Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957400 | sp|Q9FLH8|SCRK7_ARATH | 61.610 | 323 | 56 | 2 | 18 | 272 | 16 | 338 | 1.42e-132 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957400 | A0A396HJ77 | 76.218 | 349 | 12 | 3 | 1 | 278 | 1 | 349 | 1.77e-176 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377600 | Msa0957400 | 0.801774 | 7.682701e-49 | -8.615850e-47 |
| Msa0892240 | Msa0957400 | 0.857413 | 1.660129e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957400 | MtrunA17_Chr6g0474331 | 76.218 | 349 | 12 | 3 | 1 | 278 | 1 | 349 | 3.41e-180 | 499 |
| Msa0957400 | MtrunA17_Chr1g0204101 | 66.467 | 334 | 43 | 3 | 6 | 271 | 5 | 337 | 2.58e-147 | 416 |
| Msa0957400 | MtrunA17_Chr5g0434971 | 60.377 | 318 | 57 | 3 | 23 | 272 | 65 | 381 | 6.44e-117 | 340 |
| Msa0957400 | MtrunA17_Chr1g0183241 | 56.494 | 308 | 75 | 3 | 17 | 271 | 102 | 403 | 8.19e-107 | 316 |
| Msa0957400 | MtrunA17_Chr4g0033631 | 51.090 | 321 | 87 | 4 | 23 | 275 | 13 | 331 | 8.20e-104 | 305 |
| Msa0957400 | MtrunA17_Chr1g0188291 | 50.633 | 316 | 86 | 4 | 25 | 272 | 8 | 321 | 1.20e-103 | 305 |
| Msa0957400 | MtrunA17_Chr2g0329451 | 50.314 | 318 | 88 | 4 | 23 | 272 | 12 | 327 | 1.94e-103 | 304 |
| Msa0957400 | MtrunA17_Chr1g0183661 | 53.763 | 279 | 63 | 3 | 40 | 257 | 3 | 276 | 3.65e-91 | 272 |
| Msa0957400 | MtrunA17_Chr1g0171921 | 49.387 | 326 | 88 | 7 | 17 | 270 | 175 | 495 | 8.07e-83 | 258 |
| Msa0957400 | MtrunA17_Chr1g0177771 | 49.524 | 315 | 91 | 6 | 17 | 270 | 245 | 552 | 3.68e-81 | 254 |
| Msa0957400 | MtrunA17_Chr1g0177321 | 46.130 | 323 | 81 | 6 | 17 | 270 | 171 | 469 | 1.44e-70 | 224 |
| Msa0957400 | MtrunA17_Chr1g0176221 | 55.288 | 208 | 70 | 4 | 86 | 271 | 1 | 207 | 1.65e-69 | 214 |
| Msa0957400 | MtrunA17_Chr7g0246421 | 48.438 | 192 | 47 | 1 | 133 | 272 | 2 | 193 | 6.45e-54 | 173 |
| Msa0957400 | MtrunA17_Chr7g0246411 | 54.615 | 130 | 41 | 2 | 25 | 136 | 41 | 170 | 7.71e-39 | 134 |
| Msa0957400 | MtrunA17_Chr4g0020911 | 60.526 | 114 | 45 | 0 | 133 | 246 | 56 | 169 | 4.71e-37 | 130 |
| Msa0957400 | MtrunA17_Chr5g0419371 | 29.431 | 299 | 156 | 8 | 13 | 259 | 192 | 487 | 2.28e-28 | 113 |
| Msa0957400 | MtrunA17_Chr4g0008441 | 31.163 | 215 | 117 | 3 | 25 | 208 | 93 | 307 | 3.86e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957400 | AT5G51830.2 | 61.610 | 323 | 56 | 2 | 18 | 272 | 16 | 338 | 1.44e-133 | 382 |
| Msa0957400 | AT5G51830.1 | 61.610 | 323 | 56 | 2 | 18 | 272 | 16 | 338 | 1.44e-133 | 382 |
| Msa0957400 | AT1G66430.1 | 55.114 | 352 | 81 | 4 | 2 | 277 | 34 | 384 | 8.28e-121 | 351 |
| Msa0957400 | AT4G10260.1 | 53.226 | 310 | 75 | 4 | 23 | 264 | 4 | 311 | 6.23e-106 | 311 |
| Msa0957400 | AT3G59480.1 | 51.104 | 317 | 85 | 4 | 24 | 272 | 9 | 323 | 1.97e-103 | 304 |
| Msa0957400 | AT1G06020.1 | 50.629 | 318 | 87 | 3 | 25 | 274 | 10 | 325 | 4.76e-103 | 304 |
| Msa0957400 | AT2G31390.1 | 50.633 | 316 | 86 | 4 | 25 | 272 | 9 | 322 | 2.10e-101 | 299 |
| Msa0957400 | AT1G06030.1 | 49.688 | 320 | 91 | 4 | 21 | 272 | 7 | 324 | 8.55e-101 | 298 |
| Msa0957400 | AT1G69200.1 | 30.973 | 226 | 125 | 4 | 51 | 246 | 246 | 470 | 1.87e-27 | 111 |
| Msa0957400 | AT3G54090.1 | 29.514 | 288 | 145 | 7 | 25 | 255 | 103 | 389 | 2.65e-27 | 110 |
| Msa0957400 | AT1G50390.1 | 40.714 | 140 | 62 | 3 | 154 | 272 | 1 | 140 | 1.75e-24 | 96.3 |
Find 70 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGCCAATCTTAAATT+TGG | 0.189545 | 6_3:+68200488 | None:intergenic |
| CAAATTTAAGATTGGCATTA+TGG | 0.194373 | 6_3:-68200487 | Msa0957400:CDS |
| TTGAATAAAGAAGAAATTAA+TGG | 0.201929 | 6_3:+68203290 | None:intergenic |
| AAGTCCAAAGATTATAATTT+TGG | 0.227394 | 6_3:+68198131 | None:intergenic |
| CCTTCCAAAATTATAATCTT+TGG | 0.231689 | 6_3:-68198135 | Msa0957400:three_prime_UTR |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6_3:-68200445 | Msa0957400:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6_3:-68201424 | Msa0957400:CDS |
| TTAAACTAATTGAGCCAAAA+TGG | 0.312735 | 6_3:+68200588 | None:intergenic |
| TCTTATATTACAGCTGCTTC+TGG | 0.321751 | 6_3:+68198239 | None:intergenic |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6_3:-68201425 | Msa0957400:CDS |
| CCAGTGAACTTGTTTCCTTA+TGG | 0.328368 | 6_3:+68201438 | None:intergenic |
| TGCAAAACAGCTTCCTTTGT+AGG | 0.347798 | 6_3:+68198269 | None:intergenic |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6_3:+68198307 | None:intergenic |
| CAGAACAATGTCGATACTTC+TGG | 0.361492 | 6_3:-68200856 | Msa0957400:CDS |
| GAGAATGCAACCAGAACTTT+TGG | 0.364359 | 6_3:+68200520 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.375368 | 6_3:-68200530 | Msa0957400:CDS |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6_3:+68200752 | None:intergenic |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6_3:-68200423 | Msa0957400:intron |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6_3:-68200466 | Msa0957400:CDS |
| CAAGGTATTCATCAATATAG+TGG | 0.399518 | 6_3:-68198016 | None:intergenic |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6_3:+68200210 | None:intergenic |
| ATACGATCCAAATTTAAGAT+TGG | 0.426939 | 6_3:-68200495 | Msa0957400:CDS |
| TTGAGCTATTAATATAGCTT+AGG | 0.432341 | 6_3:-68198184 | Msa0957400:three_prime_UTR |
| TGCTGTTGGTATATCTAGAT+TGG | 0.434341 | 6_3:-68201306 | Msa0957400:CDS |
| AAGAAATTAATGGACCGAAA+AGG | 0.442736 | 6_3:+68203300 | None:intergenic |
| AGAAATTAATGGACCGAAAA+GGG | 0.457687 | 6_3:+68203301 | None:intergenic |
| GCTGTTGGTATATCTAGATT+GGG | 0.464108 | 6_3:-68201305 | Msa0957400:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6_3:-68200444 | Msa0957400:CDS |
| GCTCACTCTAATACACCATC+AGG | 0.488575 | 6_3:-68203167 | Msa0957400:intron |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6_3:+68200464 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6_3:+68201347 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6_3:-68201366 | Msa0957400:CDS |
| TCTTAGAAAAGAAGACCATA+AGG | 0.516761 | 6_3:-68201453 | Msa0957400:CDS |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6_3:-68200461 | Msa0957400:CDS |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6_3:-68201347 | Msa0957400:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6_3:-68201423 | Msa0957400:CDS |
| GCTTCCTTTGTAGGAAGTGA+AGG | 0.529815 | 6_3:+68198278 | None:intergenic |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6_3:-68198308 | Msa0957400:CDS |
| AGCTAATGCAGTCCTTGCAT+TGG | 0.532620 | 6_3:+68200819 | None:intergenic |
| GGCATTATGGCCGTCTGCCG+AGG | 0.533060 | 6_3:-68200474 | Msa0957400:CDS |
| TGATAATATTTATGAATGAA+AGG | 0.533996 | 6_3:+68203328 | None:intergenic |
| TGAGAGTAGCAATAAAATCA+AGG | 0.539361 | 6_3:-68198034 | Msa0957400:three_prime_UTR |
| AGATATACCAACAGCAACAT+TGG | 0.540241 | 6_3:+68201313 | None:intergenic |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6_3:-68200710 | Msa0957400:intron |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6_3:+68201355 | None:intergenic |
| AAGGTATTCATCAATATAGT+GGG | 0.544795 | 6_3:-68198015 | None:intergenic |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6_3:+68200457 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6_3:+68200415 | None:intergenic |
| CCATAAGGAAACAAGTTCAC+TGG | 0.556670 | 6_3:-68201438 | Msa0957400:CDS |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6_3:+68201317 | None:intergenic |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6_3:-68201320 | Msa0957400:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6_3:+68201409 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6_3:+68200745 | None:intergenic |
| CAAGAACTCACGCTCACCGT+CGG | 0.572605 | 6_3:+68200780 | None:intergenic |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6_3:+68201380 | None:intergenic |
| AATTCCTTCACTTCCTACAA+AGG | 0.581630 | 6_3:-68198282 | Msa0957400:CDS |
| GTTGGTATATCTAGATTGGG+AGG | 0.595607 | 6_3:-68201302 | Msa0957400:CDS |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6_3:+68201329 | None:intergenic |
| TGAGGTTTGATGCCAATGCA+AGG | 0.607359 | 6_3:-68200831 | Msa0957400:CDS |
| TATTAATATAGCTTAGGTGA+TGG | 0.616025 | 6_3:-68198178 | Msa0957400:three_prime_UTR |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6_3:-68201392 | Msa0957400:CDS |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6_3:-68201389 | Msa0957400:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6_3:-68201393 | Msa0957400:CDS |
| CATGTATATACAGATAAGTG+AGG | 0.626485 | 6_3:-68200265 | Msa0957400:intron |
| TTTGTCACACTTAGATCCGA+CGG | 0.633560 | 6_3:-68200796 | Msa0957400:CDS |
| ATGTCGATACTTCTGGCATG+AGG | 0.638705 | 6_3:-68200849 | Msa0957400:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6_3:-68201372 | Msa0957400:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6_3:-68201344 | Msa0957400:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6_3:+68200557 | None:intergenic |
| GTATATACAGATAAGTGAGG+AGG | 0.677503 | 6_3:-68200262 | Msa0957400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATCTTTTTTTTTTG+TGG | + | chr6_3:68202283-68202302 | None:intergenic | 10.0% |
| !! | TGATAATATTTATGAATGAA+AGG | + | chr6_3:68198091-68198110 | None:intergenic | 15.0% |
| !! | TTGAATAAAGAAGAAATTAA+TGG | + | chr6_3:68198129-68198148 | None:intergenic | 15.0% |
| !!! | GTTACAATAATTTTTTACTA+AGG | + | chr6_3:68202380-68202399 | None:intergenic | 15.0% |
| !! | TAGTAAAAAATTATTGTAAC+CGG | - | chr6_3:68202380-68202399 | Msa0957400:intron | 15.0% |
| !!! | AAAAGAGAATATTATTTTAC+TGG | - | chr6_3:68202445-68202464 | Msa0957400:intron | 15.0% |
| !!! | GAGATTATTTTTTATACAAA+TGG | - | chr6_3:68202633-68202652 | Msa0957400:intron | 15.0% |
| !!! | GTTTTTGTTTGAGAATTTTA+AGG | - | chr6_3:68198333-68198352 | Msa0957400:CDS | 20.0% |
| !! | TCGAACTAATATCTATATAT+AGG | - | chr6_3:68198892-68198911 | Msa0957400:intron | 20.0% |
| !! | TTATGAATTATGGAATCATA+GGG | + | chr6_3:68198986-68199005 | None:intergenic | 20.0% |
| !! | ATTATGAATTATGGAATCAT+AGG | + | chr6_3:68198987-68199006 | None:intergenic | 20.0% |
| !!! | TTTTCATATCAACTACTAAA+AGG | + | chr6_3:68199444-68199463 | None:intergenic | 20.0% |
| !!! | AGTAGTTGATATGAAAAATT+TGG | - | chr6_3:68199447-68199466 | Msa0957400:intron | 20.0% |
| !!! | TTCCTTATAATTTGTGTATT+AGG | - | chr6_3:68200493-68200512 | Msa0957400:CDS | 20.0% |
| !! | AACCTAATACACAAATTATA+AGG | + | chr6_3:68200498-68200517 | None:intergenic | 20.0% |
| !!! | TTATAATTTGTGTATTAGGT+TGG | - | chr6_3:68200497-68200516 | Msa0957400:CDS | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | - | chr6_3:68200743-68200762 | Msa0957400:CDS | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | + | chr6_3:68200776-68200795 | None:intergenic | 20.0% |
| !! | ACATCATATACAAATTGATA+TGG | + | chr6_3:68201317-68201336 | None:intergenic | 20.0% |
| !! | ATGCAAATAATTGAATGTAA+TGG | - | chr6_3:68201360-68201379 | Msa0957400:CDS | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | - | chr6_3:68201723-68201742 | Msa0957400:intron | 20.0% |
| !! | TATTACTAATAACACCAATT+TGG | + | chr6_3:68201740-68201759 | None:intergenic | 20.0% |
| !!! | GTGTTATTAGTAATAAGTTA+TGG | - | chr6_3:68201745-68201764 | Msa0957400:intron | 20.0% |
| !! | TTATGGAATTATAGTCTATT+TGG | - | chr6_3:68201762-68201781 | Msa0957400:intron | 20.0% |
| !!! | TTTATCTTTTTTTTTTGTGG+TGG | + | chr6_3:68202280-68202299 | None:intergenic | 20.0% |
| !! | AGTAAAAAATTATTGTAACC+GGG | - | chr6_3:68202381-68202400 | Msa0957400:intron | 20.0% |
| !!! | ATAATATTTTTACTGGTTTC+TGG | - | chr6_3:68202565-68202584 | Msa0957400:intron | 20.0% |
| !!! | TAATATTTTTACTGGTTTCT+GGG | - | chr6_3:68202566-68202585 | Msa0957400:intron | 20.0% |
| !!! | ATTATATATATTTTCTTGGC+AGG | - | chr6_3:68203038-68203057 | Msa0957400:intron | 20.0% |
| !!! | AATTTTGGAAGGAAAAAAAT+TGG | + | chr6_3:68203273-68203292 | None:intergenic | 20.0% |
| !!! | AAGTCCAAAGATTATAATTT+TGG | + | chr6_3:68203288-68203307 | None:intergenic | 20.0% |
| !!! | ATTAACCTTTTAGTTTTTGA+AGG | - | chr6_3:68203348-68203367 | Msa0957400:five_prime_UTR | 20.0% |
| !! | ATATTATCATCTACCCTTTT+CGG | - | chr6_3:68198102-68198121 | Msa0957400:three_prime_UTR | 25.0% |
| ! | TTAATAAAAAACAATGGAGG+TGG | + | chr6_3:68198227-68198246 | None:intergenic | 25.0% |
| ! | CCATTAATAAAAAACAATGG+AGG | + | chr6_3:68198230-68198249 | None:intergenic | 25.0% |
| !!! | CCTCCATTGTTTTTTATTAA+TGG | - | chr6_3:68198227-68198246 | Msa0957400:exon | 25.0% |
| ! | GAGCCATTAATAAAAAACAA+TGG | + | chr6_3:68198233-68198252 | None:intergenic | 25.0% |
| !!! | AGGATTTTATTTACCTATGT+TGG | - | chr6_3:68198353-68198372 | Msa0957400:CDS | 25.0% |
| !!! | TAAATTTCTAGTTCCAACAT+AGG | + | chr6_3:68198369-68198388 | None:intergenic | 25.0% |
| ! | GAGAATAAGCAAAAACAAAT+GGG | - | chr6_3:68198590-68198609 | Msa0957400:intron | 25.0% |
| ! | ATCAACTTTAGTTAGTTGAT+AGG | - | chr6_3:68198765-68198784 | Msa0957400:intron | 25.0% |
| ! | TTGTGGTCTATTATGAATTA+TGG | + | chr6_3:68198996-68199015 | None:intergenic | 25.0% |
| ! | TAATTCATAATAGACCACAA+AGG | - | chr6_3:68198996-68199015 | Msa0957400:intron | 25.0% |
| ! | TGATTGAATATACATTGATC+TGG | - | chr6_3:68199355-68199374 | Msa0957400:intron | 25.0% |
| !!! | AAAATTTGGTTCGATTTTAG+AGG | - | chr6_3:68199461-68199480 | Msa0957400:intron | 25.0% |
| ! | TCAAGATCATATAAAGTAAG+TGG | + | chr6_3:68199569-68199588 | None:intergenic | 25.0% |
| ! | ACTTTATATGATCTTGACTA+CGG | - | chr6_3:68199572-68199591 | Msa0957400:intron | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+TGG | - | chr6_3:68199831-68199850 | Msa0957400:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | - | chr6_3:68199904-68199923 | Msa0957400:intron | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | + | chr6_3:68200244-68200263 | None:intergenic | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | + | chr6_3:68200341-68200360 | None:intergenic | 25.0% |
| ! | TTGATTCATGACTTAAAACT+AGG | - | chr6_3:68200418-68200437 | Msa0957400:intron | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | - | chr6_3:68200795-68200814 | Msa0957400:CDS | 25.0% |
| ! | TTAAACTAATTGAGCCAAAA+TGG | + | chr6_3:68200831-68200850 | None:intergenic | 25.0% |
| !! | ATACGATCCAAATTTAAGAT+TGG | - | chr6_3:68200921-68200940 | Msa0957400:intron | 25.0% |
| ! | CATAATGCCAATCTTAAATT+TGG | + | chr6_3:68200931-68200950 | None:intergenic | 25.0% |
| !! | CAAATTTAAGATTGGCATTA+TGG | - | chr6_3:68200929-68200948 | Msa0957400:intron | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | + | chr6_3:68201004-68201023 | None:intergenic | 25.0% |
| ! | AAATTATACACATGATGTAG+TGG | - | chr6_3:68201021-68201040 | Msa0957400:intron | 25.0% |
| !!! | TTTTTTCTAGTGAGCTTAAT+CGG | - | chr6_3:68201064-68201083 | Msa0957400:intron | 25.0% |
| ! | TACATGAAAAATACAACATC+AGG | + | chr6_3:68201137-68201156 | None:intergenic | 25.0% |
| ! | AAAACAACATCATCATCATT+AGG | + | chr6_3:68201209-68201228 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTGTTACTGA+AGG | - | chr6_3:68201254-68201273 | Msa0957400:intron | 25.0% |
| ! | AACTCTTAATTGTTACTGAA+GGG | - | chr6_3:68201255-68201274 | Msa0957400:intron | 25.0% |
| !! | TTTAGATTGAAAGGTATGAT+CGG | + | chr6_3:68201427-68201446 | None:intergenic | 25.0% |
| ! | GTTATCAGATCTTATAACAA+AGG | - | chr6_3:68201465-68201484 | Msa0957400:CDS | 25.0% |
| ! | ACTTATTTAAACGCACATAT+GGG | + | chr6_3:68201707-68201726 | None:intergenic | 25.0% |
| ! | AACTTATTTAAACGCACATA+TGG | + | chr6_3:68201708-68201727 | None:intergenic | 25.0% |
| !! | CTTATCATAAAGTGTTTATG+TGG | + | chr6_3:68201969-68201988 | None:intergenic | 25.0% |
| ! | AAACAAACCTGAAAAATACT+CGG | + | chr6_3:68202171-68202190 | None:intergenic | 25.0% |
| ! | GTAAAAAATTATTGTAACCG+GGG | - | chr6_3:68202382-68202401 | Msa0957400:intron | 25.0% |
| ! | AGAGATAAAGGAACTAAAAT+TGG | - | chr6_3:68202611-68202630 | Msa0957400:intron | 25.0% |
| !!! | TAAATTATCATTTGCTGTTC+AGG | - | chr6_3:68202659-68202678 | Msa0957400:intron | 25.0% |
| !!! | AAATTATCATTTGCTGTTCA+GGG | - | chr6_3:68202660-68202679 | Msa0957400:intron | 25.0% |
| !! | TTGTATTTTGCAAATGTATG+TGG | - | chr6_3:68203084-68203103 | Msa0957400:intron | 25.0% |
| ! | TTGAGCTATTAATATAGCTT+AGG | - | chr6_3:68203232-68203251 | Msa0957400:five_prime_UTR | 25.0% |
| ! | TATTAATATAGCTTAGGTGA+TGG | - | chr6_3:68203238-68203257 | Msa0957400:five_prime_UTR | 25.0% |
| !! | CCAAAGATTATAATTTTGGA+AGG | + | chr6_3:68203284-68203303 | None:intergenic | 25.0% |
| ! | CCTTCCAAAATTATAATCTT+TGG | - | chr6_3:68203281-68203300 | Msa0957400:five_prime_UTR | 25.0% |
| ! | TACAACAAGAACAAAAAATC+TGG | + | chr6_3:68203312-68203331 | None:intergenic | 25.0% |
| ! | AGAAATTAATGGACCGAAAA+GGG | + | chr6_3:68198118-68198137 | None:intergenic | 30.0% |
| ! | AAGAAATTAATGGACCGAAA+AGG | + | chr6_3:68198119-68198138 | None:intergenic | 30.0% |
| AGAAAGAAGAAAAAACCTGA+TGG | + | chr6_3:68198267-68198286 | None:intergenic | 30.0% | |
| AGACAAAGTTTGCATCTTTA+TGG | - | chr6_3:68198389-68198408 | Msa0957400:intron | 30.0% | |
| GACAAAGTTTGCATCTTTAT+GGG | - | chr6_3:68198390-68198409 | Msa0957400:intron | 30.0% | |
| CAACGTGAATTAACTCATTT+AGG | - | chr6_3:68198533-68198552 | Msa0957400:intron | 30.0% | |
| CGAGAATAAGCAAAAACAAA+TGG | - | chr6_3:68198589-68198608 | Msa0957400:intron | 30.0% | |
| GTTAACTAGAGTTAATAGCT+TGG | - | chr6_3:68198787-68198806 | Msa0957400:intron | 30.0% | |
| ATTACGAATCATGGAATCAT+AGG | + | chr6_3:68199023-68199042 | None:intergenic | 30.0% | |
| ATCAACGTAAAGTGTATAAG+TGG | + | chr6_3:68199339-68199358 | None:intergenic | 30.0% | |
| GACTATCAATGACTAAAGAA+AGG | + | chr6_3:68199401-68199420 | None:intergenic | 30.0% | |
| TTAACAGCTTATATGAGAAC+AGG | - | chr6_3:68199674-68199693 | Msa0957400:intron | 30.0% | |
| CTTATATGAGAACAGGTTTA+TGG | - | chr6_3:68199681-68199700 | Msa0957400:intron | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | + | chr6_3:68199828-68199847 | None:intergenic | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | + | chr6_3:68199914-68199933 | None:intergenic | 30.0% | |
| TCTTAGAAAAGAAGACCATA+AGG | - | chr6_3:68199963-68199982 | Msa0957400:intron | 30.0% | |
| ATGACTTAAAACTAGGTCTT+TGG | - | chr6_3:68200425-68200444 | Msa0957400:CDS | 30.0% | |
| AGATGAATTTGGTTACATGT+TGG | - | chr6_3:68200523-68200542 | Msa0957400:CDS | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | - | chr6_3:68200706-68200725 | Msa0957400:intron | 30.0% | |
| GAATGGCATAATGAGTATAT+GGG | - | chr6_3:68200972-68200991 | Msa0957400:intron | 30.0% | |
| CATGTATATACAGATAAGTG+AGG | - | chr6_3:68201151-68201170 | Msa0957400:intron | 30.0% | |
| !! | GAGATTACATTTTTGACTGA+AGG | - | chr6_3:68201176-68201195 | Msa0957400:intron | 30.0% |
| AAGATCTGATAACTCATAGT+AGG | + | chr6_3:68201458-68201477 | None:intergenic | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | + | chr6_3:68201890-68201909 | None:intergenic | 30.0% |
| AATTTGGCACCACAATTATT+AGG | + | chr6_3:68202037-68202056 | None:intergenic | 30.0% | |
| AACAAACCTGAAAAATACTC+GGG | + | chr6_3:68202170-68202189 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr6_3:68202235-68202254 | Msa0957400:intron | 30.0% | |
| ! | TATTCATGGTTTTTAAACCC+CGG | + | chr6_3:68202402-68202421 | None:intergenic | 30.0% |
| TTATACATCACAACGACAAA+TGG | + | chr6_3:68202943-68202962 | None:intergenic | 30.0% | |
| ATTTGTCGTTGTGATGTATA+AGG | - | chr6_3:68202942-68202961 | Msa0957400:intron | 30.0% | |
| TTTGTCGTTGTGATGTATAA+GGG | - | chr6_3:68202943-68202962 | Msa0957400:intron | 30.0% | |
| TGAGAGTAGCAATAAAATCA+AGG | - | chr6_3:68203382-68203401 | Msa0957400:five_prime_UTR | 30.0% | |
| GGGAATGAGCAATTCTAAAT+GGG | + | chr6_3:68198478-68198497 | None:intergenic | 35.0% | |
| AATACAAGTTAACTCACGCT+CGG | + | chr6_3:68198511-68198530 | None:intergenic | 35.0% | |
| TTTCAGCTTCAGTTAACTCA+CGG | - | chr6_3:68198562-68198581 | Msa0957400:intron | 35.0% | |
| !!! | TGTGTCCTTTTTTTCCAGAT+TGG | - | chr6_3:68198670-68198689 | Msa0957400:intron | 35.0% |
| !!! | GTGTCCTTTTTTTCCAGATT+GGG | - | chr6_3:68198671-68198690 | Msa0957400:intron | 35.0% |
| AGCTAGGATTATGCGTTATT+GGG | + | chr6_3:68198716-68198735 | None:intergenic | 35.0% | |
| TAGCTAGGATTATGCGTTAT+TGG | + | chr6_3:68198717-68198736 | None:intergenic | 35.0% | |
| GCATAATCCTAGCTAGATTA+GGG | - | chr6_3:68198722-68198741 | Msa0957400:intron | 35.0% | |
| ATATAGTCCCTAATCTAGCT+AGG | + | chr6_3:68198732-68198751 | None:intergenic | 35.0% | |
| AGTACTCGAACATAAACAAC+TGG | - | chr6_3:68198819-68198838 | Msa0957400:intron | 35.0% | |
| AACAACTGGAGTTAGTTGAT+TGG | - | chr6_3:68198833-68198852 | Msa0957400:intron | 35.0% | |
| TTGTGGTCTATTACGAATCA+TGG | + | chr6_3:68199032-68199051 | None:intergenic | 35.0% | |
| TGATTCGTAATAGACCACAA+AGG | - | chr6_3:68199032-68199051 | Msa0957400:intron | 35.0% | |
| ATCATTGGAGATTACCTCAA+CGG | + | chr6_3:68199106-68199125 | None:intergenic | 35.0% | |
| AACAACAAATGCGAGATCAT+TGG | + | chr6_3:68199121-68199140 | None:intergenic | 35.0% | |
| !! | AATGATCTCGCATTTGTTGT+TGG | - | chr6_3:68199120-68199139 | Msa0957400:intron | 35.0% |
| !! | ATGATCTCGCATTTGTTGTT+GGG | - | chr6_3:68199121-68199140 | Msa0957400:intron | 35.0% |
| !! | CATTTGTTGTTGGGTTTCAT+GGG | - | chr6_3:68199130-68199149 | Msa0957400:intron | 35.0% |
| ATATGAGCTCCCCTATATAA+AGG | - | chr6_3:68199162-68199181 | Msa0957400:intron | 35.0% | |
| TACGCAACCACCTTTATATA+GGG | + | chr6_3:68199175-68199194 | None:intergenic | 35.0% | |
| AGAGAATTCGATAGAAGAGT+CGG | + | chr6_3:68199237-68199256 | None:intergenic | 35.0% | |
| !! | TTTGGTTCGATTTTAGAGGA+CGG | - | chr6_3:68199465-68199484 | Msa0957400:intron | 35.0% |
| ACACATCATGTAGTTACACA+AGG | - | chr6_3:68199530-68199549 | Msa0957400:intron | 35.0% | |
| TGAACTACTGATGCATTTCA+TGG | - | chr6_3:68199642-68199661 | Msa0957400:intron | 35.0% | |
| ATATGAGAACAGGTTTATGG+TGG | - | chr6_3:68199684-68199703 | Msa0957400:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | + | chr6_3:68199866-68199885 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | + | chr6_3:68200106-68200125 | None:intergenic | 35.0% | |
| TGCTGTTGGTATATCTAGAT+TGG | - | chr6_3:68200110-68200129 | Msa0957400:intron | 35.0% | |
| GCTGTTGGTATATCTAGATT+GGG | - | chr6_3:68200111-68200130 | Msa0957400:intron | 35.0% | |
| !! | TTCATCTGCTTTTATAGGCA+AGG | - | chr6_3:68200137-68200156 | Msa0957400:intron | 35.0% |
| ! | CAGGCTACAATTTTCCATTT+TGG | - | chr6_3:68200814-68200833 | Msa0957400:CDS | 35.0% |
| ATGAAGATTGCCAAAAGTTC+TGG | - | chr6_3:68200886-68200905 | Msa0957400:intron | 35.0% | |
| GGAATGGCATAATGAGTATA+TGG | - | chr6_3:68200971-68200990 | Msa0957400:intron | 35.0% | |
| GTATATACAGATAAGTGAGG+AGG | - | chr6_3:68201154-68201173 | Msa0957400:intron | 35.0% | |
| AATTGTTACTGAAGGGTCTA+AGG | - | chr6_3:68201262-68201281 | Msa0957400:intron | 35.0% | |
| ATTGTTACTGAAGGGTCTAA+GGG | - | chr6_3:68201263-68201282 | Msa0957400:intron | 35.0% | |
| GGGTTGTAGATATTACACAA+AGG | - | chr6_3:68201283-68201302 | Msa0957400:CDS | 35.0% | |
| !! | AATGTAATGGACATGTGTCA+GGG | - | chr6_3:68201373-68201392 | Msa0957400:CDS | 35.0% |
| GACTGACACTTTAGATTGAA+AGG | + | chr6_3:68201436-68201455 | None:intergenic | 35.0% | |
| GCTAATCCAAACAACATCTT+AGG | + | chr6_3:68201493-68201512 | None:intergenic | 35.0% | |
| AGTTTATGACTACTGACGTA+CGG | - | chr6_3:68201528-68201547 | Msa0957400:intron | 35.0% | |
| CAGGTATCTACAACCTTATA+AGG | + | chr6_3:68201560-68201579 | None:intergenic | 35.0% | |
| ! | CATTTAACTTTCCCTGAAAC+AGG | + | chr6_3:68201579-68201598 | None:intergenic | 35.0% |
| GTTTCAGGGAAAGTTAAATG+AGG | - | chr6_3:68201579-68201598 | Msa0957400:intron | 35.0% | |
| TTAAGCTGTCTATCCAAACA+TGG | - | chr6_3:68202011-68202030 | Msa0957400:intron | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | + | chr6_3:68202027-68202046 | None:intergenic | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | - | chr6_3:68202025-68202044 | Msa0957400:intron | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | + | chr6_3:68202053-68202072 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr6_3:68202240-68202259 | Msa0957400:intron | 35.0% | |
| !!! | CTTTTTTTTTTGTGGTGGCT+GGG | + | chr6_3:68202275-68202294 | None:intergenic | 35.0% |
| !!! | TCTTTTTTTTTTGTGGTGGC+TGG | + | chr6_3:68202276-68202295 | None:intergenic | 35.0% |
| TGAGCAAATACAGAGAGATA+AGG | + | chr6_3:68202312-68202331 | None:intergenic | 35.0% | |
| CGAGGACAGTAAAATATTCA+TGG | + | chr6_3:68202416-68202435 | None:intergenic | 35.0% | |
| ! | TTCTCTTTTTCTTTTCGACG+AGG | + | chr6_3:68202434-68202453 | None:intergenic | 35.0% |
| GATCTTCTTACTGATCTCTT+TGG | - | chr6_3:68202477-68202496 | Msa0957400:intron | 35.0% | |
| GCTGAAGGAAATAGAGATAA+AGG | - | chr6_3:68202599-68202618 | Msa0957400:intron | 35.0% | |
| GCATACATTCATGTACAAGT+GGG | + | chr6_3:68202859-68202878 | None:intergenic | 35.0% | |
| TGCATACATTCATGTACAAG+TGG | + | chr6_3:68202860-68202879 | None:intergenic | 35.0% | |
| ACCTCTTTCTGTAACTGTTA+TGG | + | chr6_3:68203112-68203131 | None:intergenic | 35.0% | |
| AATTCCTTCACTTCCTACAA+AGG | - | chr6_3:68203134-68203153 | Msa0957400:intron | 35.0% | |
| TCTTATATTACAGCTGCTTC+TGG | + | chr6_3:68203180-68203199 | None:intergenic | 35.0% | |
| GAGCACCTTCAAAAACTAAA+AGG | + | chr6_3:68203356-68203375 | None:intergenic | 35.0% | |
| GGGGAATGAGCAATTCTAAA+TGG | + | chr6_3:68198479-68198498 | None:intergenic | 40.0% | |
| CGCATAATCCTAGCTAGATT+AGG | - | chr6_3:68198721-68198740 | Msa0957400:intron | 40.0% | |
| ATGGAATCATAGGTCCTTTG+TGG | + | chr6_3:68199013-68199032 | None:intergenic | 40.0% | |
| ! | AAAGGTCATCTCTGTCGATT+AGG | - | chr6_3:68199079-68199098 | Msa0957400:intron | 40.0% |
| !! | GCATTTGTTGTTGGGTTTCA+TGG | - | chr6_3:68199129-68199148 | Msa0957400:intron | 40.0% |
| ACGCAACCACCTTTATATAG+GGG | + | chr6_3:68199174-68199193 | None:intergenic | 40.0% | |
| GTACGCAACCACCTTTATAT+AGG | + | chr6_3:68199176-68199195 | None:intergenic | 40.0% | |
| ! | TAAGTGGTTTTCCAATGCGA+TGG | + | chr6_3:68199323-68199342 | None:intergenic | 40.0% |
| AAAGAAAGGCAAACGTGATC+TGG | + | chr6_3:68199387-68199406 | None:intergenic | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | + | chr6_3:68199756-68199775 | None:intergenic | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | - | chr6_3:68199860-68199879 | Msa0957400:intron | 40.0% | |
| ! | CCAGTGAACTTGTTTCCTTA+TGG | + | chr6_3:68199981-68200000 | None:intergenic | 40.0% |
| CCATAAGGAAACAAGTTCAC+TGG | - | chr6_3:68199978-68199997 | Msa0957400:intron | 40.0% | |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | - | chr6_3:68199991-68200010 | Msa0957400:intron | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | - | chr6_3:68199992-68200011 | Msa0957400:intron | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | - | chr6_3:68199993-68200012 | Msa0957400:intron | 40.0% |
| GTCTATCAACATTTCCCCAA+AGG | + | chr6_3:68200010-68200029 | None:intergenic | 40.0% | |
| ATAGACTTTGTGCCAACTGT+GGG | - | chr6_3:68200024-68200043 | Msa0957400:intron | 40.0% | |
| GTTGGTATATCTAGATTGGG+AGG | - | chr6_3:68200114-68200133 | Msa0957400:intron | 40.0% | |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | - | chr6_3:68200132-68200151 | Msa0957400:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr6_3:68200512-68200531 | Msa0957400:CDS | 40.0% |
| CAGAACAATGTCGATACTTC+TGG | - | chr6_3:68200560-68200579 | Msa0957400:CDS | 40.0% | |
| TTTGTCACACTTAGATCCGA+CGG | - | chr6_3:68200620-68200639 | Msa0957400:intron | 40.0% | |
| !!! | AGCGTGAGTTCTTGTTTTTC+CGG | - | chr6_3:68200645-68200664 | Msa0957400:intron | 40.0% |
| ! | TGAAGAAGCATATCAGCACT+TGG | + | chr6_3:68200674-68200693 | None:intergenic | 40.0% |
| GAAATGTGGTTCAAGACCTA+TGG | - | chr6_3:68200757-68200776 | Msa0957400:CDS | 40.0% | |
| ! | GAGAATGCAACCAGAACTTT+TGG | + | chr6_3:68200899-68200918 | None:intergenic | 40.0% |
| !! | GAATGTAATGGACATGTGTC+AGG | - | chr6_3:68201372-68201391 | Msa0957400:CDS | 40.0% |
| ! | AAGGTGCCTAAGATGTTGTT+TGG | - | chr6_3:68201484-68201503 | Msa0957400:intron | 40.0% |
| CGTACGGAAAAGTCCTTATA+AGG | - | chr6_3:68201544-68201563 | Msa0957400:intron | 40.0% | |
| AGGTTGTAGATACCTGTTTC+AGG | - | chr6_3:68201564-68201583 | Msa0957400:intron | 40.0% | |
| GGTTGTAGATACCTGTTTCA+GGG | - | chr6_3:68201565-68201584 | Msa0957400:intron | 40.0% | |
| TTAAACGCACATATGGGACA+AGG | + | chr6_3:68201701-68201720 | None:intergenic | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | - | chr6_3:68202054-68202073 | Msa0957400:intron | 40.0% | |
| GTTAAACCTGTTGACACAAC+CGG | - | chr6_3:68202096-68202115 | Msa0957400:intron | 40.0% | |
| ! | TTCTGACCCGAGTATTTTTC+AGG | - | chr6_3:68202161-68202180 | Msa0957400:intron | 40.0% |
| GCATAATATATGCAAGGTCC+GGG | - | chr6_3:68202241-68202260 | Msa0957400:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr6_3:68202242-68202261 | Msa0957400:intron | 40.0% | |
| ! | ACGAGTAAATGCGTGTCATT+TGG | - | chr6_3:68202716-68202735 | Msa0957400:intron | 40.0% |
| GCCATAACAGTTACAGAAAG+AGG | - | chr6_3:68203108-68203127 | Msa0957400:intron | 40.0% | |
| TGCAAAACAGCTTCCTTTGT+AGG | + | chr6_3:68203150-68203169 | None:intergenic | 40.0% | |
| GCTCACTCTAATACACCATC+AGG | - | chr6_3:68198249-68198268 | Msa0957400:CDS | 45.0% | |
| !!! | ACTCACGCTCGGCTTTTTTA+CGG | + | chr6_3:68198500-68198519 | None:intergenic | 45.0% |
| GTGGCCCAATCTGGAAAAAA+AGG | + | chr6_3:68198678-68198697 | None:intergenic | 45.0% | |
| ACATGTATTGTGGCCCAATC+TGG | + | chr6_3:68198687-68198706 | None:intergenic | 45.0% | |
| AGGATTATGCGTTATTGGGC+CGG | + | chr6_3:68198712-68198731 | None:intergenic | 45.0% | |
| ! | GACAGAGATGACCTTTTGTG+CGG | + | chr6_3:68199075-68199094 | None:intergenic | 45.0% |
| GTTGTTGGGTTTCATGGGAA+CGG | - | chr6_3:68199135-68199154 | Msa0957400:intron | 45.0% | |
| TGAGCTCCCCTATATAAAGG+TGG | - | chr6_3:68199165-68199184 | Msa0957400:intron | 45.0% | |
| ! | TGCGTAACTTGTCCTTGCAA+TGG | + | chr6_3:68199198-68199217 | None:intergenic | 45.0% |
| GATAGAAGAGTCGGTGAAAG+TGG | + | chr6_3:68199228-68199247 | None:intergenic | 45.0% | |
| GTTCACTGCAGAGGAGAAAT+CGG | + | chr6_3:68199290-68199309 | None:intergenic | 45.0% | |
| TTTCTCCTCTGCAGTGAACT+AGG | - | chr6_3:68199291-68199310 | Msa0957400:intron | 45.0% | |
| !! | GTTCGATTTTAGAGGACGGT+GGG | - | chr6_3:68199469-68199488 | Msa0957400:intron | 45.0% |
| !! | TTCGATTTTAGAGGACGGTG+GGG | - | chr6_3:68199470-68199489 | Msa0957400:intron | 45.0% |
| ! | CGCATTTTTGCCACTAATGC+AGG | + | chr6_3:68199600-68199619 | None:intergenic | 45.0% |
| GTGGCAAAAATGCGAGTATC+TGG | - | chr6_3:68199606-68199625 | Msa0957400:intron | 45.0% | |
| TACTAGCGACGCCAACATTT+AGG | - | chr6_3:68199814-68199833 | Msa0957400:intron | 45.0% | |
| GATAGACTTTGTGCCAACTG+TGG | - | chr6_3:68200023-68200042 | Msa0957400:intron | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | + | chr6_3:68200072-68200091 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | - | chr6_3:68200072-68200091 | Msa0957400:intron | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | + | chr6_3:68200102-68200121 | None:intergenic | 45.0% | |
| ATGTCGATACTTCTGGCATG+AGG | - | chr6_3:68200567-68200586 | Msa0957400:CDS | 45.0% | |
| TGAGGTTTGATGCCAATGCA+AGG | - | chr6_3:68200585-68200604 | Msa0957400:CDS | 45.0% | |
| AGCTAATGCAGTCCTTGCAT+TGG | + | chr6_3:68200600-68200619 | None:intergenic | 45.0% | |
| GCATATCAGCACTTGGATTC+CGG | + | chr6_3:68200667-68200686 | None:intergenic | 45.0% | |
| !! | GCAATGTGTGCTGATTTGCA+TGG | + | chr6_3:68200862-68200881 | None:intergenic | 45.0% |
| GGATCAAGCCGATGTCATTA+AGG | - | chr6_3:68200993-68201012 | Msa0957400:intron | 45.0% | |
| AACAAATGCATCACCAGCAC+CGG | + | chr6_3:68202118-68202137 | None:intergenic | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr6_3:68202120-68202139 | Msa0957400:intron | 45.0% |
| TACCAACTGAGCTAAGCTCA+CGG | + | chr6_3:68202213-68202232 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr6_3:68202213-68202232 | Msa0957400:intron | 45.0% |
| CAAGCAACGTCTTCAACACA+AGG | + | chr6_3:68202507-68202526 | None:intergenic | 45.0% | |
| CTGGGATGAATTCTTGCTGA+AGG | - | chr6_3:68202584-68202603 | Msa0957400:intron | 45.0% | |
| GCTTCCTTTGTAGGAAGTGA+AGG | + | chr6_3:68203141-68203160 | None:intergenic | 45.0% | |
| !!! | AAAAAAAATAATATTTTTAC+TGG | - | chr6_3:68202558-68202577 | Msa0957400:intron | 5.0% |
| !!! | TTATATTATATATATTTTCT+TGG | - | chr6_3:68203034-68203053 | Msa0957400:intron | 5.0% |
| !!! | TCACGCTCGGCTTTTTTACG+GGG | + | chr6_3:68198498-68198517 | None:intergenic | 50.0% |
| !!! | CTCACGCTCGGCTTTTTTAC+GGG | + | chr6_3:68198499-68198518 | None:intergenic | 50.0% |
| CAGCTTCAGTTAACTCACGG+AGG | - | chr6_3:68198565-68198584 | Msa0957400:intron | 50.0% | |
| TGGGCCACAATACATGTCAC+CGG | - | chr6_3:68198690-68198709 | Msa0957400:intron | 50.0% | |
| ! | TCTGTCGATTAGGACCGTTG+AGG | - | chr6_3:68199089-68199108 | Msa0957400:intron | 50.0% |
| TTCTCTGTAGAAGCTCCCTG+TGG | - | chr6_3:68199251-68199270 | Msa0957400:intron | 50.0% | |
| GCTATCCTAGTTCACTGCAG+AGG | + | chr6_3:68199299-68199318 | None:intergenic | 50.0% | |
| CTAGGATAGCTCCATCGCAT+TGG | - | chr6_3:68199309-68199328 | Msa0957400:intron | 50.0% | |
| !! | GGTTCGATTTTAGAGGACGG+TGG | - | chr6_3:68199468-68199487 | Msa0957400:intron | 50.0% |
| GACTACGGATCCTGCATTAG+TGG | - | chr6_3:68199587-68199606 | Msa0957400:intron | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | + | chr6_3:68200064-68200083 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | - | chr6_3:68200069-68200088 | Msa0957400:intron | 50.0% | |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | - | chr6_3:68202044-68202063 | Msa0957400:intron | 50.0% |
| TGTGCAGGAATTTCGAGGCA+GGG | - | chr6_3:68202059-68202078 | Msa0957400:intron | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+GGG | + | chr6_3:68202212-68202231 | None:intergenic | 50.0% | |
| TGGGCCGGTGACATGTATTG+TGG | + | chr6_3:68198697-68198716 | None:intergenic | 55.0% | |
| AGCGCACGAGAGATCCTTTG+TGG | + | chr6_3:68199049-68199068 | None:intergenic | 55.0% | |
| CAAAGGATCTCTCGTGCGCT+TGG | - | chr6_3:68199049-68199068 | Msa0957400:intron | 55.0% | |
| GGTGGTTGCGTACCATTGCA+AGG | - | chr6_3:68199183-68199202 | Msa0957400:intron | 55.0% | |
| !! | GGCAGAGGCATTTCTCCACA+GGG | + | chr6_3:68199269-68199288 | None:intergenic | 55.0% |
| TGCAGAGGAGAAATCGGCAG+AGG | + | chr6_3:68199284-68199303 | None:intergenic | 55.0% | |
| GACTTTGTGCCAACTGTGGG+AGG | - | chr6_3:68200027-68200046 | Msa0957400:intron | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | - | chr6_3:68200096-68200115 | Msa0957400:intron | 55.0% | |
| CAAGAACTCACGCTCACCGT+CGG | + | chr6_3:68200639-68200658 | None:intergenic | 55.0% | |
| TATGCCATTCCGAGCAGCCT+CGG | + | chr6_3:68200962-68200981 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | - | chr6_3:68202058-68202077 | Msa0957400:intron | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | - | chr6_3:68202063-68202082 | Msa0957400:intron | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | - | chr6_3:68202066-68202085 | Msa0957400:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | + | chr6_3:68202211-68202230 | None:intergenic | 55.0% | |
| !! | CGGCAGAGGCATTTCTCCAC+AGG | + | chr6_3:68199270-68199289 | None:intergenic | 60.0% |
| AGCGACACTCCTCCCACAGT+TGG | + | chr6_3:68200039-68200058 | None:intergenic | 60.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | + | chr6_3:68200090-68200109 | None:intergenic | 60.0% | |
| GTGCAGTGTCCGACACGACA+CGG | + | chr6_3:68201405-68201424 | None:intergenic | 60.0% | |
| !! | CCAGCACCGGTTGTGTCAAC+AGG | + | chr6_3:68202105-68202124 | None:intergenic | 60.0% |
| CCTGTTGACACAACCGGTGC+TGG | - | chr6_3:68202102-68202121 | Msa0957400:intron | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | - | chr6_3:68202208-68202227 | Msa0957400:intron | 60.0% | |
| CGTGCGCTTGGCCGCACAAA+AGG | - | chr6_3:68199061-68199080 | Msa0957400:intron | 65.0% | |
| GGCATTATGGCCGTCTGCCG+AGG | - | chr6_3:68200942-68200961 | Msa0957400:intron | 65.0% | |
| TTCCGAGCAGCCTCGGCAGA+CGG | + | chr6_3:68200955-68200974 | None:intergenic | 65.0% | |
| TCTGCCGAGGCTGCTCGGAA+TGG | - | chr6_3:68200955-68200974 | Msa0957400:intron | 65.0% | |
| GGGTCAGTGCCGTGTCGTGT+CGG | - | chr6_3:68201393-68201412 | Msa0957400:CDS | 65.0% | |
| GGTGGCTGGGATTCGAACCC+CGG | + | chr6_3:68202262-68202281 | None:intergenic | 65.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | - | chr6_3:68200050-68200069 | Msa0957400:intron | 70.0% |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | - | chr6_3:68200044-68200063 | Msa0957400:intron | 75.0% |
| GGCCGTCTGCCGAGGCTGCT+CGG | - | chr6_3:68200950-68200969 | Msa0957400:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 68198018 | 68203420 | 68198018 | ID=Msa0957400;Name=Msa0957400 |
| chr6_3 | mRNA | 68198018 | 68203420 | 68198018 | ID=Msa0957400-mRNA-1;Parent=Msa0957400;Name=Msa0957400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=228|0.6|0.66|1|1|1|6|223|278 |
| chr6_3 | exon | 68198018 | 68198378 | 68198018 | ID=Msa0957400-mRNA-1:exon:12574;Parent=Msa0957400-mRNA-1 |
| chr6_3 | exon | 68200173 | 68200274 | 68200173 | ID=Msa0957400-mRNA-1:exon:12573;Parent=Msa0957400-mRNA-1 |
| chr6_3 | exon | 68200424 | 68200621 | 68200424 | ID=Msa0957400-mRNA-1:exon:12572;Parent=Msa0957400-mRNA-1 |
| chr6_3 | exon | 68200711 | 68200875 | 68200711 | ID=Msa0957400-mRNA-1:exon:12571;Parent=Msa0957400-mRNA-1 |
| chr6_3 | exon | 68201280 | 68201488 | 68201280 | ID=Msa0957400-mRNA-1:exon:12570;Parent=Msa0957400-mRNA-1 |
| chr6_3 | exon | 68203168 | 68203420 | 68203168 | ID=Msa0957400-mRNA-1:exon:12569;Parent=Msa0957400-mRNA-1 |
| chr6_3 | five_prime_UTR | 68203193 | 68203420 | 68203193 | ID=Msa0957400-mRNA-1:five_prime_utr;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68203168 | 68203192 | 68203168 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68201280 | 68201488 | 68201280 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68200711 | 68200875 | 68200711 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68200424 | 68200621 | 68200424 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68200173 | 68200274 | 68200173 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | CDS | 68198241 | 68198378 | 68198241 | ID=Msa0957400-mRNA-1:cds;Parent=Msa0957400-mRNA-1 |
| chr6_3 | three_prime_UTR | 68198018 | 68198240 | 68198018 | ID=Msa0957400-mRNA-1:three_prime_utr;Parent=Msa0957400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
