Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964230 | XP_039683138.1 | 93.712 | 493 | 29 | 1 | 1 | 491 | 1 | 493 | 0.0 | 970 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964230 | sp|Q9C9T2|SARD1_ARATH | 49.167 | 480 | 210 | 11 | 1 | 476 | 1 | 450 | 4.64e-146 | 429 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0244190 | Msa0964230 | 0.805257 | 1.456499e-49 | -8.615850e-47 |
Msa0490380 | Msa0964230 | 0.802607 | 5.178298e-49 | -8.615850e-47 |
Msa0898320 | Msa0964230 | 0.813692 | 2.250188e-51 | -8.615850e-47 |
Msa0964230 | Msa0998460 | 0.804756 | 1.854255e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964230 | MtrunA17_Chr6g0484111 | 93.712 | 493 | 29 | 1 | 1 | 491 | 1 | 493 | 0.0 | 970 |
Msa0964230 | MtrunA17_Chr6g0484131 | 92.292 | 493 | 28 | 2 | 1 | 491 | 1 | 485 | 0.0 | 943 |
Msa0964230 | MtrunA17_Chr6g0484121 | 91.278 | 493 | 33 | 2 | 1 | 491 | 1 | 485 | 0.0 | 933 |
Msa0964230 | MtrunA17_Chr8g0391221 | 62.994 | 481 | 165 | 10 | 1 | 476 | 1 | 473 | 0.0 | 598 |
Msa0964230 | MtrunA17_Chr8g0391211 | 62.020 | 495 | 172 | 13 | 1 | 489 | 72 | 556 | 0.0 | 579 |
Msa0964230 | MtrunA17_Chr4g0072691 | 46.770 | 387 | 193 | 7 | 31 | 412 | 4 | 382 | 1.20e-114 | 350 |
Msa0964230 | MtrunA17_Chr4g0048161 | 46.582 | 395 | 195 | 8 | 2 | 390 | 13 | 397 | 2.49e-113 | 348 |
Msa0964230 | MtrunA17_Chr2g0281171 | 45.202 | 396 | 202 | 7 | 1 | 390 | 12 | 398 | 2.28e-112 | 345 |
Msa0964230 | MtrunA17_Chr2g0304831 | 41.348 | 445 | 234 | 9 | 4 | 440 | 11 | 436 | 1.39e-106 | 329 |
Msa0964230 | MtrunA17_Chr4g0059411 | 46.732 | 306 | 154 | 7 | 14 | 318 | 9 | 306 | 1.30e-80 | 260 |
Msa0964230 | MtrunA17_Chr7g0271691 | 34.857 | 350 | 209 | 9 | 50 | 393 | 44 | 380 | 5.62e-51 | 181 |
Msa0964230 | MtrunA17_Chr7g0271671 | 33.333 | 342 | 215 | 9 | 46 | 381 | 56 | 390 | 2.05e-45 | 167 |
Msa0964230 | MtrunA17_Chr7g0271681 | 35.593 | 295 | 177 | 7 | 92 | 379 | 10 | 298 | 5.03e-43 | 159 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0964230 | AT1G73805.1 | 49.167 | 480 | 210 | 11 | 1 | 476 | 1 | 450 | 4.71e-147 | 429 |
Msa0964230 | AT5G57580.1 | 47.258 | 383 | 185 | 7 | 9 | 385 | 17 | 388 | 1.63e-113 | 349 |
Msa0964230 | AT4G25800.1 | 45.570 | 395 | 195 | 8 | 4 | 390 | 2 | 384 | 2.12e-109 | 337 |
Msa0964230 | AT4G25800.2 | 45.570 | 395 | 195 | 8 | 4 | 390 | 2 | 384 | 2.12e-109 | 337 |
Msa0964230 | AT2G18750.3 | 42.067 | 416 | 228 | 7 | 4 | 416 | 16 | 421 | 1.09e-107 | 333 |
Msa0964230 | AT2G18750.2 | 42.067 | 416 | 228 | 7 | 4 | 416 | 16 | 421 | 1.09e-107 | 333 |
Msa0964230 | AT2G18750.1 | 42.067 | 416 | 228 | 7 | 4 | 416 | 16 | 421 | 1.09e-107 | 333 |
Msa0964230 | AT2G24300.3 | 42.784 | 388 | 213 | 6 | 4 | 387 | 7 | 389 | 1.60e-96 | 304 |
Msa0964230 | AT2G24300.2 | 42.784 | 388 | 213 | 6 | 4 | 387 | 3 | 385 | 1.85e-96 | 303 |
Msa0964230 | AT4G31000.1 | 40.984 | 427 | 229 | 11 | 11 | 425 | 13 | 428 | 4.60e-95 | 299 |
Msa0964230 | AT2G24300.1 | 44.012 | 334 | 180 | 5 | 58 | 387 | 8 | 338 | 5.25e-85 | 272 |
Msa0964230 | AT5G62570.4 | 38.400 | 375 | 206 | 9 | 1 | 366 | 1 | 359 | 9.60e-85 | 266 |
Msa0964230 | AT5G62570.1 | 37.405 | 393 | 221 | 9 | 1 | 384 | 1 | 377 | 1.83e-84 | 270 |
Msa0964230 | AT5G62570.2 | 38.950 | 362 | 200 | 8 | 32 | 384 | 13 | 362 | 3.48e-82 | 263 |
Msa0964230 | AT4G31000.2 | 38.259 | 379 | 198 | 10 | 58 | 425 | 54 | 407 | 1.54e-71 | 237 |
Msa0964230 | AT5G62570.3 | 40.264 | 303 | 161 | 7 | 1 | 298 | 1 | 288 | 2.66e-68 | 221 |
Msa0964230 | AT5G26920.3 | 35.000 | 360 | 214 | 7 | 29 | 384 | 24 | 367 | 8.53e-68 | 224 |
Msa0964230 | AT5G26920.1 | 35.278 | 360 | 213 | 8 | 29 | 384 | 24 | 367 | 8.11e-67 | 225 |
Msa0964230 | AT5G26920.2 | 35.000 | 360 | 206 | 9 | 29 | 384 | 24 | 359 | 1.61e-63 | 216 |
Find 136 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACTTTGACACACTATTT+AGG | 0.149643 | 6_3:+90616090 | None:intergenic |
TAAAATTTGTAGGAATTTAA+TGG | 0.161623 | 6_3:+90616211 | None:intergenic |
ACAACAATCTCTAGCTTTAT+AGG | 0.214346 | 6_3:+90619488 | None:intergenic |
CTAGAGATTGTTGTACTTGA+TGG | 0.248608 | 6_3:-90619479 | Msa0964230:CDS |
TTCGACAACTCAGATTTATT+TGG | 0.254774 | 6_3:-90616328 | Msa0964230:three_prime_UTR |
GAAGACTTGTTGGAACAATT+TGG | 0.268874 | 6_3:+90619516 | None:intergenic |
GCTTTAATTAATTTGCATAT+TGG | 0.279068 | 6_3:+90617578 | None:intergenic |
ACATCAAAACCTTAACTCTT+TGG | 0.284205 | 6_3:-90622128 | Msa0964230:five_prime_UTR |
AGTTTCATACCTGTGAAAAT+TGG | 0.291885 | 6_3:+90620840 | None:intergenic |
TTGCTTACTATAAAATTTGT+AGG | 0.293623 | 6_3:+90616201 | None:intergenic |
TGACTTTGACACACTATTTA+GGG | 0.294787 | 6_3:+90616091 | None:intergenic |
TTATAGTAAGCAAATATAAT+AGG | 0.302924 | 6_3:-90616191 | Msa0964230:three_prime_UTR |
ACTGTTGCTGGATGATTGTT+TGG | 0.310236 | 6_3:+90616667 | None:intergenic |
TATGTTGTTGCTACTGTTGC+TGG | 0.313492 | 6_3:+90616655 | None:intergenic |
TGCATTTGGTGTTGTGGTAT+AGG | 0.314012 | 6_3:+90616528 | None:intergenic |
CACATGATGAAAACGAGAAT+TGG | 0.319514 | 6_3:-90619448 | Msa0964230:CDS |
AATGCAAATGGATTTCCTTT+TGG | 0.323071 | 6_3:-90616511 | Msa0964230:CDS |
TATCATCAGAATCAATATTA+TGG | 0.324552 | 6_3:-90616634 | Msa0964230:CDS |
TCAGGCCCTAGGGACATTAA+TGG | 0.328554 | 6_3:-90616445 | Msa0964230:CDS |
AACTTTAGATATATTAAATT+CGG | 0.335431 | 6_3:-90616411 | Msa0964230:exon |
GAATTTAATGGAATAGGATT+TGG | 0.336583 | 6_3:+90616223 | None:intergenic |
TTGTAGGAATTTAATGGAAT+AGG | 0.340830 | 6_3:+90616217 | None:intergenic |
TATATTGTACCTTATTCATT+TGG | 0.342595 | 6_3:+90617513 | None:intergenic |
GCAGAGCTATATAGACAAAT+TGG | 0.351232 | 6_3:-90617369 | Msa0964230:intron |
TGGGAGAAGCATACACTAAA+TGG | 0.359718 | 6_3:-90617346 | Msa0964230:CDS |
GTACTTGAGCCAAATGAATA+AGG | 0.364385 | 6_3:-90617522 | Msa0964230:intron |
AAAGGAAATCCATTTGCATT+TGG | 0.365748 | 6_3:+90616514 | None:intergenic |
GATTTCATTCGTTTGTCGTT+TGG | 0.366146 | 6_3:+90622031 | None:intergenic |
GAAGAGGTGGATAGAGCAAT+TGG | 0.372285 | 6_3:-90620969 | Msa0964230:CDS |
GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | 6_3:-90619210 | Msa0964230:CDS |
ATATATACCTCTCTTAGCTT+TGG | 0.385685 | 6_3:+90618237 | None:intergenic |
CAACAATCTCTAGCTTTATA+GGG | 0.387802 | 6_3:+90619489 | None:intergenic |
GCTTTCCACCTTCCATCAAT+AGG | 0.389606 | 6_3:-90620941 | Msa0964230:CDS |
ATAGGGTAAGGAAGACTTGT+TGG | 0.390458 | 6_3:+90619506 | None:intergenic |
AGATATATTAAATTCGGATC+TGG | 0.393039 | 6_3:-90616405 | Msa0964230:three_prime_UTR |
CAGGCCCTAGGGACATTAAT+GGG | 0.400626 | 6_3:-90616444 | Msa0964230:CDS |
GTTGTTGATCCCTTGGTGCT+TGG | 0.401027 | 6_3:+90620901 | None:intergenic |
GTTTCATACCTGTGAAAATT+GGG | 0.401177 | 6_3:+90620841 | None:intergenic |
GACATGACACCTTCAGGTTC+AGG | 0.402336 | 6_3:-90616463 | Msa0964230:CDS |
GATGGGGACATGACACCTTC+AGG | 0.405456 | 6_3:-90616469 | Msa0964230:CDS |
ATAGTGTGTCAAAGTCAAAA+TGG | 0.408567 | 6_3:-90616085 | Msa0964230:three_prime_UTR |
TAATGAAGGTGACCTATTGA+TGG | 0.408912 | 6_3:+90620929 | None:intergenic |
GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | 6_3:-90618345 | Msa0964230:CDS |
AGAGGTGGAATTGCACCAAT+AGG | 0.414309 | 6_3:-90619341 | Msa0964230:CDS |
GAAGTTTAGAGTTGCAGTTA+AGG | 0.415779 | 6_3:-90619276 | Msa0964230:CDS |
TACATAGTGAAGGAAAGAAC+TGG | 0.419237 | 6_3:-90619404 | Msa0964230:CDS |
TACAACTCTCATTCAACAAA+AGG | 0.425881 | 6_3:-90620872 | Msa0964230:CDS |
TCAACAAGACTTATGCAGAT+AGG | 0.429243 | 6_3:+90619554 | None:intergenic |
TATTATGAACCAAAGAGTTA+AGG | 0.431433 | 6_3:+90622119 | None:intergenic |
AAGGTTGGTTGTTGATCCCT+TGG | 0.434839 | 6_3:+90620894 | None:intergenic |
GAGGTGGAATTGCACCAATA+GGG | 0.441247 | 6_3:-90619340 | Msa0964230:CDS |
GCCATTTGTGCATTATTGCT+TGG | 0.446016 | 6_3:+90616577 | None:intergenic |
TTGTCCATCCGGTCTTCAAT+CGG | 0.447458 | 6_3:+90616276 | None:intergenic |
ATCTCTAGCTTTATAGGGTA+AGG | 0.447610 | 6_3:+90619494 | None:intergenic |
CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | 6_3:+90618337 | None:intergenic |
ACCACAAAATGATGGCTAAA+GGG | 0.453700 | 6_3:-90618305 | Msa0964230:CDS |
ACCACAACACCAAATGCAAA+TGG | 0.454821 | 6_3:-90616523 | Msa0964230:CDS |
ATGGGAGTAATCAAAGTGTT+AGG | 0.455811 | 6_3:-90619247 | Msa0964230:CDS |
ACCAAGCAATAATGCACAAA+TGG | 0.456153 | 6_3:-90616578 | Msa0964230:CDS |
GGGAAGAGACCATTACTATC+TGG | 0.456852 | 6_3:-90619383 | Msa0964230:CDS |
ACATGGGGAGCAAGATCTAT+AGG | 0.460309 | 6_3:-90617634 | Msa0964230:CDS |
TTAATTAAAGCTAATATCAA+TGG | 0.468078 | 6_3:-90617566 | Msa0964230:CDS |
TTTGTTGAATGAGAGTTGTA+AGG | 0.470397 | 6_3:+90620875 | None:intergenic |
CATGAGTTGGAGGAAATTGA+TGG | 0.472593 | 6_3:-90617323 | Msa0964230:CDS |
TCCATTTGCATTTGGTGTTG+TGG | 0.474676 | 6_3:+90616522 | None:intergenic |
GCATATTGGATTCAGAAGAA+TGG | 0.478493 | 6_3:+90617592 | None:intergenic |
CACCACAAAATGATGGCTAA+AGG | 0.480596 | 6_3:-90618306 | Msa0964230:CDS |
CAATTCCACCTCTCATAGTA+AGG | 0.486241 | 6_3:+90619351 | None:intergenic |
TTGGCTCAAGTACTCTCTGC+TGG | 0.488877 | 6_3:+90617532 | None:intergenic |
CACTAAATGGCATGAGTTGG+AGG | 0.489488 | 6_3:-90617333 | Msa0964230:CDS |
GTGAACTCTATGTCCCCTAT+TGG | 0.493891 | 6_3:+90619326 | None:intergenic |
CACAAATGGCTAGCAGTGAG+TGG | 0.507674 | 6_3:-90616564 | Msa0964230:CDS |
CACCTTCAGGTTCAGGCCCT+AGG | 0.507892 | 6_3:-90616456 | Msa0964230:CDS |
CACACATCATCGCCAAGCAT+TGG | 0.517632 | 6_3:+90618363 | None:intergenic |
AAACATCATCCACCAATGCT+TGG | 0.524035 | 6_3:-90618375 | Msa0964230:CDS |
AACATTGCTTTGTTAACCCA+AGG | 0.527734 | 6_3:-90617287 | Msa0964230:intron |
CTCAGCCACCGATTGAAGAC+CGG | 0.529461 | 6_3:-90616284 | Msa0964230:three_prime_UTR |
TTGCAGTTAAGGTGAGTCAT+GGG | 0.530954 | 6_3:-90619265 | Msa0964230:CDS |
TGGTTAGGTGAGTGAAGAGG+TGG | 0.534317 | 6_3:-90620982 | Msa0964230:intron |
GGTGCTTGGATTCTTAATGA+AGG | 0.535525 | 6_3:+90620915 | None:intergenic |
ATTCTAGCTGGATAAAGTGC+AGG | 0.537572 | 6_3:-90619298 | Msa0964230:CDS |
ACCTTCAGGTTCAGGCCCTA+GGG | 0.544812 | 6_3:-90616455 | Msa0964230:CDS |
GTTGCAGTTAAGGTGAGTCA+TGG | 0.545016 | 6_3:-90619266 | Msa0964230:CDS |
ATGAGTTGGAGGAAATTGAT+GGG | 0.546736 | 6_3:-90617322 | Msa0964230:CDS |
TTGAATGAGAGTTGTAAGGT+TGG | 0.548181 | 6_3:+90620879 | None:intergenic |
GTGAACCCATTAATGTCCCT+AGG | 0.550210 | 6_3:+90616439 | None:intergenic |
TTCACAGGCTCACAATCAGA+TGG | 0.552859 | 6_3:-90616487 | Msa0964230:CDS |
AGTTCACAGATAATTCTAGC+TGG | 0.556731 | 6_3:-90619310 | Msa0964230:CDS |
ACATCATCGCCAAGCATTGG+TGG | 0.557359 | 6_3:+90618366 | None:intergenic |
TTCAGAAGAATGGTAAATTG+AGG | 0.561852 | 6_3:+90617602 | None:intergenic |
TCCATCCGGTCTTCAATCGG+TGG | 0.564111 | 6_3:+90616279 | None:intergenic |
TGTGAGCCTGTGAAGCCAAA+AGG | 0.567683 | 6_3:+90616496 | None:intergenic |
CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | 6_3:-90618336 | Msa0964230:CDS |
CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | 6_3:-90619236 | Msa0964230:CDS |
TCACAGGCTCACAATCAGAT+GGG | 0.585164 | 6_3:-90616486 | Msa0964230:CDS |
TGAACCCATTAATGTCCCTA+GGG | 0.585537 | 6_3:+90616440 | None:intergenic |
AGTGCATACGAAGCAAAAGA+AGG | 0.588320 | 6_3:+90622001 | None:intergenic |
TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | 6_3:-90618344 | Msa0964230:CDS |
AGCTTTCCACCACAAAATGA+TGG | 0.589747 | 6_3:-90618313 | Msa0964230:CDS |
AGGTGGAATTGCACCAATAG+GGG | 0.589819 | 6_3:-90619339 | Msa0964230:CDS |
TTCAATTCTCCAGATAGTAA+TGG | 0.589851 | 6_3:+90619374 | None:intergenic |
CAATGCTTGGCGATGATGTG+TGG | 0.590954 | 6_3:-90618362 | Msa0964230:CDS |
GACTTTGACACACTATTTAG+GGG | 0.592829 | 6_3:+90616092 | None:intergenic |
ATACACTAAATGGCATGAGT+TGG | 0.593858 | 6_3:-90617336 | Msa0964230:CDS |
TGAGTTGGAGGAAATTGATG+GGG | 0.594581 | 6_3:-90617321 | Msa0964230:CDS |
ATTCAATAAATACATAGTGA+AGG | 0.602832 | 6_3:-90619414 | Msa0964230:CDS |
CATACCTGTGAAAATTGGGA+GGG | 0.602874 | 6_3:+90620845 | None:intergenic |
TCATACCTGTGAAAATTGGG+AGG | 0.603052 | 6_3:+90620844 | None:intergenic |
GAATTGAACCTTACTATGAG+AGG | 0.607156 | 6_3:-90619359 | Msa0964230:CDS |
GAATGGTAAATTGAGGTCCA+CGG | 0.610553 | 6_3:+90617609 | None:intergenic |
GAGCTATATAGACAAATTGG+TGG | 0.612340 | 6_3:-90617366 | Msa0964230:CDS |
TTACATGAAGCAGTTACAGC+AGG | 0.612640 | 6_3:+90616378 | None:intergenic |
TTGAACCTTACTATGAGAGG+TGG | 0.618381 | 6_3:-90619356 | Msa0964230:CDS |
TCCCTAGGGCCTGAACCTGA+AGG | 0.620292 | 6_3:+90616454 | None:intergenic |
AGCTATATAGACAAATTGGT+GGG | 0.623492 | 6_3:-90617365 | Msa0964230:CDS |
GCATGCAATGACTTGTGACA+TGG | 0.626229 | 6_3:-90617651 | Msa0964230:CDS |
AGTAGAATACTCGACGCTGA+AGG | 0.629771 | 6_3:-90619581 | Msa0964230:CDS |
ATTTGGTTAGGTGAGTGAAG+AGG | 0.632675 | 6_3:-90620985 | Msa0964230:intron |
ACATAGTGAAGGAAAGAACT+GGG | 0.634050 | 6_3:-90619403 | Msa0964230:CDS |
ACAAATGGCTAGCAGTGAGT+GGG | 0.635035 | 6_3:-90616563 | Msa0964230:CDS |
ATTAAGAATCCAAGCACCAA+GGG | 0.638386 | 6_3:-90620910 | Msa0964230:CDS |
CAGTTAATGTGCAAAACATG+CGG | 0.638840 | 6_3:-90621822 | Msa0964230:CDS |
GCCACCGATTGAAGACCGGA+TGG | 0.641777 | 6_3:-90616280 | Msa0964230:three_prime_UTR |
CATTAAGAATCCAAGCACCA+AGG | 0.647255 | 6_3:-90620911 | Msa0964230:CDS |
GGGACATTAATGGGTTCACA+AGG | 0.658302 | 6_3:-90616435 | Msa0964230:CDS |
AGCAAGATCTATAGGTACCG+TGG | 0.658732 | 6_3:-90617626 | Msa0964230:CDS |
GGTGACCTATTGATGGAAGG+TGG | 0.664907 | 6_3:+90620936 | None:intergenic |
TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | 6_3:-90618244 | Msa0964230:intron |
CATGCAATGACTTGTGACAT+GGG | 0.667953 | 6_3:-90617650 | Msa0964230:CDS |
CACAGGCTCACAATCAGATG+GGG | 0.673448 | 6_3:-90616485 | Msa0964230:CDS |
GAAGGTGACCTATTGATGGA+AGG | 0.674542 | 6_3:+90620933 | None:intergenic |
TGGGGATGTCTGATAGAATG+TGG | 0.679640 | 6_3:-90617688 | Msa0964230:CDS |
TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | 6_3:-90619200 | Msa0964230:CDS |
GATTCAAGAAGGCATGACTG+AGG | 0.696401 | 6_3:-90619225 | Msa0964230:CDS |
AATTATAGGTGATCAAACTG+TGG | 0.703154 | 6_3:-90616698 | Msa0964230:intron |
ATGCAATGACTTGTGACATG+GGG | 0.729736 | 6_3:-90617649 | Msa0964230:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGATATTATCTTAAAATTTA+AGG | - | chr6_3:90616763-90616782 | Msa0964230:intron | 10.0% |
!!! | TTTTTTATTAAAAATGGTAA+AGG | + | chr6_3:90616855-90616874 | None:intergenic | 10.0% |
!! | TCTATTTAAGAAAAAAAAAT+TGG | + | chr6_3:90617612-90617631 | None:intergenic | 10.0% |
!! | TACAAATTATAATACAATTA+AGG | + | chr6_3:90618083-90618102 | None:intergenic | 10.0% |
!! | ATAAACTTAAATTACTAAAA+AGG | + | chr6_3:90618133-90618152 | None:intergenic | 10.0% |
!! | CATCTTATTAATATATTTAA+GGG | + | chr6_3:90619257-90619276 | None:intergenic | 10.0% |
!!! | TTTTGAAATACTTTATAAAA+TGG | + | chr6_3:90621434-90621453 | None:intergenic | 10.0% |
!! | TAAAATGTAATTAACTATTT+GGG | + | chr6_3:90621475-90621494 | None:intergenic | 10.0% |
!! | ATAAAATGTAATTAACTATT+TGG | + | chr6_3:90621476-90621495 | None:intergenic | 10.0% |
!! | AACTTTAGATATATTAAATT+CGG | - | chr6_3:90621814-90621833 | Msa0964230:CDS | 10.0% |
!!! | TAATAACACTTTTGAAAAAA+TGG | - | chr6_3:90616124-90616143 | Msa0964230:intron | 15.0% |
!! | ATACAAATATATTGTTTGTT+GGG | + | chr6_3:90616631-90616650 | None:intergenic | 15.0% |
!! | TATACAAATATATTGTTTGT+TGG | + | chr6_3:90616632-90616651 | None:intergenic | 15.0% |
!!! | TAATATGATTCTCTAAAAAA+TGG | - | chr6_3:90616792-90616811 | Msa0964230:intron | 15.0% |
!!! | TATTTTCTTAAAAATGGTAA+AGG | + | chr6_3:90616830-90616849 | None:intergenic | 15.0% |
!!! | AATTTTAAGGTTGTTTAATA+TGG | + | chr6_3:90616957-90616976 | None:intergenic | 15.0% |
!! | ACTTTATTATATGATTCATT+TGG | - | chr6_3:90617223-90617242 | Msa0964230:intron | 15.0% |
!!! | TTTTTTTTCTTAAATAGAGA+AGG | - | chr6_3:90617614-90617633 | Msa0964230:CDS | 15.0% |
!! | TTGAAATGAAAAAAAGATAA+AGG | + | chr6_3:90618008-90618027 | None:intergenic | 15.0% |
!! | CTTAAAAATTCATATGAAAA+TGG | + | chr6_3:90617859-90617878 | None:intergenic | 15.0% |
!!! | TTCATGATTTTATTTTCTTA+TGG | - | chr6_3:90617886-90617905 | Msa0964230:intron | 15.0% |
!!! | ATCTTTTTTTCATTTCAATT+TGG | + | chr6_3:90617823-90617842 | None:intergenic | 15.0% |
!! | TTGAAATGAAAAAAAGATAA+AGG | - | chr6_3:90618008-90618027 | Msa0964230:intron | 15.0% |
!! | TAGCATGATATATTATTTAT+TGG | - | chr6_3:90619160-90619179 | Msa0964230:intron | 15.0% |
!! | CCATCTTATTAATATATTTA+AGG | + | chr6_3:90619258-90619277 | None:intergenic | 15.0% |
!! | CCTTAAATATATTAATAAGA+TGG | - | chr6_3:90619255-90619274 | Msa0964230:CDS | 15.0% |
!!! | TTTTTTTAACATGTATCATT+AGG | + | chr6_3:90619406-90619425 | None:intergenic | 15.0% |
!! | TTATATTTAGTATTTACACA+AGG | - | chr6_3:90619609-90619628 | Msa0964230:intron | 15.0% |
!! | AGGTATATATCTTTATAATT+AGG | - | chr6_3:90620001-90620020 | Msa0964230:intron | 15.0% |
!! | GGTATATATCTTTATAATTA+GGG | - | chr6_3:90620002-90620021 | Msa0964230:intron | 15.0% |
!! | GTATATATCTTTATAATTAG+GGG | - | chr6_3:90620003-90620022 | Msa0964230:intron | 15.0% |
!!! | TAAGTTTAATTTCAAATTTG+AGG | + | chr6_3:90620222-90620241 | None:intergenic | 15.0% |
!! | TTAATTAAAGCTAATATCAA+TGG | - | chr6_3:90620659-90620678 | Msa0964230:intron | 15.0% |
!!! | TTTTTAATTGAAAATACCTT+GGG | + | chr6_3:90620957-90620976 | None:intergenic | 15.0% |
!!! | ATTTTTAATTGAAAATACCT+TGG | + | chr6_3:90620958-90620977 | None:intergenic | 15.0% |
!! | GTTAATATGAACTTAATTAT+AGG | - | chr6_3:90621513-90621532 | Msa0964230:intron | 15.0% |
!! | TAAAATTTGTAGGAATTTAA+TGG | + | chr6_3:90622017-90622036 | None:intergenic | 15.0% |
!! | TTATAGTAAGCAAATATAAT+AGG | - | chr6_3:90622034-90622053 | Msa0964230:CDS | 15.0% |
!!! | ATACATATTTGAAGTTAATG+TGG | - | chr6_3:90616549-90616568 | Msa0964230:CDS | 20.0% |
!!! | TGTACAAAAATATTGTTGTT+AGG | - | chr6_3:90616718-90616737 | Msa0964230:intron | 20.0% |
!!! | AAGGTCTATTTTCTTAAAAA+TGG | + | chr6_3:90616836-90616855 | None:intergenic | 20.0% |
!!! | CAAGACTCAAATAAATTTTA+AGG | + | chr6_3:90616970-90616989 | None:intergenic | 20.0% |
!! | ATTATATGATTCATTTGGTT+AGG | - | chr6_3:90617228-90617247 | Msa0964230:intron | 20.0% |
!! | TTAAGAAAAAAAAATTGGCT+CGG | + | chr6_3:90617607-90617626 | None:intergenic | 20.0% |
!! | TTATTTACATTTACCTAAGT+AGG | + | chr6_3:90617720-90617739 | None:intergenic | 20.0% |
!! | GTTACCTAAAATAAAGTTAA+GGG | + | chr6_3:90617790-90617809 | None:intergenic | 20.0% |
!! | TGTTACCTAAAATAAAGTTA+AGG | + | chr6_3:90617791-90617810 | None:intergenic | 20.0% |
!!! | CTTTATTTTAGGTAACAATT+TGG | - | chr6_3:90617794-90617813 | Msa0964230:intron | 20.0% |
!!! | ATAGTCTTGTAAATATCAAA+AGG | - | chr6_3:90618240-90618259 | Msa0964230:intron | 20.0% |
!!! | TAGTCTTGTAAATATCAAAA+GGG | - | chr6_3:90618241-90618260 | Msa0964230:intron | 20.0% |
!!! | TATGAAACATGCTTTTAAAT+AGG | - | chr6_3:90618338-90618357 | Msa0964230:CDS | 20.0% |
!! | ATAAATTCGGTAATCAAATT+TGG | + | chr6_3:90618532-90618551 | None:intergenic | 20.0% |
!! | ATTCAATAAATACATAGTGA+AGG | - | chr6_3:90618811-90618830 | Msa0964230:intron | 20.0% |
!!! | CTTTTATTTTCAACTAACTT+TGG | - | chr6_3:90619210-90619229 | Msa0964230:CDS | 20.0% |
!!! | ATAGGGTAAATGATTTTTAT+TGG | - | chr6_3:90619554-90619573 | Msa0964230:CDS | 20.0% |
!! | AAGAAATTGATCTTGTATAA+CGG | + | chr6_3:90620182-90620201 | None:intergenic | 20.0% |
!!! | ATTTATCTGAAATCAGATTT+TGG | - | chr6_3:90620511-90620530 | Msa0964230:intron | 20.0% |
!!! | TTTATCTGAAATCAGATTTT+GGG | - | chr6_3:90620512-90620531 | Msa0964230:intron | 20.0% |
!!! | GCTTTAATTAATTTGCATAT+TGG | + | chr6_3:90620650-90620669 | None:intergenic | 20.0% |
!! | TATATTGTACCTTATTCATT+TGG | + | chr6_3:90620715-90620734 | None:intergenic | 20.0% |
!! | AATTCAAACATTCAAGATAT+TGG | + | chr6_3:90621286-90621305 | None:intergenic | 20.0% |
!! | TATCATCAGAATCAATATTA+TGG | - | chr6_3:90621591-90621610 | Msa0964230:intron | 20.0% |
!! | TTGCTTACTATAAAATTTGT+AGG | + | chr6_3:90622027-90622046 | None:intergenic | 20.0% |
! | TATTATGAACCAAAGAGTTA+AGG | + | chr6_3:90616109-90616128 | None:intergenic | 25.0% |
!! | ACTTCAAATATGTATGCTTT+TGG | + | chr6_3:90616544-90616563 | None:intergenic | 25.0% |
! | GTCATCTCTTAATTCTTATT+AGG | + | chr6_3:90616609-90616628 | None:intergenic | 25.0% |
!! | AATATAGCTTGTGAAAATTG+AGG | - | chr6_3:90616679-90616698 | Msa0964230:CDS | 25.0% |
!! | ATATAGCTTGTGAAAATTGA+GGG | - | chr6_3:90616680-90616699 | Msa0964230:CDS | 25.0% |
! | ATCAAATATTTACAGTCATG+TGG | + | chr6_3:90616747-90616766 | None:intergenic | 25.0% |
! | AATTGGAGATTTCATATTGA+CGG | + | chr6_3:90617048-90617067 | None:intergenic | 25.0% |
! | TTGTAACTCTAACTATCTAA+GGG | + | chr6_3:90617439-90617458 | None:intergenic | 25.0% |
! | TTTGTAACTCTAACTATCTA+AGG | + | chr6_3:90617440-90617459 | None:intergenic | 25.0% |
!!! | TAGTCCCTTAACTTTATTTT+AGG | - | chr6_3:90617783-90617802 | Msa0964230:intron | 25.0% |
! | TCATATGAAAATGGATCAAA+AGG | + | chr6_3:90617850-90617869 | None:intergenic | 25.0% |
! | CTTGAAAATGTATATGAGAA+TGG | - | chr6_3:90617970-90617989 | Msa0964230:intron | 25.0% |
! | TGTTACCTGAAATTAAGTTA+AGG | - | chr6_3:90618038-90618057 | Msa0964230:intron | 25.0% |
! | GTTACCTGAAATTAAGTTAA+GGG | - | chr6_3:90618039-90618058 | Msa0964230:intron | 25.0% |
! | ACATTAATCTATTAGTTCGT+TGG | - | chr6_3:90618273-90618292 | Msa0964230:CDS | 25.0% |
!!! | CTTTCATAGGCTTATTTTTT+AGG | + | chr6_3:90618404-90618423 | None:intergenic | 25.0% |
! | CTAAAAAATAAGCCTATGAA+AGG | - | chr6_3:90618402-90618421 | Msa0964230:intron | 25.0% |
! | TCTATAGTACAACTAAAAGT+GGG | + | chr6_3:90619283-90619302 | None:intergenic | 25.0% |
! | TGTACTATAGACTATGAAAT+AGG | - | chr6_3:90619292-90619311 | Msa0964230:CDS | 25.0% |
!!! | AACATTTGGCTTTGTATAAT+AGG | - | chr6_3:90619536-90619555 | Msa0964230:CDS | 25.0% |
!!! | ACATTTGGCTTTGTATAATA+GGG | - | chr6_3:90619537-90619556 | Msa0964230:CDS | 25.0% |
!! | TCTTTATGCTAATTTTGTTC+AGG | - | chr6_3:90620065-90620084 | Msa0964230:intron | 25.0% |
! | TAACTCGTTTGTTTATTTGA+AGG | - | chr6_3:90620251-90620270 | Msa0964230:intron | 25.0% |
! | TGCTCTTATAATACATGTTA+AGG | - | chr6_3:90620287-90620306 | Msa0964230:intron | 25.0% |
!! | TAGTATTTTACTTTACTTCG+TGG | - | chr6_3:90620766-90620785 | Msa0964230:intron | 25.0% |
! | TGACATTATATGCTAGATAT+TGG | - | chr6_3:90620790-90620809 | Msa0964230:intron | 25.0% |
!!! | GTCCTCTAATTCATTTTAAT+TGG | - | chr6_3:90620812-90620831 | Msa0964230:intron | 25.0% |
! | CACCAATTAAAATGAATTAG+AGG | + | chr6_3:90620817-90620836 | None:intergenic | 25.0% |
! | ATTCAAGATATTGGTCATAT+CGG | + | chr6_3:90621277-90621296 | None:intergenic | 25.0% |
! | AAACAAATTCATGTTTAGAG+TGG | - | chr6_3:90621333-90621352 | Msa0964230:intron | 25.0% |
!! | CTAGCAATATTTTCTATAGA+TGG | + | chr6_3:90621621-90621640 | None:intergenic | 25.0% |
! | AGATATATTAAATTCGGATC+TGG | - | chr6_3:90621820-90621839 | Msa0964230:CDS | 25.0% |
! | GAATTTAATGGAATAGGATT+TGG | + | chr6_3:90622005-90622024 | None:intergenic | 25.0% |
! | TTGTAGGAATTTAATGGAAT+AGG | + | chr6_3:90622011-90622030 | None:intergenic | 25.0% |
ACATCAAAACCTTAACTCTT+TGG | - | chr6_3:90616097-90616116 | Msa0964230:three_prime_UTR | 30.0% | |
TTGAAAAAATGGCTACCAAA+AGG | - | chr6_3:90616135-90616154 | Msa0964230:intron | 30.0% | |
TGAAAAAATGGCTACCAAAA+GGG | - | chr6_3:90616136-90616155 | Msa0964230:intron | 30.0% | |
! | AGAATCATCAAAAACCCTTT+TGG | + | chr6_3:90616153-90616172 | None:intergenic | 30.0% |
ATGTATAGTAGTTTCTTGCA+TGG | + | chr6_3:90616303-90616322 | None:intergenic | 30.0% | |
!! | CTTACCACTCTTTTAAGAAA+AGG | + | chr6_3:90616450-90616469 | None:intergenic | 30.0% |
AAGGTTGTTTAATATGGATC+CGG | + | chr6_3:90616951-90616970 | None:intergenic | 30.0% | |
TTAATGCAAGCTTCATAGTT+AGG | + | chr6_3:90617117-90617136 | None:intergenic | 30.0% | |
TTTGTTGAATGAGAGTTGTA+AGG | + | chr6_3:90617353-90617372 | None:intergenic | 30.0% | |
TACAACTCTCATTCAACAAA+AGG | - | chr6_3:90617353-90617372 | Msa0964230:CDS | 30.0% | |
GTTTCATACCTGTGAAAATT+GGG | + | chr6_3:90617387-90617406 | None:intergenic | 30.0% | |
AGTTTCATACCTGTGAAAAT+TGG | + | chr6_3:90617388-90617407 | None:intergenic | 30.0% | |
! | CTTTTCTATCTCTAAACTTC+CGG | + | chr6_3:90617489-90617508 | None:intergenic | 30.0% |
TAATTTAGTCGCTAACTGTT+AGG | - | chr6_3:90617523-90617542 | Msa0964230:CDS | 30.0% | |
AATTTAGTCGCTAACTGTTA+GGG | - | chr6_3:90617524-90617543 | Msa0964230:CDS | 30.0% | |
CGAAGCCTATTTAACTAAAA+AGG | - | chr6_3:90617648-90617667 | Msa0964230:CDS | 30.0% | |
!!! | CCTTGCCTTTTTAGTTAAAT+AGG | + | chr6_3:90617656-90617675 | None:intergenic | 30.0% |
CCTATTTAACTAAAAAGGCA+AGG | - | chr6_3:90617653-90617672 | Msa0964230:CDS | 30.0% | |
AAAAACCTCTTAATCCTATC+AGG | - | chr6_3:90617690-90617709 | Msa0964230:CDS | 30.0% | |
TTACATTTACCTAAGTAGGT+TGG | + | chr6_3:90617716-90617735 | None:intergenic | 30.0% | |
TTCTTATGCAAACATAGACA+AGG | + | chr6_3:90617936-90617955 | None:intergenic | 30.0% | |
GTATATGAGAATGGACAAAA+AGG | - | chr6_3:90617979-90617998 | Msa0964230:intron | 30.0% | |
! | CTTAATTTCAGGTAACAGTT+TGG | + | chr6_3:90618035-90618054 | None:intergenic | 30.0% |
TAGTCCCTTAACTTAATTTC+AGG | + | chr6_3:90618046-90618065 | None:intergenic | 30.0% | |
! | TAAGCCTTAAATCTTTTGAC+AGG | - | chr6_3:90618439-90618458 | Msa0964230:intron | 30.0% |
! | AACGACGAAGAGTATAAATT+CGG | + | chr6_3:90618545-90618564 | None:intergenic | 30.0% |
!! | CAACAATCTCTAGCTTTATA+GGG | + | chr6_3:90618739-90618758 | None:intergenic | 30.0% |
!! | ACAACAATCTCTAGCTTTAT+AGG | + | chr6_3:90618740-90618759 | None:intergenic | 30.0% |
TTCAATTCTCCAGATAGTAA+TGG | + | chr6_3:90618854-90618873 | None:intergenic | 30.0% | |
CTATAGTACAACTAAAAGTG+GGG | + | chr6_3:90619282-90619301 | None:intergenic | 30.0% | |
GTCTATAGTACAACTAAAAG+TGG | + | chr6_3:90619284-90619303 | None:intergenic | 30.0% | |
! | CATTTTATAGCAGCTAGTTA+AGG | - | chr6_3:90619352-90619371 | Msa0964230:CDS | 30.0% |
! | GCTCTTAAAAGCACATATTA+AGG | + | chr6_3:90619509-90619528 | None:intergenic | 30.0% |
! | TAAGAGCACACATTAACATT+TGG | - | chr6_3:90619522-90619541 | Msa0964230:CDS | 30.0% |
TAATCTATGATTCCATTGAG+AGG | + | chr6_3:90619730-90619749 | None:intergenic | 30.0% | |
!! | ACTAGTTTCTTTTTGCAGAA+AGG | - | chr6_3:90619757-90619776 | Msa0964230:intron | 30.0% |
ATATATACCTCTCTTAGCTT+TGG | + | chr6_3:90619991-90620010 | None:intergenic | 30.0% | |
TTAGCATAAAGATAGACTCT+AGG | + | chr6_3:90620057-90620076 | None:intergenic | 30.0% | |
ATGCTAATTGCACAAGTTAA+AGG | + | chr6_3:90620419-90620438 | None:intergenic | 30.0% | |
TTCAGAAGAATGGTAAATTG+AGG | + | chr6_3:90620626-90620645 | None:intergenic | 30.0% | |
GTGCCATACCATTTATAAAT+TGG | - | chr6_3:90620834-90620853 | Msa0964230:intron | 30.0% | |
CTGCCAATTTATAAATGGTA+TGG | + | chr6_3:90620840-90620859 | None:intergenic | 30.0% | |
! | TAGCTCTGCCAATTTATAAA+TGG | + | chr6_3:90620845-90620864 | None:intergenic | 30.0% |
AGCTATATAGACAAATTGGT+GGG | - | chr6_3:90620860-90620879 | Msa0964230:CDS | 30.0% | |
!! | GATGACTTAGTTTTTGAACT+CGG | - | chr6_3:90621178-90621197 | Msa0964230:intron | 30.0% |
!!! | CATGAATTTGTTTTTTGCAC+AGG | + | chr6_3:90621326-90621345 | None:intergenic | 30.0% |
AATTATAGGTGATCAAACTG+TGG | - | chr6_3:90621527-90621546 | Msa0964230:intron | 30.0% | |
AAAGGAAATCCATTTGCATT+TGG | + | chr6_3:90621714-90621733 | None:intergenic | 30.0% | |
!! | AATGCAAATGGATTTCCTTT+TGG | - | chr6_3:90621714-90621733 | Msa0964230:intron | 30.0% |
TTCGACAACTCAGATTTATT+TGG | - | chr6_3:90621897-90621916 | Msa0964230:intron | 30.0% | |
AGATCTAACTGTGTGAAAAA+TGG | + | chr6_3:90621923-90621942 | None:intergenic | 30.0% | |
! | TGTAATAGATTTTGTCCATC+CGG | + | chr6_3:90621963-90621982 | None:intergenic | 30.0% |
TATATACATTTCCTTGCAAG+TGG | - | chr6_3:90622106-90622125 | Msa0964230:five_prime_UTR | 30.0% | |
TGACTTTGACACACTATTTA+GGG | + | chr6_3:90622137-90622156 | None:intergenic | 30.0% | |
TTGACTTTGACACACTATTT+AGG | + | chr6_3:90622138-90622157 | None:intergenic | 30.0% | |
ATAGTGTGTCAAAGTCAAAA+TGG | - | chr6_3:90622140-90622159 | Msa0964230:five_prime_UTR | 30.0% | |
GATTTCATTCGTTTGTCGTT+TGG | + | chr6_3:90616197-90616216 | None:intergenic | 35.0% | |
CAGTTAATGTGCAAAACATG+CGG | - | chr6_3:90616403-90616422 | Msa0964230:three_prime_UTR | 35.0% | |
! | CAAAACATGCGGAACTTTTT+AGG | - | chr6_3:90616414-90616433 | Msa0964230:exon | 35.0% |
! | GGAACCTTTTCTTAAAAGAG+TGG | - | chr6_3:90616443-90616462 | Msa0964230:CDS | 35.0% |
!! | TGTGGTTAACTTGTTTCTCA+TGG | - | chr6_3:90616567-90616586 | Msa0964230:CDS | 35.0% |
!! | GTGGTTAACTTGTTTCTCAT+GGG | - | chr6_3:90616568-90616587 | Msa0964230:CDS | 35.0% |
!! | TAACTTGTTTCTCATGGGTT+AGG | - | chr6_3:90616573-90616592 | Msa0964230:CDS | 35.0% |
! | AACTTGTTTCTCATGGGTTA+GGG | - | chr6_3:90616574-90616593 | Msa0964230:CDS | 35.0% |
AAGATGGTCCAATGTTAAAC+CGG | - | chr6_3:90616929-90616948 | Msa0964230:intron | 35.0% | |
ATATGGATCCGGTTTAACAT+TGG | + | chr6_3:90616940-90616959 | None:intergenic | 35.0% | |
TTGTGGTATGAATAGCTATG+CGG | + | chr6_3:90617081-90617100 | None:intergenic | 35.0% | |
!!! | TAGGTGAAGTTGGTTTTTTG+TGG | + | chr6_3:90617098-90617117 | None:intergenic | 35.0% |
TAATGAAGGTGACCTATTGA+TGG | + | chr6_3:90617299-90617318 | None:intergenic | 35.0% | |
ATTAAGAATCCAAGCACCAA+GGG | - | chr6_3:90617315-90617334 | Msa0964230:CDS | 35.0% | |
TTGAATGAGAGTTGTAAGGT+TGG | + | chr6_3:90617349-90617368 | None:intergenic | 35.0% | |
AACTCTAACTATCTAAGGGT+TGG | + | chr6_3:90617435-90617454 | None:intergenic | 35.0% | |
GTTGAAACTTGAAATAGTGC+CGG | - | chr6_3:90617467-90617486 | Msa0964230:intron | 35.0% | |
CGGAAGTTTAGAGATAGAAA+AGG | - | chr6_3:90617487-90617506 | Msa0964230:intron | 35.0% | |
GTTAGCGACTAAATTAGAGA+TGG | + | chr6_3:90617519-90617538 | None:intergenic | 35.0% | |
! | ATGCTTTTAAATAGGCTAGC+AGG | - | chr6_3:90618346-90618365 | Msa0964230:CDS | 35.0% |
CTGTCCTGTCAAAAGATTTA+AGG | + | chr6_3:90618446-90618465 | None:intergenic | 35.0% | |
TTGGAAAGAAGTTATCTCAG+TGG | + | chr6_3:90618613-90618632 | None:intergenic | 35.0% | |
AACTTCTTTCCAACTTTCAC+AGG | - | chr6_3:90618620-90618639 | Msa0964230:intron | 35.0% | |
ATTCTACTACCTGTGAAAGT+TGG | + | chr6_3:90618632-90618651 | None:intergenic | 35.0% | |
TCAACAAGACTTATGCAGAT+AGG | + | chr6_3:90618674-90618693 | None:intergenic | 35.0% | |
!! | GAAGACTTGTTGGAACAATT+TGG | + | chr6_3:90618712-90618731 | None:intergenic | 35.0% |
!! | ATCTCTAGCTTTATAGGGTA+AGG | + | chr6_3:90618734-90618753 | None:intergenic | 35.0% |
CTAGAGATTGTTGTACTTGA+TGG | - | chr6_3:90618746-90618765 | Msa0964230:intron | 35.0% | |
! | CAATTCTCGTTTTCATCATG+TGG | + | chr6_3:90618779-90618798 | None:intergenic | 35.0% |
CACATGATGAAAACGAGAAT+TGG | - | chr6_3:90618777-90618796 | Msa0964230:intron | 35.0% | |
TACATAGTGAAGGAAAGAAC+TGG | - | chr6_3:90618821-90618840 | Msa0964230:intron | 35.0% | |
ACATAGTGAAGGAAAGAACT+GGG | - | chr6_3:90618822-90618841 | Msa0964230:intron | 35.0% | |
GAATTGAACCTTACTATGAG+AGG | - | chr6_3:90618866-90618885 | Msa0964230:intron | 35.0% | |
AGTTCACAGATAATTCTAGC+TGG | - | chr6_3:90618915-90618934 | Msa0964230:intron | 35.0% | |
! | GAAGTTTAGAGTTGCAGTTA+AGG | - | chr6_3:90618949-90618968 | Msa0964230:intron | 35.0% |
! | ATGGGAGTAATCAAAGTGTT+AGG | - | chr6_3:90618978-90618997 | Msa0964230:intron | 35.0% |
! | CAAAGTGTTAGGATTCAAGA+AGG | - | chr6_3:90618989-90619008 | Msa0964230:intron | 35.0% |
!! | TTTGTTGTTAAGGATCATCG+TGG | - | chr6_3:90619025-90619044 | Msa0964230:intron | 35.0% |
! | TTGTTGCGACACATTTTTGT+AGG | + | chr6_3:90619646-90619665 | None:intergenic | 35.0% |
! | TAAGCATTTTTGCCTCTCAA+TGG | - | chr6_3:90619715-90619734 | Msa0964230:intron | 35.0% |
ACCACAAAATGATGGCTAAA+GGG | - | chr6_3:90619920-90619939 | Msa0964230:intron | 35.0% | |
! | AAGATAGACTCTAGGAAATG+TGG | + | chr6_3:90620049-90620068 | None:intergenic | 35.0% |
! | TGAAATCAGATTTTGGGCAT+GGG | - | chr6_3:90620518-90620537 | Msa0964230:intron | 35.0% |
GCATATTGGATTCAGAAGAA+TGG | + | chr6_3:90620636-90620655 | None:intergenic | 35.0% | |
GTACTTGAGCCAAATGAATA+AGG | - | chr6_3:90620703-90620722 | Msa0964230:intron | 35.0% | |
GCAGAGCTATATAGACAAAT+TGG | - | chr6_3:90620856-90620875 | Msa0964230:CDS | 35.0% | |
GAGCTATATAGACAAATTGG+TGG | - | chr6_3:90620859-90620878 | Msa0964230:CDS | 35.0% | |
ATACACTAAATGGCATGAGT+TGG | - | chr6_3:90620889-90620908 | Msa0964230:CDS | 35.0% | |
! | ATGAGTTGGAGGAAATTGAT+GGG | - | chr6_3:90620903-90620922 | Msa0964230:CDS | 35.0% |
! | AACATTGCTTTGTTAACCCA+AGG | - | chr6_3:90620938-90620957 | Msa0964230:CDS | 35.0% |
ATGTCAACTACGTGAATACA+TGG | + | chr6_3:90621133-90621152 | None:intergenic | 35.0% | |
! | GATATTGGTCATATCGGTTA+AGG | + | chr6_3:90621271-90621290 | None:intergenic | 35.0% |
!! | TTTTTGCACAGGTTGAATTG+CGG | + | chr6_3:90621315-90621334 | None:intergenic | 35.0% |
ACCAAGCAATAATGCACAAA+TGG | - | chr6_3:90621647-90621666 | Msa0964230:intron | 35.0% | |
GACTTTGACACACTATTTAG+GGG | + | chr6_3:90622136-90622155 | None:intergenic | 35.0% | |
AGTGCATACGAAGCAAAAGA+AGG | + | chr6_3:90616227-90616246 | None:intergenic | 40.0% | |
GCTTCATAGTTAGGTGAAGT+TGG | + | chr6_3:90617108-90617127 | None:intergenic | 40.0% | |
ATTTGGTTAGGTGAGTGAAG+AGG | - | chr6_3:90617240-90617259 | Msa0964230:intron | 40.0% | |
GGTGCTTGGATTCTTAATGA+AGG | + | chr6_3:90617313-90617332 | None:intergenic | 40.0% | |
CATTAAGAATCCAAGCACCA+AGG | - | chr6_3:90617314-90617333 | Msa0964230:CDS | 40.0% | |
CATACCTGTGAAAATTGGGA+GGG | + | chr6_3:90617383-90617402 | None:intergenic | 40.0% | |
TCATACCTGTGAAAATTGGG+AGG | + | chr6_3:90617384-90617403 | None:intergenic | 40.0% | |
TATGTCTCTATAGACCGATC+TGG | + | chr6_3:90617561-90617580 | None:intergenic | 40.0% | |
CATCAGACTTTCAAGAGATC+AGG | - | chr6_3:90618372-90618391 | Msa0964230:CDS | 40.0% | |
! | TAAGGCTTAAGCATTGTCAG+CGG | + | chr6_3:90618428-90618447 | None:intergenic | 40.0% |
! | TCTTTTGACAGGACAGACTT+AGG | - | chr6_3:90618450-90618469 | Msa0964230:intron | 40.0% |
AGTAAGGGTGGGAATAGATT+AGG | + | chr6_3:90618496-90618515 | None:intergenic | 40.0% | |
ACTCTACGATTAGTAAGGGT+GGG | + | chr6_3:90618507-90618526 | None:intergenic | 40.0% | |
AACTCTACGATTAGTAAGGG+TGG | + | chr6_3:90618508-90618527 | None:intergenic | 40.0% | |
GGCAACTCTACGATTAGTAA+GGG | + | chr6_3:90618511-90618530 | None:intergenic | 40.0% | |
TGGCAACTCTACGATTAGTA+AGG | + | chr6_3:90618512-90618531 | None:intergenic | 40.0% | |
ATAGGGTAAGGAAGACTTGT+TGG | + | chr6_3:90618722-90618741 | None:intergenic | 40.0% | |
TTGAACCTTACTATGAGAGG+TGG | - | chr6_3:90618869-90618888 | Msa0964230:intron | 40.0% | |
CAATTCCACCTCTCATAGTA+AGG | + | chr6_3:90618877-90618896 | None:intergenic | 40.0% | |
! | ATTCTAGCTGGATAAAGTGC+AGG | - | chr6_3:90618927-90618946 | Msa0964230:intron | 40.0% |
TTGCAGTTAAGGTGAGTCAT+GGG | - | chr6_3:90618960-90618979 | Msa0964230:intron | 40.0% | |
!! | GACTGAGGCATTTGTTGTTA+AGG | - | chr6_3:90619015-90619034 | Msa0964230:intron | 40.0% |
AAACATCATCCACCAATGCT+TGG | - | chr6_3:90619850-90619869 | Msa0964230:intron | 40.0% | |
CATCTTTCCCTATCTTCTCT+AGG | + | chr6_3:90619891-90619910 | None:intergenic | 40.0% | |
CTAGAGAAGATAGGGAAAGA+TGG | - | chr6_3:90619889-90619908 | Msa0964230:intron | 40.0% | |
AGCTTTCCACCACAAAATGA+TGG | - | chr6_3:90619912-90619931 | Msa0964230:intron | 40.0% | |
! | CTTTAGCCATCATTTTGTGG+TGG | + | chr6_3:90619921-90619940 | None:intergenic | 40.0% |
CACCACAAAATGATGGCTAA+AGG | - | chr6_3:90619919-90619938 | Msa0964230:intron | 40.0% | |
! | TCCCTTTAGCCATCATTTTG+TGG | + | chr6_3:90619924-90619943 | None:intergenic | 40.0% |
TGATACTCCAAAGCTAAGAG+AGG | - | chr6_3:90619981-90620000 | Msa0964230:intron | 40.0% | |
! | CTGAAATCAGATTTTGGGCA+TGG | - | chr6_3:90620517-90620536 | Msa0964230:intron | 40.0% |
! | GAAATCAGATTTTGGGCATG+GGG | - | chr6_3:90620519-90620538 | Msa0964230:intron | 40.0% |
! | CATGCAATGACTTGTGACAT+GGG | - | chr6_3:90620575-90620594 | Msa0964230:intron | 40.0% |
! | ATGCAATGACTTGTGACATG+GGG | - | chr6_3:90620576-90620595 | Msa0964230:intron | 40.0% |
GAATGGTAAATTGAGGTCCA+CGG | + | chr6_3:90620619-90620638 | None:intergenic | 40.0% | |
TGTGAGTCTTGAGTAGTAGA+TGG | + | chr6_3:90620742-90620761 | None:intergenic | 40.0% | |
! | TGGGAGAAGCATACACTAAA+TGG | - | chr6_3:90620879-90620898 | Msa0964230:CDS | 40.0% |
! | CATGAGTTGGAGGAAATTGA+TGG | - | chr6_3:90620902-90620921 | Msa0964230:CDS | 40.0% |
! | TGAGTTGGAGGAAATTGATG+GGG | - | chr6_3:90620904-90620923 | Msa0964230:CDS | 40.0% |
ACTGTTGCTGGATGATTGTT+TGG | + | chr6_3:90621561-90621580 | None:intergenic | 40.0% | |
TATGTTGTTGCTACTGTTGC+TGG | + | chr6_3:90621573-90621592 | None:intergenic | 40.0% | |
GCCATTTGTGCATTATTGCT+TGG | + | chr6_3:90621651-90621670 | None:intergenic | 40.0% | |
!! | TGCATTTGGTGTTGTGGTAT+AGG | + | chr6_3:90621700-90621719 | None:intergenic | 40.0% |
ACCACAACACCAAATGCAAA+TGG | - | chr6_3:90621702-90621721 | Msa0964230:intron | 40.0% | |
!! | TCCATTTGCATTTGGTGTTG+TGG | + | chr6_3:90621706-90621725 | None:intergenic | 40.0% |
TGAACCCATTAATGTCCCTA+GGG | + | chr6_3:90621788-90621807 | None:intergenic | 40.0% | |
TTACATGAAGCAGTTACAGC+AGG | + | chr6_3:90621850-90621869 | None:intergenic | 40.0% | |
!! | GCGGAACTTTTTAGGAGCTT+TGG | - | chr6_3:90616422-90616441 | Msa0964230:exon | 45.0% |
CGCATCTGTGTCAAATGTCA+TGG | + | chr6_3:90616488-90616507 | None:intergenic | 45.0% | |
!! | TGTTTCTCATGGGTTAGGGT+TGG | - | chr6_3:90616578-90616597 | Msa0964230:CDS | 45.0% |
!! | GTTTCTCATGGGTTAGGGTT+GGG | - | chr6_3:90616579-90616598 | Msa0964230:CDS | 45.0% |
!! | TTTCTCATGGGTTAGGGTTG+GGG | - | chr6_3:90616580-90616599 | Msa0964230:CDS | 45.0% |
TATGCGGAGACTACTGCAAT+TGG | + | chr6_3:90617065-90617084 | None:intergenic | 45.0% | |
GAAGAGGTGGATAGAGCAAT+TGG | - | chr6_3:90617256-90617275 | Msa0964230:intron | 45.0% | |
GCTTTCCACCTTCCATCAAT+AGG | - | chr6_3:90617284-90617303 | Msa0964230:intron | 45.0% | |
GAAGGTGACCTATTGATGGA+AGG | + | chr6_3:90617295-90617314 | None:intergenic | 45.0% | |
! | AAGGTTGGTTGTTGATCCCT+TGG | + | chr6_3:90617334-90617353 | None:intergenic | 45.0% |
! | CTTTCCCTCCCAATTTTCAC+AGG | - | chr6_3:90617376-90617395 | Msa0964230:intron | 45.0% |
TAGTCGCTAACTGTTAGGGA+TGG | - | chr6_3:90617528-90617547 | Msa0964230:CDS | 45.0% | |
AGTCGCTAACTGTTAGGGAT+GGG | - | chr6_3:90617529-90617548 | Msa0964230:CDS | 45.0% | |
! | GTTGGCCTGATAGGATTAAG+AGG | + | chr6_3:90617698-90617717 | None:intergenic | 45.0% |
AGGTCGAGTTAGACTTTGCA+AGG | + | chr6_3:90618476-90618495 | None:intergenic | 45.0% | |
AGTAGAATACTCGACGCTGA+AGG | - | chr6_3:90618644-90618663 | Msa0964230:intron | 45.0% | |
GGGAAGAGACCATTACTATC+TGG | - | chr6_3:90618842-90618861 | Msa0964230:intron | 45.0% | |
AGAGGTGGAATTGCACCAAT+AGG | - | chr6_3:90618884-90618903 | Msa0964230:intron | 45.0% | |
GAGGTGGAATTGCACCAATA+GGG | - | chr6_3:90618885-90618904 | Msa0964230:intron | 45.0% | |
AGGTGGAATTGCACCAATAG+GGG | - | chr6_3:90618886-90618905 | Msa0964230:intron | 45.0% | |
GTGAACTCTATGTCCCCTAT+TGG | + | chr6_3:90618902-90618921 | None:intergenic | 45.0% | |
GTTGCAGTTAAGGTGAGTCA+TGG | - | chr6_3:90618959-90618978 | Msa0964230:intron | 45.0% | |
! | GATTCAAGAAGGCATGACTG+AGG | - | chr6_3:90619000-90619019 | Msa0964230:intron | 45.0% |
TGGGGATGTCTGATAGAATG+TGG | - | chr6_3:90620537-90620556 | Msa0964230:intron | 45.0% | |
! | GCATGCAATGACTTGTGACA+TGG | - | chr6_3:90620574-90620593 | Msa0964230:intron | 45.0% |
ACATGGGGAGCAAGATCTAT+AGG | - | chr6_3:90620591-90620610 | Msa0964230:intron | 45.0% | |
! | AGCAAGATCTATAGGTACCG+TGG | - | chr6_3:90620599-90620618 | Msa0964230:intron | 45.0% |
! | CACTAAATGGCATGAGTTGG+AGG | - | chr6_3:90620892-90620911 | Msa0964230:CDS | 45.0% |
CCACTACAACATGTCTTGTG+TGG | + | chr6_3:90621102-90621121 | None:intergenic | 45.0% | |
CCACACAAGACATGTTGTAG+TGG | - | chr6_3:90621099-90621118 | Msa0964230:intron | 45.0% | |
ACAAATGGCTAGCAGTGAGT+GGG | - | chr6_3:90621662-90621681 | Msa0964230:intron | 45.0% | |
!!! | GGATTTCCTTTTGGCTTCAC+AGG | - | chr6_3:90621723-90621742 | Msa0964230:intron | 45.0% |
TTCACAGGCTCACAATCAGA+TGG | - | chr6_3:90621738-90621757 | Msa0964230:intron | 45.0% | |
TCACAGGCTCACAATCAGAT+GGG | - | chr6_3:90621739-90621758 | Msa0964230:intron | 45.0% | |
GTGAACCCATTAATGTCCCT+AGG | + | chr6_3:90621789-90621808 | None:intergenic | 45.0% | |
!! | GGGACATTAATGGGTTCACA+AGG | - | chr6_3:90621790-90621809 | Msa0964230:CDS | 45.0% |
TTGTCCATCCGGTCTTCAAT+CGG | + | chr6_3:90621952-90621971 | None:intergenic | 45.0% | |
!!! | ATTCATTTTTTTATTAAAAA+TGG | + | chr6_3:90616861-90616880 | None:intergenic | 5.0% |
!!! | ATATTTTATTAAAAATAAGA+TGG | - | chr6_3:90616913-90616932 | Msa0964230:intron | 5.0% |
!! | AATCTAATATATTTAATTAA+AGG | + | chr6_3:90620445-90620464 | None:intergenic | 5.0% |
TGGTTAGGTGAGTGAAGAGG+TGG | - | chr6_3:90617243-90617262 | Msa0964230:intron | 50.0% | |
GGTGACCTATTGATGGAAGG+TGG | + | chr6_3:90617292-90617311 | None:intergenic | 50.0% | |
!! | GTTGTTGATCCCTTGGTGCT+TGG | + | chr6_3:90617327-90617346 | None:intergenic | 50.0% |
GGGATGGGAATAAGCCAGAT+CGG | - | chr6_3:90617544-90617563 | Msa0964230:CDS | 50.0% | |
!! | CCTAAGTAGGTTGGCCTGAT+AGG | + | chr6_3:90617707-90617726 | None:intergenic | 50.0% |
CCTATCAGGCCAACCTACTT+AGG | - | chr6_3:90617704-90617723 | Msa0964230:intron | 50.0% | |
CATTGTCAGCGGCCTTTCAT+AGG | + | chr6_3:90618417-90618436 | None:intergenic | 50.0% | |
!! | ACATCATCGCCAAGCATTGG+TGG | + | chr6_3:90619862-90619881 | None:intergenic | 50.0% |
CACACATCATCGCCAAGCAT+TGG | + | chr6_3:90619865-90619884 | None:intergenic | 50.0% | |
CAATGCTTGGCGATGATGTG+TGG | - | chr6_3:90619863-90619882 | Msa0964230:intron | 50.0% | |
TGTGGCGCCTAGAGAAGATA+GGG | - | chr6_3:90619881-90619900 | Msa0964230:intron | 50.0% | |
TTGGCTCAAGTACTCTCTGC+TGG | + | chr6_3:90620696-90620715 | None:intergenic | 50.0% | |
! | TGCACAGGTTGAATTGCGGT+CGG | + | chr6_3:90621311-90621330 | None:intergenic | 50.0% |
CACAAATGGCTAGCAGTGAG+TGG | - | chr6_3:90621661-90621680 | Msa0964230:intron | 50.0% | |
TGTGAGCCTGTGAAGCCAAA+AGG | + | chr6_3:90621732-90621751 | None:intergenic | 50.0% | |
CACAGGCTCACAATCAGATG+GGG | - | chr6_3:90621740-90621759 | Msa0964230:intron | 50.0% | |
! | GACATGACACCTTCAGGTTC+AGG | - | chr6_3:90621762-90621781 | Msa0964230:intron | 50.0% |
TCAGGCCCTAGGGACATTAA+TGG | - | chr6_3:90621780-90621799 | Msa0964230:intron | 50.0% | |
CAGGCCCTAGGGACATTAAT+GGG | - | chr6_3:90621781-90621800 | Msa0964230:intron | 50.0% | |
! | TTAGGGGTACACCACTTGCA+AGG | + | chr6_3:90622120-90622139 | None:intergenic | 50.0% |
!! | TGGCTCGGTCTGTCTGTCAT+AGG | + | chr6_3:90617592-90617611 | None:intergenic | 55.0% |
GTGTGGCGCCTAGAGAAGAT+AGG | - | chr6_3:90619880-90619899 | Msa0964230:intron | 55.0% | |
GATGGGGACATGACACCTTC+AGG | - | chr6_3:90621756-90621775 | Msa0964230:intron | 55.0% | |
! | ACCTTCAGGTTCAGGCCCTA+GGG | - | chr6_3:90621770-90621789 | Msa0964230:intron | 55.0% |
! | CTCAGCCACCGATTGAAGAC+CGG | - | chr6_3:90621941-90621960 | Msa0964230:intron | 55.0% |
TCCATCCGGTCTTCAATCGG+TGG | + | chr6_3:90621949-90621968 | None:intergenic | 55.0% | |
!! | CTCATGGGTTAGGGTTGGGG+TGG | - | chr6_3:90616583-90616602 | Msa0964230:CDS | 60.0% |
! | CACCTTCAGGTTCAGGCCCT+AGG | - | chr6_3:90621769-90621788 | Msa0964230:intron | 60.0% |
TCCCTAGGGCCTGAACCTGA+AGG | + | chr6_3:90621774-90621793 | None:intergenic | 60.0% | |
! | GCCACCGATTGAAGACCGGA+TGG | - | chr6_3:90621945-90621964 | Msa0964230:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 90616071 | 90622176 | 90616071 | ID=Msa0964230;Name=Msa0964230 |
chr6_3 | mRNA | 90616071 | 90622176 | 90616071 | ID=Msa0964230-mRNA-1;Parent=Msa0964230;Name=Msa0964230-mRNA-1;_AED=0.16;_eAED=0.16;_QI=72|1|1|1|0.87|0.77|9|301|491 |
chr6_3 | exon | 90616071 | 90616122 | 90616071 | ID=Msa0964230-mRNA-1:exon:16294;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90616177 | 90616712 | 90616177 | ID=Msa0964230-mRNA-1:exon:16293;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90617288 | 90617387 | 90617288 | ID=Msa0964230-mRNA-1:exon:16292;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90617523 | 90617720 | 90617523 | ID=Msa0964230-mRNA-1:exon:16291;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90618245 | 90618405 | 90618245 | ID=Msa0964230-mRNA-1:exon:16290;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90619195 | 90619605 | 90619195 | ID=Msa0964230-mRNA-1:exon:16289;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90620850 | 90620997 | 90620850 | ID=Msa0964230-mRNA-1:exon:16288;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90621783 | 90621858 | 90621783 | ID=Msa0964230-mRNA-1:exon:16287;Parent=Msa0964230-mRNA-1 |
chr6_3 | exon | 90622010 | 90622176 | 90622010 | ID=Msa0964230-mRNA-1:exon:16286;Parent=Msa0964230-mRNA-1 |
chr6_3 | five_prime_UTR | 90622105 | 90622176 | 90622105 | ID=Msa0964230-mRNA-1:five_prime_utr;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90622010 | 90622104 | 90622010 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90621783 | 90621858 | 90621783 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90620850 | 90620997 | 90620850 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90619195 | 90619605 | 90619195 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90618245 | 90618405 | 90618245 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90617523 | 90617720 | 90617523 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90617288 | 90617387 | 90617288 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | CDS | 90616426 | 90616712 | 90616426 | ID=Msa0964230-mRNA-1:cds;Parent=Msa0964230-mRNA-1 |
chr6_3 | three_prime_UTR | 90616177 | 90616425 | 90616177 | ID=Msa0964230-mRNA-1:three_prime_utr;Parent=Msa0964230-mRNA-1 |
chr6_3 | three_prime_UTR | 90616071 | 90616122 | 90616071 | ID=Msa0964230-mRNA-1:three_prime_utr;Parent=Msa0964230-mRNA-1 |
Gene Sequence |
Protein sequence |