Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892240 | XP_003620724.3 | 75.645 | 349 | 14 | 3 | 1 | 278 | 1 | 349 | 2.22e-175 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892240 | sp|Q9FLH8|SCRK7_ARATH | 61.300 | 323 | 57 | 2 | 18 | 272 | 16 | 338 | 4.35e-132 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892240 | A0A396HJ77 | 75.645 | 349 | 14 | 3 | 1 | 278 | 1 | 349 | 1.06e-175 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027430 | Msa0892240 | 0.809404 | 1.924356e-50 | -8.615850e-47 |
| Msa0165340 | Msa0892240 | 0.818903 | 1.537572e-52 | -8.615850e-47 |
| Msa0892240 | Msa0957400 | 0.857413 | 1.660129e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892240 | MtrunA17_Chr6g0474331 | 75.645 | 349 | 14 | 3 | 1 | 278 | 1 | 349 | 2.04e-179 | 498 |
| Msa0892240 | MtrunA17_Chr1g0204101 | 66.168 | 334 | 44 | 3 | 6 | 271 | 5 | 337 | 7.92e-147 | 415 |
| Msa0892240 | MtrunA17_Chr5g0434971 | 60.063 | 318 | 58 | 3 | 23 | 272 | 65 | 381 | 1.86e-116 | 339 |
| Msa0892240 | MtrunA17_Chr1g0183241 | 56.494 | 308 | 75 | 3 | 17 | 271 | 102 | 403 | 4.38e-107 | 316 |
| Msa0892240 | MtrunA17_Chr1g0188291 | 50.949 | 316 | 85 | 4 | 25 | 272 | 8 | 321 | 5.11e-104 | 305 |
| Msa0892240 | MtrunA17_Chr4g0033631 | 50.779 | 321 | 88 | 4 | 23 | 275 | 13 | 331 | 2.30e-103 | 304 |
| Msa0892240 | MtrunA17_Chr2g0329451 | 50.000 | 318 | 89 | 4 | 23 | 272 | 12 | 327 | 6.55e-103 | 303 |
| Msa0892240 | MtrunA17_Chr1g0183661 | 54.122 | 279 | 62 | 3 | 40 | 257 | 3 | 276 | 1.51e-91 | 273 |
| Msa0892240 | MtrunA17_Chr1g0171921 | 49.693 | 326 | 87 | 7 | 17 | 270 | 175 | 495 | 2.15e-83 | 259 |
| Msa0892240 | MtrunA17_Chr1g0177771 | 49.841 | 315 | 90 | 6 | 17 | 270 | 245 | 552 | 1.42e-81 | 255 |
| Msa0892240 | MtrunA17_Chr1g0177321 | 46.440 | 323 | 80 | 6 | 17 | 270 | 171 | 469 | 5.98e-71 | 226 |
| Msa0892240 | MtrunA17_Chr1g0176221 | 55.288 | 208 | 70 | 4 | 86 | 271 | 1 | 207 | 1.42e-69 | 214 |
| Msa0892240 | MtrunA17_Chr7g0246421 | 48.438 | 192 | 47 | 1 | 133 | 272 | 2 | 193 | 5.79e-54 | 173 |
| Msa0892240 | MtrunA17_Chr7g0246411 | 53.846 | 130 | 42 | 2 | 25 | 136 | 41 | 170 | 2.69e-38 | 132 |
| Msa0892240 | MtrunA17_Chr4g0020911 | 60.526 | 114 | 45 | 0 | 133 | 246 | 56 | 169 | 4.94e-37 | 130 |
| Msa0892240 | MtrunA17_Chr5g0419371 | 29.431 | 299 | 156 | 8 | 13 | 259 | 192 | 487 | 2.29e-28 | 113 |
| Msa0892240 | MtrunA17_Chr4g0008441 | 30.698 | 215 | 118 | 3 | 25 | 208 | 93 | 307 | 1.08e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892240 | AT5G51830.2 | 61.300 | 323 | 57 | 2 | 18 | 272 | 16 | 338 | 4.42e-133 | 380 |
| Msa0892240 | AT5G51830.1 | 61.300 | 323 | 57 | 2 | 18 | 272 | 16 | 338 | 4.42e-133 | 380 |
| Msa0892240 | AT1G66430.1 | 54.830 | 352 | 82 | 4 | 2 | 277 | 34 | 384 | 2.20e-120 | 350 |
| Msa0892240 | AT4G10260.1 | 53.548 | 310 | 74 | 4 | 23 | 264 | 4 | 311 | 3.19e-106 | 311 |
| Msa0892240 | AT3G59480.1 | 50.789 | 317 | 86 | 4 | 24 | 272 | 9 | 323 | 5.47e-103 | 303 |
| Msa0892240 | AT1G06020.1 | 50.314 | 318 | 88 | 3 | 25 | 274 | 10 | 325 | 1.32e-102 | 303 |
| Msa0892240 | AT2G31390.1 | 50.316 | 316 | 87 | 4 | 25 | 272 | 9 | 322 | 6.21e-101 | 298 |
| Msa0892240 | AT1G06030.1 | 49.375 | 320 | 92 | 4 | 21 | 272 | 7 | 324 | 2.59e-100 | 296 |
| Msa0892240 | AT1G69200.1 | 31.111 | 225 | 124 | 4 | 51 | 245 | 246 | 469 | 1.77e-27 | 111 |
| Msa0892240 | AT3G54090.1 | 29.167 | 288 | 146 | 7 | 25 | 255 | 103 | 389 | 8.31e-27 | 108 |
| Msa0892240 | AT1G50390.1 | 40.714 | 140 | 62 | 3 | 154 | 272 | 1 | 140 | 1.79e-24 | 96.3 |
Find 64 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATAGTCGCTTCGTTTA+AGG | 0.109335 | 6_1:-71245058 | None:intergenic |
| CATAATGCCAATCTTAAATT+TGG | 0.189545 | 6_1:-71247931 | None:intergenic |
| CAAATTTAAGATTGGCATTA+TGG | 0.194373 | 6_1:+71247932 | Msa0892240:CDS |
| TTGAATAAAGAAGAAATTAA+TGG | 0.201929 | 6_1:-71245164 | None:intergenic |
| TGCTGTTGGTATATCTAAAT+TGG | 0.213299 | 6_1:+71247113 | Msa0892240:CDS |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6_1:+71247974 | Msa0892240:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6_1:+71246995 | Msa0892240:CDS |
| TTAAACTAATTGAGCCAAAA+TGG | 0.312735 | 6_1:-71247831 | None:intergenic |
| TCTTATATTACAGCTGCTTC+TGG | 0.321751 | 6_1:-71250182 | None:intergenic |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6_1:+71246994 | Msa0892240:CDS |
| CCAGTGAACTTGTTTCCTTA+TGG | 0.328368 | 6_1:-71246981 | None:intergenic |
| TGCAAAACAGCTTCCTTTGT+AGG | 0.347798 | 6_1:-71250152 | None:intergenic |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6_1:-71250114 | None:intergenic |
| CAGAACAATGTCGATACTTC+TGG | 0.361492 | 6_1:+71247563 | Msa0892240:intron |
| GAGAATGCAACCAGAACTTT+TGG | 0.364359 | 6_1:-71247899 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.375368 | 6_1:+71247889 | Msa0892240:CDS |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6_1:-71247667 | None:intergenic |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6_1:+71247996 | Msa0892240:CDS |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6_1:+71247953 | Msa0892240:CDS |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6_1:-71248209 | None:intergenic |
| ATACGATCCAAATTTAAGAT+TGG | 0.426939 | 6_1:+71247924 | Msa0892240:CDS |
| AAGAAATTAATGGACCGAAA+AGG | 0.442736 | 6_1:-71245154 | None:intergenic |
| AGAAATTAATGGACCGAAAA+GGG | 0.457687 | 6_1:-71245153 | None:intergenic |
| GCTGTTGGTATATCTAAATT+GGG | 0.462847 | 6_1:+71247114 | Msa0892240:CDS |
| GCTCACTCTAATACCCCATC+AGG | 0.482096 | 6_1:+71245287 | Msa0892240:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6_1:+71247975 | Msa0892240:CDS |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6_1:-71247955 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6_1:-71247072 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6_1:+71247053 | Msa0892240:CDS |
| TCTTAGAAAAGAAGACCATA+AGG | 0.516761 | 6_1:+71246966 | Msa0892240:CDS |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6_1:+71247958 | Msa0892240:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.520400 | 6_1:-71247106 | None:intergenic |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6_1:+71247072 | Msa0892240:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6_1:+71246996 | Msa0892240:CDS |
| GCTTCCTTTGTAGGAAGTGA+AGG | 0.529815 | 6_1:-71250143 | None:intergenic |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6_1:+71250113 | Msa0892240:CDS |
| AGCTAATGCAGTCCTTGCAT+TGG | 0.532620 | 6_1:-71247600 | None:intergenic |
| GGCATTATGGCCGTCTGCCG+AGG | 0.533060 | 6_1:+71247945 | Msa0892240:CDS |
| TGATAATATTTATGAATGAA+AGG | 0.533996 | 6_1:-71245126 | None:intergenic |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6_1:+71247709 | Msa0892240:CDS |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6_1:-71247064 | None:intergenic |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6_1:-71247962 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6_1:-71248004 | None:intergenic |
| CCATAAGGAAACAAGTTCAC+TGG | 0.556670 | 6_1:+71246981 | Msa0892240:CDS |
| TGAAGAAGCATATCAGCACT+TGG | 0.560755 | 6_1:-71247674 | None:intergenic |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6_1:-71247102 | None:intergenic |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6_1:+71247099 | Msa0892240:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6_1:-71247010 | None:intergenic |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6_1:-71247039 | None:intergenic |
| AATTCCTTCACTTCCTACAA+AGG | 0.581630 | 6_1:+71250139 | Msa0892240:CDS |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6_1:-71247090 | None:intergenic |
| TGAGGTTTGATGCCAATGCA+AGG | 0.607359 | 6_1:+71247588 | Msa0892240:CDS |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6_1:+71247027 | Msa0892240:CDS |
| CAAGAACTCGCGCTCGCCGT+CGG | 0.617107 | 6_1:-71247639 | None:intergenic |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6_1:+71247030 | Msa0892240:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6_1:+71247026 | Msa0892240:CDS |
| CATGTATATACAGATAAGTG+AGG | 0.626485 | 6_1:+71248154 | Msa0892240:intron |
| GTTGGTATATCTAAATTGGG+AGG | 0.634166 | 6_1:+71247117 | Msa0892240:CDS |
| ATGTCGATACTTCTGGCATG+AGG | 0.638705 | 6_1:+71247570 | Msa0892240:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6_1:+71247047 | Msa0892240:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6_1:+71247075 | Msa0892240:CDS |
| TTTGTCACACTTAGATCCGA+CGG | 0.654718 | 6_1:+71247623 | Msa0892240:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6_1:-71247862 | None:intergenic |
| GTATATACAGATAAGTGAGG+AGG | 0.677503 | 6_1:+71248157 | Msa0892240:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATCTTTTTTTTTTTTG+TGG | - | chr6_1:71249286-71249305 | None:intergenic | 10.0% |
| !! | TGATAATATTTATGAATGAA+AGG | - | chr6_1:71245129-71245148 | None:intergenic | 15.0% |
| !! | TTGAATAAAGAAGAAATTAA+TGG | - | chr6_1:71245167-71245186 | None:intergenic | 15.0% |
| !! | TTGAACTAATATCTATATAT+AGG | + | chr6_1:71245895-71245914 | Msa0892240:intron | 15.0% |
| !!! | GTTACAATAATTTTTTACTA+AGG | - | chr6_1:71249385-71249404 | None:intergenic | 15.0% |
| !! | TAGTAAAAAATTATTGTAAC+CGG | + | chr6_1:71249385-71249404 | Msa0892240:intron | 15.0% |
| !!! | AAAAGAGAATATTATTTTAC+TGG | + | chr6_1:71249450-71249469 | Msa0892240:intron | 15.0% |
| !!! | GAGATTATTTTTTATACAAA+TGG | + | chr6_1:71249638-71249657 | Msa0892240:intron | 15.0% |
| !!! | GTTTTTGTTTGAGAATTTTA+AGG | + | chr6_1:71245354-71245373 | Msa0892240:intron | 20.0% |
| !! | CTATAGTTAATCAATTTAGT+TGG | + | chr6_1:71245760-71245779 | Msa0892240:intron | 20.0% |
| !! | TTATGAATTATGGAATCATA+GGG | - | chr6_1:71245989-71246008 | None:intergenic | 20.0% |
| !! | ATTATGAATTATGGAATCAT+AGG | - | chr6_1:71245990-71246009 | None:intergenic | 20.0% |
| !!! | TTTTCATATCAACTACTAAA+AGG | - | chr6_1:71246447-71246466 | None:intergenic | 20.0% |
| !!! | AGTAGTTGATATGAAAAATT+TGG | + | chr6_1:71246450-71246469 | Msa0892240:intron | 20.0% |
| !! | TTCCTTATTATTTGTGTATT+AGG | + | chr6_1:71247496-71247515 | Msa0892240:intron | 20.0% |
| !! | AACCTAATACACAAATAATA+AGG | - | chr6_1:71247501-71247520 | None:intergenic | 20.0% |
| !! | TTATTATTTGTGTATTAGGT+TGG | + | chr6_1:71247500-71247519 | Msa0892240:intron | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | + | chr6_1:71247746-71247765 | Msa0892240:intron | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | - | chr6_1:71247779-71247798 | None:intergenic | 20.0% |
| !! | ACATCATATACAAATTGATA+TGG | - | chr6_1:71248320-71248339 | None:intergenic | 20.0% |
| !! | ATGCAAATAATTGAATGTAA+TGG | + | chr6_1:71248363-71248382 | Msa0892240:intron | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | + | chr6_1:71248726-71248745 | Msa0892240:intron | 20.0% |
| !! | TATTACTAATAACACCAATT+TGG | - | chr6_1:71248743-71248762 | None:intergenic | 20.0% |
| !!! | GTGTTATTAGTAATAAGTTA+TGG | + | chr6_1:71248748-71248767 | Msa0892240:intron | 20.0% |
| !! | TTATGGAATTATAGTCTATT+TGG | + | chr6_1:71248765-71248784 | Msa0892240:intron | 20.0% |
| !!! | TATCTTTTTTTTTTTTGTGG+TGG | - | chr6_1:71249283-71249302 | None:intergenic | 20.0% |
| !! | AGTAAAAAATTATTGTAACC+GGG | + | chr6_1:71249386-71249405 | Msa0892240:intron | 20.0% |
| !!! | TTAATATTTTTACTGGTTTC+TGG | + | chr6_1:71249570-71249589 | Msa0892240:intron | 20.0% |
| !!! | TAATATTTTTACTGGTTTCT+GGG | + | chr6_1:71249571-71249590 | Msa0892240:intron | 20.0% |
| !!! | ATTATATATATTTTCTTGGC+AGG | + | chr6_1:71250043-71250062 | Msa0892240:intron | 20.0% |
| !! | ATATTATCATCTACCCTTTT+CGG | + | chr6_1:71245140-71245159 | Msa0892240:five_prime_UTR | 25.0% |
| ! | TTAATAAAAAACAATGGAGG+TGG | - | chr6_1:71245265-71245284 | None:intergenic | 25.0% |
| ! | CCATTAATAAAAAACAATGG+AGG | - | chr6_1:71245268-71245287 | None:intergenic | 25.0% |
| !!! | CCTCCATTGTTTTTTATTAA+TGG | + | chr6_1:71245265-71245284 | Msa0892240:exon | 25.0% |
| ! | GAGCCATTAATAAAAAACAA+TGG | - | chr6_1:71245271-71245290 | None:intergenic | 25.0% |
| !!! | AGGATTTTATTTACCTATGT+TGG | + | chr6_1:71245374-71245393 | Msa0892240:intron | 25.0% |
| !!! | TAAATTTCTAGTTCCAACAT+AGG | - | chr6_1:71245390-71245409 | None:intergenic | 25.0% |
| ! | GAGAATAAGCAAAAACAAAT+GGG | + | chr6_1:71245594-71245613 | Msa0892240:intron | 25.0% |
| ! | AATCAATTTAGTTGGTTGAT+AGG | + | chr6_1:71245768-71245787 | Msa0892240:intron | 25.0% |
| ! | TTGTGGTCTATTATGAATTA+TGG | - | chr6_1:71245999-71246018 | None:intergenic | 25.0% |
| ! | TAATTCATAATAGACCACAA+AGG | + | chr6_1:71245999-71246018 | Msa0892240:intron | 25.0% |
| ! | TGATTGAATATACATTGATC+TGG | + | chr6_1:71246358-71246377 | Msa0892240:intron | 25.0% |
| !!! | AAAATTTGGTTCGATTTTAG+AGG | + | chr6_1:71246464-71246483 | Msa0892240:intron | 25.0% |
| ! | TCAAGATCATATAAAGTAAG+TGG | - | chr6_1:71246572-71246591 | None:intergenic | 25.0% |
| ! | ACTTTATATGATCTTGACTA+CGG | + | chr6_1:71246575-71246594 | Msa0892240:intron | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+TGG | + | chr6_1:71246834-71246853 | Msa0892240:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | + | chr6_1:71246907-71246926 | Msa0892240:intron | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | - | chr6_1:71247247-71247266 | None:intergenic | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | - | chr6_1:71247344-71247363 | None:intergenic | 25.0% |
| ! | TTGATTCATGACTTAAAACT+AGG | + | chr6_1:71247421-71247440 | Msa0892240:intron | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | + | chr6_1:71247798-71247817 | Msa0892240:intron | 25.0% |
| ! | TTAAACTAATTGAGCCAAAA+TGG | - | chr6_1:71247834-71247853 | None:intergenic | 25.0% |
| !! | ATACGATCCAAATTTAAGAT+TGG | + | chr6_1:71247924-71247943 | Msa0892240:CDS | 25.0% |
| ! | CATAATGCCAATCTTAAATT+TGG | - | chr6_1:71247934-71247953 | None:intergenic | 25.0% |
| !! | CAAATTTAAGATTGGCATTA+TGG | + | chr6_1:71247932-71247951 | Msa0892240:CDS | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | - | chr6_1:71248007-71248026 | None:intergenic | 25.0% |
| ! | AAATTATACACATGATGTAG+TGG | + | chr6_1:71248024-71248043 | Msa0892240:intron | 25.0% |
| !!! | TTTTTTCTAGTGAGCTTAAT+CGG | + | chr6_1:71248067-71248086 | Msa0892240:intron | 25.0% |
| ! | TACATGAAAAATACAACATC+AGG | - | chr6_1:71248140-71248159 | None:intergenic | 25.0% |
| ! | AAAACAACATCATCATCATT+AGG | - | chr6_1:71248212-71248231 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTGTTACTGA+AGG | + | chr6_1:71248257-71248276 | Msa0892240:intron | 25.0% |
| ! | AACTCTTAATTGTTACTGAA+GGG | + | chr6_1:71248258-71248277 | Msa0892240:intron | 25.0% |
| !! | TTTAGATTGAAAGGTATGAT+CGG | - | chr6_1:71248430-71248449 | None:intergenic | 25.0% |
| ! | GTTATCAGATCTTATAACAA+AGG | + | chr6_1:71248468-71248487 | Msa0892240:intron | 25.0% |
| ! | ACTTATTTAAACGCACATAT+GGG | - | chr6_1:71248710-71248729 | None:intergenic | 25.0% |
| ! | AACTTATTTAAACGCACATA+TGG | - | chr6_1:71248711-71248730 | None:intergenic | 25.0% |
| !! | CTTATCATAAAGTGTTTATG+TGG | - | chr6_1:71248972-71248991 | None:intergenic | 25.0% |
| ! | AAACAAACCTGAAAAATACT+CGG | - | chr6_1:71249174-71249193 | None:intergenic | 25.0% |
| ! | GTAAAAAATTATTGTAACCG+GGG | + | chr6_1:71249387-71249406 | Msa0892240:intron | 25.0% |
| ! | AGAGATAAAGGAACTAAAAT+TGG | + | chr6_1:71249616-71249635 | Msa0892240:intron | 25.0% |
| !!! | TAAATTATCATTTGCTGTTC+AGG | + | chr6_1:71249664-71249683 | Msa0892240:intron | 25.0% |
| !!! | AAATTATCATTTGCTGTTCA+GGG | + | chr6_1:71249665-71249684 | Msa0892240:intron | 25.0% |
| !! | TTGTATTTTGCAAATGTATG+TGG | + | chr6_1:71250089-71250108 | Msa0892240:CDS | 25.0% |
| ! | TTGAGCTATTAATATAGCTT+AGG | + | chr6_1:71250237-71250256 | Msa0892240:intron | 25.0% |
| ! | AGAAATTAATGGACCGAAAA+GGG | - | chr6_1:71245156-71245175 | None:intergenic | 30.0% |
| ! | AAGAAATTAATGGACCGAAA+AGG | - | chr6_1:71245157-71245176 | None:intergenic | 30.0% |
| AAAGAAGAAAAAACCTGATG+GGG | - | chr6_1:71245303-71245322 | None:intergenic | 30.0% | |
| GAAAGAAGAAAAAACCTGAT+GGG | - | chr6_1:71245304-71245323 | None:intergenic | 30.0% | |
| AGAAAGAAGAAAAAACCTGA+TGG | - | chr6_1:71245305-71245324 | None:intergenic | 30.0% | |
| CGAGAATAAGCAAAAACAAA+TGG | + | chr6_1:71245593-71245612 | Msa0892240:intron | 30.0% | |
| !!! | TTTGATGTGTCCTTTTTTTC+CGG | + | chr6_1:71245669-71245688 | Msa0892240:intron | 30.0% |
| ATTACGAATCATGGAATCAT+AGG | - | chr6_1:71246026-71246045 | None:intergenic | 30.0% | |
| ATCAACGTAAAGTGTATAAG+TGG | - | chr6_1:71246342-71246361 | None:intergenic | 30.0% | |
| GACTATCAATGACTAAAGAA+AGG | - | chr6_1:71246404-71246423 | None:intergenic | 30.0% | |
| TTAACAGCTTATATGAGAAC+AGG | + | chr6_1:71246677-71246696 | Msa0892240:intron | 30.0% | |
| CTTATATGAGAACAGGTTTA+TGG | + | chr6_1:71246684-71246703 | Msa0892240:intron | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | - | chr6_1:71246831-71246850 | None:intergenic | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | - | chr6_1:71246917-71246936 | None:intergenic | 30.0% | |
| TCTTAGAAAAGAAGACCATA+AGG | + | chr6_1:71246966-71246985 | Msa0892240:CDS | 30.0% | |
| TGCTGTTGGTATATCTAAAT+TGG | + | chr6_1:71247113-71247132 | Msa0892240:CDS | 30.0% | |
| GCTGTTGGTATATCTAAATT+GGG | + | chr6_1:71247114-71247133 | Msa0892240:CDS | 30.0% | |
| ATGACTTAAAACTAGGTCTT+TGG | + | chr6_1:71247428-71247447 | Msa0892240:intron | 30.0% | |
| AGATGAATTTGGTTACATGT+TGG | + | chr6_1:71247526-71247545 | Msa0892240:intron | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | + | chr6_1:71247709-71247728 | Msa0892240:CDS | 30.0% | |
| GAATGGCATAATGAGTATAT+GGG | + | chr6_1:71247975-71247994 | Msa0892240:CDS | 30.0% | |
| CATGTATATACAGATAAGTG+AGG | + | chr6_1:71248154-71248173 | Msa0892240:intron | 30.0% | |
| !! | GAGATTACATTTTTGACTGA+AGG | + | chr6_1:71248179-71248198 | Msa0892240:CDS | 30.0% |
| AAGATCTGATAACTCATAGT+AGG | - | chr6_1:71248461-71248480 | None:intergenic | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr6_1:71248893-71248912 | None:intergenic | 30.0% |
| AATTTGGCACCACAATTATT+AGG | - | chr6_1:71249040-71249059 | None:intergenic | 30.0% | |
| AACAAACCTGAAAAATACTC+GGG | - | chr6_1:71249173-71249192 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr6_1:71249238-71249257 | Msa0892240:intron | 30.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCT+GGG | - | chr6_1:71249278-71249297 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+TGG | - | chr6_1:71249279-71249298 | None:intergenic | 30.0% |
| ! | TATTCATGGTTTTTAAACCC+CGG | - | chr6_1:71249407-71249426 | None:intergenic | 30.0% |
| ACTGAAGGAAATAGAGATAA+AGG | + | chr6_1:71249604-71249623 | Msa0892240:intron | 30.0% | |
| TTATACATCACAACGACAAA+TGG | - | chr6_1:71249948-71249967 | None:intergenic | 30.0% | |
| ATTTGTCGTTGTGATGTATA+AGG | + | chr6_1:71249947-71249966 | Msa0892240:intron | 30.0% | |
| TTTGTCGTTGTGATGTATAA+GGG | + | chr6_1:71249948-71249967 | Msa0892240:intron | 30.0% | |
| CTTTATAGTCGCTTCGTTTA+AGG | - | chr6_1:71245061-71245080 | None:intergenic | 35.0% | |
| AGACAAAGTTTGCATCTTTG+TGG | + | chr6_1:71245410-71245429 | Msa0892240:intron | 35.0% | |
| GACAAAGTTTGCATCTTTGT+GGG | + | chr6_1:71245411-71245430 | Msa0892240:intron | 35.0% | |
| ACAAAGTTTGCATCTTTGTG+GGG | + | chr6_1:71245412-71245431 | Msa0892240:intron | 35.0% | |
| !!! | TTTGTGGGGTTTTGGTTTAT+GGG | + | chr6_1:71245426-71245445 | Msa0892240:intron | 35.0% |
| GGGAATGAGCAATTCTAAAT+GGG | - | chr6_1:71245514-71245533 | None:intergenic | 35.0% | |
| AATACAAGTTAACTCACGCT+CGG | - | chr6_1:71245546-71245565 | None:intergenic | 35.0% | |
| AGCTAGGATTATGCGTTATT+GGG | - | chr6_1:71245720-71245739 | None:intergenic | 35.0% | |
| TAGCTAGGATTATGCGTTAT+TGG | - | chr6_1:71245721-71245740 | None:intergenic | 35.0% | |
| GCATAATCCTAGCTAGATTA+GGG | + | chr6_1:71245726-71245745 | Msa0892240:intron | 35.0% | |
| ATATAGTCCCTAATCTAGCT+AGG | - | chr6_1:71245736-71245755 | None:intergenic | 35.0% | |
| GTTAACTAGAGTTAGTAGCT+TGG | + | chr6_1:71245790-71245809 | Msa0892240:intron | 35.0% | |
| AGTACTCGAACATAAACAAC+TGG | + | chr6_1:71245822-71245841 | Msa0892240:intron | 35.0% | |
| AACAACTGGAGTTAGTTGAT+TGG | + | chr6_1:71245836-71245855 | Msa0892240:intron | 35.0% | |
| TTGTGGTCTATTACGAATCA+TGG | - | chr6_1:71246035-71246054 | None:intergenic | 35.0% | |
| TGATTCGTAATAGACCACAA+AGG | + | chr6_1:71246035-71246054 | Msa0892240:intron | 35.0% | |
| ATCATTGGAGATTACCTCAA+CGG | - | chr6_1:71246109-71246128 | None:intergenic | 35.0% | |
| AACAACAAATGCGAGATCAT+TGG | - | chr6_1:71246124-71246143 | None:intergenic | 35.0% | |
| !! | AATGATCTCGCATTTGTTGT+TGG | + | chr6_1:71246123-71246142 | Msa0892240:intron | 35.0% |
| !! | ATGATCTCGCATTTGTTGTT+GGG | + | chr6_1:71246124-71246143 | Msa0892240:intron | 35.0% |
| !! | CATTTGTTGTTGGGTTTCAT+GGG | + | chr6_1:71246133-71246152 | Msa0892240:intron | 35.0% |
| ATATGAGCTCCCCTATATAA+AGG | + | chr6_1:71246165-71246184 | Msa0892240:intron | 35.0% | |
| TACGCAACCACCTTTATATA+GGG | - | chr6_1:71246178-71246197 | None:intergenic | 35.0% | |
| !! | TTTGGTTCGATTTTAGAGGA+CGG | + | chr6_1:71246468-71246487 | Msa0892240:intron | 35.0% |
| ACACATCATGTAGTTACACA+AGG | + | chr6_1:71246533-71246552 | Msa0892240:intron | 35.0% | |
| TGAACTACTGATGCATTTCA+TGG | + | chr6_1:71246645-71246664 | Msa0892240:intron | 35.0% | |
| ATATGAGAACAGGTTTATGG+TGG | + | chr6_1:71246687-71246706 | Msa0892240:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | - | chr6_1:71246869-71246888 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | - | chr6_1:71247109-71247128 | None:intergenic | 35.0% | |
| GTTGGTATATCTAAATTGGG+AGG | + | chr6_1:71247117-71247136 | Msa0892240:CDS | 35.0% | |
| !! | TTCATCTGCTTTTATAGGCA+AGG | + | chr6_1:71247140-71247159 | Msa0892240:CDS | 35.0% |
| ! | CAGGCTACAATTTTCCATTT+TGG | + | chr6_1:71247817-71247836 | Msa0892240:intron | 35.0% |
| ATGAAGATTGCCAAAAGTTC+TGG | + | chr6_1:71247889-71247908 | Msa0892240:CDS | 35.0% | |
| GGAATGGCATAATGAGTATA+TGG | + | chr6_1:71247974-71247993 | Msa0892240:CDS | 35.0% | |
| GTATATACAGATAAGTGAGG+AGG | + | chr6_1:71248157-71248176 | Msa0892240:intron | 35.0% | |
| AATTGTTACTGAAGGGTCTA+AGG | + | chr6_1:71248265-71248284 | Msa0892240:intron | 35.0% | |
| ATTGTTACTGAAGGGTCTAA+GGG | + | chr6_1:71248266-71248285 | Msa0892240:intron | 35.0% | |
| GGGTTGTAGATATTACACAA+AGG | + | chr6_1:71248286-71248305 | Msa0892240:intron | 35.0% | |
| !! | AATGTAATGGACATGTGTCA+GGG | + | chr6_1:71248376-71248395 | Msa0892240:intron | 35.0% |
| GACTGACACTTTAGATTGAA+AGG | - | chr6_1:71248439-71248458 | None:intergenic | 35.0% | |
| GCTAATCCAAACAACATCTT+AGG | - | chr6_1:71248496-71248515 | None:intergenic | 35.0% | |
| AGTTTATGACTACTGACGTA+CGG | + | chr6_1:71248531-71248550 | Msa0892240:intron | 35.0% | |
| CAGGTATCTACAACCTTATA+AGG | - | chr6_1:71248563-71248582 | None:intergenic | 35.0% | |
| TTAAGCTGTCTATCCAAACA+TGG | + | chr6_1:71249014-71249033 | Msa0892240:intron | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | - | chr6_1:71249030-71249049 | None:intergenic | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | + | chr6_1:71249028-71249047 | Msa0892240:intron | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | - | chr6_1:71249056-71249075 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | + | chr6_1:71249243-71249262 | Msa0892240:intron | 35.0% | |
| TGAGCAAATACAGAGAGATA+AGG | - | chr6_1:71249317-71249336 | None:intergenic | 35.0% | |
| CGAGGACAGTAAAATATTCA+TGG | - | chr6_1:71249421-71249440 | None:intergenic | 35.0% | |
| ! | TTCTCTTTTTCTTTTCGACG+AGG | - | chr6_1:71249439-71249458 | None:intergenic | 35.0% |
| GATCTTCTTACTGATCTCTT+TGG | + | chr6_1:71249482-71249501 | Msa0892240:intron | 35.0% | |
| GCATACATTCATGTACAAGT+GGG | - | chr6_1:71249864-71249883 | None:intergenic | 35.0% | |
| TGCATACATTCATGTACAAG+TGG | - | chr6_1:71249865-71249884 | None:intergenic | 35.0% | |
| ACCTCTTTCTGTAACTGTTA+TGG | - | chr6_1:71250117-71250136 | None:intergenic | 35.0% | |
| AATTCCTTCACTTCCTACAA+AGG | + | chr6_1:71250139-71250158 | Msa0892240:CDS | 35.0% | |
| TCTTATATTACAGCTGCTTC+TGG | - | chr6_1:71250185-71250204 | None:intergenic | 35.0% | |
| ! | TTTGCATCTTTGTGGGGTTT+TGG | + | chr6_1:71245418-71245437 | Msa0892240:intron | 40.0% |
| !!! | CTTTGTGGGGTTTTGGTTTA+TGG | + | chr6_1:71245425-71245444 | Msa0892240:intron | 40.0% |
| CGGGAATGAGCAATTCTAAA+TGG | - | chr6_1:71245515-71245534 | None:intergenic | 40.0% | |
| !!! | TGTGTCCTTTTTTTCCGGAT+TGG | + | chr6_1:71245674-71245693 | Msa0892240:intron | 40.0% |
| !!! | GTGTCCTTTTTTTCCGGATT+GGG | + | chr6_1:71245675-71245694 | Msa0892240:intron | 40.0% |
| CGCATAATCCTAGCTAGATT+AGG | + | chr6_1:71245725-71245744 | Msa0892240:intron | 40.0% | |
| ATGGAATCATAGGTCCTTTG+TGG | - | chr6_1:71246016-71246035 | None:intergenic | 40.0% | |
| ! | AAAGGTCATCTCTGTCGATT+AGG | + | chr6_1:71246082-71246101 | Msa0892240:intron | 40.0% |
| !! | GCATTTGTTGTTGGGTTTCA+TGG | + | chr6_1:71246132-71246151 | Msa0892240:intron | 40.0% |
| ACGCAACCACCTTTATATAG+GGG | - | chr6_1:71246177-71246196 | None:intergenic | 40.0% | |
| GTACGCAACCACCTTTATAT+AGG | - | chr6_1:71246179-71246198 | None:intergenic | 40.0% | |
| GATAGAAGAGTCAGTGAAAG+TGG | - | chr6_1:71246231-71246250 | None:intergenic | 40.0% | |
| ! | TAAGTGGTTTTCCAATGCGA+TGG | - | chr6_1:71246326-71246345 | None:intergenic | 40.0% |
| AAAGAAAGGCAAACGTGATC+TGG | - | chr6_1:71246390-71246409 | None:intergenic | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | - | chr6_1:71246759-71246778 | None:intergenic | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | + | chr6_1:71246863-71246882 | Msa0892240:intron | 40.0% | |
| ! | CCAGTGAACTTGTTTCCTTA+TGG | - | chr6_1:71246984-71247003 | None:intergenic | 40.0% |
| CCATAAGGAAACAAGTTCAC+TGG | + | chr6_1:71246981-71247000 | Msa0892240:CDS | 40.0% | |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | + | chr6_1:71246994-71247013 | Msa0892240:CDS | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | + | chr6_1:71246995-71247014 | Msa0892240:CDS | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | + | chr6_1:71246996-71247015 | Msa0892240:CDS | 40.0% |
| GTCTATCAACATTTCCCCAA+AGG | - | chr6_1:71247013-71247032 | None:intergenic | 40.0% | |
| ATAGACTTTGTGCCAACTGT+GGG | + | chr6_1:71247027-71247046 | Msa0892240:CDS | 40.0% | |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | + | chr6_1:71247135-71247154 | Msa0892240:CDS | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | + | chr6_1:71247515-71247534 | Msa0892240:intron | 40.0% |
| CAGAACAATGTCGATACTTC+TGG | + | chr6_1:71247563-71247582 | Msa0892240:intron | 40.0% | |
| TTTGTCACACTTAGATCCGA+CGG | + | chr6_1:71247623-71247642 | Msa0892240:CDS | 40.0% | |
| ! | TGAAGAAGCATATCAGCACT+TGG | - | chr6_1:71247677-71247696 | None:intergenic | 40.0% |
| GAAATGTGGTTCAAGACCTA+TGG | + | chr6_1:71247760-71247779 | Msa0892240:intron | 40.0% | |
| ! | GAGAATGCAACCAGAACTTT+TGG | - | chr6_1:71247902-71247921 | None:intergenic | 40.0% |
| !! | GAATGTAATGGACATGTGTC+AGG | + | chr6_1:71248375-71248394 | Msa0892240:intron | 40.0% |
| ! | AAGGTGCCTAAGATGTTGTT+TGG | + | chr6_1:71248487-71248506 | Msa0892240:intron | 40.0% |
| CGTACGGAAAAGTCCTTATA+AGG | + | chr6_1:71248547-71248566 | Msa0892240:intron | 40.0% | |
| AGGTTGTAGATACCTGTTTC+AGG | + | chr6_1:71248567-71248586 | Msa0892240:intron | 40.0% | |
| GGTTGTAGATACCTGTTTCA+GGG | + | chr6_1:71248568-71248587 | Msa0892240:intron | 40.0% | |
| CATTTCACTTTCCCTGAAAC+AGG | - | chr6_1:71248582-71248601 | None:intergenic | 40.0% | |
| GTTTCAGGGAAAGTGAAATG+AGG | + | chr6_1:71248582-71248601 | Msa0892240:intron | 40.0% | |
| TTAAACGCACATATGGGACA+AGG | - | chr6_1:71248704-71248723 | None:intergenic | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | + | chr6_1:71249057-71249076 | Msa0892240:intron | 40.0% | |
| GTTAAACCTGTTGACACAAC+CGG | + | chr6_1:71249099-71249118 | Msa0892240:intron | 40.0% | |
| ! | TTCTGACCCGAGTATTTTTC+AGG | + | chr6_1:71249164-71249183 | Msa0892240:intron | 40.0% |
| GCATAATATATGCAAGGTCC+GGG | + | chr6_1:71249244-71249263 | Msa0892240:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr6_1:71249245-71249264 | Msa0892240:intron | 40.0% | |
| ! | ACGAGTAAATGCGTGTCATT+TGG | + | chr6_1:71249721-71249740 | Msa0892240:intron | 40.0% |
| GCCATAACAGTTACAGAAAG+AGG | + | chr6_1:71250113-71250132 | Msa0892240:CDS | 40.0% | |
| TGCAAAACAGCTTCCTTTGT+AGG | - | chr6_1:71250155-71250174 | None:intergenic | 40.0% | |
| !!! | ACTCACGCTCGGCTTTTTTA+CGG | - | chr6_1:71245535-71245554 | None:intergenic | 45.0% |
| CAGCGTGAGTTAACTCAGAA+AGG | + | chr6_1:71245569-71245588 | Msa0892240:intron | 45.0% | |
| ACATGTATTCTGGCCCAATC+CGG | - | chr6_1:71245691-71245710 | None:intergenic | 45.0% | |
| AGGATTATGCGTTATTGGGC+TGG | - | chr6_1:71245716-71245735 | None:intergenic | 45.0% | |
| ! | GACAGAGATGACCTTTTGTG+CGG | - | chr6_1:71246078-71246097 | None:intergenic | 45.0% |
| GTTGTTGGGTTTCATGGGAA+CGG | + | chr6_1:71246138-71246157 | Msa0892240:intron | 45.0% | |
| TGAGCTCCCCTATATAAAGG+TGG | + | chr6_1:71246168-71246187 | Msa0892240:intron | 45.0% | |
| ! | TGCGTAACTTGTCCTTGCAA+TGG | - | chr6_1:71246201-71246220 | None:intergenic | 45.0% |
| GTTCACTGCAGAGGAGAAAT+CGG | - | chr6_1:71246293-71246312 | None:intergenic | 45.0% | |
| TTTCTCCTCTGCAGTGAACT+AGG | + | chr6_1:71246294-71246313 | Msa0892240:intron | 45.0% | |
| !! | GTTCGATTTTAGAGGACGGT+GGG | + | chr6_1:71246472-71246491 | Msa0892240:intron | 45.0% |
| !! | TTCGATTTTAGAGGACGGTG+GGG | + | chr6_1:71246473-71246492 | Msa0892240:intron | 45.0% |
| ! | CGCATTTTTGCCACTAATGC+AGG | - | chr6_1:71246603-71246622 | None:intergenic | 45.0% |
| GTGGCAAAAATGCGAGTATC+TGG | + | chr6_1:71246609-71246628 | Msa0892240:intron | 45.0% | |
| TACTAGCGACGCCAACATTT+AGG | + | chr6_1:71246817-71246836 | Msa0892240:intron | 45.0% | |
| GATAGACTTTGTGCCAACTG+TGG | + | chr6_1:71247026-71247045 | Msa0892240:CDS | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | - | chr6_1:71247075-71247094 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | + | chr6_1:71247075-71247094 | Msa0892240:CDS | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | - | chr6_1:71247105-71247124 | None:intergenic | 45.0% | |
| ATGTCGATACTTCTGGCATG+AGG | + | chr6_1:71247570-71247589 | Msa0892240:CDS | 45.0% | |
| TGAGGTTTGATGCCAATGCA+AGG | + | chr6_1:71247588-71247607 | Msa0892240:CDS | 45.0% | |
| AGCTAATGCAGTCCTTGCAT+TGG | - | chr6_1:71247603-71247622 | None:intergenic | 45.0% | |
| !!! | AGCGCGAGTTCTTGTTTTTC+CGG | + | chr6_1:71247648-71247667 | Msa0892240:CDS | 45.0% |
| GCATATCAGCACTTGGATTC+CGG | - | chr6_1:71247670-71247689 | None:intergenic | 45.0% | |
| !! | GCAATGTGTGCTGATTTGCA+TGG | - | chr6_1:71247865-71247884 | None:intergenic | 45.0% |
| GGATCAAGCCGATGTCATTA+AGG | + | chr6_1:71247996-71248015 | Msa0892240:CDS | 45.0% | |
| AACAAATGCATCACCAGCAC+CGG | - | chr6_1:71249121-71249140 | None:intergenic | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_1:71249123-71249142 | Msa0892240:intron | 45.0% |
| TACCAACTGAGCTAAGCTCA+CGG | - | chr6_1:71249216-71249235 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | + | chr6_1:71249216-71249235 | Msa0892240:intron | 45.0% |
| CAAGCAACGTCTTCAACACA+AGG | - | chr6_1:71249512-71249531 | None:intergenic | 45.0% | |
| CTGGGATGAACTCTTACTGA+AGG | + | chr6_1:71249589-71249608 | Msa0892240:intron | 45.0% | |
| GCTTCCTTTGTAGGAAGTGA+AGG | - | chr6_1:71250146-71250165 | None:intergenic | 45.0% | |
| !!! | AAAAAAATTAATATTTTTAC+TGG | + | chr6_1:71249563-71249582 | Msa0892240:intron | 5.0% |
| !!! | TTATATTATATATATTTTCT+TGG | + | chr6_1:71250039-71250058 | Msa0892240:intron | 5.0% |
| GCTCACTCTAATACCCCATC+AGG | + | chr6_1:71245287-71245306 | Msa0892240:CDS | 50.0% | |
| !!! | CTCACGCTCGGCTTTTTTAC+GGG | - | chr6_1:71245534-71245553 | None:intergenic | 50.0% |
| CTGGCCCAATCCGGAAAAAA+AGG | - | chr6_1:71245682-71245701 | None:intergenic | 50.0% | |
| !! | TGGGCTGGTGACATGTATTC+TGG | - | chr6_1:71245701-71245720 | None:intergenic | 50.0% |
| ! | TCTGTCGATTAGGACCGTTG+AGG | + | chr6_1:71246092-71246111 | Msa0892240:intron | 50.0% |
| TTCTCTGTAGAAGCTCCCTG+TGG | + | chr6_1:71246254-71246273 | Msa0892240:intron | 50.0% | |
| GCTATCCTAGTTCACTGCAG+AGG | - | chr6_1:71246302-71246321 | None:intergenic | 50.0% | |
| CTAGGATAGCTCCATCGCAT+TGG | + | chr6_1:71246312-71246331 | Msa0892240:intron | 50.0% | |
| !! | GGTTCGATTTTAGAGGACGG+TGG | + | chr6_1:71246471-71246490 | Msa0892240:intron | 50.0% |
| GACTACGGATCCTGCATTAG+TGG | + | chr6_1:71246590-71246609 | Msa0892240:intron | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | - | chr6_1:71247067-71247086 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | + | chr6_1:71247072-71247091 | Msa0892240:CDS | 50.0% | |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | + | chr6_1:71249047-71249066 | Msa0892240:intron | 50.0% |
| TGTGCAGGAATTTCGAGGCA+GGG | + | chr6_1:71249062-71249081 | Msa0892240:intron | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+GGG | - | chr6_1:71249215-71249234 | None:intergenic | 50.0% | |
| AGCGCACGAGAGATCCTTTG+TGG | - | chr6_1:71246052-71246071 | None:intergenic | 55.0% | |
| CAAAGGATCTCTCGTGCGCT+TGG | + | chr6_1:71246052-71246071 | Msa0892240:intron | 55.0% | |
| GGTGGTTGCGTACCATTGCA+AGG | + | chr6_1:71246186-71246205 | Msa0892240:intron | 55.0% | |
| !! | GGCAGAGGCATTTCTCCACA+GGG | - | chr6_1:71246272-71246291 | None:intergenic | 55.0% |
| TGCAGAGGAGAAATCGGCAG+AGG | - | chr6_1:71246287-71246306 | None:intergenic | 55.0% | |
| GACTTTGTGCCAACTGTGGG+AGG | + | chr6_1:71247030-71247049 | Msa0892240:CDS | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | + | chr6_1:71247099-71247118 | Msa0892240:CDS | 55.0% | |
| TATGCCATTCCGAGCAGCCT+CGG | - | chr6_1:71247965-71247984 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | + | chr6_1:71249061-71249080 | Msa0892240:intron | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | + | chr6_1:71249066-71249085 | Msa0892240:intron | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | + | chr6_1:71249069-71249088 | Msa0892240:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | - | chr6_1:71249214-71249233 | None:intergenic | 55.0% | |
| !! | CGGCAGAGGCATTTCTCCAC+AGG | - | chr6_1:71246273-71246292 | None:intergenic | 60.0% |
| AGCGACACTCCTCCCACAGT+TGG | - | chr6_1:71247042-71247061 | None:intergenic | 60.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | - | chr6_1:71247093-71247112 | None:intergenic | 60.0% | |
| GTGCAGTGTCCGACACGACA+CGG | - | chr6_1:71248408-71248427 | None:intergenic | 60.0% | |
| !! | CCAGCACCGGTTGTGTCAAC+AGG | - | chr6_1:71249108-71249127 | None:intergenic | 60.0% |
| CCTGTTGACACAACCGGTGC+TGG | + | chr6_1:71249105-71249124 | Msa0892240:intron | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | + | chr6_1:71249211-71249230 | Msa0892240:intron | 60.0% | |
| CGTGCGCTTGGCCGCACAAA+AGG | + | chr6_1:71246064-71246083 | Msa0892240:intron | 65.0% | |
| CAAGAACTCGCGCTCGCCGT+CGG | - | chr6_1:71247642-71247661 | None:intergenic | 65.0% | |
| GGCATTATGGCCGTCTGCCG+AGG | + | chr6_1:71247945-71247964 | Msa0892240:CDS | 65.0% | |
| TTCCGAGCAGCCTCGGCAGA+CGG | - | chr6_1:71247958-71247977 | None:intergenic | 65.0% | |
| TCTGCCGAGGCTGCTCGGAA+TGG | + | chr6_1:71247958-71247977 | Msa0892240:CDS | 65.0% | |
| GGGTCAGTGCCGTGTCGTGT+CGG | + | chr6_1:71248396-71248415 | Msa0892240:intron | 65.0% | |
| GGTGGCTGGGATTCGAACCC+CGG | - | chr6_1:71249265-71249284 | None:intergenic | 65.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | + | chr6_1:71247053-71247072 | Msa0892240:CDS | 70.0% |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | + | chr6_1:71247047-71247066 | Msa0892240:CDS | 75.0% |
| GGCCGTCTGCCGAGGCTGCT+CGG | + | chr6_1:71247953-71247972 | Msa0892240:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 71245053 | 71250264 | 71245053 | ID=Msa0892240;Name=Msa0892240 |
| chr6_1 | mRNA | 71245053 | 71250264 | 71245053 | ID=Msa0892240-mRNA-1;Parent=Msa0892240;Name=Msa0892240-mRNA-1;_AED=0.25;_eAED=0.25;_QI=231|0.5|0.42|1|0.66|0.57|7|0|278 |
| chr6_1 | exon | 71245053 | 71245308 | 71245053 | ID=Msa0892240-mRNA-1:exon:12295;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71246953 | 71247161 | 71246953 | ID=Msa0892240-mRNA-1:exon:12296;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71247566 | 71247730 | 71247566 | ID=Msa0892240-mRNA-1:exon:12297;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71247820 | 71248017 | 71247820 | ID=Msa0892240-mRNA-1:exon:12298;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71248167 | 71248268 | 71248167 | ID=Msa0892240-mRNA-1:exon:12299;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71250065 | 71250193 | 71250065 | ID=Msa0892240-mRNA-1:exon:12300;Parent=Msa0892240-mRNA-1 |
| chr6_1 | exon | 71250259 | 71250264 | 71250259 | ID=Msa0892240-mRNA-1:exon:12301;Parent=Msa0892240-mRNA-1 |
| chr6_1 | five_prime_UTR | 71245053 | 71245283 | 71245053 | ID=Msa0892240-mRNA-1:five_prime_utr;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71245284 | 71245308 | 71245284 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71246953 | 71247161 | 71246953 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71247566 | 71247730 | 71247566 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71247820 | 71248017 | 71247820 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71248167 | 71248268 | 71248167 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71250065 | 71250193 | 71250065 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| chr6_1 | CDS | 71250259 | 71250264 | 71250259 | ID=Msa0892240-mRNA-1:cds;Parent=Msa0892240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
