 30.0%
TTTATCAGTGTTGTCAATTG+AGG - chr6_3:67063643-67063662 None:intergenic 30.0%
CATTATATTGTGAAGGATCA+AGG - chr6_3:67063674-67063693 None:intergenic 30.0%
TGATCCTTCACAATATAATG+TGG + chr6_3:67063674-67063693 Msa0957130:intron 30.0%
AATGCCACATTATATTGTGA+AGG - chr6_3:67063681-67063700 None:intergenic 30.0%
! TGAACTCTTTCCTAACTTTT+TGG + chr6_3:67063742-67063761 Msa0957130:intron 30.0%
AAGAAATGAGCCAAAAAGTT+AGG - chr6_3:67063755-67063774 None:intergenic 30.0%
ATATTCAACAAACAAGAGGT+GGG + chr6_3:67063800-67063819 Msa0957130:CDS 30.0%
TCCAATAACGTCTAATAAAG+TGG + chr6_3:67063914-67063933 Msa0957130:exon 30.0%
CCAATAACGTCTAATAAAGT+GGG + chr6_3:67063915-67063934 Msa0957130:exon 30.0%
TATGCATGAATGGCTAAAAA+AGG - chr6_3:67064098-67064117 None:intergenic 30.0%
!! TTTTTAGCCATTCATGCATA+AGG + chr6_3:67064098-67064117 Msa0957130:three_prime_UTR 30.0%
!!! TTTTTTTAGAATGTGAGCTG+TGG + chr6_3:67064228-67064247 Msa0957130:three_prime_UTR 30.0%
TGATGTTATGATCTGCTTGT+AGG + chr6_3:67063145-67063164 Msa0957130:five_prime_UTR 35.0%
GATGTTATGATCTGCTTGTA+GGG + chr6_3:67063146-67063165 Msa0957130:five_prime_UTR 35.0%
! TTGCAAGAGCATAGAAGTAT+GGG - chr6_3:67063212-67063231 None:intergenic 35.0%
! ATTGCAAGAGCATAGAAGTA+TGG - chr6_3:67063213-67063232 None:intergenic 35.0%
TGTTCTTTAATAGCAGCGAT+AGG + chr6_3:67063564-67063583 Msa0957130:intron 35.0%
GTTCTTTAATAGCAGCGATA+GGG + chr6_3:67063565-67063584 Msa0957130:intron 35.0%
GATATTCAACAAACAAGAGG+TGG + chr6_3:67063799-67063818 Msa0957130:CDS 35.0%
TTATTAGACGTTATTGGACG+TGG - chr6_3:67063912-67063931 None:intergenic 35.0%
CCCACTTTATTAGACGTTAT+TGG - chr6_3:67063918-67063937 None:intergenic 35.0%
ATAACGTCTAATAAAGTGGG+AGG + chr6_3:67063918-67063937 Msa0957130:exon 35.0%
TTTCTGCAAGAAGGTAATTC+AGG + chr6_3:67064002-67064021 Msa0957130:three_prime_UTR 35.0%
TTCTGCAAGAAGGTAATTCA+GGG + chr6_3:67064003-67064022 Msa0957130:three_prime_UTR 35.0%
GAGGAGAATAATTGCTAGAA+TGG + chr6_3:67064046-67064065 Msa0957130:three_prime_UTR 35.0%
CATGAATGGCTAAAAAAGGA+TGG - chr6_3:67064094-67064113 None:intergenic 35.0%
GATTGTACCTTATGCATGAA+TGG - chr6_3:67064108-67064127 None:intergenic 35.0%
TGATGTTATGATCTGCTTGT+AGG + chr6_3:67063145-67063164 Msa0957130:five_prime_UTR 35.0%
GATGTTATGATCTGCTTGTA+GGG + chr6_3:67063146-67063165 Msa0957130:five_prime_UTR 35.0%
! TTGCAAGAGCATAGAAGTAT+GGG - chr6_3:67063212-67063231 None:intergenic 35.0%
! ATTGCAAGAGCATAGAAGTA+TGG - chr6_3:67063213-67063232 None:intergenic 35.0%
TGTTCTTTAATAGCAGCGAT+AGG + chr6_3:67063564-67063583 Msa0957130:intron 35.0%
GTTCTTTAATAGCAGCGATA+GGG + chr6_3:67063565-67063584 Msa0957130:intron 35.0%
GATATTCAACAAACAAGAGG+TGG + chr6_3:67063799-67063818 Msa0957130:CDS 35.0%
TTATTAGACGTTATTGGACG+TGG - chr6_3:67063912-67063931 None:intergenic 35.0%
CCCACTTTATTAGACGTTAT+TGG - chr6_3:67063918-67063937 None:intergenic 35.0%
ATAACGTCTAATAAAGTGGG+AGG + chr6_3:67063918-67063937 Msa0957130:exon 35.0%
TTTCTGCAAGAAGGTAATTC+AGG + chr6_3:67064002-67064021 Msa0957130:three_prime_UTR 35.0%
TTCTGCAAGAAGGTAATTCA+GGG + chr6_3:67064003-67064022 Msa0957130:three_prime_UTR 35.0%
GAGGAGAATAATTGCTAGAA+TGG + chr6_3:67064046-67064065 Msa0957130:three_prime_UTR 35.0%
CATGAATGGCTAAAAAAGGA+TGG - chr6_3:67064094-67064113 None:intergenic 35.0%
GATTGTACCTTATGCATGAA+TGG - chr6_3:67064108-67064127 None:intergenic 35.0%
TAGGGTATAATCACCCTTTG+TGG + chr6_3:67063164-67063183 Msa0957130:five_prime_UTR 40.0%
AGGGTATAATCACCCTTTGT+GGG + chr6_3:67063165-67063184 Msa0957130:five_prime_UTR 40.0%
CTTACGATGGAAGATCATAG+AGG - chr6_3:67063250-67063269 None:intergenic 40.0%
GATCTTCCATCGTAAGTAGT+TGG + chr6_3:67063254-67063273 Msa0957130:intron 40.0%
TGGAAACCAACTACTTACGA+TGG - chr6_3:67063263-67063282 None:intergenic 40.0%
GTGTTGTCAAATAGCAGCTA+TGG + chr6_3:67063474-67063493 Msa0957130:intron 40.0%
! CGTGGACTATAGTAGTTTGT+TGG - chr6_3:67063618-67063637 None:intergenic 40.0%
AGTTAGGAAAGAGTTCACGA+CGG - chr6_3:67063739-67063758 None:intergenic 40.0%
TTGTTCAGATTTGCAGAGAG+AGG + chr6_3:67063773-67063792 Msa0957130:intron 40.0%
AGCATATTCTTCACTGGTGA+TGG + chr6_3:67063845-67063864 Msa0957130:CDS 40.0%
TCCAATTCCAAACTCTCACT+TGG - chr6_3:67063877-67063896 None:intergenic 40.0%
GTAATTCAGGGTGTGAAGTA+TGG + chr6_3:67064015-67064034 Msa0957130:three_prime_UTR 40.0%
AAGGTACAATCCAAGTTCAG+CGG + chr6_3:67064117-67064136 Msa0957130:three_prime_UTR 40.0%
! TAGAATGTGAGCTGTGGTTT+TGG + chr6_3:67064234-67064253 Msa0957130:three_prime_UTR 40.0%
TAGGGTATAATCACCCTTTG+TGG + chr6_3:67063164-67063183 Msa0957130:five_prime_UTR 40.0%
AGGGTATAATCACCCTTTGT+GGG + chr6_3:67063165-67063184 Msa0957130:five_prime_UTR 40.0%
CTTACGATGGAAGATCATAG+AGG - chr6_3:67063250-67063269 None:intergenic 40.0%
GATCTTCCATCGTAAGTAGT+TGG + chr6_3:67063254-67063273 Msa0957130:intron 40.0%
TGGAAACCAACTACTTACGA+TGG - chr6_3:67063263-67063282 None:intergenic 40.0%
GTGTTGTCAAATAGCAGCTA+TGG + chr6_3:67063474-67063493 Msa0957130:intron 40.0%
! CGTGGACTATAGTAGTTTGT+TGG - chr6_3:67063618-67063637 None:intergenic 40.0%
AGTTAGGAAAGAGTTCACGA+CGG - chr6_3:67063739-67063758 None:intergenic 40.0%
TTGTTCAGATTTGCAGAGAG+AGG + chr6_3:67063773-67063792 Msa0957130:intron 40.0%
AGCATATTCTTCACTGGTGA+TGG + chr6_3:67063845-67063864 Msa0957130:CDS 40.0%
TCCAATTCCAAACTCTCACT+TGG - chr6_3:67063877-67063896 None:intergenic 40.0%
GTAATTCAGGGTGTGAAGTA+TGG + chr6_3:67064015-67064034 Msa0957130:three_prime_UTR 40.0%
AAGGTACAATCCAAGTTCAG+CGG + chr6_3:67064117-67064136 Msa0957130:three_prime_UTR 40.0%
! TAGAATGTGAGCTGTGGTTT+TGG + chr6_3:67064234-67064253 Msa0957130:three_prime_UTR 40.0%
TGCATCATGCATCCCACAAA+GGG - chr6_3:67063180-67063199 None:intergenic 45.0%
ACGATGGAAGATCATAGAGG+AGG - chr6_3:67063247-67063266 None:intergenic 45.0%
GTGTTGTCAATTGAGGATCG+TGG - chr6_3:67063636-67063655 None:intergenic 45.0%
CCAGTGAAGAATATGCTACC+AGG - chr6_3:67063842-67063861 None:intergenic 45.0%
CCTGGTAGCATATTCTTCAC+TGG + chr6_3:67063839-67063858 Msa0957130:CDS 45.0%
!! TTCTTCACTGGTGATGGAAC+CGG + chr6_3:67063851-67063870 Msa0957130:CDS 45.0%
ATTCCAAACTCTCACTTGGC+CGG - chr6_3:67063873-67063892 None:intergenic 45.0%
! GCCAAGTGAGAGTTTGGAAT+TGG + chr6_3:67063873-67063892 Msa0957130:CDS 45.0%
TTGGAATTGGATACCCGAAC+CGG + chr6_3:67063886-67063905 Msa0957130:CDS 45.0%
! AGGGTGTGAAGTATGGATTG+CGG + chr6_3:67064022-67064041 Msa0957130:three_prime_UTR 45.0%
TGGAGAGCAGCAGTGAATTT+AGG - chr6_3:67064074-67064093 None:intergenic 45.0%
! TGGTGTTAAGCGAGTATCCT+TGG + chr6_3:67064254-67064273 Msa0957130:three_prime_UTR 45.0%
CTAAAGCAAGCTTAGTGCCA+AGG - chr6_3:67064274-67064293 None:intergenic 45.0%
! TGGCACTAAGCTTGCTTTAG+AGG + chr6_3:67064274-67064293 Msa0957130:three_prime_UTR 45.0%
! GGCACTAAGCTTGCTTTAGA+GGG + chr6_3:67064275-67064294 Msa0957130:three_prime_UTR 45.0%
TGCATCATGCATCCCACAAA+GGG - chr6_3:67063180-67063199 None:intergenic 45.0%
ACGATGGAAGATCATAGAGG+AGG - chr6_3:67063247-67063266 None:intergenic 45.0%
GTGTTGTCAATTGAGGATCG+TGG - chr6_3:67063636-67063655 None:intergenic 45.0%
CCAGTGAAGAATATGCTACC+AGG - chr6_3:67063842-67063861 None:intergenic 45.0%
CCTGGTAGCATATTCTTCAC+TGG + chr6_3:67063839-67063858 Msa0957130:CDS 45.0%
!! TTCTTCACTGGTGATGGAAC+CGG + chr6_3:67063851-67063870 Msa0957130:CDS 45.0%
ATTCCAAACTCTCACTTGGC+CGG - chr6_3:67063873-67063892 None:intergenic 45.0%
! GCCAAGTGAGAGTTTGGAAT+TGG + chr6_3:67063873-67063892 Msa0957130:CDS 45.0%
TTGGAATTGGATACCCGAAC+CGG + chr6_3:67063886-67063905 Msa0957130:CDS 45.0%
! AGGGTGTGAAGTATGGATTG+CGG + chr6_3:67064022-67064041 Msa0957130:three_prime_UTR 45.0%
TGGAGAGCAGCAGTGAATTT+AGG - chr6_3:67064074-67064093 None:intergenic 45.0%
! TGGTGTTAAGCGAGTATCCT+TGG + chr6_3:67064254-67064273 Msa0957130:three_prime_UTR 45.0%
CTAAAGCAAGCTTAGTGCCA+AGG - chr6_3:67064274-67064293 None:intergenic 45.0%
! TGGCACTAAGCTTGCTTTAG+AGG + chr6_3:67064274-67064293 Msa0957130:three_prime_UTR 45.0%
! GGCACTAAGCTTGCTTTAGA+GGG + chr6_3:67064275-67064294 Msa0957130:three_prime_UTR 45.0%
GTGCATCATGCATCCCACAA+AGG - chr6_3:67063181-67063200 None:intergenic 50.0%
TGTGGGATGCATGATGCACA+AGG + chr6_3:67063182-67063201 Msa0957130:exon 50.0%
AATAGCAGCGATAGGGTTGC+TGG + chr6_3:67063572-67063591 Msa0957130:intron 50.0%
TAGACGTTATTGGACGTGGC+CGG - chr6_3:67063908-67063927 None:intergenic 50.0%
! GTGAAGTATGGATTGCGGAG+AGG + chr6_3:67064027-67064046 Msa0957130:three_prime_UTR 50.0%
TAAATCTCGGCCGCTGAACT+TGG - chr6_3:67064130-67064149 None:intergenic 50.0%
CAGCCTGCTCGGTTAAATCT+CGG - chr6_3:67064143-67064162 None:intergenic 50.0%
! GGATTCGGGCTAGAACGAAA+AGG + chr6_3:67064174-67064193 Msa0957130:three_prime_UTR 50.0%
GTGCATCATGCATCCCACAA+AGG - chr6_3:67063181-67063200 None:intergenic 50.0%
TGTGGGATGCATGATGCACA+AGG + chr6_3:67063182-67063201 Msa0957130:exon 50.0%
AATAGCAGCGATAGGGTTGC+TGG + chr6_3:67063572-67063591 Msa0957130:intron 50.0%
TAGACGTTATTGGACGTGGC+CGG - chr6_3:67063908-67063927 None:intergenic 50.0%
! GTGAAGTATGGATTGCGGAG+AGG + chr6_3:67064027-67064046 Msa0957130:three_prime_UTR 50.0%
TAAATCTCGGCCGCTGAACT+TGG - chr6_3:67064130-67064149 None:intergenic 50.0%
CAGCCTGCTCGGTTAAATCT+CGG - chr6_3:67064143-67064162 None:intergenic 50.0%
! GGATTCGGGCTAGAACGAAA+AGG + chr6_3:67064174-67064193 Msa0957130:three_prime_UTR 50.0%
GGATGCATGATGCACAAGGC+AGG + chr6_3:67063186-67063205 Msa0957130:exon 55.0%
GAGGTGGGAGCAATTCAGAC+TGG + chr6_3:67063815-67063834 Msa0957130:CDS 55.0%
! GGAGCAATTCAGACTGGTCC+TGG + chr6_3:67063821-67063840 Msa0957130:CDS 55.0%
GAACCGGCCAAGTGAGAGTT+TGG + chr6_3:67063867-67063886 Msa0957130:CDS 55.0%
! TTATTGGACGTGGCCGGTTC+GGG - chr6_3:67063902-67063921 None:intergenic 55.0%
GTTATTGGACGTGGCCGGTT+CGG - chr6_3:67063903-67063922 None:intergenic 55.0%
! GCTGTACGCTGCAGTGGATT+CGG + chr6_3:67064159-67064178 Msa0957130:three_prime_UTR 55.0%
! CTGTACGCTGCAGTGGATTC+GGG + chr6_3:67064160-67064179 Msa0957130:three_prime_UTR 55.0%
GGATGCATGATGCACAAGGC+AGG + chr6_3:67063186-67063205 Msa0957130:exon 55.0%
GAGGTGGGAGCAATTCAGAC+TGG + chr6_3:67063815-67063834 Msa0957130:CDS 55.0%
! GGAGCAATTCAGACTGGTCC+TGG + chr6_3:67063821-67063840 Msa0957130:CDS 55.0%
GAACCGGCCAAGTGAGAGTT+TGG + chr6_3:67063867-67063886 Msa0957130:CDS 55.0%
! TTATTGGACGTGGCCGGTTC+GGG - chr6_3:67063902-67063921 None:intergenic 55.0%
GTTATTGGACGTGGCCGGTT+CGG - chr6_3:67063903-67063922 None:intergenic 55.0%
! GCTGTACGCTGCAGTGGATT+CGG + chr6_3:67064159-67064178 Msa0957130:three_prime_UTR 55.0%
! CTGTACGCTGCAGTGGATTC+GGG + chr6_3:67064160-67064179 Msa0957130:three_prime_UTR 55.0%
CGGCCGAGATTTAACCGAGC+AGG + chr6_3:67064137-67064156 Msa0957130:three_prime_UTR 60.0%
ACTGCAGCGTACAGCCTGCT+CGG - chr6_3:67064154-67064173 None:intergenic 60.0%
CGGCCGAGATTTAACCGAGC+AGG + chr6_3:67064137-67064156 Msa0957130:three_prime_UTR 60.0%
ACTGCAGCGTACAGCCTGCT+CGG - chr6_3:67064154-67064173 None:intergenic 60.0%
GAGCAGGCTGTACGCTGCAG+TGG + chr6_3:67064153-67064172 Msa0957130:three_prime_UTR 65.0%
GAGCAGGCTGTACGCTGCAG+TGG + chr6_3:67064153-67064172 Msa0957130:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 67063055 67064354 67063055 ID=Msa0957130;Name=Msa0957130
chr6_3 mRNA 67063055 67064354 67063055 ID=Msa0957130-mRNA-1;Parent=Msa0957130;Name=Msa0957130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133|1|1|1|1|1|2|426|74
chr6_3 exon 67063055 67063264 67063055 ID=Msa0957130-mRNA-1:exon:12451;Parent=Msa0957130-mRNA-1
chr6_3 exon 67063781 67064354 67063781 ID=Msa0957130-mRNA-1:exon:12452;Parent=Msa0957130-mRNA-1
chr6_3 five_prime_UTR 67063055 67063187 67063055 ID=Msa0957130-mRNA-1:five_prime_utr;Parent=Msa0957130-mRNA-1
chr6_3 CDS 67063188 67063264 67063188 ID=Msa0957130-mRNA-1:cds;Parent=Msa0957130-mRNA-1
chr6_3 CDS 67063781 67063928 67063781 ID=Msa0957130-mRNA-1:cds;Parent=Msa0957130-mRNA-1
chr6_3 three_prime_UTR 67063929 67064354 67063929 ID=Msa0957130-mRNA-1:three_prime_utr;Parent=Msa0957130-mRNA-1
Gene Sequence

>Msa0957130

ATGCATGATGCACAAGGCAGGCCCATACTTCTATGCTCTTGCAATGATAACATTGTCCTCCTCTATGATCTTCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACAAGAGGTGGGAGCAATTCAGACTGGTCCTGGTAGCATATTCTTCACTGGTGATGGAACCGGCCAAGTGAGAGTTTGGAATTGGATACCCGAACCGGCCACGTCCAATAACGTCTAA
Protein sequence

>Msa0957130

MHDAQGRPILLCSCNDNIVLLYDLPSFAERGKIFNKQEVGAIQTGPGSIFFTGDGTGQVRVWNWIPEPATSNNV*