AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958170 MtrunA17_Chr1g0184011 89.024 82 9 0 259 340 76 157 5.10e-46 158
Msa0958170 MtrunA17_Chr1g0183981 61.654 133 45 3 239 371 48 174 1.61e-45 156
Msa0958170 MtrunA17_Chr1g0184031 69.231 117 29 3 260 375 77 187 7.70e-45 155
Msa0958170 MtrunA17_Chr1g0184071 79.310 87 16 1 256 340 56 142 5.63e-40 140
Msa0958170 MtrunA17_Chr1g0184061 64.545 110 36 2 233 340 42 150 2.24e-39 140
Msa0958170 MtrunA17_Chr7g0268881 92.308 65 5 0 342 406 180 244 3.58e-33 128
Msa0958170 MtrunA17_Chr2g0296381 78.462 65 14 0 342 406 533 597 4.82e-27 113
Msa0958170 MtrunA17_Chr4g0067011 75.385 65 16 0 342 406 535 599 2.78e-26 111
Msa0958170 MtrunA17_Chr2g0283171 55.405 74 33 0 264 337 60 133 4.43e-24 97.4
Msa0958170 MtrunA17_Chr4g0026931 65.672 67 23 0 269 335 133 199 4.82e-23 97.8
Msa0958170 MtrunA17_Chr4g0026881 40.476 126 61 2 224 343 56 173 7.87e-23 96.3
Msa0958170 MtrunA17_Chr1g0167781 65.432 81 28 0 257 337 72 152 1.87e-22 94.7
Msa0958170 MtrunA17_Chr4g0049701 77.778 54 12 0 101 154 147 200 3.38e-21 93.6
Msa0958170 MtrunA17_Chr1g0196871 66.667 60 20 0 267 326 16 75 4.17e-21 87.4
Msa0958170 MtrunA17_Chr4g0046161 60.656 61 24 0 263 323 53 113 4.45e-21 88.2
Msa0958170 MtrunA17_Chr2g0283181 47.778 90 44 2 253 342 137 223 8.32e-21 92.0
Msa0958170 MtrunA17_Chr7g0261101 53.947 76 35 0 248 323 1 76 9.80e-21 87.8
Msa0958170 MtrunA17_Chr1g0186731 44.318 88 46 1 247 331 1 88 1.12e-20 87.8
Msa0958170 MtrunA17_Chr8g0335311 66.667 57 19 0 267 323 96 152 3.44e-20 88.2
Msa0958170 MtrunA17_Chr4g0055781 37.600 125 77 1 202 326 38 161 5.18e-20 89.0
Msa0958170 MtrunA17_Chr7g0261151 57.812 64 27 0 260 323 13 76 6.93e-20 85.5
Msa0958170 MtrunA17_Chr1g0184081 56.522 69 30 0 255 323 9 77 1.20e-19 85.1
Msa0958170 MtrunA17_Chr1g0170531 46.667 90 39 1 267 347 89 178 1.52e-19 87.0
Msa0958170 MtrunA17_Chr4g0055761 54.286 70 32 0 267 336 145 214 1.66e-19 87.8
Msa0958170 MtrunA17_Chr1g0186741 64.474 76 27 0 263 338 69 144 1.94e-19 86.3
Msa0958170 MtrunA17_Chr4g0055801 57.812 64 27 0 263 326 150 213 2.76e-19 87.8
Msa0958170 MtrunA17_Chr1g0186671 63.158 57 21 0 267 323 19 75 3.73e-19 83.2
Msa0958170 MtrunA17_Chr8g0335331 64.912 57 20 0 267 323 125 181 4.15e-19 85.1
Msa0958170 MtrunA17_Chr7g0221501 57.812 64 26 1 260 323 44 106 8.83e-19 83.6
Msa0958170 MtrunA17_Chr2g0282621 55.405 74 32 1 259 332 7 79 1.24e-18 82.8
Msa0958170 MtrunA17_Chr7g0221471 59.016 61 24 1 263 323 47 106 9.02e-18 80.5
Msa0958170 MtrunA17_Chr7g0250731 63.158 57 21 0 267 323 61 117 9.18e-18 81.3
Msa0958170 MtrunA17_Chr7g0250721 63.158 57 21 0 267 323 61 117 1.06e-17 81.3
Msa0958170 MtrunA17_Chr1g0186681 50.667 75 36 1 253 326 5 79 1.41e-17 78.6
Msa0958170 MtrunA17_Chr4g0066931 45.455 88 40 2 236 323 29 108 4.33e-17 82.0
Msa0958170 MtrunA17_Chr8g0335321 46.988 83 33 1 267 338 96 178 7.17e-17 79.0
Msa0958170 MtrunA17_Chr8g0383591 50.649 77 37 1 247 323 125 200 8.44e-17 80.9
Msa0958170 MtrunA17_Chr7g0250711 59.649 57 23 0 267 323 60 116 8.46e-17 78.6
Msa0958170 MtrunA17_Chr7g0261171 62.667 75 28 0 263 337 81 155 8.93e-17 79.3
Msa0958170 MtrunA17_Chr7g0261201 56.250 80 35 0 263 342 94 173 1.30e-16 79.0
Msa0958170 MtrunA17_Chr1g0170471 62.264 53 20 0 274 326 90 142 1.32e-16 77.4
Msa0958170 MtrunA17_Chr4g0062551 53.846 65 28 2 259 323 46 108 5.03e-16 74.7
Msa0958170 MtrunA17_Chr8g0367911 63.158 57 20 1 267 323 44 99 6.70e-16 77.8
Msa0958170 MtrunA17_Chr8g0378811 52.308 65 30 1 261 325 49 112 7.33e-16 77.4
Msa0958170 MtrunA17_Chr7g0252381 61.404 57 21 1 267 323 42 97 1.06e-15 77.0
Msa0958170 MtrunA17_Chr3g0126321 38.806 134 62 6 215 329 42 174 1.07e-15 77.8
Msa0958170 MtrunA17_Chr2g0316931 54.545 66 29 1 260 325 24 88 1.35e-15 75.1
Msa0958170 MtrunA17_Chr1g0183931 60.274 73 29 0 264 336 98 170 1.96e-15 75.5
Msa0958170 MtrunA17_Chr4g0062161 53.846 65 28 2 259 323 46 108 2.01e-15 74.7
Msa0958170 MtrunA17_Chr7g0253424 48.000 75 34 2 249 323 25 94 3.13e-15 75.5
Msa0958170 MtrunA17_Chr5g0396911 53.846 65 29 1 267 331 112 175 3.85e-15 75.9
Msa0958170 MtrunA17_Chr3g0099871 53.846 65 29 1 263 327 23 86 3.91e-15 74.3
Msa0958170 MtrunA17_Chr4g0044871 54.286 70 29 2 267 336 96 162 4.13e-15 74.3
Msa0958170 MtrunA17_Chr2g0334031 37.143 140 68 7 263 388 113 246 4.13e-15 76.3
Msa0958170 MtrunA17_Chr2g0286161 56.140 57 24 1 267 323 50 105 4.22e-15 75.5
Msa0958170 MtrunA17_Chr8g0344961 59.016 61 24 1 263 323 120 179 4.25e-15 76.3
Msa0958170 MtrunA17_Chr2g0295421 29.379 177 105 4 245 402 74 249 5.97e-15 74.3
Msa0958170 MtrunA17_Chr5g0432821 49.254 67 33 1 263 329 120 185 6.44e-15 74.7
Msa0958170 MtrunA17_Chr7g0261181 58.065 62 26 0 262 323 8 69 6.68e-15 71.2
Msa0958170 MtrunA17_Chr4g0044901 56.522 69 27 2 267 335 96 161 6.72e-15 73.6
Msa0958170 MtrunA17_Chr4g0049651 67.925 53 17 0 101 153 150 202 7.78e-15 76.3
Msa0958170 MtrunA17_Chr2g0297331 51.429 70 30 1 258 323 1 70 7.93e-15 70.9
Msa0958170 MtrunA17_Chr4g0044911 55.882 68 27 2 267 334 96 160 1.05e-14 73.2
Msa0958170 MtrunA17_Chr1g0195151 57.377 61 25 1 263 323 73 132 1.43e-14 73.9
Msa0958170 MtrunA17_Chr1g0183961 63.158 57 21 0 267 323 27 83 1.47e-14 70.9
Msa0958170 MtrunA17_Chr4g0044881 55.556 63 27 1 263 325 110 171 1.53e-14 72.8
Msa0958170 MtrunA17_Chr5g0412641 39.640 111 55 2 213 323 3 101 1.77e-14 74.3
Msa0958170 MtrunA17_Chr2g0317411 83.333 42 7 0 59 100 146 187 1.89e-14 75.1
Msa0958170 MtrunA17_Chr7g0217991 56.140 57 24 1 267 323 42 97 2.45e-14 74.3
Msa0958170 MtrunA17_Chr5g0438831 55.932 59 25 1 267 325 46 103 2.55e-14 72.8
Msa0958170 MtrunA17_Chr2g0282651 54.839 62 27 1 263 324 66 126 3.49e-14 72.0
Msa0958170 MtrunA17_Chr5g0438801 55.932 59 25 1 267 325 51 108 3.81e-14 72.4
Msa0958170 MtrunA17_Chr6g0461271 50.725 69 31 2 255 323 23 88 4.59e-14 72.8
Msa0958170 MtrunA17_Chr6g0453661 56.140 57 24 1 267 323 38 93 5.29e-14 73.2
Msa0958170 MtrunA17_Chr8g0387801 37.143 105 59 3 241 345 83 180 7.04e-14 72.0
Msa0958170 MtrunA17_Chr2g0324131 59.649 57 22 1 267 323 218 273 1.00e-13 72.4
Msa0958170 MtrunA17_Chr8g0350701 50.847 59 28 1 267 325 27 84 1.24e-13 71.2
Msa0958170 MtrunA17_Chr4g0042761 44.048 84 45 2 241 323 21 103 1.95e-13 70.9
Msa0958170 MtrunA17_Chr3g0115631 51.515 66 31 1 267 332 150 214 2.04e-13 70.9
Msa0958170 MtrunA17_Chr8g0382491 49.275 69 34 1 267 335 113 180 2.30e-13 70.1
Msa0958170 MtrunA17_Chr8g0375031 55.000 60 26 1 264 323 122 180 3.34e-13 68.6
Msa0958170 MtrunA17_Chr1g0158971 55.172 58 25 1 267 324 115 171 5.56e-13 69.7
Msa0958170 MtrunA17_Chr5g0425561 56.140 57 24 1 267 323 173 228 2.70e-12 67.8
Msa0958170 MtrunA17_Chr4g0063751 49.231 65 32 1 261 325 1 64 3.00e-12 65.9
Msa0958170 MtrunA17_Chr1g0196781 47.297 74 30 2 250 323 143 207 3.38e-12 67.0
Msa0958170 MtrunA17_Chr4g0023411 51.613 62 29 1 262 323 60 120 5.35e-12 64.7
Msa0958170 MtrunA17_Chr4g0049681 63.830 47 17 0 107 153 95 141 6.21e-12 65.9
Msa0958170 MtrunA17_Chr5g0437671 47.945 73 37 1 262 334 80 151 7.50e-12 66.6
Msa0958170 MtrunA17_Chr2g0301191 45.205 73 39 1 251 323 3 74 9.92e-12 64.3
Msa0958170 MtrunA17_Chr5g0396171 44.444 72 37 2 265 334 22 92 1.17e-11 60.8
Msa0958170 MtrunA17_Chr4g0017851 40.244 82 48 1 242 323 93 173 1.30e-11 65.1
Msa0958170 MtrunA17_Chr2g0323171 50.000 62 30 1 262 323 60 120 1.40e-11 63.2
Msa0958170 MtrunA17_Chr2g0333011 46.154 65 34 1 261 325 1 64 2.03e-11 62.4
Msa0958170 MtrunA17_Chr4g0049671 60.377 53 19 1 101 153 141 191 2.05e-11 65.9
Msa0958170 MtrunA17_Chr7g0265851 49.123 57 28 1 267 323 24 79 2.36e-11 62.8
Msa0958170 MtrunA17_Chr1g0189941 44.286 70 38 1 255 324 12 80 3.79e-11 61.2
Msa0958170 MtrunA17_Chr8g0340311 45.161 62 33 1 263 324 43 103 4.18e-11 62.0
Msa0958170 MtrunA17_Chr4g0003421 46.970 66 34 1 260 325 33 97 5.88e-11 62.4
Msa0958170 MtrunA17_Chr3g0134161 36.364 88 47 2 236 323 22 100 6.75e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958170 AT3G23240.1 70.833 72 21 0 266 337 81 152 4.67e-29 113
Msa0958170 AT4G02570.4 78.462 65 14 0 342 406 529 593 3.71e-26 111
Msa0958170 AT4G02570.2 78.462 65 14 0 342 406 529 593 3.71e-26 111
Msa0958170 AT4G02570.1 78.462 65 14 0 342 406 529 593 3.71e-26 111
Msa0958170 AT4G02570.3 78.462 65 14 0 342 406 529 593 3.71e-26 111
Msa0958170 AT2G31230.1 59.211 76 31 0 261 336 80 155 5.53e-24 100
Msa0958170 AT5G43410.1 59.420 69 28 0 263 331 11 79 6.10e-22 91.3
Msa0958170 AT1G43140.1 65.672 67 23 0 342 408 512 578 1.12e-20 94.7
Msa0958170 AT5G51190.1 55.224 67 30 0 260 326 65 131 6.42e-20 88.2
Msa0958170 AT4G17500.1 55.714 70 31 0 267 336 148 217 8.09e-20 89.0
Msa0958170 AT5G47230.1 57.812 64 27 0 263 326 152 215 1.01e-19 89.4
Msa0958170 AT5G47220.1 55.714 70 31 0 267 336 117 186 1.66e-19 87.4
Msa0958170 AT4G17490.1 57.812 64 27 0 263 326 133 196 8.22e-19 86.3
Msa0958170 AT1G02980.1 58.462 65 27 0 342 406 533 597 1.61e-18 88.2
Msa0958170 AT1G02980.2 58.462 65 27 0 342 406 533 597 1.61e-18 88.2
Msa0958170 AT3G23230.1 53.968 63 29 0 262 324 15 77 1.65e-18 82.0
Msa0958170 AT2G44840.1 61.404 57 22 0 267 323 92 148 5.49e-18 82.8
Msa0958170 AT5G61600.1 57.627 59 25 0 267 325 88 146 6.68e-18 82.8
Msa0958170 AT4G11140.1 51.316 76 36 1 267 342 87 161 8.72e-18 83.6
Msa0958170 AT5G07580.1 61.017 59 23 0 267 325 110 168 9.83e-18 81.6
Msa0958170 AT4G27950.1 47.674 86 43 2 262 347 114 197 1.06e-17 84.0
Msa0958170 AT4G18450.1 54.054 74 30 2 267 339 110 180 1.24e-17 83.6
Msa0958170 AT2G33710.1 58.065 62 25 1 262 323 65 125 4.41e-17 80.1
Msa0958170 AT5G13330.1 41.593 113 61 4 233 342 4 114 5.06e-17 79.7
Msa0958170 AT2G33710.2 58.065 62 25 1 262 323 65 125 5.29e-17 80.1
Msa0958170 AT5G13910.1 63.158 57 20 1 267 323 20 75 1.04e-16 79.0
Msa0958170 AT5G18560.1 52.174 69 32 1 255 323 43 110 1.72e-16 80.5
Msa0958170 AT1G06160.1 63.380 71 26 0 266 336 81 151 1.75e-16 79.0
Msa0958170 AT3G16770.1 42.727 110 44 3 214 323 44 134 1.93e-16 79.0
Msa0958170 AT5G53290.1 51.429 70 33 1 256 325 114 182 2.99e-16 80.1
Msa0958170 AT5G44210.1 46.591 88 46 1 238 325 4 90 3.36e-16 77.0
Msa0958170 AT5G19790.1 45.570 79 40 2 248 324 1 78 8.69e-16 77.0
Msa0958170 AT1G28160.1 61.404 57 21 1 267 323 39 94 1.65e-15 76.3
Msa0958170 AT3G20310.1 51.316 76 35 2 263 337 23 97 2.75e-15 75.5
Msa0958170 AT1G28360.1 63.158 57 20 1 267 323 12 67 4.07e-15 73.9
Msa0958170 AT3G23220.1 70.175 57 17 0 267 323 14 70 9.35e-15 71.2
Msa0958170 AT3G15210.1 59.322 59 23 1 267 325 25 82 9.67e-15 73.6
Msa0958170 AT5G61890.1 46.250 80 41 2 267 346 90 167 1.35e-14 73.6
Msa0958170 AT1G50640.1 57.627 59 24 1 267 325 28 85 1.91e-14 72.8
Msa0958170 AT1G04370.1 63.934 61 22 0 263 323 16 76 1.93e-14 70.5
Msa0958170 AT1G03800.1 46.667 75 39 1 251 325 37 110 2.14e-14 72.8
Msa0958170 AT1G28370.2 58.621 58 23 1 267 324 58 114 3.53e-14 71.6
Msa0958170 AT2G47520.1 50.746 67 32 1 263 329 46 111 3.70e-14 70.5
Msa0958170 AT1G28370.1 58.621 58 23 1 267 324 20 76 3.81e-14 70.5
Msa0958170 AT3G61630.1 47.143 70 36 1 254 323 92 160 4.84e-14 72.8
Msa0958170 AT1G22985.1 40.187 107 61 2 244 347 52 158 5.16e-14 69.7
Msa0958170 AT1G78080.1 46.341 82 38 2 250 331 140 215 5.34e-14 73.2
Msa0958170 AT1G12890.1 54.098 61 27 1 263 323 17 76 5.89e-14 71.2
Msa0958170 AT1G24590.1 61.404 57 21 1 267 323 58 113 7.08e-14 72.4
Msa0958170 AT4G23750.2 54.237 59 26 1 267 325 122 179 7.14e-14 72.8
Msa0958170 AT4G23750.1 54.237 59 26 1 267 325 122 179 7.14e-14 72.8
Msa0958170 AT1G36060.1 53.968 63 28 1 267 329 143 204 7.49e-14 72.4
Msa0958170 AT1G22190.1 50.000 70 34 1 267 336 83 151 7.67e-14 71.6
Msa0958170 AT2G46310.1 56.140 57 24 1 267 323 99 154 1.25e-13 71.6
Msa0958170 AT1G12980.1 58.621 58 23 1 267 324 57 113 1.34e-13 71.6
Msa0958170 AT1G72360.1 54.098 61 27 1 263 323 21 80 1.42e-13 69.7
Msa0958170 AT4G28140.1 54.386 57 25 1 267 323 143 198 2.01e-13 70.9
Msa0958170 AT2G22200.1 56.667 60 25 1 264 323 68 126 4.26e-13 69.3
Msa0958170 AT1G72360.3 54.098 61 27 1 263 323 70 129 4.49e-13 69.3
Msa0958170 AT1G72360.2 54.098 61 27 1 263 323 72 131 4.52e-13 69.3
Msa0958170 AT5G61590.1 53.521 71 33 0 255 325 95 165 5.77e-13 67.8
Msa0958170 AT5G65130.1 34.028 144 82 5 202 335 38 178 7.40e-13 68.9
Msa0958170 AT5G65130.2 49.275 69 34 1 267 335 113 180 7.63e-13 68.9
Msa0958170 AT4G31060.1 50.000 68 32 2 267 334 27 92 8.26e-13 67.0
Msa0958170 AT4G39780.1 50.000 66 32 1 258 323 84 148 2.51e-12 67.4
Msa0958170 AT1G75490.1 46.575 73 38 1 251 323 26 97 3.10e-12 65.9
Msa0958170 AT3G57600.1 39.535 86 49 3 244 327 4 88 3.57e-12 67.0
Msa0958170 AT2G20880.1 54.386 57 25 1 267 323 187 242 4.78e-12 67.0
Msa0958170 AT5G25390.2 47.887 71 36 1 261 331 1 70 6.06e-12 64.7
Msa0958170 AT1G15360.1 47.692 65 33 1 261 325 1 64 1.59e-11 63.5
Msa0958170 AT1G15360.2 47.692 65 33 1 261 325 1 64 1.59e-11 63.5
Msa0958170 AT1G71450.1 46.835 79 34 3 252 323 2 79 1.81e-11 63.2
Msa0958170 AT1G19210.1 50.000 60 29 1 264 323 9 67 4.08e-11 62.0
Msa0958170 AT5G64750.1 52.308 65 28 2 274 336 192 255 4.38e-11 64.7

Find 73 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGCATTATTTAAATTGC+TGG 0.290268 6_3:-71622670 None:intergenic
ATCCTTACTTGCTTGGTTGC+AGG 0.300313 6_3:-71624442 None:intergenic
CACTGATACAAGAGCCTTGA+TGG 0.321757 6_3:+71624980 Msa0958170:CDS
TGAAATATGTGTTTCTTTGT+TGG 0.324955 6_3:+71624552 Msa0958170:CDS
CAATTTAAATAATGCTGGTT+GGG 0.340860 6_3:+71622674 Msa0958170:CDS
ATACAAAGACATCAAAGATT+TGG 0.344019 6_3:+71624396 Msa0958170:CDS
TAATAGTAAAGAAATATTAA+AGG 0.357970 6_3:+71624215 Msa0958170:CDS
TCCTTTGTAGCTTCTACATC+AGG 0.362954 6_3:-71624180 None:intergenic
GTTAATTGTCTCAGCCTATC+AGG 0.366783 6_3:+71626656 Msa0958170:CDS
AAACAAAAGGCGCCGAATCT+AGG 0.374494 6_3:-71622252 None:intergenic
CGCGTTAGTGATTTGACGTT+CGG 0.380117 6_3:+71622410 Msa0958170:CDS
TTTGAAGCAGATAAGTTTGA+TGG 0.380747 6_3:+71622439 Msa0958170:CDS
TGAGCCTCTGCAGCAGGCAC+TGG 0.386505 6_3:+71622641 Msa0958170:CDS
CTAGGAATTTGCAACATCAT+TGG 0.386768 6_3:+71626609 Msa0958170:CDS
TTCTTTACTATTAGTACCTA+TGG 0.388774 6_3:-71624205 None:intergenic
TTCCTGCAACCAAGCAAGTA+AGG 0.407865 6_3:+71624440 Msa0958170:CDS
TCTGGTGTTCCGCCTAGATT+CGG 0.408754 6_3:+71622240 Msa0958170:CDS
AATCAAAAGTCATCATATAT+AGG 0.420730 6_3:+71625541 Msa0958170:CDS
TAGTGTTGAGGATGCTGCTT+TGG 0.421410 6_3:+71625651 Msa0958170:CDS
GGTCTCTGTTCGTCTTGAGC+AGG 0.422061 6_3:+71622292 Msa0958170:CDS
GTCTCTGTTCGTCTTGAGCA+GGG 0.425771 6_3:+71622293 Msa0958170:CDS
TTTCCCAGTGCCTGCTGCAG+AGG 0.426953 6_3:-71622645 None:intergenic
TCTGAAGAAGTTAAAATCTC+TGG 0.431243 6_3:-71624773 None:intergenic
TGAATGAATCCTTACTTGCT+TGG 0.445111 6_3:-71624449 None:intergenic
CAAGAAGAGGAAGAAGGGTT+TGG 0.446404 6_3:+71625614 Msa0958170:CDS
CCCAGCAATTTAAATAATGC+TGG 0.449563 6_3:+71622669 Msa0958170:CDS
CAGATTCAGTGGAATCTGTA+AGG 0.450140 6_3:+71624792 Msa0958170:CDS
GGCTGAGACAATTAACTCAA+TGG 0.471327 6_3:-71626649 None:intergenic
CAAAACATAGAAAACTGATC+TGG 0.475892 6_3:+71626577 Msa0958170:CDS
ATAGCCTCTTCACTTAGGCT+TGG 0.478230 6_3:-71624836 None:intergenic
CCAGCATTATTTAAATTGCT+GGG 0.479089 6_3:-71622669 None:intergenic
CTTGCATAGCCTCTTCACTT+AGG 0.480071 6_3:-71624841 None:intergenic
CGCAGTGTTGAATAGTAGCC+GGG 0.484289 6_3:-71626766 None:intergenic
TTCTTCTACAGGATGCTGCC+CGG 0.499702 6_3:+71626748 Msa0958170:intron
TGGAGTTCAAAGCTGGAGTA+AGG 0.503066 6_3:+71625000 Msa0958170:CDS
GAGCCTCTGCAGCAGGCACT+GGG 0.509435 6_3:+71622642 Msa0958170:CDS
CAAAGACATCAAAGATTTGG+AGG 0.512214 6_3:+71624399 Msa0958170:CDS
GCAATTTAAATAATGCTGGT+TGG 0.513544 6_3:+71622673 Msa0958170:CDS
TTTAACTTCTTCAGATTCAG+TGG 0.515006 6_3:+71624781 Msa0958170:CDS
ATGTGTTTCTTTGTTGGCTA+AGG 0.516175 6_3:+71624558 Msa0958170:CDS
AGAGATTGAGCCTCTGCAGC+AGG 0.516193 6_3:+71622635 Msa0958170:CDS
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 6_3:+71624993 Msa0958170:CDS
ATCAGAGACACAACAAGAAG+AGG 0.520617 6_3:+71625601 Msa0958170:CDS
AATTTAAATAATGCTGGTTG+GGG 0.523387 6_3:+71622675 Msa0958170:CDS
TGCTCAAGACGAACAGAGAC+CGG 0.524062 6_3:-71622290 None:intergenic
TTGAAGCAGATAAGTTTGAT+GGG 0.529478 6_3:+71622440 Msa0958170:CDS
TAGGAAGGGAATTACCTGAT+AGG 0.529845 6_3:-71626670 None:intergenic
CCGCAGTGTTGAATAGTAGC+CGG 0.530301 6_3:-71626767 None:intergenic
AGAGGAAGAAGGGTTTGGCT+TGG 0.531425 6_3:+71625619 Msa0958170:CDS
ACACAACAAGAAGAGGAAGA+AGG 0.533196 6_3:+71625608 Msa0958170:CDS
GTTTGTATTCTCAATCTCAC+CGG 0.536421 6_3:+71622271 Msa0958170:CDS
CACAACAAGAAGAGGAAGAA+GGG 0.536520 6_3:+71625609 Msa0958170:CDS
TCCAGCTTTGAACTCCATCA+AGG 0.536851 6_3:-71624994 None:intergenic
AAGTTTGATGGGAATACTGC+AGG 0.547002 6_3:+71622451 Msa0958170:CDS
TTAAATAATGCTGGTTGGGG+CGG 0.554035 6_3:+71622678 Msa0958170:CDS
AGATTGAGAATACAAACAAA+AGG 0.554957 6_3:-71622265 None:intergenic
CTGATCTGGATTTACTCACT+AGG 0.556434 6_3:+71626591 Msa0958170:CDS
AGATTCAATATGATTGCAGA+GGG 0.557172 6_3:+71625758 Msa0958170:CDS
TGCTCCAAGCCTAAGTGAAG+AGG 0.559997 6_3:+71624832 Msa0958170:CDS
AATGAGAGGTAATAATGTTG+TGG 0.579594 6_3:+71625696 Msa0958170:CDS
TAGTGATTTGACGTTCGGAG+TGG 0.588639 6_3:+71622415 Msa0958170:CDS
GCCTGATGTAGAAGCTACAA+AGG 0.591942 6_3:+71624179 Msa0958170:CDS
GGGCGGTATCTGCTCATCTG+AGG 0.602673 6_3:+71622695 Msa0958170:CDS
TGGAACATTTGATAGTGTTG+AGG 0.606632 6_3:+71625639 Msa0958170:CDS
GAAGCTACAAAGGAAACCAT+AGG 0.607460 6_3:+71624189 Msa0958170:CDS
TCTCTGTTCGTCTTGAGCAG+GGG 0.619192 6_3:+71622294 Msa0958170:CDS
GAGATTCAATATGATTGCAG+AGG 0.637711 6_3:+71625757 Msa0958170:CDS
GTTGTTTCAGGTCAAGTGTG+TGG 0.642737 6_3:+71626524 Msa0958170:intron
CAAAAGGCGCCGAATCTAGG+CGG 0.659345 6_3:-71622249 None:intergenic
CTGCAAGTAGAAATCTCCCA+AGG 0.697715 6_3:+71624478 Msa0958170:CDS
GATTCAATATGATTGCAGAG+GGG 0.735956 6_3:+71625759 Msa0958170:CDS
TGTATGCAGCAAGAAGTGTG+AGG 0.814348 6_3:-71624750 None:intergenic
CCGGCTACTATTCAACACTG+CGG 0.815560 6_3:+71626767 Msa0958170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCTCAATTAAAAATT+TGG - chr6_3:71623699-71623718 None:intergenic 10.0%
!!! AAATTTTTAATTGAGATTAT+TGG + chr6_3:71623698-71623717 Msa0958170:intron 10.0%
!!! AATTTTTAATTGAGATTATT+GGG + chr6_3:71623699-71623718 Msa0958170:intron 10.0%
!!! TTATTTTAAAACCAATATTA+AGG + chr6_3:71623793-71623812 Msa0958170:intron 10.0%
!! TAATAGTAAAGAAATATTAA+AGG + chr6_3:71624215-71624234 Msa0958170:CDS 10.0%
!! TAAAGTAATAAAACAATAAT+CGG - chr6_3:71625283-71625302 None:intergenic 10.0%
!! TTAACAAAATAATAAATTAC+AGG + chr6_3:71626391-71626410 Msa0958170:intron 10.0%
!! TAACAAAATAATAAATTACA+GGG + chr6_3:71626392-71626411 Msa0958170:intron 10.0%
!!! TCATTCTTTATTTATTTCAT+TGG + chr6_3:71622541-71622560 Msa0958170:intron 15.0%
!! GATATTAAAAAACAAAATTG+AGG - chr6_3:71623139-71623158 None:intergenic 15.0%
!!! ATTTTTAATTGAGATTATTG+GGG + chr6_3:71623700-71623719 Msa0958170:intron 15.0%
!!! GTTTTAAAATAACACAAAAA+AGG - chr6_3:71623785-71623804 None:intergenic 15.0%
!! TAACTTAAGAAGAATTATAT+AGG + chr6_3:71624051-71624070 Msa0958170:intron 15.0%
!! AACTTAAGAAGAATTATATA+GGG + chr6_3:71624052-71624071 Msa0958170:intron 15.0%
!!! AATATTAAAGGTAAAGTTTT+TGG + chr6_3:71624227-71624246 Msa0958170:intron 15.0%
!! AATAAATAAAACACAAGTGA+GGG - chr6_3:71622776-71622795 None:intergenic 20.0%
!! ATATTCAAAGAGGTAAATTA+AGG - chr6_3:71622999-71623018 None:intergenic 20.0%
!! GGTATTAAAAAAAAATTGGA+GGG - chr6_3:71623176-71623195 None:intergenic 20.0%
!!! TGCAACATTTATTTTCTTAT+GGG - chr6_3:71623755-71623774 None:intergenic 20.0%
!!! TTGCAACATTTATTTTCTTA+TGG - chr6_3:71623756-71623775 None:intergenic 20.0%
!! AAGAAAATAAATGTTGCAAA+TGG + chr6_3:71623757-71623776 Msa0958170:intron 20.0%
!! GTTAAAAACTACCTTAATAT+TGG - chr6_3:71623807-71623826 None:intergenic 20.0%
!! TCTAAAAATTATTTGTCCTT+GGG - chr6_3:71624497-71624516 None:intergenic 20.0%
!! GAAATTGTAATTTATGAAAG+AGG - chr6_3:71624597-71624616 None:intergenic 20.0%
!! AATCAAAAGTCATCATATAT+AGG + chr6_3:71625541-71625560 Msa0958170:CDS 20.0%
!! TTTCTGATTGTAGTTATTTA+AGG + chr6_3:71626444-71626463 Msa0958170:intron 20.0%
!! TTAACACTAATATGATCAAT+TGG + chr6_3:71626502-71626521 Msa0958170:intron 20.0%
! AGATTGAGAATACAAACAAA+AGG - chr6_3:71622268-71622287 None:intergenic 25.0%
! AATGCAATACATTACATACA+TGG - chr6_3:71622363-71622382 None:intergenic 25.0%
! AACGAAATTCTAACTTCATA+GGG - chr6_3:71622489-71622508 None:intergenic 25.0%
!! CAATTTAAATAATGCTGGTT+GGG + chr6_3:71622674-71622693 Msa0958170:CDS 25.0%
!! AATTTAAATAATGCTGGTTG+GGG + chr6_3:71622675-71622694 Msa0958170:CDS 25.0%
! GAATAAATAAAACACAAGTG+AGG - chr6_3:71622777-71622796 None:intergenic 25.0%
! ACAAACTACTATGTTGTATT+AGG - chr6_3:71622879-71622898 None:intergenic 25.0%
!! CTAAGGAATTGATTTCATAT+TGG + chr6_3:71622963-71622982 Msa0958170:intron 25.0%
!! TCATAAAAGCATATTCAAAG+AGG - chr6_3:71623009-71623028 None:intergenic 25.0%
! AAAAAAACTACCATAGAAGA+AGG - chr6_3:71623033-71623052 None:intergenic 25.0%
! GGGTATTAAAAAAAAATTGG+AGG - chr6_3:71623177-71623196 None:intergenic 25.0%
!!! TGGGGGTATTAAAAAAAAAT+TGG - chr6_3:71623180-71623199 None:intergenic 25.0%
! TAAAACAAGAGGACAAAAAA+TGG - chr6_3:71623204-71623223 None:intergenic 25.0%
!!! TATAAGGTGTTGTATATATG+CGG - chr6_3:71623320-71623339 None:intergenic 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG + chr6_3:71623386-71623405 Msa0958170:intron 25.0%
! ATTAATCTCAAGTTCAAATC+AGG - chr6_3:71623658-71623677 None:intergenic 25.0%
!!! GCAACATTTATTTTCTTATG+GGG - chr6_3:71623754-71623773 None:intergenic 25.0%
! TTAAGCTAATGATCATCTTA+TGG + chr6_3:71623873-71623892 Msa0958170:intron 25.0%
! TTCTTTACTATTAGTACCTA+TGG - chr6_3:71624208-71624227 None:intergenic 25.0%
!! TGATGTCTTTGTATTTTACT+TGG - chr6_3:71624390-71624409 None:intergenic 25.0%
! ATACAAAGACATCAAAGATT+TGG + chr6_3:71624396-71624415 Msa0958170:CDS 25.0%
! GTCTAAAAATTATTTGTCCT+TGG - chr6_3:71624498-71624517 None:intergenic 25.0%
! TGAAATATGTGTTTCTTTGT+TGG + chr6_3:71624552-71624571 Msa0958170:CDS 25.0%
!!! ATCTTTTTCGAGAAATTAGA+AGG + chr6_3:71624670-71624689 Msa0958170:intron 25.0%
! ATGAAGCAAGAAACAATAAT+CGG - chr6_3:71625324-71625343 None:intergenic 25.0%
! TTCATTGTCAAAAATTCAGA+TGG + chr6_3:71625339-71625358 Msa0958170:intron 25.0%
! AATATGCAATATTGTTTGTG+TGG + chr6_3:71625385-71625404 Msa0958170:intron 25.0%
! TGAGAAATCAATCATATCAA+AGG - chr6_3:71625419-71625438 None:intergenic 25.0%
!! TGCTTTATTATTTACACCTT+TGG - chr6_3:71625840-71625859 None:intergenic 25.0%
!! AAAGGTGTAAATAATAAAGC+AGG + chr6_3:71625839-71625858 Msa0958170:intron 25.0%
! AAGGTGTAAATAATAAAGCA+GGG + chr6_3:71625840-71625859 Msa0958170:intron 25.0%
!!! ACTTATGAAGCTTTTTCATA+TGG + chr6_3:71626057-71626076 Msa0958170:intron 25.0%
!!! TCTGTCATGGATATTTTTAA+TGG + chr6_3:71626143-71626162 Msa0958170:intron 25.0%
! TAAACATACTCTGATATCAT+AGG - chr6_3:71626374-71626393 None:intergenic 25.0%
!! ACAATTAACTCAATGGTTTT+TGG - chr6_3:71626645-71626664 None:intergenic 25.0%
!! ATTCGAAAATTTTCTTCTAC+AGG + chr6_3:71626737-71626756 Msa0958170:intron 25.0%
!!! GTTTTTAGGGTGTTTATTTC+TGG + chr6_3:71622222-71622241 Msa0958170:CDS 30.0%
! TTTGAAGCAGATAAGTTTGA+TGG + chr6_3:71622439-71622458 Msa0958170:CDS 30.0%
TTGAAGCAGATAAGTTTGAT+GGG + chr6_3:71622440-71622459 Msa0958170:CDS 30.0%
CAACGAAATTCTAACTTCAT+AGG - chr6_3:71622490-71622509 None:intergenic 30.0%
GTAGCATATTTGATTACAAC+AGG + chr6_3:71622580-71622599 Msa0958170:intron 30.0%
CCAGCATTATTTAAATTGCT+GGG - chr6_3:71622672-71622691 None:intergenic 30.0%
ACCAGCATTATTTAAATTGC+TGG - chr6_3:71622673-71622692 None:intergenic 30.0%
GCAATTTAAATAATGCTGGT+TGG + chr6_3:71622673-71622692 Msa0958170:CDS 30.0%
! TATCCATAAAAGCATATCAG+TGG - chr6_3:71622824-71622843 None:intergenic 30.0%
! TGTTGTATTAGGTGTTTTCA+AGG - chr6_3:71622868-71622887 None:intergenic 30.0%
! CTTTTATGAACCTTCTTCTA+TGG + chr6_3:71623020-71623039 Msa0958170:intron 30.0%
! TTTTTGTCTTCCCTCAAATA+TGG + chr6_3:71623048-71623067 Msa0958170:intron 30.0%
CTAATTCTAATAGGCCTAAA+AGG - chr6_3:71623228-71623247 None:intergenic 30.0%
! CTTTTAGGCCTATTAGAATT+AGG + chr6_3:71623226-71623245 Msa0958170:intron 30.0%
TTTGAATTGCCGATGAATTT+GGG - chr6_3:71623581-71623600 None:intergenic 30.0%
ATTTGAATTGCCGATGAATT+TGG - chr6_3:71623582-71623601 None:intergenic 30.0%
TCTTGGTGAAAAAATGAACT+TGG - chr6_3:71623628-71623647 None:intergenic 30.0%
! ATGATCATTAGCTTAATGTG+CGG - chr6_3:71623869-71623888 None:intergenic 30.0%
TGATAACTCTATATCTGCAT+TGG + chr6_3:71624092-71624111 Msa0958170:intron 30.0%
! ACATTTAGAGTGCTTAATGA+GGG + chr6_3:71624330-71624349 Msa0958170:intron 30.0%
TACATAGCAGAAATTCTTTG+AGG + chr6_3:71624625-71624644 Msa0958170:intron 30.0%
TCTGAAGAAGTTAAAATCTC+TGG - chr6_3:71624776-71624795 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG + chr6_3:71624781-71624800 Msa0958170:CDS 30.0%
GTGATCATATGGTGATTAAT+CGG - chr6_3:71625071-71625090 None:intergenic 30.0%
CTTTATTATGCTATGTACGT+CGG - chr6_3:71625097-71625116 None:intergenic 30.0%
!!! CAATTGTTTTGGCTCATTTT+TGG - chr6_3:71625464-71625483 None:intergenic 30.0%
! GACTTCAACATCAATTGTTT+TGG - chr6_3:71625475-71625494 None:intergenic 30.0%
AATGAGAGGTAATAATGTTG+TGG + chr6_3:71625696-71625715 Msa0958170:CDS 30.0%
! TGGTCAATTTTTCTGTTCAA+AGG + chr6_3:71625716-71625735 Msa0958170:CDS 30.0%
! GGTCAATTTTTCTGTTCAAA+GGG + chr6_3:71625717-71625736 Msa0958170:CDS 30.0%
AGATTCAATATGATTGCAGA+GGG + chr6_3:71625758-71625777 Msa0958170:CDS 30.0%
CAAAGAAAGATGTTATCCAA+AGG + chr6_3:71625821-71625840 Msa0958170:intron 30.0%
! GAGGGATATATAAGAGATTT+TGG + chr6_3:71625878-71625897 Msa0958170:intron 30.0%
!!! ATTTTGGTGTTAGAAGACTT+GGG + chr6_3:71625894-71625913 Msa0958170:intron 30.0%
! TGATGTATTTTGCTTGTGTA+AGG + chr6_3:71626189-71626208 Msa0958170:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG + chr6_3:71626294-71626313 Msa0958170:intron 30.0%
! GTAGTTATTTAAGGTTCCAT+TGG + chr6_3:71626453-71626472 Msa0958170:intron 30.0%
! TATGATCAATTGGTTGTTTC+AGG + chr6_3:71626512-71626531 Msa0958170:intron 30.0%
! AAGTGTGTGGAAGTTTTTAA+GGG + chr6_3:71626537-71626556 Msa0958170:CDS 30.0%
CAAAACATAGAAAACTGATC+TGG + chr6_3:71626577-71626596 Msa0958170:CDS 30.0%
AATAATCAGCATAACAGAAG+AGG - chr6_3:71626704-71626723 None:intergenic 30.0%
GTTTGTATTCTCAATCTCAC+CGG + chr6_3:71622271-71622290 Msa0958170:CDS 35.0%
CCCAGCAATTTAAATAATGC+TGG + chr6_3:71622669-71622688 Msa0958170:CDS 35.0%
! TCACCACTGATATGCTTTTA+TGG + chr6_3:71622818-71622837 Msa0958170:intron 35.0%
!!! AGTTTGTGACTACCCTTTTT+TGG + chr6_3:71622892-71622911 Msa0958170:intron 35.0%
!! CTTAGTTTTTGCACAAGAGT+CGG - chr6_3:71622948-71622967 None:intergenic 35.0%
AAAAACAAAATTGAGGCCCA+TGG - chr6_3:71623132-71623151 None:intergenic 35.0%
!!! TCCTCTTGTTTTAGCCTTTT+AGG + chr6_3:71623211-71623230 Msa0958170:intron 35.0%
CAAGAGGACCTAATTCTAAT+AGG - chr6_3:71623237-71623256 None:intergenic 35.0%
AAATGACTACCGTATACATG+AGG - chr6_3:71623282-71623301 None:intergenic 35.0%
AAAGAACCTTGGTATTACCA+CGG + chr6_3:71623463-71623482 Msa0958170:intron 35.0%
! CAGGCACGTCATTATAATTT+TGG - chr6_3:71623552-71623571 None:intergenic 35.0%
CAAAATTATAATGACGTGCC+TGG + chr6_3:71623550-71623569 Msa0958170:intron 35.0%
TCAAATCAGGTACTCATTCT+TGG - chr6_3:71623645-71623664 None:intergenic 35.0%
TAAGAAGTTCGTCCAAAATC+CGG - chr6_3:71623908-71623927 None:intergenic 35.0%
TGTGACTATTTGTGGTTTCA+TGG - chr6_3:71623954-71623973 None:intergenic 35.0%
TGAAACCACAAATAGTCACA+TGG + chr6_3:71623954-71623973 Msa0958170:intron 35.0%
! GACATTTAGAGTGCTTAATG+AGG + chr6_3:71624329-71624348 Msa0958170:intron 35.0%
CTTAATCCTGTGCAGAAAAA+TGG + chr6_3:71624355-71624374 Msa0958170:intron 35.0%
CAAAGACATCAAAGATTTGG+AGG + chr6_3:71624399-71624418 Msa0958170:CDS 35.0%
TGAATGAATCCTTACTTGCT+TGG - chr6_3:71624452-71624471 None:intergenic 35.0%
! ATGTGTTTCTTTGTTGGCTA+AGG + chr6_3:71624558-71624577 Msa0958170:CDS 35.0%
AGAATTTCTGCTATGTATGC+AGG - chr6_3:71624622-71624641 None:intergenic 35.0%
TGTGAGGTCTAAATCTTTCA+AGG - chr6_3:71624737-71624756 None:intergenic 35.0%
GATATGTAATCATCATCTGC+AGG - chr6_3:71624946-71624965 None:intergenic 35.0%
GCAGATGATGATTACATATC+AGG + chr6_3:71624946-71624965 Msa0958170:intron 35.0%
!! TGGAACATTTGATAGTGTTG+AGG + chr6_3:71625639-71625658 Msa0958170:CDS 35.0%
! TTTTCTGTTCAAAGGGTCAA+AGG + chr6_3:71625724-71625743 Msa0958170:CDS 35.0%
GAGATTCAATATGATTGCAG+AGG + chr6_3:71625757-71625776 Msa0958170:CDS 35.0%
GATTCAATATGATTGCAGAG+GGG + chr6_3:71625759-71625778 Msa0958170:CDS 35.0%
!!! GATTTTGGTGTTAGAAGACT+TGG + chr6_3:71625893-71625912 Msa0958170:intron 35.0%
TGTGATTTCAGTCCTTTATC+TGG + chr6_3:71626265-71626284 Msa0958170:intron 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + chr6_3:71626269-71626288 Msa0958170:intron 35.0%
AGTAAACACCTTCCAGATAA+AGG - chr6_3:71626280-71626299 None:intergenic 35.0%
AATGGAAGGAGAATAGAAAG+AGG + chr6_3:71626312-71626331 Msa0958170:intron 35.0%
! CAAGTGTGTGGAAGTTTTTA+AGG + chr6_3:71626536-71626555 Msa0958170:CDS 35.0%
CTAGGAATTTGCAACATCAT+TGG + chr6_3:71626609-71626628 Msa0958170:CDS 35.0%
! TATTGCATTTTGTCGTTCGC+AGG + chr6_3:71622374-71622393 Msa0958170:intron 40.0%
AAGTTTGATGGGAATACTGC+AGG + chr6_3:71622451-71622470 Msa0958170:CDS 40.0%
CATTGGATGTCAGAGAATTG+CGG + chr6_3:71622558-71622577 Msa0958170:intron 40.0%
! TTAAATAATGCTGGTTGGGG+CGG + chr6_3:71622678-71622697 Msa0958170:CDS 40.0%
TAAAACACAAGTGAGGGCTT+TGG - chr6_3:71622770-71622789 None:intergenic 40.0%
AAGCACACCTGTCCAAAAAA+GGG - chr6_3:71622907-71622926 None:intergenic 40.0%
CGACTCTTGTGCAAAAACTA+AGG + chr6_3:71622946-71622965 Msa0958170:intron 40.0%
TTCCCTCAAATATGGAAAGC+AGG + chr6_3:71623056-71623075 Msa0958170:intron 40.0%
AAGAGGACAAAAAATGGCTG+GGG - chr6_3:71623198-71623217 None:intergenic 40.0%
CAAGAGGACAAAAAATGGCT+GGG - chr6_3:71623199-71623218 None:intergenic 40.0%
ACAAGAGGACAAAAAATGGC+TGG - chr6_3:71623200-71623219 None:intergenic 40.0%
GCCTAAAAGGCTAAAACAAG+AGG - chr6_3:71623215-71623234 None:intergenic 40.0%
! GAATTAGGTCCTCTTGCTTT+TGG + chr6_3:71623241-71623260 Msa0958170:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr6_3:71623252-71623271 Msa0958170:intron 40.0%
!! ACGGTAGTCATTTTCACCTT+TGG + chr6_3:71623289-71623308 Msa0958170:intron 40.0%
!! CGGTAGTCATTTTCACCTTT+GGG + chr6_3:71623290-71623309 Msa0958170:intron 40.0%
TATATATGCGGTACACCCAA+AGG - chr6_3:71623308-71623327 None:intergenic 40.0%
TACCAAGGTTCTTTCCATCA+GGG - chr6_3:71623457-71623476 None:intergenic 40.0%
ATACCAAGGTTCTTTCCATC+AGG - chr6_3:71623458-71623477 None:intergenic 40.0%
CCGTGATTTCACCAAATTCA+CGG - chr6_3:71623492-71623511 None:intergenic 40.0%
! CCGTGAATTTGGTGAAATCA+CGG + chr6_3:71623489-71623508 Msa0958170:intron 40.0%
CTGGATTCTCCCAAATTCAT+CGG + chr6_3:71623569-71623588 Msa0958170:intron 40.0%
TCATTACCATGTCTGACATC+AGG + chr6_3:71623831-71623850 Msa0958170:intron 40.0%
CATCTTATGGCTCATCATAC+CGG + chr6_3:71623886-71623905 Msa0958170:intron 40.0%
AACCACAAATAGTCACATGG+AGG + chr6_3:71623957-71623976 Msa0958170:intron 40.0%
AACCTCCATGTGACTATTTG+TGG - chr6_3:71623962-71623981 None:intergenic 40.0%
CATGGAGGTTAAATAGCTAC+TGG + chr6_3:71623972-71623991 Msa0958170:intron 40.0%
TCCTTTGTAGCTTCTACATC+AGG - chr6_3:71624183-71624202 None:intergenic 40.0%
GAAGCTACAAAGGAAACCAT+AGG + chr6_3:71624189-71624208 Msa0958170:CDS 40.0%
TTCTACCTGTCTTAGTCTCA+TGG + chr6_3:71624305-71624324 Msa0958170:intron 40.0%
!! CTTTCTCCATTTTTCTGCAC+AGG - chr6_3:71624364-71624383 None:intergenic 40.0%
TAGAAGGATTCATCACGTGT+AGG + chr6_3:71624686-71624705 Msa0958170:intron 40.0%
CAGATTCAGTGGAATCTGTA+AGG + chr6_3:71624792-71624811 Msa0958170:CDS 40.0%
AGTTCTATTGCAACCTGCTT+AGG + chr6_3:71624904-71624923 Msa0958170:intron 40.0%
ATTAGAGAGGTAACCTAAGC+AGG - chr6_3:71624920-71624939 None:intergenic 40.0%
CATCTGCAGGAAAATTAGAG+AGG - chr6_3:71624933-71624952 None:intergenic 40.0%
ATTATGCTATGTACGTCGGA+AGG - chr6_3:71625093-71625112 None:intergenic 40.0%
AAGTCGTTGTGCAAGTATCT+TGG - chr6_3:71625172-71625191 None:intergenic 40.0%
! GTCATCATCATCTGAAGCAA+AGG + chr6_3:71625492-71625511 Msa0958170:intron 40.0%
TAGGTGTGAGAAAAAGACCT+AGG + chr6_3:71625560-71625579 Msa0958170:CDS 40.0%
AGGTGTGAGAAAAAGACCTA+GGG + chr6_3:71625561-71625580 Msa0958170:CDS 40.0%
ATCAGAGACACAACAAGAAG+AGG + chr6_3:71625601-71625620 Msa0958170:CDS 40.0%
ACACAACAAGAAGAGGAAGA+AGG + chr6_3:71625608-71625627 Msa0958170:CDS 40.0%
CACAACAAGAAGAGGAAGAA+GGG + chr6_3:71625609-71625628 Msa0958170:CDS 40.0%
! CAAGCTGCATTTTCAATGAG+AGG + chr6_3:71625682-71625701 Msa0958170:CDS 40.0%
TTCACCTGAACTTGCACTAA+AGG + chr6_3:71625784-71625803 Msa0958170:intron 40.0%
AGGGAAACAAGATCAATCAG+AGG + chr6_3:71625859-71625878 Msa0958170:intron 40.0%
GGGAAACAAGATCAATCAGA+GGG + chr6_3:71625860-71625879 Msa0958170:intron 40.0%
GAGTCTCAAACAATCTGTCA+TGG + chr6_3:71626130-71626149 Msa0958170:intron 40.0%
CTATGAGAGAGAGAAATGGA+AGG + chr6_3:71626298-71626317 Msa0958170:intron 40.0%
CTGATCTGGATTTACTCACT+AGG + chr6_3:71626591-71626610 Msa0958170:CDS 40.0%
GGCTGAGACAATTAACTCAA+TGG - chr6_3:71626652-71626671 None:intergenic 40.0%
GTTAATTGTCTCAGCCTATC+AGG + chr6_3:71626656-71626675 Msa0958170:CDS 40.0%
TAGGAAGGGAATTACCTGAT+AGG - chr6_3:71626673-71626692 None:intergenic 40.0%
AAGAGGATGAGTCTTAGGAA+GGG - chr6_3:71626687-71626706 None:intergenic 40.0%
AACAGAAGAGGATGAGTCTT+AGG - chr6_3:71626692-71626711 None:intergenic 40.0%
!! AAACAAAAGGCGCCGAATCT+AGG - chr6_3:71622255-71622274 None:intergenic 45.0%
CGCGTTAGTGATTTGACGTT+CGG + chr6_3:71622410-71622429 Msa0958170:CDS 45.0%
TAGTGATTTGACGTTCGGAG+TGG + chr6_3:71622415-71622434 Msa0958170:CDS 45.0%
!!! GTGACTACCCTTTTTTGGAC+AGG + chr6_3:71622897-71622916 Msa0958170:intron 45.0%
GAAGCACACCTGTCCAAAAA+AGG - chr6_3:71622908-71622927 None:intergenic 45.0%
GTCGGTCTCTATTGCTTGTA+TGG - chr6_3:71622930-71622949 None:intergenic 45.0%
GGCCTGCTTTCCATATTTGA+GGG - chr6_3:71623061-71623080 None:intergenic 45.0%
TCAAATATGGAAAGCAGGCC+CGG + chr6_3:71623061-71623080 Msa0958170:intron 45.0%
AGAGGACAAAAAATGGCTGG+GGG - chr6_3:71623197-71623216 None:intergenic 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG + chr6_3:71623248-71623267 Msa0958170:intron 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr6_3:71623253-71623272 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr6_3:71623251-71623270 Msa0958170:intron 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr6_3:71623253-71623272 Msa0958170:intron 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG + chr6_3:71623254-71623273 Msa0958170:intron 45.0%
TTTGGTGAAATCACGGACAC+TGG + chr6_3:71623496-71623515 Msa0958170:intron 45.0%
CGATGAATTTGGGAGAATCC+AGG - chr6_3:71623571-71623590 None:intergenic 45.0%
TTGGGGCATGAAATTCCTTC+TGG + chr6_3:71623717-71623736 Msa0958170:intron 45.0%
TGGGGCATGAAATTCCTTCT+GGG + chr6_3:71623718-71623737 Msa0958170:intron 45.0%
CTGAAACCTGATGTCAGACA+TGG - chr6_3:71623840-71623859 None:intergenic 45.0%
! TGGCTCATCATACCGGATTT+TGG + chr6_3:71623893-71623912 Msa0958170:intron 45.0%
GTGGTTTCATGGAGCGAATA+AGG - chr6_3:71623943-71623962 None:intergenic 45.0%
GCCTGATGTAGAAGCTACAA+AGG + chr6_3:71624179-71624198 Msa0958170:CDS 45.0%
TGTCACCATGAGACTAAGAC+AGG - chr6_3:71624313-71624332 None:intergenic 45.0%
TTCCTGCAACCAAGCAAGTA+AGG + chr6_3:71624440-71624459 Msa0958170:CDS 45.0%
ATCCTTACTTGCTTGGTTGC+AGG - chr6_3:71624445-71624464 None:intergenic 45.0%
CTGCAAGTAGAAATCTCCCA+AGG + chr6_3:71624478-71624497 Msa0958170:CDS 45.0%
GTTGGCTAAGGTGAAAGAGT+TGG + chr6_3:71624570-71624589 Msa0958170:intron 45.0%
!! TGTAGGAGCATTCCCTCATA+AGG + chr6_3:71624703-71624722 Msa0958170:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG - chr6_3:71624718-71624737 None:intergenic 45.0%
! TGTATGCAGCAAGAAGTGTG+AGG - chr6_3:71624753-71624772 None:intergenic 45.0%
ATAGCCTCTTCACTTAGGCT+TGG - chr6_3:71624839-71624858 None:intergenic 45.0%
CTTGCATAGCCTCTTCACTT+AGG - chr6_3:71624844-71624863 None:intergenic 45.0%
CACTGATACAAGAGCCTTGA+TGG + chr6_3:71624980-71624999 Msa0958170:CDS 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG - chr6_3:71624997-71625016 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG + chr6_3:71625000-71625019 Msa0958170:CDS 45.0%
TACGTCGGAAGGTGATCATA+TGG - chr6_3:71625082-71625101 None:intergenic 45.0%
GGTGTGAGAAAAAGACCTAG+GGG + chr6_3:71625562-71625581 Msa0958170:CDS 45.0%
! TCTGCTGCATATTTTCCCCT+AGG - chr6_3:71625580-71625599 None:intergenic 45.0%
CAAGAAGAGGAAGAAGGGTT+TGG + chr6_3:71625614-71625633 Msa0958170:CDS 45.0%
! TAGTGTTGAGGATGCTGCTT+TGG + chr6_3:71625651-71625670 Msa0958170:CDS 45.0%
CTCTCCTTTAGTGCAAGTTC+AGG - chr6_3:71625791-71625810 None:intergenic 45.0%
!! AATCTGCCTTCTGAGATGGT+AGG + chr6_3:71626415-71626434 Msa0958170:intron 45.0%
TATGCTCCTACCATCTCAGA+AGG - chr6_3:71626424-71626443 None:intergenic 45.0%
TCTTCGTCAGAGAACACCAA+TGG - chr6_3:71626472-71626491 None:intergenic 45.0%
! GTTGTTTCAGGTCAAGTGTG+TGG + chr6_3:71626524-71626543 Msa0958170:intron 45.0%
GAAGAGGATGAGTCTTAGGA+AGG - chr6_3:71626688-71626707 None:intergenic 45.0%
!!! TTTTTTAAAAGATAAATATA+AGG - chr6_3:71623336-71623355 None:intergenic 5.0%
TCTGGTGTTCCGCCTAGATT+CGG + chr6_3:71622240-71622259 Msa0958170:CDS 50.0%
TGCTCAAGACGAACAGAGAC+CGG - chr6_3:71622293-71622312 None:intergenic 50.0%
GTCTCTGTTCGTCTTGAGCA+GGG + chr6_3:71622293-71622312 Msa0958170:CDS 50.0%
TCTCTGTTCGTCTTGAGCAG+GGG + chr6_3:71622294-71622313 Msa0958170:CDS 50.0%
! TGCATTTTGTCGTTCGCAGG+AGG + chr6_3:71622377-71622396 Msa0958170:intron 50.0%
GGGCCTGCTTTCCATATTTG+AGG - chr6_3:71623062-71623081 None:intergenic 50.0%
TGCAAACAGCTCAACAGAGC+TGG + chr6_3:71623095-71623114 Msa0958170:intron 50.0%
GCAAACAGCTCAACAGAGCT+GGG + chr6_3:71623096-71623115 Msa0958170:intron 50.0%
AAATTGAGGCCCATGGCTGA+GGG - chr6_3:71623125-71623144 None:intergenic 50.0%
AAAATTGAGGCCCATGGCTG+AGG - chr6_3:71623126-71623145 None:intergenic 50.0%
TTGGAGGGCAGTAGTACTAG+TGG - chr6_3:71623161-71623180 None:intergenic 50.0%
GTGGGGGTTCCTCATGTATA+CGG + chr6_3:71623270-71623289 Msa0958170:intron 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr6_3:71623412-71623431 None:intergenic 50.0%
TCCCTAAGAATTCGGAGGCT+CGG - chr6_3:71623431-71623450 None:intergenic 50.0%
AGCCTCCGAATTCTTAGGGA+CGG + chr6_3:71623431-71623450 Msa0958170:intron 50.0%
TACCACGGACACCGTGAATT+TGG + chr6_3:71623478-71623497 Msa0958170:intron 50.0%
GGGGAAAAAGACATCCCAGA+AGG - chr6_3:71623735-71623754 None:intergenic 50.0%
CTGACATCAGGTTTCAGCTC+TGG + chr6_3:71623843-71623862 Msa0958170:intron 50.0%
! CAAGGATGTGCAGCCTTATG+AGG - chr6_3:71624719-71624738 None:intergenic 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG + chr6_3:71624832-71624851 Msa0958170:CDS 50.0%
GCCTTGATGGAGTTCAAAGC+TGG + chr6_3:71624993-71625012 Msa0958170:CDS 50.0%
AGAGGAAGAAGGGTTTGGCT+TGG + chr6_3:71625619-71625638 Msa0958170:CDS 50.0%
! AGGGAATCTGCCTTCTGAGA+TGG + chr6_3:71626411-71626430 Msa0958170:intron 50.0%
TTCTTCTACAGGATGCTGCC+CGG + chr6_3:71626748-71626767 Msa0958170:intron 50.0%
! CGCAGTGTTGAATAGTAGCC+GGG - chr6_3:71626769-71626788 None:intergenic 50.0%
! CCGCAGTGTTGAATAGTAGC+CGG - chr6_3:71626770-71626789 None:intergenic 50.0%
CCGGCTACTATTCAACACTG+CGG + chr6_3:71626767-71626786 Msa0958170:CDS 50.0%
!! CAAAAGGCGCCGAATCTAGG+CGG - chr6_3:71622252-71622271 None:intergenic 55.0%
GGTCTCTGTTCGTCTTGAGC+AGG + chr6_3:71622292-71622311 Msa0958170:CDS 55.0%
AGAGATTGAGCCTCTGCAGC+AGG + chr6_3:71622635-71622654 Msa0958170:CDS 55.0%
AGCCGAGCCTCCGAATTCTT+AGG + chr6_3:71623426-71623445 Msa0958170:intron 55.0%
GCCGAGCCTCCGAATTCTTA+GGG + chr6_3:71623427-71623446 Msa0958170:intron 55.0%
CAGGGCCGTCCCTAAGAATT+CGG - chr6_3:71623439-71623458 None:intergenic 55.0%
ATTCTTAGGGACGGCCCTGA+TGG + chr6_3:71623440-71623459 Msa0958170:intron 55.0%
GGCCCTGATGGAAAGAACCT+TGG + chr6_3:71623452-71623471 Msa0958170:intron 55.0%
CGGTGTCCGTGGTAATACCA+AGG - chr6_3:71623472-71623491 None:intergenic 55.0%
CACCAAATTCACGGTGTCCG+TGG - chr6_3:71623483-71623502 None:intergenic 55.0%
GTTCGTCTTGAGCAGGGGTC+TGG + chr6_3:71622299-71622318 Msa0958170:intron 60.0%
TTTCCCAGTGCCTGCTGCAG+AGG - chr6_3:71622648-71622667 None:intergenic 60.0%
GGGCGGTATCTGCTCATCTG+AGG + chr6_3:71622695-71622714 Msa0958170:CDS 60.0%
GAGCTGTTTGCACCCCCTCA+GGG - chr6_3:71623087-71623106 None:intergenic 60.0%
TGAGCTGTTTGCACCCCCTC+AGG - chr6_3:71623088-71623107 None:intergenic 60.0%
GAATTCGGAGGCTCGGCTCT+GGG - chr6_3:71623424-71623443 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG - chr6_3:71623425-71623444 None:intergenic 60.0%
GGCCGTCCCTAAGAATTCGG+AGG - chr6_3:71623436-71623455 None:intergenic 60.0%
TGAGCCTCTGCAGCAGGCAC+TGG + chr6_3:71622641-71622660 Msa0958170:CDS 65.0%
GAGCCTCTGCAGCAGGCACT+GGG + chr6_3:71622642-71622661 Msa0958170:CDS 65.0%
TGTTTGCACCCCCTCAGGGC+CGG - chr6_3:71623083-71623102 None:intergenic 65.0%
TTGAGGCCCATGGCTGAGGG+AGG - chr6_3:71623122-71623141 None:intergenic 65.0%
GAAAGCAGGCCCGGCCCTGA+GGG + chr6_3:71623070-71623089 Msa0958170:intron 70.0%
AAAGCAGGCCCGGCCCTGAG+GGG + chr6_3:71623071-71623090 Msa0958170:intron 70.0%
GTTTGCACCCCCTCAGGGCC+GGG - chr6_3:71623082-71623101 None:intergenic 70.0%
AGCTGGGCCTCCCTCAGCCA+TGG + chr6_3:71623112-71623131 Msa0958170:intron 70.0%
GCTGGGCCTCCCTCAGCCAT+GGG + chr6_3:71623113-71623132 Msa0958170:intron 70.0%
GGAAAGCAGGCCCGGCCCTG+AGG + chr6_3:71623069-71623088 Msa0958170:intron 75.0%
AAGCAGGCCCGGCCCTGAGG+GGG + chr6_3:71623072-71623091 Msa0958170:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 71622216 71626821 71622216 ID=Msa0958170;Name=Msa0958170
chr6_3 mRNA 71622216 71626821 71622216 ID=Msa0958170-mRNA-1;Parent=Msa0958170;Name=Msa0958170-mRNA-1;_AED=0.69;_eAED=0.69;_QI=0|0|0|0.3|1|1|10|0|409
chr6_3 exon 71622216 71622315 71622216 ID=Msa0958170-mRNA-1:exon:12992;Parent=Msa0958170-mRNA-1
chr6_3 exon 71622396 71622472 71622396 ID=Msa0958170-mRNA-1:exon:12993;Parent=Msa0958170-mRNA-1
chr6_3 exon 71622612 71622734 71622612 ID=Msa0958170-mRNA-1:exon:12994;Parent=Msa0958170-mRNA-1
chr6_3 exon 71624165 71624236 71624165 ID=Msa0958170-mRNA-1:exon:12995;Parent=Msa0958170-mRNA-1
chr6_3 exon 71624370 71624579 71624370 ID=Msa0958170-mRNA-1:exon:12996;Parent=Msa0958170-mRNA-1
chr6_3 exon 71624749 71624876 71624749 ID=Msa0958170-mRNA-1:exon:12997;Parent=Msa0958170-mRNA-1
chr6_3 exon 71624968 71625037 71624968 ID=Msa0958170-mRNA-1:exon:12998;Parent=Msa0958170-mRNA-1
chr6_3 exon 71625538 71625780 71625538 ID=Msa0958170-mRNA-1:exon:12999;Parent=Msa0958170-mRNA-1
chr6_3 exon 71626534 71626677 71626534 ID=Msa0958170-mRNA-1:exon:13000;Parent=Msa0958170-mRNA-1
chr6_3 exon 71626759 71626821 71626759 ID=Msa0958170-mRNA-1:exon:13001;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71622216 71622315 71622216 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71622396 71622472 71622396 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71622612 71622734 71622612 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71624165 71624236 71624165 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71624370 71624579 71624370 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71624749 71624876 71624749 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71624968 71625037 71624968 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71625538 71625780 71625538 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71626534 71626677 71626534 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
chr6_3 CDS 71626759 71626821 71626759 ID=Msa0958170-mRNA-1:cds;Parent=Msa0958170-mRNA-1
Gene Sequence

>Msa0958170

ATGGGTGTTTTTAGGGTGTTTATTTCTGGTGTTCCGCCTAGATTCGGCGCCTTTTGTTTGTATTCTCAATCTCACCGGTCTCTGTTCGTCTTGAGCAGGGGAGGTTATGTTCATCGCGTTAGTGATTTGACGTTCGGAGTGGATTTGAAGCAGATAAGTTTGATGGGAATACTGCAGAGTCTTTTTGATGAGAAAATGAAAGAGATTGAGCCTCTGCAGCAGGCACTGGGAAAGCCCAGCAATTTAAATAATGCTGGTTGGGGCGGTATCTGCTCATCTGAGGACGAACTTAACAATTTCAACACAATGTGTATGCCTGATGTAGAAGCTACAAAGGAAACCATAGGTACTAATAGTAAAGAAATATTAAAGAAAAATGGAGAAAGACTCCAAGTAAAATACAAAGACATCAAAGATTTGGAGGCTATTGAGAAAAAAGATTTTCCTGCAACCAAGCAAGTAAGGATTCATTCATATTCACTGCAAGTAGAAATCTCCCAAGGACAAATAATTTTTAGACTTGATTTCAGTCACAATATGTCAGATGATTTACTTGAAATATGTGTTTCTTTGTTGGCTAAGACCTCACACTTCTTGCTGCATACACCAGAGATTTTAACTTCTTCAGATTCAGTGGAATCTGTAAGGATTCTTAATGACACAAATGCTCCAAGCCTAAGTGAAGAGGCTATGCAAGCTTTGCAAATAGTGAGAAATGTGAACACTGATACAAGAGCCTTGATGGAGTTCAAAGCTGGAGTAAGGAATAAAATGAATCAAATGAATCAAAAGTCATCATATATAGGTGTGAGAAAAAGACCTAGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGTTGAGGATGCTGCTTTGGCTTACGATCAAGCTGCATTTTCAATGAGAGGTAATAATGTTGTGGTCAATTTTTCTGTTCAAAGGGTCAAAGGATCTTTGCAAGAGATTCAATATGATTGCAGAGGGGTCAAGTGTGTGGAAGTTTTTAAGGGATTTTATGAAACAAAGACAAAACATAGAAAACTGATCTGGATTTACTCACTAGGAATTTGCAACATCATTGGCAAGTTTGAGCCAAAAACCATTGAGTTAATTGTCTCAGCCTATCAGGATGCTGCCCGGCTACTATTCAACACTGCGGATAAGTTGAGTTATTCAGAGAAATCATTATAG
Protein sequence

>Msa0958170

MGVFRVFISGVPPRFGAFCLYSQSHRSLFVLSRGGYVHRVSDLTFGVDLKQISLMGILQSLFDEKMKEIEPLQQALGKPSNLNNAGWGGICSSEDELNNFNTMCMPDVEATKETIGTNSKEILKKNGERLQVKYKDIKDLEAIEKKDFPATKQVRIHSYSLQVEISQGQIIFRLDFSHNMSDDLLEICVSLLAKTSHFLLHTPEILTSSDSVESVRILNDTNAPSLSEEAMQALQIVRNVNTDTRALMEFKAGVRNKMNQMNQKSSYIGVRKRPRGKYAAEIRDTTRRGRRVWLGTFDSVEDAALAYDQAAFSMRGNNVVVNFSVQRVKGSLQEIQYDCRGVKCVEVFKGFYETKTKHRKLIWIYSLGICNIIGKFEPKTIELIVSAYQDAARLLFNTADKLSYSEKSL*