AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964230 MtrunA17_Chr6g0484111 93.712 493 29 1 1 491 1 493 0.0 970
Msa0964230 MtrunA17_Chr6g0484131 92.292 493 28 2 1 491 1 485 0.0 943
Msa0964230 MtrunA17_Chr6g0484121 91.278 493 33 2 1 491 1 485 0.0 933
Msa0964230 MtrunA17_Chr8g0391221 62.994 481 165 10 1 476 1 473 0.0 598
Msa0964230 MtrunA17_Chr8g0391211 62.020 495 172 13 1 489 72 556 0.0 579
Msa0964230 MtrunA17_Chr4g0072691 46.770 387 193 7 31 412 4 382 1.20e-114 350
Msa0964230 MtrunA17_Chr4g0048161 46.582 395 195 8 2 390 13 397 2.49e-113 348
Msa0964230 MtrunA17_Chr2g0281171 45.202 396 202 7 1 390 12 398 2.28e-112 345
Msa0964230 MtrunA17_Chr2g0304831 41.348 445 234 9 4 440 11 436 1.39e-106 329
Msa0964230 MtrunA17_Chr4g0059411 46.732 306 154 7 14 318 9 306 1.30e-80 260
Msa0964230 MtrunA17_Chr7g0271691 34.857 350 209 9 50 393 44 380 5.62e-51 181
Msa0964230 MtrunA17_Chr7g0271671 33.333 342 215 9 46 381 56 390 2.05e-45 167
Msa0964230 MtrunA17_Chr7g0271681 35.593 295 177 7 92 379 10 298 5.03e-43 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964230 AT1G73805.1 49.167 480 210 11 1 476 1 450 4.71e-147 429
Msa0964230 AT5G57580.1 47.258 383 185 7 9 385 17 388 1.63e-113 349
Msa0964230 AT4G25800.1 45.570 395 195 8 4 390 2 384 2.12e-109 337
Msa0964230 AT4G25800.2 45.570 395 195 8 4 390 2 384 2.12e-109 337
Msa0964230 AT2G18750.3 42.067 416 228 7 4 416 16 421 1.09e-107 333
Msa0964230 AT2G18750.2 42.067 416 228 7 4 416 16 421 1.09e-107 333
Msa0964230 AT2G18750.1 42.067 416 228 7 4 416 16 421 1.09e-107 333
Msa0964230 AT2G24300.3 42.784 388 213 6 4 387 7 389 1.60e-96 304
Msa0964230 AT2G24300.2 42.784 388 213 6 4 387 3 385 1.85e-96 303
Msa0964230 AT4G31000.1 40.984 427 229 11 11 425 13 428 4.60e-95 299
Msa0964230 AT2G24300.1 44.012 334 180 5 58 387 8 338 5.25e-85 272
Msa0964230 AT5G62570.4 38.400 375 206 9 1 366 1 359 9.60e-85 266
Msa0964230 AT5G62570.1 37.405 393 221 9 1 384 1 377 1.83e-84 270
Msa0964230 AT5G62570.2 38.950 362 200 8 32 384 13 362 3.48e-82 263
Msa0964230 AT4G31000.2 38.259 379 198 10 58 425 54 407 1.54e-71 237
Msa0964230 AT5G62570.3 40.264 303 161 7 1 298 1 288 2.66e-68 221
Msa0964230 AT5G26920.3 35.000 360 214 7 29 384 24 367 8.53e-68 224
Msa0964230 AT5G26920.1 35.278 360 213 8 29 384 24 367 8.11e-67 225
Msa0964230 AT5G26920.2 35.000 360 206 9 29 384 24 359 1.61e-63 216

Find 136 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTTTGACACACTATTT+AGG 0.149643 6_3:+90616090 None:intergenic
TAAAATTTGTAGGAATTTAA+TGG 0.161623 6_3:+90616211 None:intergenic
ACAACAATCTCTAGCTTTAT+AGG 0.214346 6_3:+90619488 None:intergenic
CTAGAGATTGTTGTACTTGA+TGG 0.248608 6_3:-90619479 Msa0964230:CDS
TTCGACAACTCAGATTTATT+TGG 0.254774 6_3:-90616328 Msa0964230:three_prime_UTR
GAAGACTTGTTGGAACAATT+TGG 0.268874 6_3:+90619516 None:intergenic
GCTTTAATTAATTTGCATAT+TGG 0.279068 6_3:+90617578 None:intergenic
ACATCAAAACCTTAACTCTT+TGG 0.284205 6_3:-90622128 Msa0964230:five_prime_UTR
AGTTTCATACCTGTGAAAAT+TGG 0.291885 6_3:+90620840 None:intergenic
TTGCTTACTATAAAATTTGT+AGG 0.293623 6_3:+90616201 None:intergenic
TGACTTTGACACACTATTTA+GGG 0.294787 6_3:+90616091 None:intergenic
TTATAGTAAGCAAATATAAT+AGG 0.302924 6_3:-90616191 Msa0964230:three_prime_UTR
ACTGTTGCTGGATGATTGTT+TGG 0.310236 6_3:+90616667 None:intergenic
TATGTTGTTGCTACTGTTGC+TGG 0.313492 6_3:+90616655 None:intergenic
TGCATTTGGTGTTGTGGTAT+AGG 0.314012 6_3:+90616528 None:intergenic
CACATGATGAAAACGAGAAT+TGG 0.319514 6_3:-90619448 Msa0964230:CDS
AATGCAAATGGATTTCCTTT+TGG 0.323071 6_3:-90616511 Msa0964230:CDS
TATCATCAGAATCAATATTA+TGG 0.324552 6_3:-90616634 Msa0964230:CDS
TCAGGCCCTAGGGACATTAA+TGG 0.328554 6_3:-90616445 Msa0964230:CDS
AACTTTAGATATATTAAATT+CGG 0.335431 6_3:-90616411 Msa0964230:exon
GAATTTAATGGAATAGGATT+TGG 0.336583 6_3:+90616223 None:intergenic
TTGTAGGAATTTAATGGAAT+AGG 0.340830 6_3:+90616217 None:intergenic
TATATTGTACCTTATTCATT+TGG 0.342595 6_3:+90617513 None:intergenic
GCAGAGCTATATAGACAAAT+TGG 0.351232 6_3:-90617369 Msa0964230:intron
TGGGAGAAGCATACACTAAA+TGG 0.359718 6_3:-90617346 Msa0964230:CDS
GTACTTGAGCCAAATGAATA+AGG 0.364385 6_3:-90617522 Msa0964230:intron
AAAGGAAATCCATTTGCATT+TGG 0.365748 6_3:+90616514 None:intergenic
GATTTCATTCGTTTGTCGTT+TGG 0.366146 6_3:+90622031 None:intergenic
GAAGAGGTGGATAGAGCAAT+TGG 0.372285 6_3:-90620969 Msa0964230:CDS
GACTGAGGCATTTGTTGTTA+AGG 0.376185 6_3:-90619210 Msa0964230:CDS
ATATATACCTCTCTTAGCTT+TGG 0.385685 6_3:+90618237 None:intergenic
CAACAATCTCTAGCTTTATA+GGG 0.387802 6_3:+90619489 None:intergenic
GCTTTCCACCTTCCATCAAT+AGG 0.389606 6_3:-90620941 Msa0964230:CDS
ATAGGGTAAGGAAGACTTGT+TGG 0.390458 6_3:+90619506 None:intergenic
AGATATATTAAATTCGGATC+TGG 0.393039 6_3:-90616405 Msa0964230:three_prime_UTR
CAGGCCCTAGGGACATTAAT+GGG 0.400626 6_3:-90616444 Msa0964230:CDS
GTTGTTGATCCCTTGGTGCT+TGG 0.401027 6_3:+90620901 None:intergenic
GTTTCATACCTGTGAAAATT+GGG 0.401177 6_3:+90620841 None:intergenic
GACATGACACCTTCAGGTTC+AGG 0.402336 6_3:-90616463 Msa0964230:CDS
GATGGGGACATGACACCTTC+AGG 0.405456 6_3:-90616469 Msa0964230:CDS
ATAGTGTGTCAAAGTCAAAA+TGG 0.408567 6_3:-90616085 Msa0964230:three_prime_UTR
TAATGAAGGTGACCTATTGA+TGG 0.408912 6_3:+90620929 None:intergenic
GTGTGGCGCCTAGAGAAGAT+AGG 0.412903 6_3:-90618345 Msa0964230:CDS
AGAGGTGGAATTGCACCAAT+AGG 0.414309 6_3:-90619341 Msa0964230:CDS
GAAGTTTAGAGTTGCAGTTA+AGG 0.415779 6_3:-90619276 Msa0964230:CDS
TACATAGTGAAGGAAAGAAC+TGG 0.419237 6_3:-90619404 Msa0964230:CDS
TACAACTCTCATTCAACAAA+AGG 0.425881 6_3:-90620872 Msa0964230:CDS
TCAACAAGACTTATGCAGAT+AGG 0.429243 6_3:+90619554 None:intergenic
TATTATGAACCAAAGAGTTA+AGG 0.431433 6_3:+90622119 None:intergenic
AAGGTTGGTTGTTGATCCCT+TGG 0.434839 6_3:+90620894 None:intergenic
GAGGTGGAATTGCACCAATA+GGG 0.441247 6_3:-90619340 Msa0964230:CDS
GCCATTTGTGCATTATTGCT+TGG 0.446016 6_3:+90616577 None:intergenic
TTGTCCATCCGGTCTTCAAT+CGG 0.447458 6_3:+90616276 None:intergenic
ATCTCTAGCTTTATAGGGTA+AGG 0.447610 6_3:+90619494 None:intergenic
CATCTTTCCCTATCTTCTCT+AGG 0.450984 6_3:+90618337 None:intergenic
ACCACAAAATGATGGCTAAA+GGG 0.453700 6_3:-90618305 Msa0964230:CDS
ACCACAACACCAAATGCAAA+TGG 0.454821 6_3:-90616523 Msa0964230:CDS
ATGGGAGTAATCAAAGTGTT+AGG 0.455811 6_3:-90619247 Msa0964230:CDS
ACCAAGCAATAATGCACAAA+TGG 0.456153 6_3:-90616578 Msa0964230:CDS
GGGAAGAGACCATTACTATC+TGG 0.456852 6_3:-90619383 Msa0964230:CDS
ACATGGGGAGCAAGATCTAT+AGG 0.460309 6_3:-90617634 Msa0964230:CDS
TTAATTAAAGCTAATATCAA+TGG 0.468078 6_3:-90617566 Msa0964230:CDS
TTTGTTGAATGAGAGTTGTA+AGG 0.470397 6_3:+90620875 None:intergenic
CATGAGTTGGAGGAAATTGA+TGG 0.472593 6_3:-90617323 Msa0964230:CDS
TCCATTTGCATTTGGTGTTG+TGG 0.474676 6_3:+90616522 None:intergenic
GCATATTGGATTCAGAAGAA+TGG 0.478493 6_3:+90617592 None:intergenic
CACCACAAAATGATGGCTAA+AGG 0.480596 6_3:-90618306 Msa0964230:CDS
CAATTCCACCTCTCATAGTA+AGG 0.486241 6_3:+90619351 None:intergenic
TTGGCTCAAGTACTCTCTGC+TGG 0.488877 6_3:+90617532 None:intergenic
CACTAAATGGCATGAGTTGG+AGG 0.489488 6_3:-90617333 Msa0964230:CDS
GTGAACTCTATGTCCCCTAT+TGG 0.493891 6_3:+90619326 None:intergenic
CACAAATGGCTAGCAGTGAG+TGG 0.507674 6_3:-90616564 Msa0964230:CDS
CACCTTCAGGTTCAGGCCCT+AGG 0.507892 6_3:-90616456 Msa0964230:CDS
CACACATCATCGCCAAGCAT+TGG 0.517632 6_3:+90618363 None:intergenic
AAACATCATCCACCAATGCT+TGG 0.524035 6_3:-90618375 Msa0964230:CDS
AACATTGCTTTGTTAACCCA+AGG 0.527734 6_3:-90617287 Msa0964230:intron
CTCAGCCACCGATTGAAGAC+CGG 0.529461 6_3:-90616284 Msa0964230:three_prime_UTR
TTGCAGTTAAGGTGAGTCAT+GGG 0.530954 6_3:-90619265 Msa0964230:CDS
TGGTTAGGTGAGTGAAGAGG+TGG 0.534317 6_3:-90620982 Msa0964230:intron
GGTGCTTGGATTCTTAATGA+AGG 0.535525 6_3:+90620915 None:intergenic
ATTCTAGCTGGATAAAGTGC+AGG 0.537572 6_3:-90619298 Msa0964230:CDS
ACCTTCAGGTTCAGGCCCTA+GGG 0.544812 6_3:-90616455 Msa0964230:CDS
GTTGCAGTTAAGGTGAGTCA+TGG 0.545016 6_3:-90619266 Msa0964230:CDS
ATGAGTTGGAGGAAATTGAT+GGG 0.546736 6_3:-90617322 Msa0964230:CDS
TTGAATGAGAGTTGTAAGGT+TGG 0.548181 6_3:+90620879 None:intergenic
GTGAACCCATTAATGTCCCT+AGG 0.550210 6_3:+90616439 None:intergenic
TTCACAGGCTCACAATCAGA+TGG 0.552859 6_3:-90616487 Msa0964230:CDS
AGTTCACAGATAATTCTAGC+TGG 0.556731 6_3:-90619310 Msa0964230:CDS
ACATCATCGCCAAGCATTGG+TGG 0.557359 6_3:+90618366 None:intergenic
TTCAGAAGAATGGTAAATTG+AGG 0.561852 6_3:+90617602 None:intergenic
TCCATCCGGTCTTCAATCGG+TGG 0.564111 6_3:+90616279 None:intergenic
TGTGAGCCTGTGAAGCCAAA+AGG 0.567683 6_3:+90616496 None:intergenic
CTAGAGAAGATAGGGAAAGA+TGG 0.572158 6_3:-90618336 Msa0964230:CDS
CAAAGTGTTAGGATTCAAGA+AGG 0.583699 6_3:-90619236 Msa0964230:CDS
TCACAGGCTCACAATCAGAT+GGG 0.585164 6_3:-90616486 Msa0964230:CDS
TGAACCCATTAATGTCCCTA+GGG 0.585537 6_3:+90616440 None:intergenic
AGTGCATACGAAGCAAAAGA+AGG 0.588320 6_3:+90622001 None:intergenic
TGTGGCGCCTAGAGAAGATA+GGG 0.589096 6_3:-90618344 Msa0964230:CDS
AGCTTTCCACCACAAAATGA+TGG 0.589747 6_3:-90618313 Msa0964230:CDS
AGGTGGAATTGCACCAATAG+GGG 0.589819 6_3:-90619339 Msa0964230:CDS
TTCAATTCTCCAGATAGTAA+TGG 0.589851 6_3:+90619374 None:intergenic
CAATGCTTGGCGATGATGTG+TGG 0.590954 6_3:-90618362 Msa0964230:CDS
GACTTTGACACACTATTTAG+GGG 0.592829 6_3:+90616092 None:intergenic
ATACACTAAATGGCATGAGT+TGG 0.593858 6_3:-90617336 Msa0964230:CDS
TGAGTTGGAGGAAATTGATG+GGG 0.594581 6_3:-90617321 Msa0964230:CDS
ATTCAATAAATACATAGTGA+AGG 0.602832 6_3:-90619414 Msa0964230:CDS
CATACCTGTGAAAATTGGGA+GGG 0.602874 6_3:+90620845 None:intergenic
TCATACCTGTGAAAATTGGG+AGG 0.603052 6_3:+90620844 None:intergenic
GAATTGAACCTTACTATGAG+AGG 0.607156 6_3:-90619359 Msa0964230:CDS
GAATGGTAAATTGAGGTCCA+CGG 0.610553 6_3:+90617609 None:intergenic
GAGCTATATAGACAAATTGG+TGG 0.612340 6_3:-90617366 Msa0964230:CDS
TTACATGAAGCAGTTACAGC+AGG 0.612640 6_3:+90616378 None:intergenic
TTGAACCTTACTATGAGAGG+TGG 0.618381 6_3:-90619356 Msa0964230:CDS
TCCCTAGGGCCTGAACCTGA+AGG 0.620292 6_3:+90616454 None:intergenic
AGCTATATAGACAAATTGGT+GGG 0.623492 6_3:-90617365 Msa0964230:CDS
GCATGCAATGACTTGTGACA+TGG 0.626229 6_3:-90617651 Msa0964230:CDS
AGTAGAATACTCGACGCTGA+AGG 0.629771 6_3:-90619581 Msa0964230:CDS
ATTTGGTTAGGTGAGTGAAG+AGG 0.632675 6_3:-90620985 Msa0964230:intron
ACATAGTGAAGGAAAGAACT+GGG 0.634050 6_3:-90619403 Msa0964230:CDS
ACAAATGGCTAGCAGTGAGT+GGG 0.635035 6_3:-90616563 Msa0964230:CDS
ATTAAGAATCCAAGCACCAA+GGG 0.638386 6_3:-90620910 Msa0964230:CDS
CAGTTAATGTGCAAAACATG+CGG 0.638840 6_3:-90621822 Msa0964230:CDS
GCCACCGATTGAAGACCGGA+TGG 0.641777 6_3:-90616280 Msa0964230:three_prime_UTR
CATTAAGAATCCAAGCACCA+AGG 0.647255 6_3:-90620911 Msa0964230:CDS
GGGACATTAATGGGTTCACA+AGG 0.658302 6_3:-90616435 Msa0964230:CDS
AGCAAGATCTATAGGTACCG+TGG 0.658732 6_3:-90617626 Msa0964230:CDS
GGTGACCTATTGATGGAAGG+TGG 0.664907 6_3:+90620936 None:intergenic
TGATACTCCAAAGCTAAGAG+AGG 0.665341 6_3:-90618244 Msa0964230:intron
CATGCAATGACTTGTGACAT+GGG 0.667953 6_3:-90617650 Msa0964230:CDS
CACAGGCTCACAATCAGATG+GGG 0.673448 6_3:-90616485 Msa0964230:CDS
GAAGGTGACCTATTGATGGA+AGG 0.674542 6_3:+90620933 None:intergenic
TGGGGATGTCTGATAGAATG+TGG 0.679640 6_3:-90617688 Msa0964230:CDS
TTTGTTGTTAAGGATCATCG+TGG 0.682651 6_3:-90619200 Msa0964230:CDS
GATTCAAGAAGGCATGACTG+AGG 0.696401 6_3:-90619225 Msa0964230:CDS
AATTATAGGTGATCAAACTG+TGG 0.703154 6_3:-90616698 Msa0964230:intron
ATGCAATGACTTGTGACATG+GGG 0.729736 6_3:-90617649 Msa0964230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATTATCTTAAAATTTA+AGG - chr6_3:90616763-90616782 Msa0964230:intron 10.0%
!!! TTTTTTATTAAAAATGGTAA+AGG + chr6_3:90616855-90616874 None:intergenic 10.0%
!! TCTATTTAAGAAAAAAAAAT+TGG + chr6_3:90617612-90617631 None:intergenic 10.0%
!! TACAAATTATAATACAATTA+AGG + chr6_3:90618083-90618102 None:intergenic 10.0%
!! ATAAACTTAAATTACTAAAA+AGG + chr6_3:90618133-90618152 None:intergenic 10.0%
!! CATCTTATTAATATATTTAA+GGG + chr6_3:90619257-90619276 None:intergenic 10.0%
!!! TTTTGAAATACTTTATAAAA+TGG + chr6_3:90621434-90621453 None:intergenic 10.0%
!! TAAAATGTAATTAACTATTT+GGG + chr6_3:90621475-90621494 None:intergenic 10.0%
!! ATAAAATGTAATTAACTATT+TGG + chr6_3:90621476-90621495 None:intergenic 10.0%
!! AACTTTAGATATATTAAATT+CGG - chr6_3:90621814-90621833 Msa0964230:CDS 10.0%
!!! TAATAACACTTTTGAAAAAA+TGG - chr6_3:90616124-90616143 Msa0964230:intron 15.0%
!! ATACAAATATATTGTTTGTT+GGG + chr6_3:90616631-90616650 None:intergenic 15.0%
!! TATACAAATATATTGTTTGT+TGG + chr6_3:90616632-90616651 None:intergenic 15.0%
!!! TAATATGATTCTCTAAAAAA+TGG - chr6_3:90616792-90616811 Msa0964230:intron 15.0%
!!! TATTTTCTTAAAAATGGTAA+AGG + chr6_3:90616830-90616849 None:intergenic 15.0%
!!! AATTTTAAGGTTGTTTAATA+TGG + chr6_3:90616957-90616976 None:intergenic 15.0%
!! ACTTTATTATATGATTCATT+TGG - chr6_3:90617223-90617242 Msa0964230:intron 15.0%
!!! TTTTTTTTCTTAAATAGAGA+AGG - chr6_3:90617614-90617633 Msa0964230:CDS 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG + chr6_3:90618008-90618027 None:intergenic 15.0%
!! CTTAAAAATTCATATGAAAA+TGG + chr6_3:90617859-90617878 None:intergenic 15.0%
!!! TTCATGATTTTATTTTCTTA+TGG - chr6_3:90617886-90617905 Msa0964230:intron 15.0%
!!! ATCTTTTTTTCATTTCAATT+TGG + chr6_3:90617823-90617842 None:intergenic 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG - chr6_3:90618008-90618027 Msa0964230:intron 15.0%
!! TAGCATGATATATTATTTAT+TGG - chr6_3:90619160-90619179 Msa0964230:intron 15.0%
!! CCATCTTATTAATATATTTA+AGG + chr6_3:90619258-90619277 None:intergenic 15.0%
!! CCTTAAATATATTAATAAGA+TGG - chr6_3:90619255-90619274 Msa0964230:CDS 15.0%
!!! TTTTTTTAACATGTATCATT+AGG + chr6_3:90619406-90619425 None:intergenic 15.0%
!! TTATATTTAGTATTTACACA+AGG - chr6_3:90619609-90619628 Msa0964230:intron 15.0%
!! AGGTATATATCTTTATAATT+AGG - chr6_3:90620001-90620020 Msa0964230:intron 15.0%
!! GGTATATATCTTTATAATTA+GGG - chr6_3:90620002-90620021 Msa0964230:intron 15.0%
!! GTATATATCTTTATAATTAG+GGG - chr6_3:90620003-90620022 Msa0964230:intron 15.0%
!!! TAAGTTTAATTTCAAATTTG+AGG + chr6_3:90620222-90620241 None:intergenic 15.0%
!! TTAATTAAAGCTAATATCAA+TGG - chr6_3:90620659-90620678 Msa0964230:intron 15.0%
!!! TTTTTAATTGAAAATACCTT+GGG + chr6_3:90620957-90620976 None:intergenic 15.0%
!!! ATTTTTAATTGAAAATACCT+TGG + chr6_3:90620958-90620977 None:intergenic 15.0%
!! GTTAATATGAACTTAATTAT+AGG - chr6_3:90621513-90621532 Msa0964230:intron 15.0%
!! TAAAATTTGTAGGAATTTAA+TGG + chr6_3:90622017-90622036 None:intergenic 15.0%
!! TTATAGTAAGCAAATATAAT+AGG - chr6_3:90622034-90622053 Msa0964230:CDS 15.0%
!!! ATACATATTTGAAGTTAATG+TGG - chr6_3:90616549-90616568 Msa0964230:CDS 20.0%
!!! TGTACAAAAATATTGTTGTT+AGG - chr6_3:90616718-90616737 Msa0964230:intron 20.0%
!!! AAGGTCTATTTTCTTAAAAA+TGG + chr6_3:90616836-90616855 None:intergenic 20.0%
!!! CAAGACTCAAATAAATTTTA+AGG + chr6_3:90616970-90616989 None:intergenic 20.0%
!! ATTATATGATTCATTTGGTT+AGG - chr6_3:90617228-90617247 Msa0964230:intron 20.0%
!! TTAAGAAAAAAAAATTGGCT+CGG + chr6_3:90617607-90617626 None:intergenic 20.0%
!! TTATTTACATTTACCTAAGT+AGG + chr6_3:90617720-90617739 None:intergenic 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG + chr6_3:90617790-90617809 None:intergenic 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG + chr6_3:90617791-90617810 None:intergenic 20.0%
!!! CTTTATTTTAGGTAACAATT+TGG - chr6_3:90617794-90617813 Msa0964230:intron 20.0%
!!! ATAGTCTTGTAAATATCAAA+AGG - chr6_3:90618240-90618259 Msa0964230:intron 20.0%
!!! TAGTCTTGTAAATATCAAAA+GGG - chr6_3:90618241-90618260 Msa0964230:intron 20.0%
!!! TATGAAACATGCTTTTAAAT+AGG - chr6_3:90618338-90618357 Msa0964230:CDS 20.0%
!! ATAAATTCGGTAATCAAATT+TGG + chr6_3:90618532-90618551 None:intergenic 20.0%
!! ATTCAATAAATACATAGTGA+AGG - chr6_3:90618811-90618830 Msa0964230:intron 20.0%
!!! CTTTTATTTTCAACTAACTT+TGG - chr6_3:90619210-90619229 Msa0964230:CDS 20.0%
!!! ATAGGGTAAATGATTTTTAT+TGG - chr6_3:90619554-90619573 Msa0964230:CDS 20.0%
!! AAGAAATTGATCTTGTATAA+CGG + chr6_3:90620182-90620201 None:intergenic 20.0%
!!! ATTTATCTGAAATCAGATTT+TGG - chr6_3:90620511-90620530 Msa0964230:intron 20.0%
!!! TTTATCTGAAATCAGATTTT+GGG - chr6_3:90620512-90620531 Msa0964230:intron 20.0%
!!! GCTTTAATTAATTTGCATAT+TGG + chr6_3:90620650-90620669 None:intergenic 20.0%
!! TATATTGTACCTTATTCATT+TGG + chr6_3:90620715-90620734 None:intergenic 20.0%
!! AATTCAAACATTCAAGATAT+TGG + chr6_3:90621286-90621305 None:intergenic 20.0%
!! TATCATCAGAATCAATATTA+TGG - chr6_3:90621591-90621610 Msa0964230:intron 20.0%
!! TTGCTTACTATAAAATTTGT+AGG + chr6_3:90622027-90622046 None:intergenic 20.0%
! TATTATGAACCAAAGAGTTA+AGG + chr6_3:90616109-90616128 None:intergenic 25.0%
!! ACTTCAAATATGTATGCTTT+TGG + chr6_3:90616544-90616563 None:intergenic 25.0%
! GTCATCTCTTAATTCTTATT+AGG + chr6_3:90616609-90616628 None:intergenic 25.0%
!! AATATAGCTTGTGAAAATTG+AGG - chr6_3:90616679-90616698 Msa0964230:CDS 25.0%
!! ATATAGCTTGTGAAAATTGA+GGG - chr6_3:90616680-90616699 Msa0964230:CDS 25.0%
! ATCAAATATTTACAGTCATG+TGG + chr6_3:90616747-90616766 None:intergenic 25.0%
! AATTGGAGATTTCATATTGA+CGG + chr6_3:90617048-90617067 None:intergenic 25.0%
! TTGTAACTCTAACTATCTAA+GGG + chr6_3:90617439-90617458 None:intergenic 25.0%
! TTTGTAACTCTAACTATCTA+AGG + chr6_3:90617440-90617459 None:intergenic 25.0%
!!! TAGTCCCTTAACTTTATTTT+AGG - chr6_3:90617783-90617802 Msa0964230:intron 25.0%
! TCATATGAAAATGGATCAAA+AGG + chr6_3:90617850-90617869 None:intergenic 25.0%
! CTTGAAAATGTATATGAGAA+TGG - chr6_3:90617970-90617989 Msa0964230:intron 25.0%
! TGTTACCTGAAATTAAGTTA+AGG - chr6_3:90618038-90618057 Msa0964230:intron 25.0%
! GTTACCTGAAATTAAGTTAA+GGG - chr6_3:90618039-90618058 Msa0964230:intron 25.0%
! ACATTAATCTATTAGTTCGT+TGG - chr6_3:90618273-90618292 Msa0964230:CDS 25.0%
!!! CTTTCATAGGCTTATTTTTT+AGG + chr6_3:90618404-90618423 None:intergenic 25.0%
! CTAAAAAATAAGCCTATGAA+AGG - chr6_3:90618402-90618421 Msa0964230:intron 25.0%
! TCTATAGTACAACTAAAAGT+GGG + chr6_3:90619283-90619302 None:intergenic 25.0%
! TGTACTATAGACTATGAAAT+AGG - chr6_3:90619292-90619311 Msa0964230:CDS 25.0%
!!! AACATTTGGCTTTGTATAAT+AGG - chr6_3:90619536-90619555 Msa0964230:CDS 25.0%
!!! ACATTTGGCTTTGTATAATA+GGG - chr6_3:90619537-90619556 Msa0964230:CDS 25.0%
!! TCTTTATGCTAATTTTGTTC+AGG - chr6_3:90620065-90620084 Msa0964230:intron 25.0%
! TAACTCGTTTGTTTATTTGA+AGG - chr6_3:90620251-90620270 Msa0964230:intron 25.0%
! TGCTCTTATAATACATGTTA+AGG - chr6_3:90620287-90620306 Msa0964230:intron 25.0%
!! TAGTATTTTACTTTACTTCG+TGG - chr6_3:90620766-90620785 Msa0964230:intron 25.0%
! TGACATTATATGCTAGATAT+TGG - chr6_3:90620790-90620809 Msa0964230:intron 25.0%
!!! GTCCTCTAATTCATTTTAAT+TGG - chr6_3:90620812-90620831 Msa0964230:intron 25.0%
! CACCAATTAAAATGAATTAG+AGG + chr6_3:90620817-90620836 None:intergenic 25.0%
! ATTCAAGATATTGGTCATAT+CGG + chr6_3:90621277-90621296 None:intergenic 25.0%
! AAACAAATTCATGTTTAGAG+TGG - chr6_3:90621333-90621352 Msa0964230:intron 25.0%
!! CTAGCAATATTTTCTATAGA+TGG + chr6_3:90621621-90621640 None:intergenic 25.0%
! AGATATATTAAATTCGGATC+TGG - chr6_3:90621820-90621839 Msa0964230:CDS 25.0%
! GAATTTAATGGAATAGGATT+TGG + chr6_3:90622005-90622024 None:intergenic 25.0%
! TTGTAGGAATTTAATGGAAT+AGG + chr6_3:90622011-90622030 None:intergenic 25.0%
ACATCAAAACCTTAACTCTT+TGG - chr6_3:90616097-90616116 Msa0964230:three_prime_UTR 30.0%
TTGAAAAAATGGCTACCAAA+AGG - chr6_3:90616135-90616154 Msa0964230:intron 30.0%
TGAAAAAATGGCTACCAAAA+GGG - chr6_3:90616136-90616155 Msa0964230:intron 30.0%
! AGAATCATCAAAAACCCTTT+TGG + chr6_3:90616153-90616172 None:intergenic 30.0%
ATGTATAGTAGTTTCTTGCA+TGG + chr6_3:90616303-90616322 None:intergenic 30.0%
!! CTTACCACTCTTTTAAGAAA+AGG + chr6_3:90616450-90616469 None:intergenic 30.0%
AAGGTTGTTTAATATGGATC+CGG + chr6_3:90616951-90616970 None:intergenic 30.0%
TTAATGCAAGCTTCATAGTT+AGG + chr6_3:90617117-90617136 None:intergenic 30.0%
TTTGTTGAATGAGAGTTGTA+AGG + chr6_3:90617353-90617372 None:intergenic 30.0%
TACAACTCTCATTCAACAAA+AGG - chr6_3:90617353-90617372 Msa0964230:CDS 30.0%
GTTTCATACCTGTGAAAATT+GGG + chr6_3:90617387-90617406 None:intergenic 30.0%
AGTTTCATACCTGTGAAAAT+TGG + chr6_3:90617388-90617407 None:intergenic 30.0%
! CTTTTCTATCTCTAAACTTC+CGG + chr6_3:90617489-90617508 None:intergenic 30.0%
TAATTTAGTCGCTAACTGTT+AGG - chr6_3:90617523-90617542 Msa0964230:CDS 30.0%
AATTTAGTCGCTAACTGTTA+GGG - chr6_3:90617524-90617543 Msa0964230:CDS 30.0%
CGAAGCCTATTTAACTAAAA+AGG - chr6_3:90617648-90617667 Msa0964230:CDS 30.0%
!!! CCTTGCCTTTTTAGTTAAAT+AGG + chr6_3:90617656-90617675 None:intergenic 30.0%
CCTATTTAACTAAAAAGGCA+AGG - chr6_3:90617653-90617672 Msa0964230:CDS 30.0%
AAAAACCTCTTAATCCTATC+AGG - chr6_3:90617690-90617709 Msa0964230:CDS 30.0%
TTACATTTACCTAAGTAGGT+TGG + chr6_3:90617716-90617735 None:intergenic 30.0%
TTCTTATGCAAACATAGACA+AGG + chr6_3:90617936-90617955 None:intergenic 30.0%
GTATATGAGAATGGACAAAA+AGG - chr6_3:90617979-90617998 Msa0964230:intron 30.0%
! CTTAATTTCAGGTAACAGTT+TGG + chr6_3:90618035-90618054 None:intergenic 30.0%
TAGTCCCTTAACTTAATTTC+AGG + chr6_3:90618046-90618065 None:intergenic 30.0%
! TAAGCCTTAAATCTTTTGAC+AGG - chr6_3:90618439-90618458 Msa0964230:intron 30.0%
! AACGACGAAGAGTATAAATT+CGG + chr6_3:90618545-90618564 None:intergenic 30.0%
!! CAACAATCTCTAGCTTTATA+GGG + chr6_3:90618739-90618758 None:intergenic 30.0%
!! ACAACAATCTCTAGCTTTAT+AGG + chr6_3:90618740-90618759 None:intergenic 30.0%
TTCAATTCTCCAGATAGTAA+TGG + chr6_3:90618854-90618873 None:intergenic 30.0%
CTATAGTACAACTAAAAGTG+GGG + chr6_3:90619282-90619301 None:intergenic 30.0%
GTCTATAGTACAACTAAAAG+TGG + chr6_3:90619284-90619303 None:intergenic 30.0%
! CATTTTATAGCAGCTAGTTA+AGG - chr6_3:90619352-90619371 Msa0964230:CDS 30.0%
! GCTCTTAAAAGCACATATTA+AGG + chr6_3:90619509-90619528 None:intergenic 30.0%
! TAAGAGCACACATTAACATT+TGG - chr6_3:90619522-90619541 Msa0964230:CDS 30.0%
TAATCTATGATTCCATTGAG+AGG + chr6_3:90619730-90619749 None:intergenic 30.0%
!! ACTAGTTTCTTTTTGCAGAA+AGG - chr6_3:90619757-90619776 Msa0964230:intron 30.0%
ATATATACCTCTCTTAGCTT+TGG + chr6_3:90619991-90620010 None:intergenic 30.0%
TTAGCATAAAGATAGACTCT+AGG + chr6_3:90620057-90620076 None:intergenic 30.0%
ATGCTAATTGCACAAGTTAA+AGG + chr6_3:90620419-90620438 None:intergenic 30.0%
TTCAGAAGAATGGTAAATTG+AGG + chr6_3:90620626-90620645 None:intergenic 30.0%
GTGCCATACCATTTATAAAT+TGG - chr6_3:90620834-90620853 Msa0964230:intron 30.0%
CTGCCAATTTATAAATGGTA+TGG + chr6_3:90620840-90620859 None:intergenic 30.0%
! TAGCTCTGCCAATTTATAAA+TGG + chr6_3:90620845-90620864 None:intergenic 30.0%
AGCTATATAGACAAATTGGT+GGG - chr6_3:90620860-90620879 Msa0964230:CDS 30.0%
!! GATGACTTAGTTTTTGAACT+CGG - chr6_3:90621178-90621197 Msa0964230:intron 30.0%
!!! CATGAATTTGTTTTTTGCAC+AGG + chr6_3:90621326-90621345 None:intergenic 30.0%
AATTATAGGTGATCAAACTG+TGG - chr6_3:90621527-90621546 Msa0964230:intron 30.0%
AAAGGAAATCCATTTGCATT+TGG + chr6_3:90621714-90621733 None:intergenic 30.0%
!! AATGCAAATGGATTTCCTTT+TGG - chr6_3:90621714-90621733 Msa0964230:intron 30.0%
TTCGACAACTCAGATTTATT+TGG - chr6_3:90621897-90621916 Msa0964230:intron 30.0%
AGATCTAACTGTGTGAAAAA+TGG + chr6_3:90621923-90621942 None:intergenic 30.0%
! TGTAATAGATTTTGTCCATC+CGG + chr6_3:90621963-90621982 None:intergenic 30.0%
TATATACATTTCCTTGCAAG+TGG - chr6_3:90622106-90622125 Msa0964230:five_prime_UTR 30.0%
TGACTTTGACACACTATTTA+GGG + chr6_3:90622137-90622156 None:intergenic 30.0%
TTGACTTTGACACACTATTT+AGG + chr6_3:90622138-90622157 None:intergenic 30.0%
ATAGTGTGTCAAAGTCAAAA+TGG - chr6_3:90622140-90622159 Msa0964230:five_prime_UTR 30.0%
GATTTCATTCGTTTGTCGTT+TGG + chr6_3:90616197-90616216 None:intergenic 35.0%
CAGTTAATGTGCAAAACATG+CGG - chr6_3:90616403-90616422 Msa0964230:three_prime_UTR 35.0%
! CAAAACATGCGGAACTTTTT+AGG - chr6_3:90616414-90616433 Msa0964230:exon 35.0%
! GGAACCTTTTCTTAAAAGAG+TGG - chr6_3:90616443-90616462 Msa0964230:CDS 35.0%
!! TGTGGTTAACTTGTTTCTCA+TGG - chr6_3:90616567-90616586 Msa0964230:CDS 35.0%
!! GTGGTTAACTTGTTTCTCAT+GGG - chr6_3:90616568-90616587 Msa0964230:CDS 35.0%
!! TAACTTGTTTCTCATGGGTT+AGG - chr6_3:90616573-90616592 Msa0964230:CDS 35.0%
! AACTTGTTTCTCATGGGTTA+GGG - chr6_3:90616574-90616593 Msa0964230:CDS 35.0%
AAGATGGTCCAATGTTAAAC+CGG - chr6_3:90616929-90616948 Msa0964230:intron 35.0%
ATATGGATCCGGTTTAACAT+TGG + chr6_3:90616940-90616959 None:intergenic 35.0%
TTGTGGTATGAATAGCTATG+CGG + chr6_3:90617081-90617100 None:intergenic 35.0%
!!! TAGGTGAAGTTGGTTTTTTG+TGG + chr6_3:90617098-90617117 None:intergenic 35.0%
TAATGAAGGTGACCTATTGA+TGG + chr6_3:90617299-90617318 None:intergenic 35.0%
ATTAAGAATCCAAGCACCAA+GGG - chr6_3:90617315-90617334 Msa0964230:CDS 35.0%
TTGAATGAGAGTTGTAAGGT+TGG + chr6_3:90617349-90617368 None:intergenic 35.0%
AACTCTAACTATCTAAGGGT+TGG + chr6_3:90617435-90617454 None:intergenic 35.0%
GTTGAAACTTGAAATAGTGC+CGG - chr6_3:90617467-90617486 Msa0964230:intron 35.0%
CGGAAGTTTAGAGATAGAAA+AGG - chr6_3:90617487-90617506 Msa0964230:intron 35.0%
GTTAGCGACTAAATTAGAGA+TGG + chr6_3:90617519-90617538 None:intergenic 35.0%
! ATGCTTTTAAATAGGCTAGC+AGG - chr6_3:90618346-90618365 Msa0964230:CDS 35.0%
CTGTCCTGTCAAAAGATTTA+AGG + chr6_3:90618446-90618465 None:intergenic 35.0%
TTGGAAAGAAGTTATCTCAG+TGG + chr6_3:90618613-90618632 None:intergenic 35.0%
AACTTCTTTCCAACTTTCAC+AGG - chr6_3:90618620-90618639 Msa0964230:intron 35.0%
ATTCTACTACCTGTGAAAGT+TGG + chr6_3:90618632-90618651 None:intergenic 35.0%
TCAACAAGACTTATGCAGAT+AGG + chr6_3:90618674-90618693 None:intergenic 35.0%
!! GAAGACTTGTTGGAACAATT+TGG + chr6_3:90618712-90618731 None:intergenic 35.0%
!! ATCTCTAGCTTTATAGGGTA+AGG + chr6_3:90618734-90618753 None:intergenic 35.0%
CTAGAGATTGTTGTACTTGA+TGG - chr6_3:90618746-90618765 Msa0964230:intron 35.0%
! CAATTCTCGTTTTCATCATG+TGG + chr6_3:90618779-90618798 None:intergenic 35.0%
CACATGATGAAAACGAGAAT+TGG - chr6_3:90618777-90618796 Msa0964230:intron 35.0%
TACATAGTGAAGGAAAGAAC+TGG - chr6_3:90618821-90618840 Msa0964230:intron 35.0%
ACATAGTGAAGGAAAGAACT+GGG - chr6_3:90618822-90618841 Msa0964230:intron 35.0%
GAATTGAACCTTACTATGAG+AGG - chr6_3:90618866-90618885 Msa0964230:intron 35.0%
AGTTCACAGATAATTCTAGC+TGG - chr6_3:90618915-90618934 Msa0964230:intron 35.0%
! GAAGTTTAGAGTTGCAGTTA+AGG - chr6_3:90618949-90618968 Msa0964230:intron 35.0%
! ATGGGAGTAATCAAAGTGTT+AGG - chr6_3:90618978-90618997 Msa0964230:intron 35.0%
! CAAAGTGTTAGGATTCAAGA+AGG - chr6_3:90618989-90619008 Msa0964230:intron 35.0%
!! TTTGTTGTTAAGGATCATCG+TGG - chr6_3:90619025-90619044 Msa0964230:intron 35.0%
! TTGTTGCGACACATTTTTGT+AGG + chr6_3:90619646-90619665 None:intergenic 35.0%
! TAAGCATTTTTGCCTCTCAA+TGG - chr6_3:90619715-90619734 Msa0964230:intron 35.0%
ACCACAAAATGATGGCTAAA+GGG - chr6_3:90619920-90619939 Msa0964230:intron 35.0%
! AAGATAGACTCTAGGAAATG+TGG + chr6_3:90620049-90620068 None:intergenic 35.0%
! TGAAATCAGATTTTGGGCAT+GGG - chr6_3:90620518-90620537 Msa0964230:intron 35.0%
GCATATTGGATTCAGAAGAA+TGG + chr6_3:90620636-90620655 None:intergenic 35.0%
GTACTTGAGCCAAATGAATA+AGG - chr6_3:90620703-90620722 Msa0964230:intron 35.0%
GCAGAGCTATATAGACAAAT+TGG - chr6_3:90620856-90620875 Msa0964230:CDS 35.0%
GAGCTATATAGACAAATTGG+TGG - chr6_3:90620859-90620878 Msa0964230:CDS 35.0%
ATACACTAAATGGCATGAGT+TGG - chr6_3:90620889-90620908 Msa0964230:CDS 35.0%
! ATGAGTTGGAGGAAATTGAT+GGG - chr6_3:90620903-90620922 Msa0964230:CDS 35.0%
! AACATTGCTTTGTTAACCCA+AGG - chr6_3:90620938-90620957 Msa0964230:CDS 35.0%
ATGTCAACTACGTGAATACA+TGG + chr6_3:90621133-90621152 None:intergenic 35.0%
! GATATTGGTCATATCGGTTA+AGG + chr6_3:90621271-90621290 None:intergenic 35.0%
!! TTTTTGCACAGGTTGAATTG+CGG + chr6_3:90621315-90621334 None:intergenic 35.0%
ACCAAGCAATAATGCACAAA+TGG - chr6_3:90621647-90621666 Msa0964230:intron 35.0%
GACTTTGACACACTATTTAG+GGG + chr6_3:90622136-90622155 None:intergenic 35.0%
AGTGCATACGAAGCAAAAGA+AGG + chr6_3:90616227-90616246 None:intergenic 40.0%
GCTTCATAGTTAGGTGAAGT+TGG + chr6_3:90617108-90617127 None:intergenic 40.0%
ATTTGGTTAGGTGAGTGAAG+AGG - chr6_3:90617240-90617259 Msa0964230:intron 40.0%
GGTGCTTGGATTCTTAATGA+AGG + chr6_3:90617313-90617332 None:intergenic 40.0%
CATTAAGAATCCAAGCACCA+AGG - chr6_3:90617314-90617333 Msa0964230:CDS 40.0%
CATACCTGTGAAAATTGGGA+GGG + chr6_3:90617383-90617402 None:intergenic 40.0%
TCATACCTGTGAAAATTGGG+AGG + chr6_3:90617384-90617403 None:intergenic 40.0%
TATGTCTCTATAGACCGATC+TGG + chr6_3:90617561-90617580 None:intergenic 40.0%
CATCAGACTTTCAAGAGATC+AGG - chr6_3:90618372-90618391 Msa0964230:CDS 40.0%
! TAAGGCTTAAGCATTGTCAG+CGG + chr6_3:90618428-90618447 None:intergenic 40.0%
! TCTTTTGACAGGACAGACTT+AGG - chr6_3:90618450-90618469 Msa0964230:intron 40.0%
AGTAAGGGTGGGAATAGATT+AGG + chr6_3:90618496-90618515 None:intergenic 40.0%
ACTCTACGATTAGTAAGGGT+GGG + chr6_3:90618507-90618526 None:intergenic 40.0%
AACTCTACGATTAGTAAGGG+TGG + chr6_3:90618508-90618527 None:intergenic 40.0%
GGCAACTCTACGATTAGTAA+GGG + chr6_3:90618511-90618530 None:intergenic 40.0%
TGGCAACTCTACGATTAGTA+AGG + chr6_3:90618512-90618531 None:intergenic 40.0%
ATAGGGTAAGGAAGACTTGT+TGG + chr6_3:90618722-90618741 None:intergenic 40.0%
TTGAACCTTACTATGAGAGG+TGG - chr6_3:90618869-90618888 Msa0964230:intron 40.0%
CAATTCCACCTCTCATAGTA+AGG + chr6_3:90618877-90618896 None:intergenic 40.0%
! ATTCTAGCTGGATAAAGTGC+AGG - chr6_3:90618927-90618946 Msa0964230:intron 40.0%
TTGCAGTTAAGGTGAGTCAT+GGG - chr6_3:90618960-90618979 Msa0964230:intron 40.0%
!! GACTGAGGCATTTGTTGTTA+AGG - chr6_3:90619015-90619034 Msa0964230:intron 40.0%
AAACATCATCCACCAATGCT+TGG - chr6_3:90619850-90619869 Msa0964230:intron 40.0%
CATCTTTCCCTATCTTCTCT+AGG + chr6_3:90619891-90619910 None:intergenic 40.0%
CTAGAGAAGATAGGGAAAGA+TGG - chr6_3:90619889-90619908 Msa0964230:intron 40.0%
AGCTTTCCACCACAAAATGA+TGG - chr6_3:90619912-90619931 Msa0964230:intron 40.0%
! CTTTAGCCATCATTTTGTGG+TGG + chr6_3:90619921-90619940 None:intergenic 40.0%
CACCACAAAATGATGGCTAA+AGG - chr6_3:90619919-90619938 Msa0964230:intron 40.0%
! TCCCTTTAGCCATCATTTTG+TGG + chr6_3:90619924-90619943 None:intergenic 40.0%
TGATACTCCAAAGCTAAGAG+AGG - chr6_3:90619981-90620000 Msa0964230:intron 40.0%
! CTGAAATCAGATTTTGGGCA+TGG - chr6_3:90620517-90620536 Msa0964230:intron 40.0%
! GAAATCAGATTTTGGGCATG+GGG - chr6_3:90620519-90620538 Msa0964230:intron 40.0%
! CATGCAATGACTTGTGACAT+GGG - chr6_3:90620575-90620594 Msa0964230:intron 40.0%
! ATGCAATGACTTGTGACATG+GGG - chr6_3:90620576-90620595 Msa0964230:intron 40.0%
GAATGGTAAATTGAGGTCCA+CGG + chr6_3:90620619-90620638 None:intergenic 40.0%
TGTGAGTCTTGAGTAGTAGA+TGG + chr6_3:90620742-90620761 None:intergenic 40.0%
! TGGGAGAAGCATACACTAAA+TGG - chr6_3:90620879-90620898 Msa0964230:CDS 40.0%
! CATGAGTTGGAGGAAATTGA+TGG - chr6_3:90620902-90620921 Msa0964230:CDS 40.0%
! TGAGTTGGAGGAAATTGATG+GGG - chr6_3:90620904-90620923 Msa0964230:CDS 40.0%
ACTGTTGCTGGATGATTGTT+TGG + chr6_3:90621561-90621580 None:intergenic 40.0%
TATGTTGTTGCTACTGTTGC+TGG + chr6_3:90621573-90621592 None:intergenic 40.0%
GCCATTTGTGCATTATTGCT+TGG + chr6_3:90621651-90621670 None:intergenic 40.0%
!! TGCATTTGGTGTTGTGGTAT+AGG + chr6_3:90621700-90621719 None:intergenic 40.0%
ACCACAACACCAAATGCAAA+TGG - chr6_3:90621702-90621721 Msa0964230:intron 40.0%
!! TCCATTTGCATTTGGTGTTG+TGG + chr6_3:90621706-90621725 None:intergenic 40.0%
TGAACCCATTAATGTCCCTA+GGG + chr6_3:90621788-90621807 None:intergenic 40.0%
TTACATGAAGCAGTTACAGC+AGG + chr6_3:90621850-90621869 None:intergenic 40.0%
!! GCGGAACTTTTTAGGAGCTT+TGG - chr6_3:90616422-90616441 Msa0964230:exon 45.0%
CGCATCTGTGTCAAATGTCA+TGG + chr6_3:90616488-90616507 None:intergenic 45.0%
!! TGTTTCTCATGGGTTAGGGT+TGG - chr6_3:90616578-90616597 Msa0964230:CDS 45.0%
!! GTTTCTCATGGGTTAGGGTT+GGG - chr6_3:90616579-90616598 Msa0964230:CDS 45.0%
!! TTTCTCATGGGTTAGGGTTG+GGG - chr6_3:90616580-90616599 Msa0964230:CDS 45.0%
TATGCGGAGACTACTGCAAT+TGG + chr6_3:90617065-90617084 None:intergenic 45.0%
GAAGAGGTGGATAGAGCAAT+TGG - chr6_3:90617256-90617275 Msa0964230:intron 45.0%
GCTTTCCACCTTCCATCAAT+AGG - chr6_3:90617284-90617303 Msa0964230:intron 45.0%
GAAGGTGACCTATTGATGGA+AGG + chr6_3:90617295-90617314 None:intergenic 45.0%
! AAGGTTGGTTGTTGATCCCT+TGG + chr6_3:90617334-90617353 None:intergenic 45.0%
! CTTTCCCTCCCAATTTTCAC+AGG - chr6_3:90617376-90617395 Msa0964230:intron 45.0%
TAGTCGCTAACTGTTAGGGA+TGG - chr6_3:90617528-90617547 Msa0964230:CDS 45.0%
AGTCGCTAACTGTTAGGGAT+GGG - chr6_3:90617529-90617548 Msa0964230:CDS 45.0%
! GTTGGCCTGATAGGATTAAG+AGG + chr6_3:90617698-90617717 None:intergenic 45.0%
AGGTCGAGTTAGACTTTGCA+AGG + chr6_3:90618476-90618495 None:intergenic 45.0%
AGTAGAATACTCGACGCTGA+AGG - chr6_3:90618644-90618663 Msa0964230:intron 45.0%
GGGAAGAGACCATTACTATC+TGG - chr6_3:90618842-90618861 Msa0964230:intron 45.0%
AGAGGTGGAATTGCACCAAT+AGG - chr6_3:90618884-90618903 Msa0964230:intron 45.0%
GAGGTGGAATTGCACCAATA+GGG - chr6_3:90618885-90618904 Msa0964230:intron 45.0%
AGGTGGAATTGCACCAATAG+GGG - chr6_3:90618886-90618905 Msa0964230:intron 45.0%
GTGAACTCTATGTCCCCTAT+TGG + chr6_3:90618902-90618921 None:intergenic 45.0%
GTTGCAGTTAAGGTGAGTCA+TGG - chr6_3:90618959-90618978 Msa0964230:intron 45.0%
! GATTCAAGAAGGCATGACTG+AGG - chr6_3:90619000-90619019 Msa0964230:intron 45.0%
TGGGGATGTCTGATAGAATG+TGG - chr6_3:90620537-90620556 Msa0964230:intron 45.0%
! GCATGCAATGACTTGTGACA+TGG - chr6_3:90620574-90620593 Msa0964230:intron 45.0%
ACATGGGGAGCAAGATCTAT+AGG - chr6_3:90620591-90620610 Msa0964230:intron 45.0%
! AGCAAGATCTATAGGTACCG+TGG - chr6_3:90620599-90620618 Msa0964230:intron 45.0%
! CACTAAATGGCATGAGTTGG+AGG - chr6_3:90620892-90620911 Msa0964230:CDS 45.0%
CCACTACAACATGTCTTGTG+TGG + chr6_3:90621102-90621121 None:intergenic 45.0%
CCACACAAGACATGTTGTAG+TGG - chr6_3:90621099-90621118 Msa0964230:intron 45.0%
ACAAATGGCTAGCAGTGAGT+GGG - chr6_3:90621662-90621681 Msa0964230:intron 45.0%
!!! GGATTTCCTTTTGGCTTCAC+AGG - chr6_3:90621723-90621742 Msa0964230:intron 45.0%
TTCACAGGCTCACAATCAGA+TGG - chr6_3:90621738-90621757 Msa0964230:intron 45.0%
TCACAGGCTCACAATCAGAT+GGG - chr6_3:90621739-90621758 Msa0964230:intron 45.0%
GTGAACCCATTAATGTCCCT+AGG + chr6_3:90621789-90621808 None:intergenic 45.0%
!! GGGACATTAATGGGTTCACA+AGG - chr6_3:90621790-90621809 Msa0964230:CDS 45.0%
TTGTCCATCCGGTCTTCAAT+CGG + chr6_3:90621952-90621971 None:intergenic 45.0%
!!! ATTCATTTTTTTATTAAAAA+TGG + chr6_3:90616861-90616880 None:intergenic 5.0%
!!! ATATTTTATTAAAAATAAGA+TGG - chr6_3:90616913-90616932 Msa0964230:intron 5.0%
!! AATCTAATATATTTAATTAA+AGG + chr6_3:90620445-90620464 None:intergenic 5.0%
TGGTTAGGTGAGTGAAGAGG+TGG - chr6_3:90617243-90617262 Msa0964230:intron 50.0%
GGTGACCTATTGATGGAAGG+TGG + chr6_3:90617292-90617311 None:intergenic 50.0%
!! GTTGTTGATCCCTTGGTGCT+TGG + chr6_3:90617327-90617346 None:intergenic 50.0%
GGGATGGGAATAAGCCAGAT+CGG - chr6_3:90617544-90617563 Msa0964230:CDS 50.0%
!! CCTAAGTAGGTTGGCCTGAT+AGG + chr6_3:90617707-90617726 None:intergenic 50.0%
CCTATCAGGCCAACCTACTT+AGG - chr6_3:90617704-90617723 Msa0964230:intron 50.0%
CATTGTCAGCGGCCTTTCAT+AGG + chr6_3:90618417-90618436 None:intergenic 50.0%
!! ACATCATCGCCAAGCATTGG+TGG + chr6_3:90619862-90619881 None:intergenic 50.0%
CACACATCATCGCCAAGCAT+TGG + chr6_3:90619865-90619884 None:intergenic 50.0%
CAATGCTTGGCGATGATGTG+TGG - chr6_3:90619863-90619882 Msa0964230:intron 50.0%
TGTGGCGCCTAGAGAAGATA+GGG - chr6_3:90619881-90619900 Msa0964230:intron 50.0%
TTGGCTCAAGTACTCTCTGC+TGG + chr6_3:90620696-90620715 None:intergenic 50.0%
! TGCACAGGTTGAATTGCGGT+CGG + chr6_3:90621311-90621330 None:intergenic 50.0%
CACAAATGGCTAGCAGTGAG+TGG - chr6_3:90621661-90621680 Msa0964230:intron 50.0%
TGTGAGCCTGTGAAGCCAAA+AGG + chr6_3:90621732-90621751 None:intergenic 50.0%
CACAGGCTCACAATCAGATG+GGG - chr6_3:90621740-90621759 Msa0964230:intron 50.0%
! GACATGACACCTTCAGGTTC+AGG - chr6_3:90621762-90621781 Msa0964230:intron 50.0%
TCAGGCCCTAGGGACATTAA+TGG - chr6_3:90621780-90621799 Msa0964230:intron 50.0%
CAGGCCCTAGGGACATTAAT+GGG - chr6_3:90621781-90621800 Msa0964230:intron 50.0%
! TTAGGGGTACACCACTTGCA+AGG + chr6_3:90622120-90622139 None:intergenic 50.0%
!! TGGCTCGGTCTGTCTGTCAT+AGG + chr6_3:90617592-90617611 None:intergenic 55.0%
GTGTGGCGCCTAGAGAAGAT+AGG - chr6_3:90619880-90619899 Msa0964230:intron 55.0%
GATGGGGACATGACACCTTC+AGG - chr6_3:90621756-90621775 Msa0964230:intron 55.0%
! ACCTTCAGGTTCAGGCCCTA+GGG - chr6_3:90621770-90621789 Msa0964230:intron 55.0%
! CTCAGCCACCGATTGAAGAC+CGG - chr6_3:90621941-90621960 Msa0964230:intron 55.0%
TCCATCCGGTCTTCAATCGG+TGG + chr6_3:90621949-90621968 None:intergenic 55.0%
!! CTCATGGGTTAGGGTTGGGG+TGG - chr6_3:90616583-90616602 Msa0964230:CDS 60.0%
! CACCTTCAGGTTCAGGCCCT+AGG - chr6_3:90621769-90621788 Msa0964230:intron 60.0%
TCCCTAGGGCCTGAACCTGA+AGG + chr6_3:90621774-90621793 None:intergenic 60.0%
! GCCACCGATTGAAGACCGGA+TGG - chr6_3:90621945-90621964 Msa0964230:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 90616071 90622176 90616071 ID=Msa0964230;Name=Msa0964230
chr6_3 mRNA 90616071 90622176 90616071 ID=Msa0964230-mRNA-1;Parent=Msa0964230;Name=Msa0964230-mRNA-1;_AED=0.16;_eAED=0.16;_QI=72|1|1|1|0.87|0.77|9|301|491
chr6_3 exon 90616071 90616122 90616071 ID=Msa0964230-mRNA-1:exon:16294;Parent=Msa0964230-mRNA-1
chr6_3 exon 90616177 90616712 90616177 ID=Msa0964230-mRNA-1:exon:16293;Parent=Msa0964230-mRNA-1
chr6_3 exon 90617288 90617387 90617288 ID=Msa0964230-mRNA-1:exon:16292;Parent=Msa0964230-mRNA-1
chr6_3 exon 90617523 90617720 90617523 ID=Msa0964230-mRNA-1:exon:16291;Parent=Msa0964230-mRNA-1
chr6_3 exon 90618245 90618405 90618245 ID=Msa0964230-mRNA-1:exon:16290;Parent=Msa0964230-mRNA-1
chr6_3 exon 90619195 90619605 90619195 ID=Msa0964230-mRNA-1:exon:16289;Parent=Msa0964230-mRNA-1
chr6_3 exon 90620850 90620997 90620850 ID=Msa0964230-mRNA-1:exon:16288;Parent=Msa0964230-mRNA-1
chr6_3 exon 90621783 90621858 90621783 ID=Msa0964230-mRNA-1:exon:16287;Parent=Msa0964230-mRNA-1
chr6_3 exon 90622010 90622176 90622010 ID=Msa0964230-mRNA-1:exon:16286;Parent=Msa0964230-mRNA-1
chr6_3 five_prime_UTR 90622105 90622176 90622105 ID=Msa0964230-mRNA-1:five_prime_utr;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90622010 90622104 90622010 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90621783 90621858 90621783 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90620850 90620997 90620850 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90619195 90619605 90619195 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90618245 90618405 90618245 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90617523 90617720 90617523 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90617288 90617387 90617288 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 CDS 90616426 90616712 90616426 ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1
chr6_3 three_prime_UTR 90616177 90616425 90616177 ID=Msa0964230-mRNA-1:three_prime_utr;Parent=Msa0964230-mRNA-1
chr6_3 three_prime_UTR 90616071 90616122 90616071 ID=Msa0964230-mRNA-1:three_prime_utr;Parent=Msa0964230-mRNA-1
Gene Sequence

>Msa0964230

ATGGCTACCAAAAGGGTTTTTGATGATTCTAATGATAAAGATCAAGACAATCCAAACGACAAACGAATGAAATCTACTAGACCTTCTTTTGCTTCTGTAATAGAAACAGCAGTTAATGTGCAAAACATGCGGAACTTTTTAGGAGCTTTGGAACCTTTTCTTAAAAGAGTGGTGAGTGAAGAGGTGGATAGAGCAATTGGAAACTGCTTTCCACCTTCCATCAATAGGTCACCTTCATTAAGAATCCAAGCACCAAGGGATCAACAACCAACCTTACAACTCTCATTCAACAAAAGGCTTTCCCTCCCAATTTTCACAGGTAGTAGAATACTCGACGCTGAAGGTAAGCCTATCTGCATAAGTCTTGTTGACAAAACAAACAACAACCAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTTGTACTTGATGGAGATTTTCCACATGATGAAAACGAGAATTGGACTAGTGAAGAATTCAATAAATACATAGTGAAGGAAAGAACTGGGAAGAGACCATTACTATCTGGAGAATTGAACCTTACTATGAGAGGTGGAATTGCACCAATAGGGGACATAGAGTTCACAGATAATTCTAGCTGGATAAAGTGCAGGAAGTTTAGAGTTGCAGTTAAGGTGAGTCATGGGAGTAATCAAAGTGTTAGGATTCAAGAAGGCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAACATCATCCACCAATGCTTGGCGATGATGTGTGGCGCCTAGAGAAGATAGGGAAAGATGGAGCTTTCCACCACAAAATGATGGCTAAAGGGATCAAAACAGTGCAAGACTTTCTTAAATTAGCAGTTATTGATACTCCAAAGCTAAGAGAGATTTTGGGCATGGGGATGTCTGATAGAATGTGGAAAGTCACAATAAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTATAGGTACCGTGGACCTCAATTTACCATTCTTCTGAATCCAATATGCAAATTAATTAAAGCTAATATCAATGGACAAGAATTTTCCAGCAGAGAGTACTTGAGCCAAATGAATAAGAGCTATATAGACAAATTGGTGGGAGAAGCATACACTAAATGGCATGAGTTGGAGGAAATTGATGGGGTTTTAAATGATAACATTGCTTTGTTAACCCAAGGTGATCAAACTGTGGAGCAATATCCAAACAATCATCCAGCAACAGTAGCAACAACATATCATCAGAATCAATATTATGGTGATCCATCTATAGAAAATATTGCTAGCTATCTACCAAGCAATAATGCACAAATGGCTAGCAGTGAGTGGGTATTGAGTCAAGCCTATACCACAACACCAAATGCAAATGGATTTCCTTTTGGCTTCACAGGCTCACAATCAGATGGGGACATGACACCTTCAGGTTCAGGCCCTAGGGACATTAATGGGTTCACAAGGCAACTTTAG

Protein sequence

>Msa0964230

MATKRVFDDSNDKDQDNPNDKRMKSTRPSFASVIETAVNVQNMRNFLGALEPFLKRVVSEEVDRAIGNCFPPSINRSPSLRIQAPRDQQPTLQLSFNKRLSLPIFTGSRILDAEGKPICISLVDKTNNNQIVPTSLPYPIKLEIVVLDGDFPHDENENWTSEEFNKYIVKERTGKRPLLSGELNLTMRGGIAPIGDIEFTDNSSWIKCRKFRVAVKVSHGSNQSVRIQEGMTEAFVVKDHRGELYKKHHPPMLGDDVWRLEKIGKDGAFHHKMMAKGIKTVQDFLKLAVIDTPKLREILGMGMSDRMWKVTIKHAMTCDMGSKIYRYRGPQFTILLNPICKLIKANINGQEFSSREYLSQMNKSYIDKLVGEAYTKWHELEEIDGVLNDNIALLTQGDQTVEQYPNNHPATVATTYHQNQYYGDPSIENIASYLPSNNAQMASSEWVLSQAYTTTPNANGFPFGFTGSQSDGDMTPSGSGPRDINGFTRQL*