AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0759410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759410 MtrunA17_Chr3g0104071 54.167 72 8 1 57 103 117 188 3.71e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACATTCTGTTATATTT+TGG 0.175954 5_2:+15074343 Msa0759410:three_prime_UTR
ACACGGCCAGGGTTTGGTTT+TGG 0.303489 5_2:+15074418 Msa0759410:three_prime_UTR
CCTTTCTTCCTTTCCTGATC+AGG 0.333627 5_2:-15073507 None:intergenic
GTGAGTTCTTCTGTTTATAA+TGG 0.342042 5_2:+15073441 Msa0759410:CDS
ACTGCAAAGAGAGGCTCTTT+TGG 0.360910 5_2:+15073477 Msa0759410:CDS
GGAATTACACGGCCAGGGTT+TGG 0.400392 5_2:+15074412 Msa0759410:three_prime_UTR
GTGTGACCTGATGCATGTTT+TGG 0.403704 5_2:+15074301 Msa0759410:exon
AAAATATAACAGAATGTAAG+AGG 0.414706 5_2:-15074341 None:intergenic
GATGGACTCATGGAGAATTA+AGG 0.420061 5_2:+15072983 Msa0759410:CDS
AGTAAATGTCTTGAAGGTTA+AGG 0.448911 5_2:+15074451 Msa0759410:three_prime_UTR
AATTCTCCATGAGTCCATCT+TGG 0.454517 5_2:-15072979 None:intergenic
TCCATACCTATGTTTCTCTT+CGG 0.456234 5_2:-15073541 None:intergenic
CTATGTTTCTCTTCGGTCCA+TGG 0.458251 5_2:-15073534 None:intergenic
AAAATTGAATTTGAAGGCGG+TGG 0.501288 5_2:+15073933 Msa0759410:CDS
TTAAATGGAATTACACGGCC+AGG 0.504542 5_2:+15074406 Msa0759410:three_prime_UTR
ACCATTCCAAGATGGACTCA+TGG 0.532023 5_2:+15072973 Msa0759410:CDS
TCCATGAGTCCATCTTGGAA+TGG 0.533845 5_2:-15072974 None:intergenic
CCTGTACCAAAACATGCATC+AGG 0.538125 5_2:-15074307 None:intergenic
CCTGATCAGGAAAGGAAGAA+AGG 0.540469 5_2:+15073507 Msa0759410:CDS
ACAAACAAACAAAACCATAC+AGG 0.542095 5_2:-15072832 None:intergenic
TAGTAAATGCAAAAGAGATA+AGG 0.549691 5_2:-15074373 None:intergenic
TGTAGTAATTATGACGAGGT+TGG 0.550032 5_2:+15074276 Msa0759410:intron
AGAGGAATTACTGCAAAGAG+AGG 0.554018 5_2:+15073468 Msa0759410:CDS
ACAACAACAGCATGCAGCGA+TGG 0.560559 5_2:-15072942 None:intergenic
TCATGGCTAGATACTTGTGT+TGG 0.563631 5_2:-15073895 None:intergenic
ATGCAGCGATGGGACGATGA+AGG 0.564044 5_2:-15072931 None:intergenic
AACAGAATGTAAGAGGGAGC+TGG 0.571495 5_2:-15074334 None:intergenic
TAAATGGAATTACACGGCCA+GGG 0.581515 5_2:+15074407 Msa0759410:three_prime_UTR
AAAATTTAACCCCACCAGGA+TGG 0.592048 5_2:-15072801 None:intergenic
ATCGCTGCATGCTGTTGTTG+TGG 0.596388 5_2:+15072944 Msa0759410:CDS
GTAGATCTCCTGATCAGGAA+AGG 0.602196 5_2:+15073499 Msa0759410:CDS
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 5_2:+15073517 Msa0759410:CDS
CAACAACAGCATGCAGCGAT+GGG 0.607855 5_2:-15072941 None:intergenic
CATGGACCGAAGAGAAACAT+AGG 0.612819 5_2:+15073535 Msa0759410:CDS
GGTAGTAAACCATTCCAAGA+TGG 0.618983 5_2:+15072965 Msa0759410:CDS
AAATATAACAGAATGTAAGA+GGG 0.650335 5_2:-15074340 None:intergenic
TTCTTGTAGTAATTATGACG+AGG 0.655018 5_2:+15074272 Msa0759410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTAAGTTGTTGA+GGG + chr5_2:15073750-15073769 Msa0759410:intron 15.0%
!! AAGTAAAAAATTGAATTTGA+AGG + chr5_2:15073927-15073946 Msa0759410:CDS 15.0%
!!! GGAATTTAAATTTTTAAGAT+AGG - chr5_2:15073998-15074017 None:intergenic 15.0%
!!! TTGTTATTGATTGATATATA+CGG - chr5_2:15074220-15074239 None:intergenic 15.0%
!!! ATATTTATTTAAGTTGTTGA+GGG + chr5_2:15073750-15073769 Msa0759410:intron 15.0%
!! AAGTAAAAAATTGAATTTGA+AGG + chr5_2:15073927-15073946 Msa0759410:CDS 15.0%
!!! GGAATTTAAATTTTTAAGAT+AGG - chr5_2:15073998-15074017 None:intergenic 15.0%
!!! TTGTTATTGATTGATATATA+CGG - chr5_2:15074220-15074239 None:intergenic 15.0%
!! AAAAACAGCAGTAAAAAAAT+AGG - chr5_2:15073049-15073068 None:intergenic 20.0%
!! GAAATTTATGAGAATTGATA+TGG - chr5_2:15073133-15073152 None:intergenic 20.0%
!! TGATGAATCATATAAGAAAT+TGG + chr5_2:15073335-15073354 Msa0759410:intron 20.0%
!! TTTACCCTTTACTTTATATT+AGG + chr5_2:15073419-15073438 Msa0759410:intron 20.0%
!!! GATATTTATTTAAGTTGTTG+AGG + chr5_2:15073749-15073768 Msa0759410:intron 20.0%
!!! TATTTATTTAAGTTGTTGAG+GGG + chr5_2:15073751-15073770 Msa0759410:intron 20.0%
!!! ATTGACATGTTATTTCTATT+GGG + chr5_2:15073808-15073827 Msa0759410:intron 20.0%
!! TAAAAAATTGAATTTGAAGG+CGG + chr5_2:15073930-15073949 Msa0759410:CDS 20.0%
!!! ACAACTTTACTATTTTTGTA+TGG + chr5_2:15074034-15074053 Msa0759410:intron 20.0%
!! AAATATAACAGAATGTAAGA+GGG - chr5_2:15074343-15074362 None:intergenic 20.0%
!! AAAATATAACAGAATGTAAG+AGG - chr5_2:15074344-15074363 None:intergenic 20.0%
!!! TCTTACATTCTGTTATATTT+TGG + chr5_2:15074343-15074362 Msa0759410:three_prime_UTR 20.0%
!!! TACTAAGTTGATCTTTTAAA+TGG + chr5_2:15074391-15074410 Msa0759410:three_prime_UTR 20.0%
!!! ATCTTTTAAATGGAATTACA+CGG + chr5_2:15074401-15074420 Msa0759410:three_prime_UTR 20.0%
!! AAAAATAGTAAATGTCTTGA+AGG + chr5_2:15074445-15074464 Msa0759410:three_prime_UTR 20.0%
!! AAAAACAGCAGTAAAAAAAT+AGG - chr5_2:15073049-15073068 None:intergenic 20.0%
!! GAAATTTATGAGAATTGATA+TGG - chr5_2:15073133-15073152 None:intergenic 20.0%
!! TGATGAATCATATAAGAAAT+TGG + chr5_2:15073335-15073354 Msa0759410:intron 20.0%
!! TTTACCCTTTACTTTATATT+AGG + chr5_2:15073419-15073438 Msa0759410:intron 20.0%
!!! GATATTTATTTAAGTTGTTG+AGG + chr5_2:15073749-15073768 Msa0759410:intron 20.0%
!!! TATTTATTTAAGTTGTTGAG+GGG + chr5_2:15073751-15073770 Msa0759410:intron 20.0%
!!! ATTGACATGTTATTTCTATT+GGG + chr5_2:15073808-15073827 Msa0759410:intron 20.0%
!! TAAAAAATTGAATTTGAAGG+CGG + chr5_2:15073930-15073949 Msa0759410:CDS 20.0%
!!! ACAACTTTACTATTTTTGTA+TGG + chr5_2:15074034-15074053 Msa0759410:intron 20.0%
!! AAATATAACAGAATGTAAGA+GGG - chr5_2:15074343-15074362 None:intergenic 20.0%
!! AAAATATAACAGAATGTAAG+AGG - chr5_2:15074344-15074363 None:intergenic 20.0%
!!! TCTTACATTCTGTTATATTT+TGG + chr5_2:15074343-15074362 Msa0759410:three_prime_UTR 20.0%
!!! TACTAAGTTGATCTTTTAAA+TGG + chr5_2:15074391-15074410 Msa0759410:three_prime_UTR 20.0%
!!! ATCTTTTAAATGGAATTACA+CGG + chr5_2:15074401-15074420 Msa0759410:three_prime_UTR 20.0%
!! AAAAATAGTAAATGTCTTGA+AGG + chr5_2:15074445-15074464 Msa0759410:three_prime_UTR 20.0%
! ATTTCTATCATCTCCATAAT+CGG + chr5_2:15073148-15073167 Msa0759410:intron 25.0%
!! AATGCATTTTATTCCGATTA+TGG - chr5_2:15073164-15073183 None:intergenic 25.0%
! AAATGCCTATGAGTAAAATT+TGG + chr5_2:15073198-15073217 Msa0759410:intron 25.0%
!! AAACACCAAATTTTACTCAT+AGG - chr5_2:15073206-15073225 None:intergenic 25.0%
!! TGTTTAGCATCATATGTTTT+TGG + chr5_2:15073221-15073240 Msa0759410:intron 25.0%
!!! GAAGTTGATGTTTGTAATAT+AGG + chr5_2:15073357-15073376 Msa0759410:intron 25.0%
!!! GCTGGTTTAGTTATAATTTT+TGG + chr5_2:15073381-15073400 Msa0759410:intron 25.0%
! CTCACCTAATATAAAGTAAA+GGG - chr5_2:15073426-15073445 None:intergenic 25.0%
! ACTCACCTAATATAAAGTAA+AGG - chr5_2:15073427-15073446 None:intergenic 25.0%
!!! TCTGTTTATAATGGTTTTAG+AGG + chr5_2:15073450-15073469 Msa0759410:CDS 25.0%
!!! TGGTCTTTTACATTTTGATA+TGG + chr5_2:15073681-15073700 Msa0759410:intron 25.0%
!!! CATTGACATGTTATTTCTAT+TGG + chr5_2:15073807-15073826 Msa0759410:intron 25.0%
! AATATACATGATAGCTTAGT+AGG - chr5_2:15074065-15074084 None:intergenic 25.0%
!! CATTGGTAATAGATGATAAA+TGG - chr5_2:15074089-15074108 None:intergenic 25.0%
! TCATCTTACTACAATATCAT+TGG - chr5_2:15074106-15074125 None:intergenic 25.0%
! ATATTGTAGTAAGATGAGTA+TGG + chr5_2:15074109-15074128 Msa0759410:intron 25.0%
!! TTGACTTAACTTCATTTTAG+TGG + chr5_2:15074176-15074195 Msa0759410:intron 25.0%
!!! TGACTTAACTTCATTTTAGT+GGG + chr5_2:15074177-15074196 Msa0759410:intron 25.0%
! TAGTAAATGCAAAAGAGATA+AGG - chr5_2:15074376-15074395 None:intergenic 25.0%
! ATTTCTATCATCTCCATAAT+CGG + chr5_2:15073148-15073167 Msa0759410:intron 25.0%
!! AATGCATTTTATTCCGATTA+TGG - chr5_2:15073164-15073183 None:intergenic 25.0%
! AAATGCCTATGAGTAAAATT+TGG + chr5_2:15073198-15073217 Msa0759410:intron 25.0%
!! AAACACCAAATTTTACTCAT+AGG - chr5_2:15073206-15073225 None:intergenic 25.0%
!! TGTTTAGCATCATATGTTTT+TGG + chr5_2:15073221-15073240 Msa0759410:intron 25.0%
!!! GAAGTTGATGTTTGTAATAT+AGG + chr5_2:15073357-15073376 Msa0759410:intron 25.0%
!!! GCTGGTTTAGTTATAATTTT+TGG + chr5_2:15073381-15073400 Msa0759410:intron 25.0%
! CTCACCTAATATAAAGTAAA+GGG - chr5_2:15073426-15073445 None:intergenic 25.0%
! ACTCACCTAATATAAAGTAA+AGG - chr5_2:15073427-15073446 None:intergenic 25.0%
!!! TCTGTTTATAATGGTTTTAG+AGG + chr5_2:15073450-15073469 Msa0759410:CDS 25.0%
!!! TGGTCTTTTACATTTTGATA+TGG + chr5_2:15073681-15073700 Msa0759410:intron 25.0%
!!! CATTGACATGTTATTTCTAT+TGG + chr5_2:15073807-15073826 Msa0759410:intron 25.0%
! AATATACATGATAGCTTAGT+AGG - chr5_2:15074065-15074084 None:intergenic 25.0%
!! CATTGGTAATAGATGATAAA+TGG - chr5_2:15074089-15074108 None:intergenic 25.0%
! TCATCTTACTACAATATCAT+TGG - chr5_2:15074106-15074125 None:intergenic 25.0%
! ATATTGTAGTAAGATGAGTA+TGG + chr5_2:15074109-15074128 Msa0759410:intron 25.0%
!! TTGACTTAACTTCATTTTAG+TGG + chr5_2:15074176-15074195 Msa0759410:intron 25.0%
!!! TGACTTAACTTCATTTTAGT+GGG + chr5_2:15074177-15074196 Msa0759410:intron 25.0%
! TAGTAAATGCAAAAGAGATA+AGG - chr5_2:15074376-15074395 None:intergenic 25.0%
! AATTTTTGAATCGTCCTGTA+TGG + chr5_2:15072818-15072837 Msa0759410:exon 30.0%
ACAAACAAACAAAACCATAC+AGG - chr5_2:15072835-15072854 None:intergenic 30.0%
!!! TGTATTGATTGCAGTTTTGT+CGG + chr5_2:15072852-15072871 Msa0759410:CDS 30.0%
!!! TTTTTTAGTTGTGTTCTTGC+TGG + chr5_2:15073064-15073083 Msa0759410:intron 30.0%
TATGAGAATTGATATGGTTG+AGG - chr5_2:15073127-15073146 None:intergenic 30.0%
GTATCATTTCAGATGCTTTA+TGG - chr5_2:15073294-15073313 None:intergenic 30.0%
! AAAGCATCTGAAATGATACA+TGG + chr5_2:15073295-15073314 Msa0759410:intron 30.0%
GTGAGTTCTTCTGTTTATAA+TGG + chr5_2:15073441-15073460 Msa0759410:CDS 30.0%
ATACGTAGTTATTGAGAGTT+AGG + chr5_2:15073640-15073659 Msa0759410:intron 30.0%
ATTTCTATTGGGTCTGAAAA+AGG + chr5_2:15073819-15073838 Msa0759410:intron 30.0%
AAAAGGATGGAAAAGGTAAT+TGG + chr5_2:15073836-15073855 Msa0759410:intron 30.0%
TGATCACAAAATTCCTTGAA+AGG - chr5_2:15073867-15073886 None:intergenic 30.0%
! CAAGGAATTTTGTGATCATT+AGG + chr5_2:15073869-15073888 Msa0759410:intron 30.0%
!! TTTTACTTGTTGAAGCTTCA+TGG - chr5_2:15073915-15073934 None:intergenic 30.0%
! AGTAAAGTTGTCTTCTAGAA+AGG - chr5_2:15074025-15074044 None:intergenic 30.0%
TTCTTGTAGTAATTATGACG+AGG + chr5_2:15074272-15074291 Msa0759410:intron 30.0%
AGTAAATGTCTTGAAGGTTA+AGG + chr5_2:15074451-15074470 Msa0759410:three_prime_UTR 30.0%
! AATTTTTGAATCGTCCTGTA+TGG + chr5_2:15072818-15072837 Msa0759410:exon 30.0%
ACAAACAAACAAAACCATAC+AGG - chr5_2:15072835-15072854 None:intergenic 30.0%
!!! TGTATTGATTGCAGTTTTGT+CGG + chr5_2:15072852-15072871 Msa0759410:CDS 30.0%
!!! TTTTTTAGTTGTGTTCTTGC+TGG + chr5_2:15073064-15073083 Msa0759410:intron 30.0%
TATGAGAATTGATATGGTTG+AGG - chr5_2:15073127-15073146 None:intergenic 30.0%
GTATCATTTCAGATGCTTTA+TGG - chr5_2:15073294-15073313 None:intergenic 30.0%
! AAAGCATCTGAAATGATACA+TGG + chr5_2:15073295-15073314 Msa0759410:intron 30.0%
GTGAGTTCTTCTGTTTATAA+TGG + chr5_2:15073441-15073460 Msa0759410:CDS 30.0%
ATACGTAGTTATTGAGAGTT+AGG + chr5_2:15073640-15073659 Msa0759410:intron 30.0%
ATTTCTATTGGGTCTGAAAA+AGG + chr5_2:15073819-15073838 Msa0759410:intron 30.0%
AAAAGGATGGAAAAGGTAAT+TGG + chr5_2:15073836-15073855 Msa0759410:intron 30.0%
TGATCACAAAATTCCTTGAA+AGG - chr5_2:15073867-15073886 None:intergenic 30.0%
! CAAGGAATTTTGTGATCATT+AGG + chr5_2:15073869-15073888 Msa0759410:intron 30.0%
!! TTTTACTTGTTGAAGCTTCA+TGG - chr5_2:15073915-15073934 None:intergenic 30.0%
! AGTAAAGTTGTCTTCTAGAA+AGG - chr5_2:15074025-15074044 None:intergenic 30.0%
TTCTTGTAGTAATTATGACG+AGG + chr5_2:15074272-15074291 Msa0759410:intron 30.0%
AGTAAATGTCTTGAAGGTTA+AGG + chr5_2:15074451-15074470 Msa0759410:three_prime_UTR 30.0%
TTCAAAAATTTAACCCCACC+AGG - chr5_2:15072808-15072827 None:intergenic 35.0%
!!! GTATTGATTGCAGTTTTGTC+GGG + chr5_2:15072853-15072872 Msa0759410:CDS 35.0%
AAAGAATAAGGAATGGCGAA+TGG - chr5_2:15073099-15073118 None:intergenic 35.0%
ATTCGCCATTCCTTATTCTT+TGG + chr5_2:15073098-15073117 Msa0759410:intron 35.0%
ATCGGAATAAAATGCATTGC+AGG + chr5_2:15073166-15073185 Msa0759410:intron 35.0%
GATGTTTGTAATATAGGAGC+TGG + chr5_2:15073363-15073382 Msa0759410:intron 35.0%
TCCATACCTATGTTTCTCTT+CGG - chr5_2:15073544-15073563 None:intergenic 35.0%
GAGAGTTAGGTATTTCCTAA+TGG + chr5_2:15073653-15073672 Msa0759410:intron 35.0%
TAAAAGACCACAACACCATT+AGG - chr5_2:15073671-15073690 None:intergenic 35.0%
GTAATTGGAGAAACCTTTCA+AGG + chr5_2:15073851-15073870 Msa0759410:intron 35.0%
AAAATTGAATTTGAAGGCGG+TGG + chr5_2:15073933-15073952 Msa0759410:CDS 35.0%
GTGTTGTCCTTATGCTTAAA+AGG + chr5_2:15073967-15073986 Msa0759410:intron 35.0%
TTGTCCTTATGCTTAAAAGG+TGG + chr5_2:15073970-15073989 Msa0759410:intron 35.0%
! GTTGTCTTCTAGAAAGGAAA+AGG - chr5_2:15074019-15074038 None:intergenic 35.0%
AACTCAAAATCTCCAGTCTT+AGG + chr5_2:15074133-15074152 Msa0759410:intron 35.0%
TGTAGTAATTATGACGAGGT+TGG + chr5_2:15074276-15074295 Msa0759410:intron 35.0%
TTCAAAAATTTAACCCCACC+AGG - chr5_2:15072808-15072827 None:intergenic 35.0%
!!! GTATTGATTGCAGTTTTGTC+GGG + chr5_2:15072853-15072872 Msa0759410:CDS 35.0%
AAAGAATAAGGAATGGCGAA+TGG - chr5_2:15073099-15073118 None:intergenic 35.0%
ATTCGCCATTCCTTATTCTT+TGG + chr5_2:15073098-15073117 Msa0759410:intron 35.0%
ATCGGAATAAAATGCATTGC+AGG + chr5_2:15073166-15073185 Msa0759410:intron 35.0%
GATGTTTGTAATATAGGAGC+TGG + chr5_2:15073363-15073382 Msa0759410:intron 35.0%
TCCATACCTATGTTTCTCTT+CGG - chr5_2:15073544-15073563 None:intergenic 35.0%
GAGAGTTAGGTATTTCCTAA+TGG + chr5_2:15073653-15073672 Msa0759410:intron 35.0%
TAAAAGACCACAACACCATT+AGG - chr5_2:15073671-15073690 None:intergenic 35.0%
GTAATTGGAGAAACCTTTCA+AGG + chr5_2:15073851-15073870 Msa0759410:intron 35.0%
AAAATTGAATTTGAAGGCGG+TGG + chr5_2:15073933-15073952 Msa0759410:CDS 35.0%
GTGTTGTCCTTATGCTTAAA+AGG + chr5_2:15073967-15073986 Msa0759410:intron 35.0%
TTGTCCTTATGCTTAAAAGG+TGG + chr5_2:15073970-15073989 Msa0759410:intron 35.0%
! GTTGTCTTCTAGAAAGGAAA+AGG - chr5_2:15074019-15074038 None:intergenic 35.0%
AACTCAAAATCTCCAGTCTT+AGG + chr5_2:15074133-15074152 Msa0759410:intron 35.0%
TGTAGTAATTATGACGAGGT+TGG + chr5_2:15074276-15074295 Msa0759410:intron 35.0%
AAAATTTAACCCCACCAGGA+TGG - chr5_2:15072804-15072823 None:intergenic 40.0%
GGTAGTAAACCATTCCAAGA+TGG + chr5_2:15072965-15072984 Msa0759410:CDS 40.0%
AATTCTCCATGAGTCCATCT+TGG - chr5_2:15072982-15073001 None:intergenic 40.0%
! GATGGACTCATGGAGAATTA+AGG + chr5_2:15072983-15073002 Msa0759410:CDS 40.0%
ACTCATGGAGAATTAAGGTC+AGG + chr5_2:15072988-15073007 Msa0759410:intron 40.0%
GGCTTCCAAAGAATAAGGAA+TGG - chr5_2:15073106-15073125 None:intergenic 40.0%
GTTGAGGCTTCCAAAGAATA+AGG - chr5_2:15073111-15073130 None:intergenic 40.0%
AGAGGAATTACTGCAAAGAG+AGG + chr5_2:15073468-15073487 Msa0759410:CDS 40.0%
! TTTTGGTAGATCTCCTGATC+AGG + chr5_2:15073494-15073513 Msa0759410:CDS 40.0%
ACCGAAGAGAAACATAGGTA+TGG + chr5_2:15073540-15073559 Msa0759410:intron 40.0%
! GGTATTTCCTAATGGTGTTG+TGG + chr5_2:15073661-15073680 Msa0759410:intron 40.0%
CTATTGGGTCTGAAAAAGGA+TGG + chr5_2:15073823-15073842 Msa0759410:intron 40.0%
GGTCTGAAAAAGGATGGAAA+AGG + chr5_2:15073829-15073848 Msa0759410:intron 40.0%
TCATGGCTAGATACTTGTGT+TGG - chr5_2:15073898-15073917 None:intergenic 40.0%
GCATAAGGACAACACTTACA+TGG - chr5_2:15073962-15073981 None:intergenic 40.0%
! GGAACCACCTTTTAAGCATA+AGG - chr5_2:15073977-15073996 None:intergenic 40.0%
TCAAAATCTCCAGTCTTAGG+AGG + chr5_2:15074136-15074155 Msa0759410:intron 40.0%
CAAAATCTCCAGTCTTAGGA+GGG + chr5_2:15074137-15074156 Msa0759410:intron 40.0%
! TATTTTGTCCCTCCTAAGAC+TGG - chr5_2:15074148-15074167 None:intergenic 40.0%
TTAAATGGAATTACACGGCC+AGG + chr5_2:15074406-15074425 Msa0759410:three_prime_UTR 40.0%
TAAATGGAATTACACGGCCA+GGG + chr5_2:15074407-15074426 Msa0759410:three_prime_UTR 40.0%
! TTTTGTCCAAAACCAAACCC+TGG - chr5_2:15074427-15074446 None:intergenic 40.0%
! TGCCATGTTTTTCCAGTACT+GGG - chr5_2:15074504-15074523 None:intergenic 40.0%
! TTGCCATGTTTTTCCAGTAC+TGG - chr5_2:15074505-15074524 None:intergenic 40.0%
AAAATTTAACCCCACCAGGA+TGG - chr5_2:15072804-15072823 None:intergenic 40.0%
GGTAGTAAACCATTCCAAGA+TGG + chr5_2:15072965-15072984 Msa0759410:CDS 40.0%
AATTCTCCATGAGTCCATCT+TGG - chr5_2:15072982-15073001 None:intergenic 40.0%
! GATGGACTCATGGAGAATTA+AGG + chr5_2:15072983-15073002 Msa0759410:CDS 40.0%
ACTCATGGAGAATTAAGGTC+AGG + chr5_2:15072988-15073007 Msa0759410:intron 40.0%
GGCTTCCAAAGAATAAGGAA+TGG - chr5_2:15073106-15073125 None:intergenic 40.0%
GTTGAGGCTTCCAAAGAATA+AGG - chr5_2:15073111-15073130 None:intergenic 40.0%
AGAGGAATTACTGCAAAGAG+AGG + chr5_2:15073468-15073487 Msa0759410:CDS 40.0%
! TTTTGGTAGATCTCCTGATC+AGG + chr5_2:15073494-15073513 Msa0759410:CDS 40.0%
ACCGAAGAGAAACATAGGTA+TGG + chr5_2:15073540-15073559 Msa0759410:intron 40.0%
! GGTATTTCCTAATGGTGTTG+TGG + chr5_2:15073661-15073680 Msa0759410:intron 40.0%
CTATTGGGTCTGAAAAAGGA+TGG + chr5_2:15073823-15073842 Msa0759410:intron 40.0%
GGTCTGAAAAAGGATGGAAA+AGG + chr5_2:15073829-15073848 Msa0759410:intron 40.0%
TCATGGCTAGATACTTGTGT+TGG - chr5_2:15073898-15073917 None:intergenic 40.0%
GCATAAGGACAACACTTACA+TGG - chr5_2:15073962-15073981 None:intergenic 40.0%
! GGAACCACCTTTTAAGCATA+AGG - chr5_2:15073977-15073996 None:intergenic 40.0%
TCAAAATCTCCAGTCTTAGG+AGG + chr5_2:15074136-15074155 Msa0759410:intron 40.0%
CAAAATCTCCAGTCTTAGGA+GGG + chr5_2:15074137-15074156 Msa0759410:intron 40.0%
! TATTTTGTCCCTCCTAAGAC+TGG - chr5_2:15074148-15074167 None:intergenic 40.0%
TTAAATGGAATTACACGGCC+AGG + chr5_2:15074406-15074425 Msa0759410:three_prime_UTR 40.0%
TAAATGGAATTACACGGCCA+GGG + chr5_2:15074407-15074426 Msa0759410:three_prime_UTR 40.0%
! TTTTGTCCAAAACCAAACCC+TGG - chr5_2:15074427-15074446 None:intergenic 40.0%
! TGCCATGTTTTTCCAGTACT+GGG - chr5_2:15074504-15074523 None:intergenic 40.0%
! TTGCCATGTTTTTCCAGTAC+TGG - chr5_2:15074505-15074524 None:intergenic 40.0%
!! TTCGTTTTTGCCATCCTGGT+GGG + chr5_2:15072791-15072810 Msa0759410:five_prime_UTR 45.0%
! ACCATTCCAAGATGGACTCA+TGG + chr5_2:15072973-15072992 Msa0759410:CDS 45.0%
TCCATGAGTCCATCTTGGAA+TGG - chr5_2:15072977-15072996 None:intergenic 45.0%
! ACTGCAAAGAGAGGCTCTTT+TGG + chr5_2:15073477-15073496 Msa0759410:CDS 45.0%
GTAGATCTCCTGATCAGGAA+AGG + chr5_2:15073499-15073518 Msa0759410:CDS 45.0%
CCTTTCTTCCTTTCCTGATC+AGG - chr5_2:15073510-15073529 None:intergenic 45.0%
CCTGATCAGGAAAGGAAGAA+AGG + chr5_2:15073507-15073526 Msa0759410:CDS 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr5_2:15073517-15073536 Msa0759410:CDS 45.0%
CTATGTTTCTCTTCGGTCCA+TGG - chr5_2:15073537-15073556 None:intergenic 45.0%
CATGGACCGAAGAGAAACAT+AGG + chr5_2:15073535-15073554 Msa0759410:CDS 45.0%
! GTGTGACCTGATGCATGTTT+TGG + chr5_2:15074301-15074320 Msa0759410:exon 45.0%
CCTGTACCAAAACATGCATC+AGG - chr5_2:15074310-15074329 None:intergenic 45.0%
!!! CCTGATGCATGTTTTGGTAC+AGG + chr5_2:15074307-15074326 Msa0759410:exon 45.0%
AACAGAATGTAAGAGGGAGC+TGG - chr5_2:15074337-15074356 None:intergenic 45.0%
! TTTTCCATCACTCCCAGTAC+TGG + chr5_2:15074489-15074508 Msa0759410:three_prime_UTR 45.0%
!! TTTTCCAGTACTGGGAGTGA+TGG - chr5_2:15074496-15074515 None:intergenic 45.0%
! CTCCCAGTACTGGAAAAACA+TGG + chr5_2:15074499-15074518 Msa0759410:three_prime_UTR 45.0%
!! TTCGTTTTTGCCATCCTGGT+GGG + chr5_2:15072791-15072810 Msa0759410:five_prime_UTR 45.0%
! ACCATTCCAAGATGGACTCA+TGG + chr5_2:15072973-15072992 Msa0759410:CDS 45.0%
TCCATGAGTCCATCTTGGAA+TGG - chr5_2:15072977-15072996 None:intergenic 45.0%
! ACTGCAAAGAGAGGCTCTTT+TGG + chr5_2:15073477-15073496 Msa0759410:CDS 45.0%
GTAGATCTCCTGATCAGGAA+AGG + chr5_2:15073499-15073518 Msa0759410:CDS 45.0%
CCTTTCTTCCTTTCCTGATC+AGG - chr5_2:15073510-15073529 None:intergenic 45.0%
CCTGATCAGGAAAGGAAGAA+AGG + chr5_2:15073507-15073526 Msa0759410:CDS 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr5_2:15073517-15073536 Msa0759410:CDS 45.0%
CTATGTTTCTCTTCGGTCCA+TGG - chr5_2:15073537-15073556 None:intergenic 45.0%
CATGGACCGAAGAGAAACAT+AGG + chr5_2:15073535-15073554 Msa0759410:CDS 45.0%
! GTGTGACCTGATGCATGTTT+TGG + chr5_2:15074301-15074320 Msa0759410:exon 45.0%
CCTGTACCAAAACATGCATC+AGG - chr5_2:15074310-15074329 None:intergenic 45.0%
!!! CCTGATGCATGTTTTGGTAC+AGG + chr5_2:15074307-15074326 Msa0759410:exon 45.0%
AACAGAATGTAAGAGGGAGC+TGG - chr5_2:15074337-15074356 None:intergenic 45.0%
! TTTTCCATCACTCCCAGTAC+TGG + chr5_2:15074489-15074508 Msa0759410:three_prime_UTR 45.0%
!! TTTTCCAGTACTGGGAGTGA+TGG - chr5_2:15074496-15074515 None:intergenic 45.0%
! CTCCCAGTACTGGAAAAACA+TGG + chr5_2:15074499-15074518 Msa0759410:three_prime_UTR 45.0%
!! TCGTTTTTGCCATCCTGGTG+GGG + chr5_2:15072792-15072811 Msa0759410:five_prime_UTR 50.0%
CAACAACAGCATGCAGCGAT+GGG - chr5_2:15072944-15072963 None:intergenic 50.0%
ACAACAACAGCATGCAGCGA+TGG - chr5_2:15072945-15072964 None:intergenic 50.0%
ATCGCTGCATGCTGTTGTTG+TGG + chr5_2:15072944-15072963 Msa0759410:CDS 50.0%
!! TCGTTTTTGCCATCCTGGTG+GGG + chr5_2:15072792-15072811 Msa0759410:five_prime_UTR 50.0%
CAACAACAGCATGCAGCGAT+GGG - chr5_2:15072944-15072963 None:intergenic 50.0%
ACAACAACAGCATGCAGCGA+TGG - chr5_2:15072945-15072964 None:intergenic 50.0%
ATCGCTGCATGCTGTTGTTG+TGG + chr5_2:15072944-15072963 Msa0759410:CDS 50.0%
ATGCAGCGATGGGACGATGA+AGG - chr5_2:15072934-15072953 None:intergenic 55.0%
GGAATTACACGGCCAGGGTT+TGG + chr5_2:15074412-15074431 Msa0759410:three_prime_UTR 55.0%
!! ACACGGCCAGGGTTTGGTTT+TGG + chr5_2:15074418-15074437 Msa0759410:three_prime_UTR 55.0%
ATGCAGCGATGGGACGATGA+AGG - chr5_2:15072934-15072953 None:intergenic 55.0%
GGAATTACACGGCCAGGGTT+TGG + chr5_2:15074412-15074431 Msa0759410:three_prime_UTR 55.0%
!! ACACGGCCAGGGTTTGGTTT+TGG + chr5_2:15074418-15074437 Msa0759410:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 15072791 15074575 15072791 ID=Msa0759410;Name=Msa0759410
chr5_2 mRNA 15072791 15074575 15072791 ID=Msa0759410-mRNA-1;Parent=Msa0759410;Name=Msa0759410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=46|0.66|0.75|1|0.66|0.75|4|264|128
chr5_2 exon 15072791 15073004 15072791 ID=Msa0759410-mRNA-1:exon:6825;Parent=Msa0759410-mRNA-1
chr5_2 exon 15073441 15073556 15073441 ID=Msa0759410-mRNA-1:exon:6826;Parent=Msa0759410-mRNA-1
chr5_2 exon 15073891 15073962 15073891 ID=Msa0759410-mRNA-1:exon:6827;Parent=Msa0759410-mRNA-1
chr5_2 exon 15074281 15074575 15074281 ID=Msa0759410-mRNA-1:exon:6828;Parent=Msa0759410-mRNA-1
chr5_2 five_prime_UTR 15072791 15072836 15072791 ID=Msa0759410-mRNA-1:five_prime_utr;Parent=Msa0759410-mRNA-1
chr5_2 CDS 15072837 15073004 15072837 ID=Msa0759410-mRNA-1:cds;Parent=Msa0759410-mRNA-1
chr5_2 CDS 15073441 15073556 15073441 ID=Msa0759410-mRNA-1:cds;Parent=Msa0759410-mRNA-1
chr5_2 CDS 15073891 15073962 15073891 ID=Msa0759410-mRNA-1:cds;Parent=Msa0759410-mRNA-1
chr5_2 CDS 15074281 15074311 15074281 ID=Msa0759410-mRNA-1:cds;Parent=Msa0759410-mRNA-1
chr5_2 three_prime_UTR 15074312 15074575 15074312 ID=Msa0759410-mRNA-1:three_prime_utr;Parent=Msa0759410-mRNA-1
Gene Sequence

>Msa0759410

ATGGTTTTGTTTGTTTGTATTGATTGCAGTTTTGTCGGGTTGTTCATGTGTGCAACTTTCAGATTGTATTTAAGCTCGCGTTGTGTGTGTTTTTCCTTCATCGTCCCATCGCTGCATGCTGTTGTTGTGGTAGTAAACCATTCCAAGATGGACTCATGGAGAATTAAGGTGAGTTCTTCTGTTTATAATGGTTTTAGAGGAATTACTGCAAAGAGAGGCTCTTTTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAGAAACATAGGACGCCAACACAAGTATCTAGCCATGAAGCTTCAACAAGTAAAAAATTGAATTTGAAGGCGGTGGCAGCCATTAATTATGACGAGGTTGGTAGTGTGACCTGA

Protein sequence

>Msa0759410

MVLFVCIDCSFVGLFMCATFRLYLSSRCVCFSFIVPSLHAVVVVVNHSKMDSWRIKVSSSVYNGFRGITAKRGSFGRSPDQERKKGVPWTEEKHRTPTQVSSHEASTSKKLNLKAVAAINYDEVGSVT*