AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510410 MtrunA17_Chr3g0116461 98.762 323 4 0 8 330 1 323 0.0 657
Msa0510410 MtrunA17_Chr8g0381911 39.209 278 147 7 47 304 21 296 1.62e-54 181
Msa0510410 MtrunA17_Chr2g0291931 34.868 152 90 5 89 234 74 222 2.00e-20 90.9
Msa0510410 MtrunA17_Chr7g0271811 30.542 203 125 6 88 289 74 261 5.56e-13 70.1
Msa0510410 MtrunA17_Chr4g0048231 32.609 138 92 1 189 326 93 229 1.71e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510410 AT3G48420.1 81.588 277 47 2 57 330 44 319 5.12e-160 450
Msa0510410 AT4G39970.1 38.431 255 140 6 65 304 42 294 1.05e-50 171
Msa0510410 AT5G45170.1 29.289 239 148 9 17 240 1 233 5.79e-18 84.3
Msa0510410 AT5G45170.2 29.289 239 148 9 17 240 1 233 6.27e-18 83.6
Msa0510410 AT1G56500.2 29.675 246 129 8 62 289 43 262 2.47e-13 71.2
Msa0510410 AT1G56500.1 32.843 204 119 7 88 289 75 262 2.90e-13 71.2
Msa0510410 AT4G21470.1 29.661 236 140 9 86 317 10 223 9.60e-12 65.9

Find 73 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGTGAATTGCTCAAAAT+TGG 0.190541 3_4:-59460320 Msa0510410:CDS
TAAAAGATCAATGTTTATAT+TGG 0.247070 3_4:-59458255 Msa0510410:three_prime_UTR
CCACGTCTCCTGCAAATATC+TGG 0.290444 3_4:+59459322 None:intergenic
GATCCTTCTTGTTGTGCTTA+AGG 0.294915 3_4:+59461029 None:intergenic
TGCAATAGTATCATGTTTAC+TGG 0.316202 3_4:-59459367 Msa0510410:CDS
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3_4:-59458399 Msa0510410:CDS
GCAACTCAACCTACGCCTTC+TGG 0.363138 3_4:+59460940 None:intergenic
TTGAAATGTGTGTGATGATT+TGG 0.365083 3_4:-59461169 Msa0510410:five_prime_UTR
AACATACAGGCTTGTCGATC+AGG 0.380787 3_4:-59459627 Msa0510410:intron
CAACAATGAAGCAGAGGAAA+TGG 0.387924 3_4:+59461093 None:intergenic
GCGAAAATCCAGATATTTGC+AGG 0.398864 3_4:-59459330 Msa0510410:CDS
GCGAAAGACAGAACTATTCA+TGG 0.402161 3_4:-59460107 Msa0510410:CDS
GATGCTGTATTTGACTTCAT+TGG 0.403312 3_4:-59458428 Msa0510410:CDS
TATACATACCGCCTTCTCAT+TGG 0.409078 3_4:+59459565 None:intergenic
GATGAAAATCTTACTGGATC+AGG 0.425148 3_4:+59459285 None:intergenic
AGAAAGAACTAGGCGTTACC+TGG 0.431412 3_4:-59460355 Msa0510410:CDS
TACTACTTATCTGCTTCCTA+TGG 0.453962 3_4:+59461193 None:intergenic
CTAGCAGCTGCTAAAGCAGC+TGG 0.460176 3_4:-59458729 Msa0510410:CDS
TTTATATTGGTTGTGTAAAG+AGG 0.460474 3_4:-59458242 Msa0510410:three_prime_UTR
GAGTTGCTCAGCCTCGGCTT+CGG 0.462076 3_4:-59460924 Msa0510410:CDS
AAGAGCTTTGACAGTGAAAG+AGG 0.462364 3_4:+59460982 None:intergenic
TGAGTTGTGCAGAAAGAACT+AGG 0.472615 3_4:-59460365 Msa0510410:intron
TAGGTTGAGTTGCTCAGCCT+CGG 0.485144 3_4:-59460930 Msa0510410:CDS
GCTTGCAGCTAGTATATAGA+TGG 0.488092 3_4:+59459100 None:intergenic
CTCTCGGTGTTGAACCTTCG+AGG 0.492187 3_4:-59459076 Msa0510410:intron
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3_4:+59458398 None:intergenic
ACCTGGGACGTGGAATTGTA+CGG 0.498073 3_4:-59460338 Msa0510410:CDS
TCACCGGTCGGTGCATTCGC+AGG 0.502591 3_4:+59460166 None:intergenic
GTAACCAACTTTGCAACACC+TGG 0.507072 3_4:+59460052 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3_4:-59458766 Msa0510410:intron
CCTTCTTGTTGTGCTTAAGG+AGG 0.524553 3_4:+59461032 None:intergenic
GTCGATCAGGCTTTAACTCA+AGG 0.530696 3_4:-59459614 Msa0510410:CDS
ACCGTACAATTCCACGTCCC+AGG 0.534371 3_4:+59460337 None:intergenic
TGACATATTGCTTCTCAAGA+AGG 0.536995 3_4:+59458363 None:intergenic
TTTCTTTCTTGTTCACCGGT+CGG 0.536996 3_4:+59460154 None:intergenic
GTGGTCGAGGACAGCGCGAT+AGG 0.538780 3_4:-59458753 Msa0510410:CDS
ATACTAGCTGCAAGCACTCT+CGG 0.540283 3_4:-59459092 Msa0510410:CDS
TTATCTGCTTCCTATGGAGT+GGG 0.543330 3_4:+59461199 None:intergenic
AAACTGTTGCCTCTTCGCCC+AGG 0.546839 3_4:-59460070 Msa0510410:CDS
TTGCAGCACTTCCAATGAGA+AGG 0.567771 3_4:-59459576 Msa0510410:CDS
GGTGAATTGCTCAAAATTGG+AGG 0.570888 3_4:-59460317 Msa0510410:CDS
GAATTGCTCAAAATTGGAGG+TGG 0.571113 3_4:-59460314 Msa0510410:CDS
TGGCCTGCGAATGCACCGAC+CGG 0.571608 3_4:-59460169 Msa0510410:CDS
ACAGCGTACTTTAACAAGAC+AGG 0.572132 3_4:-59460193 Msa0510410:CDS
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3_4:-59458701 Msa0510410:intron
AATTAACGGTCCCACTCCAT+AGG 0.581075 3_4:-59461209 None:intergenic
CCAGATATTTGCAGGAGACG+TGG 0.583159 3_4:-59459322 Msa0510410:CDS
CTTATCTGCTTCCTATGGAG+TGG 0.585333 3_4:+59461198 None:intergenic
TAGCAGCTGCTAAAGCAGCT+GGG 0.585713 3_4:-59458728 Msa0510410:CDS
CCTCCTTAAGCACAACAAGA+AGG 0.586129 3_4:-59461032 Msa0510410:CDS
AGCATGAGGCACCTCTTGGA+AGG 0.594170 3_4:+59460808 None:intergenic
GCAATAGTATCATGTTTACT+GGG 0.601679 3_4:-59459366 Msa0510410:CDS
TTTGCAACACCTGGGCGAAG+AGG 0.605369 3_4:+59460061 None:intergenic
CGTAGAAGATGCCGAAGCCG+AGG 0.606005 3_4:+59460913 None:intergenic
GATGCTATTTGTTGATGCCA+TGG 0.609340 3_4:+59461120 None:intergenic
TGTTATTTACAGATGTGTCG+TGG 0.617481 3_4:-59458772 Msa0510410:intron
CGTACTTTAACAAGACAGGC+TGG 0.620399 3_4:-59460189 Msa0510410:CDS
ACTAGGCGTTACCTGGGACG+TGG 0.621198 3_4:-59460348 Msa0510410:CDS
GTGTGATGATTTGGTATGCA+AGG 0.622264 3_4:-59461160 Msa0510410:exon
AAATTGGAGGTGGAAAAGAA+AGG 0.623022 3_4:-59460304 Msa0510410:intron
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3_4:-59458414 Msa0510410:CDS
TCGATTCAACAATGAAGCAG+AGG 0.624993 3_4:+59461087 None:intergenic
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3_4:+59458401 None:intergenic
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3_4:-59458702 Msa0510410:CDS
TTTCAATGATACCTTCCAAG+AGG 0.634885 3_4:-59460819 Msa0510410:intron
GAAAGAACTAGGCGTTACCT+GGG 0.638091 3_4:-59460354 Msa0510410:CDS
TAACCAACTTTGCAACACCT+GGG 0.652911 3_4:+59460053 None:intergenic
CAGCACTTCCAATGAGAAGG+CGG 0.658354 3_4:-59459573 Msa0510410:intron
TATCAACTTCAACAACCAGA+AGG 0.668672 3_4:-59460955 Msa0510410:CDS
CTTCAACAACCAGAAGGCGT+AGG 0.675480 3_4:-59460949 Msa0510410:CDS
TAGCAATCTGTAAAGCGATG+AGG 0.691615 3_4:-59458338 Msa0510410:three_prime_UTR
AGGTATCATTGAAAGAAATG+CGG 0.709896 3_4:+59460828 None:intergenic
ACTATTATGAGATACCTCGA+AGG 0.710353 3_4:+59459062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAAAATGTTTTTTTTTTT+TGG + chr3_4:59458832-59458851 None:intergenic 10.0%
!! ATGTAAATAAATTCATTTAT+TGG - chr3_4:59459400-59459419 Msa0510410:intron 10.0%
!! TGTAAATAAATTCATTTATT+GGG - chr3_4:59459401-59459420 Msa0510410:intron 10.0%
!! AACATTATAAATAATGAGTA+TGG + chr3_4:59459369-59459388 None:intergenic 15.0%
!!! TTTTGAATGTTAACTTAAAT+TGG + chr3_4:59459509-59459528 None:intergenic 15.0%
!!! AAATAATATTAGCCTATTAA+GGG + chr3_4:59459593-59459612 None:intergenic 15.0%
!!! TAAATAATATTAGCCTATTA+AGG + chr3_4:59459594-59459613 None:intergenic 15.0%
!! ATTCAATCATATAGTAAAAA+AGG + chr3_4:59460201-59460220 None:intergenic 15.0%
!! ATTTCATTCTTATATGTAAA+TGG - chr3_4:59460831-59460850 Msa0510410:CDS 15.0%
!! TTAAGAAAAAGTCAAATAAA+AGG + chr3_4:59460876-59460895 None:intergenic 15.0%
!! TAAAAGATCAATGTTTATAT+TGG - chr3_4:59461119-59461138 Msa0510410:CDS 15.0%
!! AAGATACACATAATAAGATA+AGG + chr3_4:59459720-59459739 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG + chr3_4:59459851-59459870 None:intergenic 20.0%
!!! AGGAATTGATTCTATAAAAT+GGG + chr3_4:59459887-59459906 None:intergenic 20.0%
!!! TAGGAATTGATTCTATAAAA+TGG + chr3_4:59459888-59459907 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG - chr3_4:59459926-59459945 Msa0510410:intron 20.0%
!!! TGCTAATTTTTTAGATTTTC+AGG - chr3_4:59460119-59460138 Msa0510410:CDS 20.0%
!! TACAACATTTGATTATATGA+TGG + chr3_4:59460452-59460471 None:intergenic 20.0%
!!! AATAACTTGCACTAAAATTT+TGG + chr3_4:59460520-59460539 None:intergenic 20.0%
!! AAAAACAAATAACTAGTAAC+TGG + chr3_4:59460544-59460563 None:intergenic 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG - chr3_4:59460552-59460571 Msa0510410:intron 20.0%
!! ATTCTTATATGTAAATGGTT+TGG - chr3_4:59460836-59460855 Msa0510410:CDS 20.0%
!!! TTTTAATCATTGGCTTAAAA+GGG + chr3_4:59461104-59461123 None:intergenic 20.0%
!!! AACATTGATCTTTTAATCAT+TGG + chr3_4:59461114-59461133 None:intergenic 20.0%
!!! CTTATAAGTGTTGTTGTTTT+TGG + chr3_4:59458322-59458341 None:intergenic 25.0%
!! AACAAAGATTAAAAAGCATG+AGG + chr3_4:59458583-59458602 None:intergenic 25.0%
!!! AACTAGTTTGTTGTTTTCAT+CGG + chr3_4:59458773-59458792 None:intergenic 25.0%
! ATCCTATAACATCTTTATAC+TGG - chr3_4:59458876-59458895 Msa0510410:intron 25.0%
! ACAATTGATGTGTTTATTGT+AGG - chr3_4:59459155-59459174 Msa0510410:intron 25.0%
! TATCTTTCTTTCAAACATAC+AGG - chr3_4:59459734-59459753 Msa0510410:intron 25.0%
!! AAATGAATTTTTCCAACTAC+AGG - chr3_4:59459852-59459871 Msa0510410:intron 25.0%
!! AATGAATTTTTCCAACTACA+GGG - chr3_4:59459853-59459872 Msa0510410:intron 25.0%
! ATTTATTTGTATTCCATCTC+AGG - chr3_4:59459955-59459974 Msa0510410:intron 25.0%
! TATACACTACAGTTAAACAA+TGG - chr3_4:59460173-59460192 Msa0510410:CDS 25.0%
! ATATGATTGAATGTTCAGTA+TGG - chr3_4:59460209-59460228 Msa0510410:intron 25.0%
! CTTTAAATTACACTAGACAT+TGG - chr3_4:59460387-59460406 Msa0510410:intron 25.0%
!!! GATTATATGATGGATACATT+TGG + chr3_4:59460442-59460461 None:intergenic 25.0%
!!! TTTTTTTCTTTCTTTCCGAT+AGG - chr3_4:59460732-59460751 Msa0510410:intron 25.0%
! TTACTATCATCTTTACCTAT+CGG + chr3_4:59460750-59460769 None:intergenic 25.0%
!!! TTGTGGTTATGTTAGTTTTT+GGG - chr3_4:59460771-59460790 Msa0510410:intron 25.0%
!!! CTTTTAATCATTGGCTTAAA+AGG + chr3_4:59461105-59461124 None:intergenic 25.0%
!! TTTATATTGGTTGTGTAAAG+AGG - chr3_4:59461132-59461151 Msa0510410:CDS 25.0%
TTGAAATGTGTGTGATGATT+TGG - chr3_4:59458205-59458224 Msa0510410:three_prime_UTR 30.0%
!!! CATCTTTTTCAGTATCTACA+AGG + chr3_4:59458522-59458541 None:intergenic 30.0%
CTTGTAGATACTGAAAAAGA+TGG - chr3_4:59458520-59458539 Msa0510410:intron 30.0%
AGGTATCATTGAAAGAAATG+CGG + chr3_4:59458549-59458568 None:intergenic 30.0%
! AGAATCGTTGATTACATTGA+GGG - chr3_4:59458728-59458747 Msa0510410:CDS 30.0%
AGCCAGTATAAAGATGTTAT+AGG + chr3_4:59458881-59458900 None:intergenic 30.0%
AACACTAATAATCGTTTCCA+AGG + chr3_4:59458921-59458940 None:intergenic 30.0%
TGGAAACGATTATTAGTGTT+TGG - chr3_4:59458921-59458940 Msa0510410:intron 30.0%
AAACGATTATTAGTGTTTGG+TGG - chr3_4:59458924-59458943 Msa0510410:intron 30.0%
!! ACACACTTGTTATGGTTAAA+AGG + chr3_4:59458982-59459001 None:intergenic 30.0%
! ATCTTTTCTTTCTTGTTCAC+CGG + chr3_4:59459227-59459246 None:intergenic 30.0%
! AATTTAGTTTCGAAACAGCT+AGG - chr3_4:59459468-59459487 Msa0510410:intron 30.0%
TTAATTACCTGCTAAGTAGT+TGG - chr3_4:59459547-59459566 Msa0510410:intron 30.0%
TTATAAACCAACTACTTAGC+AGG + chr3_4:59459557-59459576 None:intergenic 30.0%
! AGTAGTTGGTTTATAACATG+TGG - chr3_4:59459561-59459580 Msa0510410:intron 30.0%
ATGTGGAAATATCCCTTAAT+AGG - chr3_4:59459578-59459597 Msa0510410:CDS 30.0%
!!! AGAGCTGTTTCTTTTATATC+AGG - chr3_4:59459678-59459697 Msa0510410:intron 30.0%
AGTACACACAAGTAACTAAT+AGG + chr3_4:59459907-59459926 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG - chr3_4:59460007-59460026 Msa0510410:intron 30.0%
GCAATAGTATCATGTTTACT+GGG - chr3_4:59460008-59460027 Msa0510410:intron 30.0%
TGCAATGATGAAAATCTTAC+TGG + chr3_4:59460098-59460117 None:intergenic 30.0%
TAGTACTCCATATACTAGTT+AGG + chr3_4:59460342-59460361 None:intergenic 30.0%
CTAGACATTGGAAAAGTTAA+TGG - chr3_4:59460399-59460418 Msa0510410:intron 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr3_4:59460672-59460691 Msa0510410:intron 30.0%
GTAAAGATGATAGTAAGTTG+TGG - chr3_4:59460754-59460773 Msa0510410:intron 30.0%
!!! GTTGTGGTTATGTTAGTTTT+TGG - chr3_4:59460770-59460789 Msa0510410:intron 30.0%
TAAGAATGAAATCACATCGA+AGG + chr3_4:59460823-59460842 None:intergenic 30.0%
! CTTATATGTAAATGGTTTGG+TGG - chr3_4:59460839-59460858 Msa0510410:CDS 30.0%
TAATCTCAAATGCATTATGC+AGG - chr3_4:59460893-59460912 Msa0510410:CDS 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG - chr3_4:59460985-59461004 Msa0510410:CDS 30.0%
!!! TCAATTTCTCGTTAGTTTTC+AGG - chr3_4:59461074-59461093 Msa0510410:CDS 30.0%
TACTACTTATCTGCTTCCTA+TGG + chr3_4:59458184-59458203 None:intergenic 35.0%
TGGTATGCAAGGAAAAACTA+AGG - chr3_4:59458225-59458244 Msa0510410:three_prime_UTR 35.0%
TATCAACTTCAACAACCAGA+AGG - chr3_4:59458419-59458438 Msa0510410:CDS 35.0%
TTTCAATGATACCTTCCAAG+AGG - chr3_4:59458555-59458574 Msa0510410:intron 35.0%
! GAGAATCGTTGATTACATTG+AGG - chr3_4:59458727-59458746 Msa0510410:CDS 35.0%
! AACAACAGACACACTTGTTA+TGG + chr3_4:59458990-59459009 None:intergenic 35.0%
TACGGTGAATTGCTCAAAAT+TGG - chr3_4:59459054-59459073 Msa0510410:intron 35.0%
AAATTGGAGGTGGAAAAGAA+AGG - chr3_4:59459070-59459089 Msa0510410:intron 35.0%
! ATTTATTGGGTGTCACCTAA+TGG - chr3_4:59459414-59459433 Msa0510410:intron 35.0%
AATCGAAAACTCAAGCCATT+AGG + chr3_4:59459432-59459451 None:intergenic 35.0%
TTTCCAACTACAGGGAAAAA+CGG - chr3_4:59459861-59459880 Msa0510410:intron 35.0%
CTGAAATCAACTCATGACTT+AGG + chr3_4:59459982-59460001 None:intergenic 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG - chr3_4:59459980-59459999 Msa0510410:intron 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG + chr3_4:59460082-59460101 None:intergenic 35.0%
GATGAAAATCTTACTGGATC+AGG + chr3_4:59460092-59460111 None:intergenic 35.0%
TCAGTATGGTATGATCTATG+TGG - chr3_4:59460223-59460242 Msa0510410:intron 35.0%
ACTATTATGAGATACCTCGA+AGG + chr3_4:59460315-59460334 None:intergenic 35.0%
AGTCATGCCTAACTAGTATA+TGG - chr3_4:59460332-59460351 Msa0510410:CDS 35.0%
!! CAATTCTAAAGTTGGTGGAT+AGG + chr3_4:59460480-59460499 None:intergenic 35.0%
!! CCATACAATTCTAAAGTTGG+TGG + chr3_4:59460485-59460504 None:intergenic 35.0%
!! CCACCAACTTTAGAATTGTA+TGG - chr3_4:59460482-59460501 Msa0510410:intron 35.0%
!! ACGCCATACAATTCTAAAGT+TGG + chr3_4:59460488-59460507 None:intergenic 35.0%
! TGTTATTTACAGATGTGTCG+TGG - chr3_4:59460602-59460621 Msa0510410:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr3_4:59460673-59460692 Msa0510410:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG - chr3_4:59460946-59460965 Msa0510410:CDS 35.0%
TGACATATTGCTTCTCAAGA+AGG + chr3_4:59461014-59461033 None:intergenic 35.0%
TTATCTGCTTCCTATGGAGT+GGG + chr3_4:59458178-59458197 None:intergenic 40.0%
!! GTGTGATGATTTGGTATGCA+AGG - chr3_4:59458214-59458233 Msa0510410:three_prime_UTR 40.0%
GCAAGGAAAAACTAAGGCAA+TGG - chr3_4:59458231-59458250 Msa0510410:three_prime_UTR 40.0%
AAAAACTAAGGCAATGGCCA+TGG - chr3_4:59458237-59458256 Msa0510410:three_prime_UTR 40.0%
! GATGCTATTTGTTGATGCCA+TGG + chr3_4:59458257-59458276 None:intergenic 40.0%
CAACAATGAAGCAGAGGAAA+TGG + chr3_4:59458284-59458303 None:intergenic 40.0%
TCGATTCAACAATGAAGCAG+AGG + chr3_4:59458290-59458309 None:intergenic 40.0%
! GATCCTTCTTGTTGTGCTTA+AGG + chr3_4:59458348-59458367 None:intergenic 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG + chr3_4:59458395-59458414 None:intergenic 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG + chr3_4:59458490-59458509 None:intergenic 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG + chr3_4:59458491-59458510 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG - chr3_4:59458493-59458512 Msa0510410:intron 40.0%
TGAGTTGTGCAGAAAGAACT+AGG - chr3_4:59459009-59459028 Msa0510410:intron 40.0%
GGTGAATTGCTCAAAATTGG+AGG - chr3_4:59459057-59459076 Msa0510410:intron 40.0%
GAATTGCTCAAAATTGGAGG+TGG - chr3_4:59459060-59459079 Msa0510410:intron 40.0%
ACAGCGTACTTTAACAAGAC+AGG - chr3_4:59459181-59459200 Msa0510410:intron 40.0%
TTTCTTTCTTGTTCACCGGT+CGG + chr3_4:59459223-59459242 None:intergenic 40.0%
GCGAAAGACAGAACTATTCA+TGG - chr3_4:59459267-59459286 Msa0510410:intron 40.0%
TAACCAACTTTGCAACACCT+GGG + chr3_4:59459324-59459343 None:intergenic 40.0%
TATACATACCGCCTTCTCAT+TGG + chr3_4:59459812-59459831 None:intergenic 40.0%
GCGAAAATCCAGATATTTGC+AGG - chr3_4:59460044-59460063 Msa0510410:intron 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG + chr3_4:59460081-59460100 None:intergenic 40.0%
TGTGTTATGCTCTTTGTGAC+AGG - chr3_4:59460251-59460270 Msa0510410:intron 40.0%
GCTTGCAGCTAGTATATAGA+TGG + chr3_4:59460277-59460296 None:intergenic 40.0%
AAATCAAATCTCTCCTCAGG+AGG + chr3_4:59460976-59460995 None:intergenic 40.0%
TCCTGAGGAGAGATTTGATT+TGG - chr3_4:59460975-59460994 Msa0510410:CDS 40.0%
TAGCAATCTGTAAAGCGATG+AGG - chr3_4:59461036-59461055 Msa0510410:CDS 40.0%
! AGCGATGAGGATTTTGTATC+AGG - chr3_4:59461049-59461068 Msa0510410:CDS 40.0%
! GCGATGAGGATTTTGTATCA+GGG - chr3_4:59461050-59461069 Msa0510410:CDS 40.0%
CTTATCTGCTTCCTATGGAG+TGG + chr3_4:59458179-59458198 None:intergenic 45.0%
! CCTTCTTGTTGTGCTTAAGG+AGG + chr3_4:59458345-59458364 None:intergenic 45.0%
CCTCCTTAAGCACAACAAGA+AGG - chr3_4:59458342-59458361 Msa0510410:exon 45.0%
! AAAAAGCATGAGGCACCTCT+TGG + chr3_4:59458573-59458592 None:intergenic 45.0%
AGAAAGAACTAGGCGTTACC+TGG - chr3_4:59459019-59459038 Msa0510410:intron 45.0%
GAAAGAACTAGGCGTTACCT+GGG - chr3_4:59459020-59459039 Msa0510410:intron 45.0%
CGTACTTTAACAAGACAGGC+TGG - chr3_4:59459185-59459204 Msa0510410:intron 45.0%
GTAACCAACTTTGCAACACC+TGG + chr3_4:59459325-59459344 None:intergenic 45.0%
AACATACAGGCTTGTCGATC+AGG - chr3_4:59459747-59459766 Msa0510410:intron 45.0%
! GTCGATCAGGCTTTAACTCA+AGG - chr3_4:59459760-59459779 Msa0510410:intron 45.0%
TTGCAGCACTTCCAATGAGA+AGG - chr3_4:59459798-59459817 Msa0510410:intron 45.0%
TCATGACTTAGGTCCTGAGA+TGG + chr3_4:59459971-59459990 None:intergenic 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG + chr3_4:59460080-59460099 None:intergenic 45.0%
ATACTAGCTGCAAGCACTCT+CGG - chr3_4:59460282-59460301 Msa0510410:intron 45.0%
GCCAAATCAAATCTCTCCTC+AGG + chr3_4:59460979-59460998 None:intergenic 45.0%
! CTTCAACAACCAGAAGGCGT+AGG - chr3_4:59458425-59458444 Msa0510410:CDS 50.0%
! TAGGTTGAGTTGCTCAGCCT+CGG - chr3_4:59458444-59458463 Msa0510410:CDS 50.0%
ACCTGGGACGTGGAATTGTA+CGG - chr3_4:59459036-59459055 Msa0510410:intron 50.0%
CAGCACTTCCAATGAGAAGG+CGG - chr3_4:59459801-59459820 Msa0510410:intron 50.0%
CCACGTCTCCTGCAAATATC+TGG + chr3_4:59460055-59460074 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG - chr3_4:59460052-59460071 Msa0510410:intron 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr3_4:59460608-59460627 Msa0510410:intron 50.0%
TAGCAGCTGCTAAAGCAGCT+GGG - chr3_4:59460646-59460665 Msa0510410:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr3_4:59460960-59460979 Msa0510410:CDS 50.0%
GCAACTCAACCTACGCCTTC+TGG + chr3_4:59458437-59458456 None:intergenic 55.0%
! AGCATGAGGCACCTCTTGGA+AGG + chr3_4:59458569-59458588 None:intergenic 55.0%
!! TACTGGCTCAACCACCAGAG+CGG - chr3_4:59458893-59458912 Msa0510410:intron 55.0%
ACCGTACAATTCCACGTCCC+AGG + chr3_4:59459040-59459059 None:intergenic 55.0%
AAACTGTTGCCTCTTCGCCC+AGG - chr3_4:59459304-59459323 Msa0510410:CDS 55.0%
TTTGCAACACCTGGGCGAAG+AGG + chr3_4:59459316-59459335 None:intergenic 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG - chr3_4:59459318-59459337 Msa0510410:CDS 55.0%
!!! GGGCCGTTTTTCCCTGTAGT+TGG + chr3_4:59459867-59459886 None:intergenic 55.0%
! TGGATTTTCGCTGCTCGCTC+AGG + chr3_4:59460035-59460054 None:intergenic 55.0%
!! CTCTCGGTGTTGAACCTTCG+AGG - chr3_4:59460298-59460317 Msa0510410:intron 55.0%
CTAGCAGCTGCTAAAGCAGC+TGG - chr3_4:59460645-59460664 Msa0510410:intron 55.0%
GAGTTGCTCAGCCTCGGCTT+CGG - chr3_4:59458450-59458469 Msa0510410:CDS 60.0%
CGTAGAAGATGCCGAAGCCG+AGG + chr3_4:59458464-59458483 None:intergenic 60.0%
ACTAGGCGTTACCTGGGACG+TGG - chr3_4:59459026-59459045 Msa0510410:intron 60.0%
!! TTTCCAAGGCGCCGCTCTGG+TGG + chr3_4:59458907-59458926 None:intergenic 65.0%
!! TCGTTTCCAAGGCGCCGCTC+TGG + chr3_4:59458910-59458929 None:intergenic 65.0%
! TGGCCTGCGAATGCACCGAC+CGG - chr3_4:59459205-59459224 Msa0510410:intron 65.0%
TCACCGGTCGGTGCATTCGC+AGG + chr3_4:59459211-59459230 None:intergenic 65.0%
GTGGTCGAGGACAGCGCGAT+AGG - chr3_4:59460621-59460640 Msa0510410:intron 65.0%
CAACCACCAGAGCGGCGCCT+TGG - chr3_4:59458901-59458920 Msa0510410:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 59458172 59461224 59458172 ID=Msa0510410;Name=Msa0510410
chr3_4 mRNA 59458172 59461224 59458172 ID=Msa0510410-mRNA-1;Parent=Msa0510410;Name=Msa0510410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=57|1|1|1|1|1|8|186|330
chr3_4 exon 59458172 59458481 59458172 ID=Msa0510410-mRNA-1:exon:13953;Parent=Msa0510410-mRNA-1
chr3_4 exon 59458702 59458782 59458702 ID=Msa0510410-mRNA-1:exon:13952;Parent=Msa0510410-mRNA-1
chr3_4 exon 59459077 59459123 59459077 ID=Msa0510410-mRNA-1:exon:13951;Parent=Msa0510410-mRNA-1
chr3_4 exon 59459299 59459394 59459299 ID=Msa0510410-mRNA-1:exon:13950;Parent=Msa0510410-mRNA-1
chr3_4 exon 59459574 59459640 59459574 ID=Msa0510410-mRNA-1:exon:13949;Parent=Msa0510410-mRNA-1
chr3_4 exon 59460061 59460219 59460061 ID=Msa0510410-mRNA-1:exon:13948;Parent=Msa0510410-mRNA-1
chr3_4 exon 59460305 59460375 59460305 ID=Msa0510410-mRNA-1:exon:13947;Parent=Msa0510410-mRNA-1
chr3_4 exon 59460820 59461224 59460820 ID=Msa0510410-mRNA-1:exon:13946;Parent=Msa0510410-mRNA-1
chr3_4 five_prime_UTR 59461168 59461224 59461168 ID=Msa0510410-mRNA-1:five_prime_utr;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59460820 59461167 59460820 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59460305 59460375 59460305 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59460061 59460219 59460061 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59459574 59459640 59459574 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59459299 59459394 59459299 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59459077 59459123 59459077 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59458702 59458782 59458702 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 CDS 59458358 59458481 59458358 ID=Msa0510410-mRNA-1:cds;Parent=Msa0510410-mRNA-1
chr3_4 three_prime_UTR 59458172 59458357 59458172 ID=Msa0510410-mRNA-1:three_prime_utr;Parent=Msa0510410-mRNA-1
Gene Sequence

>Msa0510410

ATGCAAGGAAAAACTAAGGCAATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAACCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATGTTTACTGGGACCTGAGCGAGCAGCGAAAATCCAGATATTTGCAGGAGACGTGGTTCCCCGAAAAAAGCCTGATCCAGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGATGTGTCGTGGTCGAGGACAGCGCGATAGGTCTAGCAGCTGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>Msa0510410

MQGKTKAMAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTTRRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSCLLGPERAAKIQIFAGDVVPRKKPDPAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*