Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0899900 | 0.821760 | 3.401156e-53 | -8.615850e-47 |
| Msa0096510 | Msa0899900 | 0.817322 | 3.501264e-52 | -8.615850e-47 |
| Msa0607440 | Msa0899900 | 0.805284 | 1.437721e-49 | -8.615850e-47 |
| Msa0635350 | Msa0899900 | 0.819294 | 1.252697e-52 | -8.615850e-47 |
| Msa0646730 | Msa0899900 | 0.802211 | 6.248131e-49 | -8.615850e-47 |
| Msa0672350 | Msa0899900 | 0.814873 | 1.234239e-51 | -8.615850e-47 |
| Msa0686300 | Msa0899900 | 0.801293 | 9.642003e-49 | -8.615850e-47 |
| Msa0840630 | Msa0899900 | 0.810386 | 1.182972e-50 | -8.615850e-47 |
| Msa0139920 | Msa0899900 | 0.800362 | 1.493156e-48 | -8.615850e-47 |
| Msa0156780 | Msa0899900 | 0.803413 | 3.528434e-49 | -8.615850e-47 |
| Msa0177570 | Msa0899900 | 0.813183 | 2.912365e-51 | -8.615850e-47 |
| Msa0195670 | Msa0899900 | 0.804368 | 2.234427e-49 | -8.615850e-47 |
| Msa0206600 | Msa0899900 | 0.814328 | 1.629299e-51 | -8.615850e-47 |
| Msa0372250 | Msa0899900 | 0.828582 | 8.299948e-55 | -8.615850e-47 |
| Msa0469270 | Msa0899900 | 0.800739 | 1.251138e-48 | -8.615850e-47 |
| Msa0317630 | Msa0899900 | 0.801132 | 1.040013e-48 | -8.615850e-47 |
| Msa0321230 | Msa0899900 | 0.800502 | 1.398527e-48 | -8.615850e-47 |
| Msa0348410 | Msa0899900 | 0.806862 | 6.693828e-50 | -8.615850e-47 |
| Msa0358720 | Msa0899900 | 0.809457 | 1.874671e-50 | -8.615850e-47 |
| Msa0497060 | Msa0899900 | 0.802975 | 4.345870e-49 | -8.615850e-47 |
| Msa0500510 | Msa0899900 | 0.819180 | 1.329604e-52 | -8.615850e-47 |
| Msa0510410 | Msa0899900 | 0.803092 | 4.111575e-49 | -8.615850e-47 |
| Msa0568810 | Msa0899900 | 0.802103 | 6.574428e-49 | -8.615850e-47 |
| Msa0570310 | Msa0899900 | 0.802435 | 5.617277e-49 | -8.615850e-47 |
| Msa0570490 | Msa0899900 | 0.820293 | 7.403392e-53 | -8.615850e-47 |
| Msa0589540 | Msa0899900 | 0.803099 | 4.097280e-49 | -8.615850e-47 |
| Msa0595160 | Msa0899900 | 0.800674 | 1.290236e-48 | -8.615850e-47 |
| Msa0595780 | Msa0899900 | 0.814166 | 1.769158e-51 | -8.615850e-47 |
| Msa0876030 | Msa0899900 | 0.803286 | 3.748579e-49 | -8.615850e-47 |
| Msa0883430 | Msa0899900 | 0.801156 | 1.028396e-48 | -8.615850e-47 |
| Msa0883690 | Msa0899900 | 0.805165 | 1.522412e-49 | -8.615850e-47 |
| Msa0899900 | Msa0957130 | 0.804821 | 1.797367e-49 | -8.615850e-47 |
| Msa0899900 | Msa0964570 | 0.806994 | 6.275634e-50 | -8.615850e-47 |
| Msa0899900 | Msa1016110 | 0.839809 | 1.268939e-57 | -8.615850e-47 |
| Msa0899900 | Msa1028720 | 0.828517 | 8.601616e-55 | -8.615850e-47 |
| Msa0899900 | Msa1028780 | 0.801788 | 7.633633e-49 | -8.615850e-47 |
| Msa0899900 | Msa1121580 | 0.804281 | 2.328951e-49 | -8.615850e-47 |
| Msa0899900 | Msa1156270 | 0.828069 | 1.103562e-54 | -8.615850e-47 |
| Msa0899900 | Msa1161520 | 0.820055 | 8.395929e-53 | -8.615850e-47 |
| Msa0899900 | Msa1203840 | 0.807384 | 5.190705e-50 | -8.615850e-47 |
| Msa0899900 | Msa1289340 | 0.809641 | 1.711843e-50 | -8.615850e-47 |
| Msa0899900 | Msa1356730 | 0.803889 | 2.810666e-49 | -8.615850e-47 |
| Msa0899900 | Msa1431240 | 0.822465 | 2.335174e-53 | -8.615850e-47 |
| Msa0899900 | Msa1435820 | 0.800074 | 1.709275e-48 | -8.615850e-47 |
| Msa0899900 | Msa1450420 | 0.801596 | 8.356599e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCCTTTGCCTAGACTTT+AGG | 0.335492 | 6_1:+95324896 | Msa0899900:CDS |
| CCAATTGTTGAGCTATTCAT+TGG | 0.390337 | 6_1:+95324384 | Msa0899900:CDS |
| AACGTCGCCTCAGGTAACTT+TGG | 0.396304 | 6_1:+95324867 | Msa0899900:CDS |
| CCAATGAATAGCTCAACAAT+TGG | 0.434045 | 6_1:-95324384 | None:intergenic |
| TGCTTCAGGTAATGGCTACT+CGG | 0.454119 | 6_1:+95324353 | Msa0899900:intron |
| ACGTCGCCTCAGGTAACTTT+GGG | 0.459659 | 6_1:+95324868 | Msa0899900:CDS |
| TCGCCTAAAGTCTAGGCAAA+GGG | 0.478044 | 6_1:-95324899 | None:intergenic |
| TTGGTAGCATAAGACTTGCT+CGG | 0.513928 | 6_1:+95324403 | Msa0899900:CDS |
| TTAAGCGTCGCCTAAAGTCT+AGG | 0.517572 | 6_1:-95324906 | None:intergenic |
| TGGTAGCATAAGACTTGCTC+GGG | 0.522565 | 6_1:+95324404 | Msa0899900:CDS |
| GTCGCCTAAAGTCTAGGCAA+AGG | 0.576462 | 6_1:-95324900 | None:intergenic |
| GCTTCAGGTAATGGCTACTC+GGG | 0.580207 | 6_1:+95324354 | Msa0899900:intron |
| TAGCATAAGACTTGCTCGGG+TGG | 0.628154 | 6_1:+95324407 | Msa0899900:CDS |
| CGCCTAAAGTCTAGGCAAAG+GGG | 0.662867 | 6_1:-95324898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTATAAATATGTGA+TGG | + | chr6_1:95324524-95324543 | Msa0899900:intron | 10.0% |
| !! | ATTTATTTATAAATATGTGA+TGG | + | chr6_1:95324524-95324543 | Msa0899900:intron | 10.0% |
| !! | ACATGAATAAAATAAAACAA+GGG | - | chr6_1:95323625-95323644 | None:intergenic | 15.0% |
| !! | AACATGAATAAAATAAAACA+AGG | - | chr6_1:95323626-95323645 | None:intergenic | 15.0% |
| !!! | AAAAAAACTTTTTAACATGA+TGG | + | chr6_1:95323928-95323947 | Msa0899900:intron | 15.0% |
| !! | TATTATAAGTAGACATAAAA+CGG | - | chr6_1:95324287-95324306 | None:intergenic | 15.0% |
| !!! | AAGAGTTTTTTTATATGTTA+AGG | + | chr6_1:95324736-95324755 | Msa0899900:intron | 15.0% |
| !!! | AGAGTTTTTTTATATGTTAA+GGG | + | chr6_1:95324737-95324756 | Msa0899900:intron | 15.0% |
| !! | ACATGAATAAAATAAAACAA+GGG | - | chr6_1:95323625-95323644 | None:intergenic | 15.0% |
| !! | AACATGAATAAAATAAAACA+AGG | - | chr6_1:95323626-95323645 | None:intergenic | 15.0% |
| !!! | AAAAAAACTTTTTAACATGA+TGG | + | chr6_1:95323928-95323947 | Msa0899900:intron | 15.0% |
| !! | TATTATAAGTAGACATAAAA+CGG | - | chr6_1:95324287-95324306 | None:intergenic | 15.0% |
| !!! | AAGAGTTTTTTTATATGTTA+AGG | + | chr6_1:95324736-95324755 | Msa0899900:intron | 15.0% |
| !!! | AGAGTTTTTTTATATGTTAA+GGG | + | chr6_1:95324737-95324756 | Msa0899900:intron | 15.0% |
| !!! | TTATTTATCTTCCTCTTTTT+TGG | + | chr6_1:95323889-95323908 | Msa0899900:intron | 20.0% |
| !! | CAAATAATGCATTTATGTTA+AGG | - | chr6_1:95324062-95324081 | None:intergenic | 20.0% |
| !! | TAAATCAAGTTCAAATTGAA+TGG | - | chr6_1:95324111-95324130 | None:intergenic | 20.0% |
| !! | GATAGAGAATAATAATTCAT+TGG | - | chr6_1:95324688-95324707 | None:intergenic | 20.0% |
| !!! | TTTTATTTATGATTAGGCAA+CGG | + | chr6_1:95324810-95324829 | Msa0899900:intron | 20.0% |
| !!! | TTATTTATCTTCCTCTTTTT+TGG | + | chr6_1:95323889-95323908 | Msa0899900:intron | 20.0% |
| !! | CAAATAATGCATTTATGTTA+AGG | - | chr6_1:95324062-95324081 | None:intergenic | 20.0% |
| !! | TAAATCAAGTTCAAATTGAA+TGG | - | chr6_1:95324111-95324130 | None:intergenic | 20.0% |
| !! | GATAGAGAATAATAATTCAT+TGG | - | chr6_1:95324688-95324707 | None:intergenic | 20.0% |
| !!! | TTTTATTTATGATTAGGCAA+CGG | + | chr6_1:95324810-95324829 | Msa0899900:intron | 20.0% |
| ! | TCTGAGTAGAATACAAATTA+AGG | - | chr6_1:95323309-95323328 | None:intergenic | 25.0% |
| !! | TTTATGTGGATTTTCTACTT+AGG | + | chr6_1:95323363-95323382 | Msa0899900:intron | 25.0% |
| ! | TGATATTCTCTCAAAATACA+AGG | + | chr6_1:95323524-95323543 | Msa0899900:intron | 25.0% |
| ! | TCTCAAAATACAAGGATTAT+TGG | + | chr6_1:95323532-95323551 | Msa0899900:intron | 25.0% |
| ! | AAAATACAAGGATTATTGGT+TGG | + | chr6_1:95323536-95323555 | Msa0899900:intron | 25.0% |
| !!! | TGTGTTTTTAACCAAAAAAG+AGG | - | chr6_1:95323903-95323922 | None:intergenic | 25.0% |
| !!! | TTTTATTTAAGCACTAGCTT+AGG | + | chr6_1:95324000-95324019 | Msa0899900:intron | 25.0% |
| !! | AATTTTATGAGCAAAAGACA+CGG | - | chr6_1:95324139-95324158 | None:intergenic | 25.0% |
| ! | TTCATGAAATTCATATCTGA+AGG | - | chr6_1:95324242-95324261 | None:intergenic | 25.0% |
| ! | CATAAAATAAGAGATTGATG+AGG | - | chr6_1:95324568-95324587 | None:intergenic | 25.0% |
| !! | AAAATTTACAAAAAGCGTGT+TGG | - | chr6_1:95324641-95324660 | None:intergenic | 25.0% |
| ! | AAAAATTAGTGTGGAAAAGT+CGG | + | chr6_1:95324760-95324779 | Msa0899900:intron | 25.0% |
| !!! | TTTTTAATTGTTGCGATATC+TGG | - | chr6_1:95324849-95324868 | None:intergenic | 25.0% |
| ! | TCTGAGTAGAATACAAATTA+AGG | - | chr6_1:95323309-95323328 | None:intergenic | 25.0% |
| !! | TTTATGTGGATTTTCTACTT+AGG | + | chr6_1:95323363-95323382 | Msa0899900:intron | 25.0% |
| ! | TGATATTCTCTCAAAATACA+AGG | + | chr6_1:95323524-95323543 | Msa0899900:intron | 25.0% |
| ! | TCTCAAAATACAAGGATTAT+TGG | + | chr6_1:95323532-95323551 | Msa0899900:intron | 25.0% |
| ! | AAAATACAAGGATTATTGGT+TGG | + | chr6_1:95323536-95323555 | Msa0899900:intron | 25.0% |
| !!! | TGTGTTTTTAACCAAAAAAG+AGG | - | chr6_1:95323903-95323922 | None:intergenic | 25.0% |
| !!! | TTTTATTTAAGCACTAGCTT+AGG | + | chr6_1:95324000-95324019 | Msa0899900:intron | 25.0% |
| !! | AATTTTATGAGCAAAAGACA+CGG | - | chr6_1:95324139-95324158 | None:intergenic | 25.0% |
| ! | TTCATGAAATTCATATCTGA+AGG | - | chr6_1:95324242-95324261 | None:intergenic | 25.0% |
| ! | CATAAAATAAGAGATTGATG+AGG | - | chr6_1:95324568-95324587 | None:intergenic | 25.0% |
| !! | AAAATTTACAAAAAGCGTGT+TGG | - | chr6_1:95324641-95324660 | None:intergenic | 25.0% |
| ! | AAAAATTAGTGTGGAAAAGT+CGG | + | chr6_1:95324760-95324779 | Msa0899900:intron | 25.0% |
| !!! | TTTTTAATTGTTGCGATATC+TGG | - | chr6_1:95324849-95324868 | None:intergenic | 25.0% |
| GCATAAATTCAGTTTACAAC+AGG | - | chr6_1:95323218-95323237 | None:intergenic | 30.0% | |
| GTATTCTACTCAGAAATGTT+AGG | + | chr6_1:95323315-95323334 | Msa0899900:intron | 30.0% | |
| ! | GATTCTTTCTGCTTTAGATA+TGG | + | chr6_1:95323435-95323454 | Msa0899900:intron | 30.0% |
| !! | TACCTGAACTTGTTTTCTAA+AGG | + | chr6_1:95323670-95323689 | Msa0899900:intron | 30.0% |
| ! | ATTTTATGAGCAAAAGACAC+GGG | - | chr6_1:95324138-95324157 | None:intergenic | 30.0% |
| !! | ACTGTTTTAAGTGCTTCAAA+CGG | + | chr6_1:95324471-95324490 | Msa0899900:intron | 30.0% |
| TGTTAAGGGAAAAATTAGTG+TGG | + | chr6_1:95324751-95324770 | Msa0899900:intron | 30.0% | |
| GCATAAATTCAGTTTACAAC+AGG | - | chr6_1:95323218-95323237 | None:intergenic | 30.0% | |
| GTATTCTACTCAGAAATGTT+AGG | + | chr6_1:95323315-95323334 | Msa0899900:intron | 30.0% | |
| ! | GATTCTTTCTGCTTTAGATA+TGG | + | chr6_1:95323435-95323454 | Msa0899900:intron | 30.0% |
| !! | TACCTGAACTTGTTTTCTAA+AGG | + | chr6_1:95323670-95323689 | Msa0899900:intron | 30.0% |
| ! | ATTTTATGAGCAAAAGACAC+GGG | - | chr6_1:95324138-95324157 | None:intergenic | 30.0% |
| !! | ACTGTTTTAAGTGCTTCAAA+CGG | + | chr6_1:95324471-95324490 | Msa0899900:intron | 30.0% |
| TGTTAAGGGAAAAATTAGTG+TGG | + | chr6_1:95324751-95324770 | Msa0899900:intron | 30.0% | |
| !!! | AAGCTGCTTTTAGCTTTATG+TGG | + | chr6_1:95323349-95323368 | Msa0899900:intron | 35.0% |
| TAGATGAACACTGAACATGA+AGG | + | chr6_1:95323473-95323492 | Msa0899900:intron | 35.0% | |
| ! | TGCCTTTAGAAAACAAGTTC+AGG | - | chr6_1:95323675-95323694 | None:intergenic | 35.0% |
| !!! | GACTTGTTAGTACTGGTTTT+TGG | + | chr6_1:95323964-95323983 | Msa0899900:intron | 35.0% |
| ATGTTGTTATCACCATTCTC+AGG | + | chr6_1:95324083-95324102 | Msa0899900:intron | 35.0% | |
| AATTGAATGGATCCTGAGAA+TGG | - | chr6_1:95324098-95324117 | None:intergenic | 35.0% | |
| ! | ATTTGTTGCAGATGGTTTGA+GGG | + | chr6_1:95324168-95324187 | Msa0899900:intron | 35.0% |
| CATATCTGAAGGATGATGTT+AGG | - | chr6_1:95324231-95324250 | None:intergenic | 35.0% | |
| CCAATGAATAGCTCAACAAT+TGG | - | chr6_1:95324387-95324406 | None:intergenic | 35.0% | |
| CCAATTGTTGAGCTATTCAT+TGG | + | chr6_1:95324384-95324403 | Msa0899900:CDS | 35.0% | |
| TACCAGACAATGTTACAACA+AGG | + | chr6_1:95324445-95324464 | Msa0899900:intron | 35.0% | |
| ACCAGACAATGTTACAACAA+GGG | + | chr6_1:95324446-95324465 | Msa0899900:intron | 35.0% | |
| !!! | AAGCTGCTTTTAGCTTTATG+TGG | + | chr6_1:95323349-95323368 | Msa0899900:intron | 35.0% |
| TAGATGAACACTGAACATGA+AGG | + | chr6_1:95323473-95323492 | Msa0899900:intron | 35.0% | |
| ! | TGCCTTTAGAAAACAAGTTC+AGG | - | chr6_1:95323675-95323694 | None:intergenic | 35.0% |
| !!! | GACTTGTTAGTACTGGTTTT+TGG | + | chr6_1:95323964-95323983 | Msa0899900:intron | 35.0% |
| ATGTTGTTATCACCATTCTC+AGG | + | chr6_1:95324083-95324102 | Msa0899900:intron | 35.0% | |
| AATTGAATGGATCCTGAGAA+TGG | - | chr6_1:95324098-95324117 | None:intergenic | 35.0% | |
| ! | ATTTGTTGCAGATGGTTTGA+GGG | + | chr6_1:95324168-95324187 | Msa0899900:intron | 35.0% |
| CATATCTGAAGGATGATGTT+AGG | - | chr6_1:95324231-95324250 | None:intergenic | 35.0% | |
| CCAATGAATAGCTCAACAAT+TGG | - | chr6_1:95324387-95324406 | None:intergenic | 35.0% | |
| CCAATTGTTGAGCTATTCAT+TGG | + | chr6_1:95324384-95324403 | Msa0899900:CDS | 35.0% | |
| TACCAGACAATGTTACAACA+AGG | + | chr6_1:95324445-95324464 | Msa0899900:intron | 35.0% | |
| ACCAGACAATGTTACAACAA+GGG | + | chr6_1:95324446-95324465 | Msa0899900:intron | 35.0% | |
| ! | AGGTGTCGTGTTATGTAGTT+TGG | + | chr6_1:95323383-95323402 | Msa0899900:intron | 40.0% |
| AACACAGAGTGTGTCGAAAA+CGG | - | chr6_1:95323708-95323727 | None:intergenic | 40.0% | |
| !! | TGTCGTAGACTTGTTAGTAC+TGG | + | chr6_1:95323957-95323976 | Msa0899900:intron | 40.0% |
| CTCAAACCATCTGCAACAAA+TGG | - | chr6_1:95324169-95324188 | None:intergenic | 40.0% | |
| ! | CATTTGTTGCAGATGGTTTG+AGG | + | chr6_1:95324167-95324186 | Msa0899900:intron | 40.0% |
| TTGACTTCCTTTCATGCTTC+AGG | + | chr6_1:95324339-95324358 | Msa0899900:intron | 40.0% | |
| TCCTTTCATGCTTCAGGTAA+TGG | + | chr6_1:95324345-95324364 | Msa0899900:intron | 40.0% | |
| ! | TTGGTAGCATAAGACTTGCT+CGG | + | chr6_1:95324403-95324422 | Msa0899900:CDS | 40.0% |
| ! | TCCCTTGTTGTAACATTGTC+TGG | - | chr6_1:95324450-95324469 | None:intergenic | 40.0% |
| !! | GTTTTAAGTGCTTCAAACGG+CGG | + | chr6_1:95324474-95324493 | Msa0899900:intron | 40.0% |
| TAGTGTGGAAAAGTCGGATA+TGG | + | chr6_1:95324766-95324785 | Msa0899900:intron | 40.0% | |
| ACAATTAAAAACGTCGCCTC+AGG | + | chr6_1:95324858-95324877 | Msa0899900:CDS | 40.0% | |
| ! | AGGTGTCGTGTTATGTAGTT+TGG | + | chr6_1:95323383-95323402 | Msa0899900:intron | 40.0% |
| AACACAGAGTGTGTCGAAAA+CGG | - | chr6_1:95323708-95323727 | None:intergenic | 40.0% | |
| !! | TGTCGTAGACTTGTTAGTAC+TGG | + | chr6_1:95323957-95323976 | Msa0899900:intron | 40.0% |
| CTCAAACCATCTGCAACAAA+TGG | - | chr6_1:95324169-95324188 | None:intergenic | 40.0% | |
| ! | CATTTGTTGCAGATGGTTTG+AGG | + | chr6_1:95324167-95324186 | Msa0899900:intron | 40.0% |
| TTGACTTCCTTTCATGCTTC+AGG | + | chr6_1:95324339-95324358 | Msa0899900:intron | 40.0% | |
| TCCTTTCATGCTTCAGGTAA+TGG | + | chr6_1:95324345-95324364 | Msa0899900:intron | 40.0% | |
| ! | TTGGTAGCATAAGACTTGCT+CGG | + | chr6_1:95324403-95324422 | Msa0899900:CDS | 40.0% |
| ! | TCCCTTGTTGTAACATTGTC+TGG | - | chr6_1:95324450-95324469 | None:intergenic | 40.0% |
| !! | GTTTTAAGTGCTTCAAACGG+CGG | + | chr6_1:95324474-95324493 | Msa0899900:intron | 40.0% |
| TAGTGTGGAAAAGTCGGATA+TGG | + | chr6_1:95324766-95324785 | Msa0899900:intron | 40.0% | |
| ACAATTAAAAACGTCGCCTC+AGG | + | chr6_1:95324858-95324877 | Msa0899900:CDS | 40.0% | |
| ! | CTCTTTGTGTTGCTGCATTC+AGG | + | chr6_1:95323819-95323838 | Msa0899900:intron | 45.0% |
| ! | GTGCTTCCATTTGTTGCAGA+TGG | + | chr6_1:95324160-95324179 | Msa0899900:intron | 45.0% |
| GATGATGTTAGGAGAGAGGT+TGG | - | chr6_1:95324220-95324239 | None:intergenic | 45.0% | |
| GAAGGATGATGTTAGGAGAG+AGG | - | chr6_1:95324224-95324243 | None:intergenic | 45.0% | |
| GCCATTACCTGAAGCATGAA+AGG | - | chr6_1:95324349-95324368 | None:intergenic | 45.0% | |
| ! | TGCTTCAGGTAATGGCTACT+CGG | + | chr6_1:95324353-95324372 | Msa0899900:intron | 45.0% |
| ! | TGGTAGCATAAGACTTGCTC+GGG | + | chr6_1:95324404-95324423 | Msa0899900:CDS | 45.0% |
| ! | CGTTTTCCCAAAGTTACCTG+AGG | - | chr6_1:95324877-95324896 | None:intergenic | 45.0% |
| TCGCCTAAAGTCTAGGCAAA+GGG | - | chr6_1:95324902-95324921 | None:intergenic | 45.0% | |
| ! | TTAAGCGTCGCCTAAAGTCT+AGG | - | chr6_1:95324909-95324928 | None:intergenic | 45.0% |
| ! | CTCTTTGTGTTGCTGCATTC+AGG | + | chr6_1:95323819-95323838 | Msa0899900:intron | 45.0% |
| ! | GTGCTTCCATTTGTTGCAGA+TGG | + | chr6_1:95324160-95324179 | Msa0899900:intron | 45.0% |
| GATGATGTTAGGAGAGAGGT+TGG | - | chr6_1:95324220-95324239 | None:intergenic | 45.0% | |
| GAAGGATGATGTTAGGAGAG+AGG | - | chr6_1:95324224-95324243 | None:intergenic | 45.0% | |
| GCCATTACCTGAAGCATGAA+AGG | - | chr6_1:95324349-95324368 | None:intergenic | 45.0% | |
| ! | TGCTTCAGGTAATGGCTACT+CGG | + | chr6_1:95324353-95324372 | Msa0899900:intron | 45.0% |
| ! | TGGTAGCATAAGACTTGCTC+GGG | + | chr6_1:95324404-95324423 | Msa0899900:CDS | 45.0% |
| ! | CGTTTTCCCAAAGTTACCTG+AGG | - | chr6_1:95324877-95324896 | None:intergenic | 45.0% |
| TCGCCTAAAGTCTAGGCAAA+GGG | - | chr6_1:95324902-95324921 | None:intergenic | 45.0% | |
| ! | TTAAGCGTCGCCTAAAGTCT+AGG | - | chr6_1:95324909-95324928 | None:intergenic | 45.0% |
| !!! | TTATATTTTTATTTATGATT+AGG | + | chr6_1:95324804-95324823 | Msa0899900:intron | 5.0% |
| !!! | TTATATTTTTATTTATGATT+AGG | + | chr6_1:95324804-95324823 | Msa0899900:intron | 5.0% |
| ! | GCTTCAGGTAATGGCTACTC+GGG | + | chr6_1:95324354-95324373 | Msa0899900:intron | 50.0% |
| ! | TAGCATAAGACTTGCTCGGG+TGG | + | chr6_1:95324407-95324426 | Msa0899900:CDS | 50.0% |
| GTGGAAAAGTCGGATATGGC+AGG | + | chr6_1:95324770-95324789 | Msa0899900:intron | 50.0% | |
| AACGTCGCCTCAGGTAACTT+TGG | + | chr6_1:95324867-95324886 | Msa0899900:CDS | 50.0% | |
| ACGTCGCCTCAGGTAACTTT+GGG | + | chr6_1:95324868-95324887 | Msa0899900:CDS | 50.0% | |
| GTCCCCTTTGCCTAGACTTT+AGG | + | chr6_1:95324896-95324915 | Msa0899900:CDS | 50.0% | |
| CGCCTAAAGTCTAGGCAAAG+GGG | - | chr6_1:95324901-95324920 | None:intergenic | 50.0% | |
| GTCGCCTAAAGTCTAGGCAA+AGG | - | chr6_1:95324903-95324922 | None:intergenic | 50.0% | |
| ! | GCTTCAGGTAATGGCTACTC+GGG | + | chr6_1:95324354-95324373 | Msa0899900:intron | 50.0% |
| ! | TAGCATAAGACTTGCTCGGG+TGG | + | chr6_1:95324407-95324426 | Msa0899900:CDS | 50.0% |
| GTGGAAAAGTCGGATATGGC+AGG | + | chr6_1:95324770-95324789 | Msa0899900:intron | 50.0% | |
| AACGTCGCCTCAGGTAACTT+TGG | + | chr6_1:95324867-95324886 | Msa0899900:CDS | 50.0% | |
| ACGTCGCCTCAGGTAACTTT+GGG | + | chr6_1:95324868-95324887 | Msa0899900:CDS | 50.0% | |
| GTCCCCTTTGCCTAGACTTT+AGG | + | chr6_1:95324896-95324915 | Msa0899900:CDS | 50.0% | |
| CGCCTAAAGTCTAGGCAAAG+GGG | - | chr6_1:95324901-95324920 | None:intergenic | 50.0% | |
| GTCGCCTAAAGTCTAGGCAA+AGG | - | chr6_1:95324903-95324922 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95323187 | 95324951 | 95323187 | ID=Msa0899900;Name=Msa0899900 |
| chr6_1 | mRNA | 95323187 | 95324951 | 95323187 | ID=Msa0899900-mRNA-1;Parent=Msa0899900;Name=Msa0899900-mRNA-1;_AED=0.78;_eAED=0.79;_QI=0|0|0|0.5|0.33|0.25|4|0|59 |
| chr6_1 | exon | 95323187 | 95323190 | 95323187 | ID=Msa0899900-mRNA-1:exon:16430;Parent=Msa0899900-mRNA-1 |
| chr6_1 | exon | 95324361 | 95324428 | 95324361 | ID=Msa0899900-mRNA-1:exon:16431;Parent=Msa0899900-mRNA-1 |
| chr6_1 | exon | 95324826 | 95324831 | 95324826 | ID=Msa0899900-mRNA-1:exon:16432;Parent=Msa0899900-mRNA-1 |
| chr6_1 | exon | 95324850 | 95324951 | 95324850 | ID=Msa0899900-mRNA-1:exon:16433;Parent=Msa0899900-mRNA-1 |
| chr6_1 | CDS | 95323187 | 95323190 | 95323187 | ID=Msa0899900-mRNA-1:cds;Parent=Msa0899900-mRNA-1 |
| chr6_1 | CDS | 95324361 | 95324428 | 95324361 | ID=Msa0899900-mRNA-1:cds;Parent=Msa0899900-mRNA-1 |
| chr6_1 | CDS | 95324826 | 95324831 | 95324826 | ID=Msa0899900-mRNA-1:cds;Parent=Msa0899900-mRNA-1 |
| chr6_1 | CDS | 95324850 | 95324951 | 95324850 | ID=Msa0899900-mRNA-1:cds;Parent=Msa0899900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
