AlfalfaGEDB | Msa0958170

M. sativa cultivar zhongmu-4 / Msa0958170

KEGG: K14516
GO: GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958170	XP_013468502.1	89.024	82	9	0	259	340	76	157	5.55e-42	158

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958170	sp\|Q8LDC8\|ERF92_ARATH	70.833	72	21	0	266	337	81	152	4.59e-28	113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958170	A0A072VKJ4	89.024	82	9	0	259	340	76	157	2.65e-42	158

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TFs/TRs:

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Gene ID	Type	Classification
Msa0958170	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0759410	Msa0958170	0.800450	1.432841e-48	-8.615850e-47
Msa0958170	Msa1082500	0.811451	6.956642e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958170	MtrunA17_Chr1g0184011	89.024	82	9	0	259	340	76	157	5.10e-46	158
Msa0958170	MtrunA17_Chr1g0183981	61.654	133	45	3	239	371	48	174	1.61e-45	156
Msa0958170	MtrunA17_Chr1g0184031	69.231	117	29	3	260	375	77	187	7.70e-45	155
Msa0958170	MtrunA17_Chr1g0184071	79.310	87	16	1	256	340	56	142	5.63e-40	140
Msa0958170	MtrunA17_Chr1g0184061	64.545	110	36	2	233	340	42	150	2.24e-39	140
Msa0958170	MtrunA17_Chr7g0268881	92.308	65	5	0	342	406	180	244	3.58e-33	128
Msa0958170	MtrunA17_Chr2g0296381	78.462	65	14	0	342	406	533	597	4.82e-27	113
Msa0958170	MtrunA17_Chr4g0067011	75.385	65	16	0	342	406	535	599	2.78e-26	111
Msa0958170	MtrunA17_Chr2g0283171	55.405	74	33	0	264	337	60	133	4.43e-24	97.4
Msa0958170	MtrunA17_Chr4g0026931	65.672	67	23	0	269	335	133	199	4.82e-23	97.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958170	AT3G23240.1	70.833	72	21	266	337	81	152	4.67e-29	113
Msa0958170	AT4G02570.4	78.462	65	14	342	406	529	593	3.71e-26	111
Msa0958170	AT4G02570.2	78.462	65	14	342	406	529	593	3.71e-26	111
Msa0958170	AT4G02570.1	78.462	65	14	342	406	529	593	3.71e-26	111
Msa0958170	AT4G02570.3	78.462	65	14	342	406	529	593	3.71e-26	111
Msa0958170	AT2G31230.1	59.211	76	31	261	336	80	155	5.53e-24	100
Msa0958170	AT5G43410.1	59.420	69	28	263	331	11	79	6.10e-22	91.3
Msa0958170	AT1G43140.1	65.672	67	23	342	408	512	578	1.12e-20	94.7
Msa0958170	AT5G51190.1	55.224	67	30	260	326	65	131	6.42e-20	88.2
Msa0958170	AT4G17500.1	55.714	70	31	267	336	148	217	8.09e-20	89.0

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Find 73 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAAGGCGCCGAATCT+AGG	0.374494	6_3:-71622252	None:intergenic
AAGTTTGATGGGAATACTGC+AGG	0.547002	6_3:+71622451	Msa0958170:CDS
AATCAAAAGTCATCATATAT+AGG	0.420730	6_3:+71625541	Msa0958170:CDS
AATGAGAGGTAATAATGTTG+TGG	0.579594	6_3:+71625696	Msa0958170:CDS
AATTTAAATAATGCTGGTTG+GGG	0.523387	6_3:+71622675	Msa0958170:CDS
ACACAACAAGAAGAGGAAGA+AGG	0.533196	6_3:+71625608	Msa0958170:CDS
ACCAGCATTATTTAAATTGC+TGG	0.290268	6_3:-71622670	None:intergenic
AGAGATTGAGCCTCTGCAGC+AGG	0.516193	6_3:+71622635	Msa0958170:CDS
AGAGGAAGAAGGGTTTGGCT+TGG	0.531425	6_3:+71625619	Msa0958170:CDS
AGATTCAATATGATTGCAGA+GGG	0.557172	6_3:+71625758	Msa0958170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGCAGATAAGTTTGAT+GGG	+	chr6_3:71622440-71622459	Msa0958170:CDS	30.0%
CAACGAAATTCTAACTTCAT+AGG	-	chr6_3:71622490-71622509	None:intergenic	30.0%
GTAGCATATTTGATTACAAC+AGG	+	chr6_3:71622580-71622599	Msa0958170:intron	30.0%
CCAGCATTATTTAAATTGCT+GGG	-	chr6_3:71622672-71622691	None:intergenic	30.0%
ACCAGCATTATTTAAATTGC+TGG	-	chr6_3:71622673-71622692	None:intergenic	30.0%
GCAATTTAAATAATGCTGGT+TGG	+	chr6_3:71622673-71622692	Msa0958170:CDS	30.0%
CTAATTCTAATAGGCCTAAA+AGG	-	chr6_3:71623228-71623247	None:intergenic	30.0%
TTTGAATTGCCGATGAATTT+GGG	-	chr6_3:71623581-71623600	None:intergenic	30.0%
ATTTGAATTGCCGATGAATT+TGG	-	chr6_3:71623582-71623601	None:intergenic	30.0%
TCTTGGTGAAAAAATGAACT+TGG	-	chr6_3:71623628-71623647	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	71622216	71626821	71622216	ID=Msa0958170;Name=Msa0958170
chr6_3	mRNA	71622216	71626821	71622216	ID=Msa0958170-mRNA-1;Parent=Msa0958170;Name=Msa0958170-mRNA-1;_AED=0.69;_eAED=0.69;_QI=0\|0\|0\|0.3\|1\|1\|10\|0\|409
chr6_3	exon	71622216	71622315	71622216	ID=Msa0958170-mRNA-1:exon:12992;Parent=Msa0958170-mRNA-1
chr6_3	exon	71622396	71622472	71622396	ID=Msa0958170-mRNA-1:exon:12993;Parent=Msa0958170-mRNA-1
chr6_3	exon	71622612	71622734	71622612	ID=Msa0958170-mRNA-1:exon:12994;Parent=Msa0958170-mRNA-1
chr6_3	exon	71624165	71624236	71624165	ID=Msa0958170-mRNA-1:exon:12995;Parent=Msa0958170-mRNA-1
chr6_3	exon	71624370	71624579	71624370	ID=Msa0958170-mRNA-1:exon:12996;Parent=Msa0958170-mRNA-1
chr6_3	exon	71624749	71624876	71624749	ID=Msa0958170-mRNA-1:exon:12997;Parent=Msa0958170-mRNA-1
chr6_3	exon	71624968	71625037	71624968	ID=Msa0958170-mRNA-1:exon:12998;Parent=Msa0958170-mRNA-1
chr6_3	exon	71625538	71625780	71625538	ID=Msa0958170-mRNA-1:exon:12999;Parent=Msa0958170-mRNA-1
chr6_3	exon	71626534	71626677	71626534	ID=Msa0958170-mRNA-1:exon:13000;Parent=Msa0958170-mRNA-1
chr6_3	exon	71626759	71626821	71626759	ID=Msa0958170-mRNA-1:exon:13001;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71622216	71622315	71622216	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71622396	71622472	71622396	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71622612	71622734	71622612	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71624165	71624236	71624165	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71624370	71624579	71624370	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71624749	71624876	71624749	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71624968	71625037	71624968	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71625538	71625780	71625538	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71626534	71626677	71626534	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3	CDS	71626759	71626821	71626759	ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1

Gene Sequence

>Msa0958170

ATGGGTGTTTTTAGGGTGTTTATTTCTGGTGTTCCGCCTAGATTCGGCGCCTTTTGTTTGTATTCTCAATCTCACCGGTCTCTGTTCGTCTTGAGCAGGGGAGGTTATGTTCATCGCGTTAGTGATTTGACGTTCGGAGTGGATTTGAAGCAGATAAGTTTGATGGGAATACTGCAGAGTCTTTTTGATGAGAAAATGAAAGAGATTGAGCCTCTGCAGCAGGCACTGGGAAAGCCCAGCAATTTAAATAATGCTGGTTGGGGCGGTATCTGCTCATCTGAGGACGAACTTAACAATTTCAACACAATGTGTATGCCTGATGTAGAAGCTACAAAGGAAACCATAGGTACTAATAGTAAAGAAATATTAAAGAAAAATGGAGAAAGACTCCAAGTAAAATACAAAGACATCAAAGATTTGGAGGCTATTGAGAAAAAAGATTTTCCTGCAACCAAGCAAGTAAGGATTCATTCATATTCACTGCAAGTAGAAATCTCCCAAGGACAAATAATTTTTAGACTTGATTTCAGTCACAATATGTCAGATGATTTACTTGAAATATGTGTTTCTTTGTTGGCTAAGACCTCACACTTCTTGCTGCATACACCAGAGATTTTAACTTCTTCAGATTCAGTGGAATCTGTAAGGATTCTTAATGACACAAATGCTCCAAGCCTAAGTGAAGAGGCTATGCAAGCTTTGCAAATAGTGAGAAATGTGAACACTGATACAAGAGCCTTGATGGAGTTCAAAGCTGGAGTAAGGAATAAAATGAATCAAATGAATCAAAAGTCATCATATATAGGTGTGAGAAAAAGACCTAGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGTTGAGGATGCTGCTTTGGCTTACGATCAAGCTGCATTTTCAATGAGAGGTAATAATGTTGTGGTCAATTTTTCTGTTCAAAGGGTCAAAGGATCTTTGCAAGAGATTCAATATGATTGCAGAGGGGTCAAGTGTGTGGAAGTTTTTAAGGGATTTTATGAAACAAAGACAAAACATAGAAAACTGATCTGGATTTACTCACTAGGAATTTGCAACATCATTGGCAAGTTTGAGCCAAAAACCATTGAGTTAATTGTCTCAGCCTATCAGGATGCTGCCCGGCTACTATTCAACACTGCGGATAAGTTGAGTTATTCAGAGAAATCATTATAG

Protein sequence

>Msa0958170

MGVFRVFISGVPPRFGAFCLYSQSHRSLFVLSRGGYVHRVSDLTFGVDLKQISLMGILQSLFDEKMKEIEPLQQALGKPSNLNNAGWGGICSSEDELNNFNTMCMPDVEATKETIGTNSKEILKKNGERLQVKYKDIKDLEAIEKKDFPATKQVRIHSYSLQVEISQGQIIFRLDFSHNMSDDLLEICVSLLAKTSHFLLHTPEILTSSDSVESVRILNDTNAPSLSEEAMQALQIVRNVNTDTRALMEFKAGVRNKMNQMNQKSSYIGVRKRPRGKYAAEIRDTTRRGRRVWLGTFDSVEDAALAYDQAAFSMRGNNVVVNFSVQRVKGSLQEIQYDCRGVKCVEVFKGFYETKTKHRKLIWIYSLGICNIIGKFEPKTIELIVSAYQDAARLLFNTADKLSYSEKSL*