Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916250 | XP_039682791.1 | 90.741 | 324 | 30 | 0 | 1 | 324 | 1 | 324 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916250 | sp|P05050|ALKB_ECOLI | 33.155 | 187 | 101 | 6 | 140 | 323 | 46 | 211 | 2.32e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748970 | Msa0916250 | 0.808634 | 2.812906e-50 | -8.615850e-47 |
| Msa0434000 | Msa0916250 | 0.813304 | 2.738430e-51 | -8.615850e-47 |
| Msa0275020 | Msa0916250 | 0.807010 | 6.227044e-50 | -8.615850e-47 |
| Msa0315940 | Msa0916250 | 0.805212 | 1.488824e-49 | -8.615850e-47 |
| Msa0916250 | Msa0958130 | 0.830746 | 2.468138e-55 | -8.615850e-47 |
| Msa0916250 | Msa1210940 | 0.806239 | 9.060088e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916250 | MtrunA17_Chr6g0475481 | 90.741 | 324 | 30 | 0 | 1 | 324 | 1 | 324 | 0.0 | 606 |
| Msa0916250 | MtrunA17_Chr4g0013241 | 60.909 | 220 | 83 | 2 | 107 | 324 | 226 | 444 | 8.97e-91 | 278 |
| Msa0916250 | MtrunA17_Chr6g0475411 | 79.121 | 91 | 19 | 0 | 233 | 323 | 74 | 164 | 1.68e-44 | 151 |
| Msa0916250 | MtrunA17_Chr6g0475411 | 71.795 | 78 | 21 | 1 | 91 | 168 | 3 | 79 | 4.88e-30 | 113 |
| Msa0916250 | MtrunA17_Chr3g0122471 | 33.113 | 151 | 84 | 4 | 144 | 293 | 181 | 315 | 3.36e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916250 | AT3G14160.1 | 56.146 | 301 | 117 | 6 | 31 | 324 | 163 | 455 | 5.62e-107 | 320 |
| Msa0916250 | AT5G01780.3 | 52.830 | 265 | 111 | 6 | 68 | 324 | 49 | 307 | 7.75e-88 | 266 |
| Msa0916250 | AT5G01780.4 | 52.830 | 265 | 111 | 6 | 68 | 324 | 49 | 307 | 7.75e-88 | 266 |
| Msa0916250 | AT5G01780.1 | 52.830 | 265 | 111 | 6 | 68 | 324 | 129 | 387 | 2.97e-87 | 267 |
| Msa0916250 | AT3G14140.1 | 47.799 | 318 | 130 | 8 | 16 | 306 | 155 | 463 | 1.05e-86 | 268 |
| Msa0916250 | AT5G01780.2 | 52.830 | 265 | 111 | 6 | 68 | 324 | 184 | 442 | 1.95e-86 | 267 |
| Msa0916250 | AT5G01780.5 | 45.665 | 173 | 81 | 5 | 68 | 232 | 184 | 351 | 8.26e-39 | 141 |
Find 103 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACCACCTTTGTTTAA+AGG | 0.158222 | 6_2:+35605218 | Msa0916250:CDS |
| GTGAAAGTATGTAGGGAATT+AGG | 0.173680 | 6_2:+35605350 | Msa0916250:CDS |
| ACTGATCCCCTTTACCAATT+TGG | 0.199110 | 6_2:-35605268 | None:intergenic |
| TATTTCACTTGCTTATTTAC+TGG | 0.207403 | 6_2:+35606341 | Msa0916250:three_prime_UTR |
| TGATGTGTCTTGGTAGAAAT+TGG | 0.246815 | 6_2:+35605435 | Msa0916250:CDS |
| CCCCATGTAATTCACAAAAT+AGG | 0.275286 | 6_2:-35606250 | None:intergenic |
| TAATTCACAAAATAGGTTTC+AGG | 0.285367 | 6_2:-35606243 | None:intergenic |
| AGGAATACTTCCACCTTGTT+TGG | 0.291418 | 6_2:-35605192 | None:intergenic |
| CAAGGCGAAGAAAGTTCTTC+TGG | 0.301818 | 6_2:+35606031 | Msa0916250:CDS |
| GAATAGAAGCACTTTCCTTT+TGG | 0.303908 | 6_2:-35603886 | None:intergenic |
| AAGAAAGTTCTTCTGGAATC+TGG | 0.306255 | 6_2:+35606038 | Msa0916250:CDS |
| GGAATACTTCCACCTTGTTT+GGG | 0.319663 | 6_2:-35605191 | None:intergenic |
| GATTCAATCGGCCAGGTTTA+CGG | 0.336875 | 6_2:-35606163 | None:intergenic |
| TGAAAGTATGTAGGGAATTA+GGG | 0.346841 | 6_2:+35605351 | Msa0916250:CDS |
| ATCAAGGGAAGTTTGGAGTT+AGG | 0.347122 | 6_2:-35605584 | None:intergenic |
| TCTTTCTGTTGAATTCTTTG+TGG | 0.359424 | 6_2:+35606416 | Msa0916250:three_prime_UTR |
| CCAGTGGTGTCATTCTCTAT+TGG | 0.369089 | 6_2:+35605966 | Msa0916250:CDS |
| TGGAGAGATCAAGGGAAGTT+TGG | 0.372563 | 6_2:-35605591 | None:intergenic |
| AAGTTTGGAGTTAGGGTGTT+TGG | 0.374378 | 6_2:-35605576 | None:intergenic |
| TTGGTAACTAGCATCATAAA+TGG | 0.374482 | 6_2:+35603924 | Msa0916250:exon |
| TCAAGGGAAGTTTGGAGTTA+GGG | 0.376280 | 6_2:-35605583 | None:intergenic |
| AGGAAGGAGCAGAACCAAAT+TGG | 0.377122 | 6_2:+35605254 | Msa0916250:CDS |
| TGGAGTTAGGGTGTTTGGCC+AGG | 0.402470 | 6_2:-35605571 | None:intergenic |
| CCCTTGTATCAACTATCAAA+TGG | 0.410676 | 6_2:-35606457 | None:intergenic |
| AGCAGAACCAAATTGGTAAA+GGG | 0.413483 | 6_2:+35605261 | Msa0916250:CDS |
| ACCTGGGATGATTCATTTGA+AGG | 0.433069 | 6_2:+35605295 | Msa0916250:CDS |
| TTAAGATAGTGAAAGTATGT+AGG | 0.436961 | 6_2:+35605342 | Msa0916250:CDS |
| ACAAATGTCTGGAGAGATCA+AGG | 0.448895 | 6_2:-35605600 | None:intergenic |
| TAATTAACAATACAAATGTC+TGG | 0.460593 | 6_2:-35605611 | None:intergenic |
| TAAGATAGTGAAAGTATGTA+GGG | 0.463631 | 6_2:+35605343 | Msa0916250:CDS |
| GAGACAGGATGGTGGTTGAA+TGG | 0.469387 | 6_2:-35604009 | None:intergenic |
| AACTCCAATGGTTCCATTCG+CGG | 0.473968 | 6_2:+35603970 | Msa0916250:CDS |
| AGAAAGTTCTTCTGGAATCT+GGG | 0.474429 | 6_2:+35606039 | Msa0916250:CDS |
| GTATGTAGGGAATTAGGGTT+AGG | 0.475609 | 6_2:+35605356 | Msa0916250:CDS |
| CCTTGTATCAACTATCAAAT+GGG | 0.476979 | 6_2:-35606456 | None:intergenic |
| CGGTCAACTTGGTCTTCATC+AGG | 0.477135 | 6_2:+35605646 | Msa0916250:CDS |
| GAATTAGGGTTAGGTGAAGG+AGG | 0.478275 | 6_2:+35605365 | Msa0916250:CDS |
| TTGAACGTTACCGGTGTTGT+GGG | 0.486685 | 6_2:-35604048 | None:intergenic |
| GAATATCAGCGACCGTGTGA+TGG | 0.488611 | 6_2:+35605479 | Msa0916250:CDS |
| ACCAGTGTCAGGAATTCATC+AGG | 0.488861 | 6_2:-35605521 | None:intergenic |
| ATTGAACGTTACCGGTGTTG+TGG | 0.489735 | 6_2:-35604049 | None:intergenic |
| TTGCAGAGTCAACCAGTGTC+AGG | 0.490419 | 6_2:-35605532 | None:intergenic |
| AATCTATGATAGTCAAAATA+CGG | 0.491635 | 6_2:-35606218 | None:intergenic |
| TTTGATAAGGTTGCTGCTGT+TGG | 0.497816 | 6_2:+35605080 | Msa0916250:intron |
| AAGCGGCTAGGAGCAGTCTC+TGG | 0.505878 | 6_2:-35606122 | None:intergenic |
| AATATCAGCGACCGTGTGAT+GGG | 0.507213 | 6_2:+35605480 | Msa0916250:CDS |
| TTTCACTATCTTAACTTGAT+CGG | 0.509198 | 6_2:-35605333 | None:intergenic |
| GAAACTAATCTCCGTAAACC+TGG | 0.513368 | 6_2:+35606152 | Msa0916250:CDS |
| CCTGGGATGATTCATTTGAA+GGG | 0.514599 | 6_2:+35605296 | Msa0916250:CDS |
| GTTAATTATTATGCTAAGAA+CGG | 0.515016 | 6_2:+35605626 | Msa0916250:CDS |
| ACCAACCTAGTTATGAAGGT+GGG | 0.516364 | 6_2:+35605393 | Msa0916250:CDS |
| ATTCGTATTTCGATACCCAT+TGG | 0.516805 | 6_2:+35603905 | Msa0916250:five_prime_UTR |
| TTATGATGCTAGTTACCAAT+GGG | 0.517314 | 6_2:-35603920 | None:intergenic |
| GGAGTTAGGGTGTTTGGCCA+GGG | 0.519052 | 6_2:-35605570 | None:intergenic |
| AATCAAAGATTCGCATTCCC+TGG | 0.519431 | 6_2:+35605553 | Msa0916250:CDS |
| GTCTGAAAGTAAGATTCAAT+CGG | 0.520803 | 6_2:-35606175 | None:intergenic |
| GAGCAGAACCAAATTGGTAA+AGG | 0.522983 | 6_2:+35605260 | Msa0916250:CDS |
| AAAGTAAGATTCAATCGGCC+AGG | 0.525942 | 6_2:-35606170 | None:intergenic |
| GATGTGTCTTGGTAGAAATT+GGG | 0.527686 | 6_2:+35605436 | Msa0916250:CDS |
| TTTATGATGCTAGTTACCAA+TGG | 0.530368 | 6_2:-35603921 | None:intergenic |
| TATGCTAAGAACGGTCAACT+TGG | 0.530468 | 6_2:+35605635 | Msa0916250:CDS |
| CTGTTTCCTTTAAACAAAGG+TGG | 0.534028 | 6_2:-35605224 | None:intergenic |
| GAATACTTCCACCTTGTTTG+GGG | 0.540380 | 6_2:-35605190 | None:intergenic |
| TCTCTGTTTCCTTTAAACAA+AGG | 0.540412 | 6_2:-35605227 | None:intergenic |
| GTTACCGGTGTTGTGGGCAG+CGG | 0.542345 | 6_2:-35604042 | None:intergenic |
| TATTCGTATTTACTTGTCTG+AGG | 0.548174 | 6_2:-35605461 | None:intergenic |
| ACCCAAACGACAGTTCCAAA+AGG | 0.548319 | 6_2:+35603871 | Msa0916250:five_prime_UTR |
| AGTGAACAGAGTATCGATGA+AGG | 0.554444 | 6_2:+35605939 | Msa0916250:CDS |
| AGCGGTGTTTGTGAAGAGAC+AGG | 0.560348 | 6_2:-35604024 | None:intergenic |
| AAAGGGGATCAGTTAAGACC+TGG | 0.561744 | 6_2:+35605278 | Msa0916250:CDS |
| TGAAGTATGTAAAATTAGCA+TGG | 0.561887 | 6_2:-35606292 | None:intergenic |
| AAATTGAAAATGATGTGTCT+TGG | 0.563234 | 6_2:+35605425 | Msa0916250:CDS |
| AATACTTCCACCTTGTTTGG+GGG | 0.564372 | 6_2:-35605189 | None:intergenic |
| ACGACCGCGAATGGAACCAT+TGG | 0.567862 | 6_2:-35603974 | None:intergenic |
| AACAAAGGTGGTTTCAAACG+AGG | 0.570284 | 6_2:-35605212 | None:intergenic |
| CCCCACCTTCATAACTAGGT+TGG | 0.572257 | 6_2:-35605394 | None:intergenic |
| ATAGCCCCACCTTCATAACT+AGG | 0.574167 | 6_2:-35605398 | None:intergenic |
| CCCTTCAAATGAATCATCCC+AGG | 0.577935 | 6_2:-35605296 | None:intergenic |
| TCCTGATGAATTCCTGACAC+TGG | 0.579264 | 6_2:+35605520 | Msa0916250:CDS |
| GTTTCTTCAAGCAAGCGGCT+AGG | 0.580450 | 6_2:-35606134 | None:intergenic |
| TCGCCATCGCAAAACTCCAA+TGG | 0.583502 | 6_2:+35603958 | Msa0916250:CDS |
| GATTAGTTTCTTCAAGCAAG+CGG | 0.583922 | 6_2:-35606139 | None:intergenic |
| AAGGCTAGAAATGTCTTCCA+TGG | 0.590049 | 6_2:+35606083 | Msa0916250:CDS |
| CCAACCTAGTTATGAAGGTG+GGG | 0.593129 | 6_2:+35605394 | Msa0916250:CDS |
| TTTGTGAATTACATGGGGCA+GGG | 0.595697 | 6_2:+35606255 | Msa0916250:three_prime_UTR |
| GCAGAACCAAATTGGTAAAG+GGG | 0.596312 | 6_2:+35605262 | Msa0916250:CDS |
| AGGGAATTAGGGTTAGGTGA+AGG | 0.601485 | 6_2:+35605362 | Msa0916250:CDS |
| TACCAACCTAGTTATGAAGG+TGG | 0.606763 | 6_2:+35605392 | Msa0916250:CDS |
| AAGTCAATCTTGTCGATCTG+AGG | 0.606848 | 6_2:+35606388 | Msa0916250:three_prime_UTR |
| GAAAGTTCTTCTGGAATCTG+GGG | 0.621233 | 6_2:+35606040 | Msa0916250:CDS |
| GAACAATGATTGTGACAAAG+AGG | 0.622895 | 6_2:+35605121 | Msa0916250:CDS |
| GTGAACAGAGTATCGATGAA+GGG | 0.626296 | 6_2:+35605940 | Msa0916250:CDS |
| TTTGTGAAGAGACAGGATGG+TGG | 0.630879 | 6_2:-35604017 | None:intergenic |
| AACAATGATTGTGACAAAGA+GGG | 0.631402 | 6_2:+35605122 | Msa0916250:CDS |
| AAGGGGATCAGTTAAGACCT+GGG | 0.638461 | 6_2:+35605279 | Msa0916250:CDS |
| CCAATAGAGAATGACACCAC+TGG | 0.639301 | 6_2:-35605966 | None:intergenic |
| AACACCGCTGCCCACAACAC+CGG | 0.661276 | 6_2:+35604038 | Msa0916250:CDS |
| TATCGATGAAGGGTTGCCAG+TGG | 0.666760 | 6_2:+35605950 | Msa0916250:CDS |
| GCTGAATAGCATTAACACCA+TGG | 0.667599 | 6_2:-35606100 | None:intergenic |
| TGATGAAAGGGATGTTGACA+AGG | 0.672012 | 6_2:+35606013 | Msa0916250:CDS |
| CAAATGTCTGGAGAGATCAA+GGG | 0.675682 | 6_2:-35605599 | None:intergenic |
| GTGTTTGTGAAGAGACAGGA+TGG | 0.696338 | 6_2:-35604020 | None:intergenic |
| CTATGATAGTCAAAATACGG+CGG | 0.710459 | 6_2:-35606215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAAAATTTATTCAATTT+TGG | + | chr6_2:35604215-35604234 | Msa0916250:intron | 10.0% |
| !! | ATGATTCTTTCATTAATTAA+TGG | + | chr6_2:35605050-35605069 | Msa0916250:intron | 15.0% |
| !!! | TAATGGATTTTATTTTGATA+AGG | + | chr6_2:35605067-35605086 | Msa0916250:intron | 15.0% |
| !!! | AGACTGTTTTGAAATATTAA+TGG | + | chr6_2:35604893-35604912 | Msa0916250:intron | 20.0% |
| !!! | TTTGAAATATTAATGGAGTT+AGG | + | chr6_2:35604900-35604919 | Msa0916250:intron | 20.0% |
| !! | TTGAAATATTAATGGAGTTA+GGG | + | chr6_2:35604901-35604920 | Msa0916250:intron | 20.0% |
| !! | TAATTAACAATACAAATGTC+TGG | - | chr6_2:35605614-35605633 | None:intergenic | 20.0% |
| !! | GTTAATTATTATGCTAAGAA+CGG | + | chr6_2:35605626-35605645 | Msa0916250:CDS | 20.0% |
| !! | AAGATTCAAAATGTAAAATG+TGG | - | chr6_2:35605877-35605896 | None:intergenic | 20.0% |
| !! | AATCTATGATAGTCAAAATA+CGG | - | chr6_2:35606221-35606240 | None:intergenic | 20.0% |
| ! | ATCATCACGAAATTGAAATT+AGG | + | chr6_2:35604101-35604120 | Msa0916250:intron | 25.0% |
| ! | TCATCACGAAATTGAAATTA+GGG | + | chr6_2:35604102-35604121 | Msa0916250:intron | 25.0% |
| ! | TTAGTGATTACTGTATTTGT+TGG | + | chr6_2:35604139-35604158 | Msa0916250:intron | 25.0% |
| !! | TTTGAGATTAAAAACTCAAC+TGG | + | chr6_2:35604401-35604420 | Msa0916250:intron | 25.0% |
| ! | TTGAGATTAAAAACTCAACT+GGG | + | chr6_2:35604402-35604421 | Msa0916250:intron | 25.0% |
| ! | GTTGAATTATTGTAAACAGA+AGG | + | chr6_2:35604482-35604501 | Msa0916250:intron | 25.0% |
| !!! | AGGGATTAATTTATTGACTT+GGG | + | chr6_2:35604532-35604551 | Msa0916250:intron | 25.0% |
| !!! | AAAATTTTAAGGGACCAAAT+TGG | + | chr6_2:35604562-35604581 | Msa0916250:intron | 25.0% |
| !!! | AAATTTTAAGGGACCAAATT+GGG | + | chr6_2:35604563-35604582 | Msa0916250:intron | 25.0% |
| ! | AATTGAATAAAGACCCAATT+TGG | - | chr6_2:35604579-35604598 | None:intergenic | 25.0% |
| !! | AAATATTTGCCTCTATGTTT+TGG | - | chr6_2:35604853-35604872 | None:intergenic | 25.0% |
| ! | TTAAAGGAAACAGAGAAAAA+AGG | + | chr6_2:35605234-35605253 | Msa0916250:CDS | 25.0% |
| !! | TTTCACTATCTTAACTTGAT+CGG | - | chr6_2:35605336-35605355 | None:intergenic | 25.0% |
| !! | TTAAGATAGTGAAAGTATGT+AGG | + | chr6_2:35605342-35605361 | Msa0916250:CDS | 25.0% |
| !! | TAAGATAGTGAAAGTATGTA+GGG | + | chr6_2:35605343-35605362 | Msa0916250:CDS | 25.0% |
| ! | AAATTGAAAATGATGTGTCT+TGG | + | chr6_2:35605425-35605444 | Msa0916250:CDS | 25.0% |
| ! | TAATTCACAAAATAGGTTTC+AGG | - | chr6_2:35606246-35606265 | None:intergenic | 25.0% |
| !! | AACCTATTTTGTGAATTACA+TGG | + | chr6_2:35606248-35606267 | Msa0916250:three_prime_UTR | 25.0% |
| !! | ACCTATTTTGTGAATTACAT+GGG | + | chr6_2:35606249-35606268 | Msa0916250:three_prime_UTR | 25.0% |
| ! | TGAAGTATGTAAAATTAGCA+TGG | - | chr6_2:35606295-35606314 | None:intergenic | 25.0% |
| ! | TATTTCACTTGCTTATTTAC+TGG | + | chr6_2:35606341-35606360 | Msa0916250:three_prime_UTR | 25.0% |
| TTATGATGCTAGTTACCAAT+GGG | - | chr6_2:35603923-35603942 | None:intergenic | 30.0% | |
| TTTATGATGCTAGTTACCAA+TGG | - | chr6_2:35603924-35603943 | None:intergenic | 30.0% | |
| ! | TTGGTAACTAGCATCATAAA+TGG | + | chr6_2:35603924-35603943 | Msa0916250:exon | 30.0% |
| CTAATCAAATTGAACGTTAC+CGG | - | chr6_2:35604060-35604079 | None:intergenic | 30.0% | |
| ! | ATTTTCCTCGCTATCAATTT+CGG | - | chr6_2:35604279-35604298 | None:intergenic | 30.0% |
| !! | TACTACTTCTAAAACCACTT+GGG | - | chr6_2:35604377-35604396 | None:intergenic | 30.0% |
| !! | ATACTACTTCTAAAACCACT+TGG | - | chr6_2:35604378-35604397 | None:intergenic | 30.0% |
| ! | GAGGGATTAATTTATTGACT+TGG | + | chr6_2:35604531-35604550 | Msa0916250:intron | 30.0% |
| ! | TGGGATGTGAGAAAATTTTA+AGG | + | chr6_2:35604551-35604570 | Msa0916250:intron | 30.0% |
| ! | GGGATGTGAGAAAATTTTAA+GGG | + | chr6_2:35604552-35604571 | Msa0916250:intron | 30.0% |
| TTACAAAGACAGAACCAATT+TGG | - | chr6_2:35604663-35604682 | None:intergenic | 30.0% | |
| TGTGACTAAAACAAAGAGAA+AGG | + | chr6_2:35604747-35604766 | Msa0916250:intron | 30.0% | |
| GTGACTAAAACAAAGAGAAA+GGG | + | chr6_2:35604748-35604767 | Msa0916250:intron | 30.0% | |
| !!! | ATGTTTTGGTCACATAACAA+GGG | - | chr6_2:35604839-35604858 | None:intergenic | 30.0% |
| !!! | TATGTTTTGGTCACATAACA+AGG | - | chr6_2:35604840-35604859 | None:intergenic | 30.0% |
| ! | TTTACTCAGGAAGATTTTGT+AGG | + | chr6_2:35604968-35604987 | Msa0916250:intron | 30.0% |
| AACAATGATTGTGACAAAGA+GGG | + | chr6_2:35605122-35605141 | Msa0916250:CDS | 30.0% | |
| ! | TTGAAACCACCTTTGTTTAA+AGG | + | chr6_2:35605218-35605237 | Msa0916250:CDS | 30.0% |
| TCTCTGTTTCCTTTAAACAA+AGG | - | chr6_2:35605230-35605249 | None:intergenic | 30.0% | |
| ! | TGAAAGTATGTAGGGAATTA+GGG | + | chr6_2:35605351-35605370 | Msa0916250:CDS | 30.0% |
| ! | TTTTACCAACCTAGTTATGA+AGG | + | chr6_2:35605389-35605408 | Msa0916250:CDS | 30.0% |
| TATTCGTATTTACTTGTCTG+AGG | - | chr6_2:35605464-35605483 | None:intergenic | 30.0% | |
| !! | AATTCATCAGGAATTTTTGG+GGG | - | chr6_2:35605512-35605531 | None:intergenic | 30.0% |
| ! | GAATTCATCAGGAATTTTTG+GGG | - | chr6_2:35605513-35605532 | None:intergenic | 30.0% |
| ! | GGAATTCATCAGGAATTTTT+GGG | - | chr6_2:35605514-35605533 | None:intergenic | 30.0% |
| ! | AGGAATTCATCAGGAATTTT+TGG | - | chr6_2:35605515-35605534 | None:intergenic | 30.0% |
| CGCTATTTAATACAAAGTGT+TGG | + | chr6_2:35605770-35605789 | Msa0916250:intron | 30.0% | |
| !! | AGTTTTTGTATGGTGATGAA+AGG | + | chr6_2:35606000-35606019 | Msa0916250:CDS | 30.0% |
| !! | GTTTTTGTATGGTGATGAAA+GGG | + | chr6_2:35606001-35606020 | Msa0916250:CDS | 30.0% |
| GTCTGAAAGTAAGATTCAAT+CGG | - | chr6_2:35606178-35606197 | None:intergenic | 30.0% | |
| ! | CCTATTTTGTGAATTACATG+GGG | + | chr6_2:35606250-35606269 | Msa0916250:three_prime_UTR | 30.0% |
| TCTTTCTGTTGAATTCTTTG+TGG | + | chr6_2:35606416-35606435 | Msa0916250:three_prime_UTR | 30.0% | |
| !!! | GAATAGAAGCACTTTCCTTT+TGG | - | chr6_2:35603889-35603908 | None:intergenic | 35.0% |
| ATTCGTATTTCGATACCCAT+TGG | + | chr6_2:35603905-35603924 | Msa0916250:five_prime_UTR | 35.0% | |
| ACATTAACACAGACACTCAT+GGG | - | chr6_2:35604464-35604483 | None:intergenic | 35.0% | |
| AACATTAACACAGACACTCA+TGG | - | chr6_2:35604465-35604484 | None:intergenic | 35.0% | |
| !! | TTTTGAGTAAGCCACCAAAT+TGG | + | chr6_2:35604646-35604665 | Msa0916250:intron | 35.0% |
| !!! | TTGTTTTAGTCACACGATGA+GGG | - | chr6_2:35604741-35604760 | None:intergenic | 35.0% |
| !!! | TTTGTTTTAGTCACACGATG+AGG | - | chr6_2:35604742-35604761 | None:intergenic | 35.0% |
| GTTATGTGACCAAAACATAG+AGG | + | chr6_2:35604841-35604860 | Msa0916250:intron | 35.0% | |
| ! | TGATAGTGCCTTACAAAGAT+AGG | + | chr6_2:35604931-35604950 | Msa0916250:intron | 35.0% |
| GATAGTGCCTTACAAAGATA+GGG | + | chr6_2:35604932-35604951 | Msa0916250:intron | 35.0% | |
| ATTTGGTCCCTATCTTTGTA+AGG | - | chr6_2:35604942-35604961 | None:intergenic | 35.0% | |
| ACCAAATTAGTGCTTTACTC+AGG | + | chr6_2:35604955-35604974 | Msa0916250:intron | 35.0% | |
| ! | TCCTGAGTAAAGCACTAATT+TGG | - | chr6_2:35604959-35604978 | None:intergenic | 35.0% |
| GAACAATGATTGTGACAAAG+AGG | + | chr6_2:35605121-35605140 | Msa0916250:CDS | 35.0% | |
| CTGTTTCCTTTAAACAAAGG+TGG | - | chr6_2:35605227-35605246 | None:intergenic | 35.0% | |
| AGGAAACAGAGAAAAAAGGA+AGG | + | chr6_2:35605238-35605257 | Msa0916250:CDS | 35.0% | |
| AGCAGAACCAAATTGGTAAA+GGG | + | chr6_2:35605261-35605280 | Msa0916250:CDS | 35.0% | |
| ! | GTGAAAGTATGTAGGGAATT+AGG | + | chr6_2:35605350-35605369 | Msa0916250:CDS | 35.0% |
| TGATGTGTCTTGGTAGAAAT+TGG | + | chr6_2:35605435-35605454 | Msa0916250:CDS | 35.0% | |
| GATGTGTCTTGGTAGAAATT+GGG | + | chr6_2:35605436-35605455 | Msa0916250:CDS | 35.0% | |
| !! | AAGAAAGTTCTTCTGGAATC+TGG | + | chr6_2:35606038-35606057 | Msa0916250:CDS | 35.0% |
| !! | AGAAAGTTCTTCTGGAATCT+GGG | + | chr6_2:35606039-35606058 | Msa0916250:CDS | 35.0% |
| !!! | TCTGGGGATGTTTTAATCTT+CGG | + | chr6_2:35606056-35606075 | Msa0916250:CDS | 35.0% |
| !!! | TGTTTTAATCTTCGGTGGAA+AGG | + | chr6_2:35606064-35606083 | Msa0916250:CDS | 35.0% |
| !! | GATTAGTTTCTTCAAGCAAG+CGG | - | chr6_2:35606142-35606161 | None:intergenic | 35.0% |
| CTATGATAGTCAAAATACGG+CGG | - | chr6_2:35606218-35606237 | None:intergenic | 35.0% | |
| CCCCATGTAATTCACAAAAT+AGG | - | chr6_2:35606253-35606272 | None:intergenic | 35.0% | |
| !!! | TCCTTTTGGAACTGTCGTTT+GGG | - | chr6_2:35603875-35603894 | None:intergenic | 40.0% |
| !!! | TTCCTTTTGGAACTGTCGTT+TGG | - | chr6_2:35603876-35603895 | None:intergenic | 40.0% |
| !! | ATCAATTTCGGTGGGTTAGT+TGG | - | chr6_2:35604267-35604286 | None:intergenic | 40.0% |
| AAAGCATATCTCAAGGTCTC+TGG | - | chr6_2:35604306-35604325 | None:intergenic | 40.0% | |
| AGAGACCTTGAGATATGCTT+TGG | + | chr6_2:35604305-35604324 | Msa0916250:intron | 40.0% | |
| !! | CTTCTAAAACCACTTGGGTT+GGG | - | chr6_2:35604372-35604391 | None:intergenic | 40.0% |
| !! | ACTTCTAAAACCACTTGGGT+TGG | - | chr6_2:35604373-35604392 | None:intergenic | 40.0% |
| GGTCCCTAACAATTTGATTG+CGG | + | chr6_2:35604423-35604442 | Msa0916250:intron | 40.0% | |
| ATTAACACAGACACTCATGG+GGG | - | chr6_2:35604462-35604481 | None:intergenic | 40.0% | |
| CATTAACACAGACACTCATG+GGG | - | chr6_2:35604463-35604482 | None:intergenic | 40.0% | |
| TAGTCCAGTATGAACATGTG+AGG | + | chr6_2:35604512-35604531 | Msa0916250:intron | 40.0% | |
| AGTCCAGTATGAACATGTGA+GGG | + | chr6_2:35604513-35604532 | Msa0916250:intron | 40.0% | |
| AATCCCTCACATGTTCATAC+TGG | - | chr6_2:35604519-35604538 | None:intergenic | 40.0% | |
| CAAAGACAGAACCAATTTGG+TGG | - | chr6_2:35604660-35604679 | None:intergenic | 40.0% | |
| TTTGATAAGGTTGCTGCTGT+TGG | + | chr6_2:35605080-35605099 | Msa0916250:intron | 40.0% | |
| ! | TTGGGGGTGCAAATATCAAA+AGG | - | chr6_2:35605176-35605195 | None:intergenic | 40.0% |
| ! | AATACTTCCACCTTGTTTGG+GGG | - | chr6_2:35605192-35605211 | None:intergenic | 40.0% |
| ! | GAATACTTCCACCTTGTTTG+GGG | - | chr6_2:35605193-35605212 | None:intergenic | 40.0% |
| ! | GGAATACTTCCACCTTGTTT+GGG | - | chr6_2:35605194-35605213 | None:intergenic | 40.0% |
| AGGAATACTTCCACCTTGTT+TGG | - | chr6_2:35605195-35605214 | None:intergenic | 40.0% | |
| AACAAAGGTGGTTTCAAACG+AGG | - | chr6_2:35605215-35605234 | None:intergenic | 40.0% | |
| GAGCAGAACCAAATTGGTAA+AGG | + | chr6_2:35605260-35605279 | Msa0916250:CDS | 40.0% | |
| GCAGAACCAAATTGGTAAAG+GGG | + | chr6_2:35605262-35605281 | Msa0916250:CDS | 40.0% | |
| ACTGATCCCCTTTACCAATT+TGG | - | chr6_2:35605271-35605290 | None:intergenic | 40.0% | |
| ACCTGGGATGATTCATTTGA+AGG | + | chr6_2:35605295-35605314 | Msa0916250:CDS | 40.0% | |
| CCTGGGATGATTCATTTGAA+GGG | + | chr6_2:35605296-35605315 | Msa0916250:CDS | 40.0% | |
| GTATGTAGGGAATTAGGGTT+AGG | + | chr6_2:35605356-35605375 | Msa0916250:CDS | 40.0% | |
| TACCAACCTAGTTATGAAGG+TGG | + | chr6_2:35605392-35605411 | Msa0916250:CDS | 40.0% | |
| ACCAACCTAGTTATGAAGGT+GGG | + | chr6_2:35605393-35605412 | Msa0916250:CDS | 40.0% | |
| AATCAAAGATTCGCATTCCC+TGG | + | chr6_2:35605553-35605572 | Msa0916250:CDS | 40.0% | |
| ! | AAGTTTGGAGTTAGGGTGTT+TGG | - | chr6_2:35605579-35605598 | None:intergenic | 40.0% |
| ! | TCAAGGGAAGTTTGGAGTTA+GGG | - | chr6_2:35605586-35605605 | None:intergenic | 40.0% |
| ! | ATCAAGGGAAGTTTGGAGTT+AGG | - | chr6_2:35605587-35605606 | None:intergenic | 40.0% |
| CAAATGTCTGGAGAGATCAA+GGG | - | chr6_2:35605602-35605621 | None:intergenic | 40.0% | |
| ACAAATGTCTGGAGAGATCA+AGG | - | chr6_2:35605603-35605622 | None:intergenic | 40.0% | |
| TATGCTAAGAACGGTCAACT+TGG | + | chr6_2:35605635-35605654 | Msa0916250:CDS | 40.0% | |
| !! | AGTGAACAGAGTATCGATGA+AGG | + | chr6_2:35605939-35605958 | Msa0916250:CDS | 40.0% |
| !! | GTGAACAGAGTATCGATGAA+GGG | + | chr6_2:35605940-35605959 | Msa0916250:CDS | 40.0% |
| ! | GACACTGCAGAGTTTTTGTA+TGG | + | chr6_2:35605990-35606009 | Msa0916250:CDS | 40.0% |
| TGATGAAAGGGATGTTGACA+AGG | + | chr6_2:35606013-35606032 | Msa0916250:CDS | 40.0% | |
| !! | GAAAGTTCTTCTGGAATCTG+GGG | + | chr6_2:35606040-35606059 | Msa0916250:CDS | 40.0% |
| AAGGCTAGAAATGTCTTCCA+TGG | + | chr6_2:35606083-35606102 | Msa0916250:CDS | 40.0% | |
| GCTGAATAGCATTAACACCA+TGG | - | chr6_2:35606103-35606122 | None:intergenic | 40.0% | |
| GAAACTAATCTCCGTAAACC+TGG | + | chr6_2:35606152-35606171 | Msa0916250:CDS | 40.0% | |
| AAAGTAAGATTCAATCGGCC+AGG | - | chr6_2:35606173-35606192 | None:intergenic | 40.0% | |
| ! | TTTTGTGAATTACATGGGGC+AGG | + | chr6_2:35606254-35606273 | Msa0916250:three_prime_UTR | 40.0% |
| TTTGTGAATTACATGGGGCA+GGG | + | chr6_2:35606255-35606274 | Msa0916250:three_prime_UTR | 40.0% | |
| AAGTCAATCTTGTCGATCTG+AGG | + | chr6_2:35606388-35606407 | Msa0916250:three_prime_UTR | 40.0% | |
| ACCCAAACGACAGTTCCAAA+AGG | + | chr6_2:35603871-35603890 | Msa0916250:five_prime_UTR | 45.0% | |
| ! | GAACCATTGGAGTTTTGCGA+TGG | - | chr6_2:35603964-35603983 | None:intergenic | 45.0% |
| AACTCCAATGGTTCCATTCG+CGG | + | chr6_2:35603970-35603989 | Msa0916250:CDS | 45.0% | |
| TTTGTGAAGAGACAGGATGG+TGG | - | chr6_2:35604020-35604039 | None:intergenic | 45.0% | |
| GTGTTTGTGAAGAGACAGGA+TGG | - | chr6_2:35604023-35604042 | None:intergenic | 45.0% | |
| !! | TTGAACGTTACCGGTGTTGT+GGG | - | chr6_2:35604051-35604070 | None:intergenic | 45.0% |
| ! | ATTGAACGTTACCGGTGTTG+TGG | - | chr6_2:35604052-35604071 | None:intergenic | 45.0% |
| TCCTCGCTATCAATTTCGGT+GGG | - | chr6_2:35604275-35604294 | None:intergenic | 45.0% | |
| TTCCTCGCTATCAATTTCGG+TGG | - | chr6_2:35604276-35604295 | None:intergenic | 45.0% | |
| AGCTGCCAAAGCATATCTCA+AGG | - | chr6_2:35604313-35604332 | None:intergenic | 45.0% | |
| !! | GAAGTGTTGGTTTGAGACCT+TGG | - | chr6_2:35604341-35604360 | None:intergenic | 45.0% |
| !! | TAAAACCACTTGGGTTGGGT+TGG | - | chr6_2:35604368-35604387 | None:intergenic | 45.0% |
| CCGCCGCAATCAAATTGTTA+GGG | - | chr6_2:35604429-35604448 | None:intergenic | 45.0% | |
| CCCTAACAATTTGATTGCGG+CGG | + | chr6_2:35604426-35604445 | Msa0916250:intron | 45.0% | |
| ACCGCCGCAATCAAATTGTT+AGG | - | chr6_2:35604430-35604449 | None:intergenic | 45.0% | |
| GATATTTGCACCCCCAAACA+AGG | + | chr6_2:35605179-35605198 | Msa0916250:CDS | 45.0% | |
| AGGAAGGAGCAGAACCAAAT+TGG | + | chr6_2:35605254-35605273 | Msa0916250:CDS | 45.0% | |
| AAAGGGGATCAGTTAAGACC+TGG | + | chr6_2:35605278-35605297 | Msa0916250:CDS | 45.0% | |
| AAGGGGATCAGTTAAGACCT+GGG | + | chr6_2:35605279-35605298 | Msa0916250:CDS | 45.0% | |
| CCCTTCAAATGAATCATCCC+AGG | - | chr6_2:35605299-35605318 | None:intergenic | 45.0% | |
| AGGGAATTAGGGTTAGGTGA+AGG | + | chr6_2:35605362-35605381 | Msa0916250:CDS | 45.0% | |
| GAATTAGGGTTAGGTGAAGG+AGG | + | chr6_2:35605365-35605384 | Msa0916250:CDS | 45.0% | |
| CCAACCTAGTTATGAAGGTG+GGG | + | chr6_2:35605394-35605413 | Msa0916250:CDS | 45.0% | |
| ATAGCCCCACCTTCATAACT+AGG | - | chr6_2:35605401-35605420 | None:intergenic | 45.0% | |
| AATATCAGCGACCGTGTGAT+GGG | + | chr6_2:35605480-35605499 | Msa0916250:CDS | 45.0% | |
| TCCTGATGAATTCCTGACAC+TGG | + | chr6_2:35605520-35605539 | Msa0916250:CDS | 45.0% | |
| ACCAGTGTCAGGAATTCATC+AGG | - | chr6_2:35605524-35605543 | None:intergenic | 45.0% | |
| TGGAGAGATCAAGGGAAGTT+TGG | - | chr6_2:35605594-35605613 | None:intergenic | 45.0% | |
| TGTGGATGCAGTGTTGTCAA+TGG | - | chr6_2:35605859-35605878 | None:intergenic | 45.0% | |
| ! | GATAGAGTTTGCTTGCTTGC+AGG | + | chr6_2:35605905-35605924 | Msa0916250:intron | 45.0% |
| CCAATAGAGAATGACACCAC+TGG | - | chr6_2:35605969-35605988 | None:intergenic | 45.0% | |
| !! | CCAGTGGTGTCATTCTCTAT+TGG | + | chr6_2:35605966-35605985 | Msa0916250:CDS | 45.0% |
| CAAGGCGAAGAAAGTTCTTC+TGG | + | chr6_2:35606031-35606050 | Msa0916250:CDS | 45.0% | |
| !!! | GGGGATGTTTTAATCTTCGG+TGG | + | chr6_2:35606059-35606078 | Msa0916250:CDS | 45.0% |
| GATTCAATCGGCCAGGTTTA+CGG | - | chr6_2:35606166-35606185 | None:intergenic | 45.0% | |
| !!! | TTTTAAATAAAAGATAATTT+AGG | + | chr6_2:35604607-35604626 | Msa0916250:intron | 5.0% |
| TCGCCATCGCAAAACTCCAA+TGG | + | chr6_2:35603958-35603977 | Msa0916250:CDS | 50.0% | |
| ! | GAGACAGGATGGTGGTTGAA+TGG | - | chr6_2:35604012-35604031 | None:intergenic | 50.0% |
| AGCGGTGTTTGTGAAGAGAC+AGG | - | chr6_2:35604027-35604046 | None:intergenic | 50.0% | |
| !! | ACCCACCGAAATTGATAGCG+AGG | + | chr6_2:35604271-35604290 | Msa0916250:intron | 50.0% |
| !! | TTGGGTTGGTCTGGAAGTGT+TGG | - | chr6_2:35604354-35604373 | None:intergenic | 50.0% |
| ATTTGCACCCCCAAACAAGG+TGG | + | chr6_2:35605182-35605201 | Msa0916250:CDS | 50.0% | |
| CCCCACCTTCATAACTAGGT+TGG | - | chr6_2:35605397-35605416 | None:intergenic | 50.0% | |
| GAATATCAGCGACCGTGTGA+TGG | + | chr6_2:35605479-35605498 | Msa0916250:CDS | 50.0% | |
| TTGCAGAGTCAACCAGTGTC+AGG | - | chr6_2:35605535-35605554 | None:intergenic | 50.0% | |
| ! | CGGTCAACTTGGTCTTCATC+AGG | + | chr6_2:35605646-35605665 | Msa0916250:CDS | 50.0% |
| TGCTACGTGCTATAGCACTC+TGG | + | chr6_2:35605708-35605727 | Msa0916250:intron | 50.0% | |
| GTTTGCTTGCTTGCAGGACA+AGG | + | chr6_2:35605911-35605930 | Msa0916250:intron | 50.0% | |
| TATCGATGAAGGGTTGCCAG+TGG | + | chr6_2:35605950-35605969 | Msa0916250:CDS | 50.0% | |
| GTTTCTTCAAGCAAGCGGCT+AGG | - | chr6_2:35606137-35606156 | None:intergenic | 50.0% | |
| ACGACCGCGAATGGAACCAT+TGG | - | chr6_2:35603977-35603996 | None:intergenic | 55.0% | |
| AACACGATCACGACCGCGAA+TGG | - | chr6_2:35603986-35604005 | None:intergenic | 55.0% | |
| ! | GGAGTTAGGGTGTTTGGCCA+GGG | - | chr6_2:35605573-35605592 | None:intergenic | 55.0% |
| ! | TGGAGTTAGGGTGTTTGGCC+AGG | - | chr6_2:35605574-35605593 | None:intergenic | 55.0% |
| GCTATAGCGCTGTAGCAGAG+CGG | + | chr6_2:35605804-35605823 | Msa0916250:intron | 55.0% | |
| AACACCGCTGCCCACAACAC+CGG | + | chr6_2:35604038-35604057 | Msa0916250:CDS | 60.0% | |
| !! | GTTACCGGTGTTGTGGGCAG+CGG | - | chr6_2:35604045-35604064 | None:intergenic | 60.0% |
| GCTTTGGCAGCTTCGCTCCA+AGG | + | chr6_2:35604321-35604340 | Msa0916250:intron | 60.0% | |
| !! | CCACTTGGGTTGGGTTGGTC+TGG | - | chr6_2:35604363-35604382 | None:intergenic | 60.0% |
| CCAGACCAACCCAACCCAAG+TGG | + | chr6_2:35604360-35604379 | Msa0916250:intron | 60.0% | |
| GGGGGAACTGACCCATCACA+CGG | - | chr6_2:35605494-35605513 | None:intergenic | 60.0% | |
| AAGCGGCTAGGAGCAGTCTC+TGG | - | chr6_2:35606125-35606144 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 35603853 | 35606465 | 35603853 | ID=Msa0916250;Name=Msa0916250 |
| chr6_2 | mRNA | 35603853 | 35606465 | 35603853 | ID=Msa0916250-mRNA-1;Parent=Msa0916250;Name=Msa0916250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=90|1|1|1|1|1|3|260|324 |
| chr6_2 | exon | 35603853 | 35604059 | 35603853 | ID=Msa0916250-mRNA-1:exon:6240;Parent=Msa0916250-mRNA-1 |
| chr6_2 | exon | 35605089 | 35605667 | 35605089 | ID=Msa0916250-mRNA-1:exon:6241;Parent=Msa0916250-mRNA-1 |
| chr6_2 | exon | 35605927 | 35606465 | 35605927 | ID=Msa0916250-mRNA-1:exon:6242;Parent=Msa0916250-mRNA-1 |
| chr6_2 | five_prime_UTR | 35603853 | 35603942 | 35603853 | ID=Msa0916250-mRNA-1:five_prime_utr;Parent=Msa0916250-mRNA-1 |
| chr6_2 | CDS | 35603943 | 35604059 | 35603943 | ID=Msa0916250-mRNA-1:cds;Parent=Msa0916250-mRNA-1 |
| chr6_2 | CDS | 35605089 | 35605667 | 35605089 | ID=Msa0916250-mRNA-1:cds;Parent=Msa0916250-mRNA-1 |
| chr6_2 | CDS | 35605927 | 35606205 | 35605927 | ID=Msa0916250-mRNA-1:cds;Parent=Msa0916250-mRNA-1 |
| chr6_2 | three_prime_UTR | 35606206 | 35606465 | 35606206 | ID=Msa0916250-mRNA-1:three_prime_utr;Parent=Msa0916250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
