AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0490380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0490380 MtrunA17_Chr3g0118541 96.602 618 21 0 1 618 11 628 0.0 1250
Msa0490380 MtrunA17_Chr3g0118251 51.786 616 276 11 12 616 13 618 0.0 598
Msa0490380 MtrunA17_Chr8g0384621 29.804 510 287 23 119 593 127 600 8.55e-50 183
Msa0490380 MtrunA17_Chr3g0118571 85.106 47 7 0 1 47 1 47 8.42e-22 89.0
Msa0490380 MtrunA17_Chr3g0107671 25.424 354 208 14 277 597 209 539 3.14e-20 94.7
Msa0490380 MtrunA17_Chr6g0451531 26.243 362 199 15 276 598 210 542 4.38e-20 94.4
Msa0490380 MtrunA17_Chr6g0451541 25.137 366 197 16 276 597 210 542 7.58e-17 84.0
Msa0490380 MtrunA17_Chr6g0451511 22.616 367 203 15 277 597 209 540 3.76e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0490380 AT3G48090.1 41.521 631 308 16 11 608 8 610 3.97e-151 450
Msa0490380 AT3G48080.1 40.952 630 311 17 11 605 8 611 5.68e-145 434
Msa0490380 AT3G48090.2 44.530 521 240 12 117 608 2 502 3.89e-137 410
Msa0490380 AT3G52430.1 27.221 349 216 12 279 605 188 520 4.22e-29 122
Msa0490380 AT3G52430.1 40.260 77 40 2 124 200 112 182 6.73e-11 65.5
Msa0490380 AT5G14930.2 22.750 400 227 16 228 598 162 508 4.89e-13 72.4

Find 165 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCCATGTTTCTATATT+TGG 0.081103 3_4:-11921358 None:intergenic
TGGCCATTCTAGCAACATTT+TGG 0.165541 3_4:+11922688 Msa0490380:CDS
GCACTCTTCAGGGGCTGTTT+TGG 0.210683 3_4:+11922668 Msa0490380:CDS
CTTCAAATGACGGTGATAAT+TGG 0.226494 3_4:-11924164 None:intergenic
CAAGTCACACTGTCTCTTAT+TGG 0.237776 3_4:-11922975 None:intergenic
GGATTTGCTCTGGCTTTAAA+TGG 0.248977 3_4:+11924662 Msa0490380:three_prime_UTR
CTTGTGCTGAATTTGGATTT+TGG 0.262348 3_4:-11922736 None:intergenic
GATTCTGTGATTTCTGCTTT+TGG 0.262651 3_4:-11924274 None:intergenic
GTGTTTACAGGGCACTCTTC+AGG 0.263760 3_4:+11922657 Msa0490380:CDS
CCATGTTGCTTGTAATCTAA+TGG 0.268851 3_4:+11923043 Msa0490380:CDS
GACTTGTGCTTGCAGGAGTA+TGG 0.270068 3_4:+11924026 Msa0490380:CDS
GTTCGTATATATAAGGATAT+TGG 0.274050 3_4:-11921312 None:intergenic
TATCTTGTTATAAGCTTTCC+TGG 0.297959 3_4:+11921516 Msa0490380:CDS
TCACCCATGTGTGTCACTTT+TGG 0.298374 3_4:+11922759 Msa0490380:CDS
CTGCAATTGTACTACTACTT+TGG 0.300764 3_4:+11924776 Msa0490380:three_prime_UTR
TACTTGCTTCCCTTCTGTTA+TGG 0.306603 3_4:-11922634 None:intergenic
TGGCTTAGTGGCGTCGGCTT+GGG 0.310502 3_4:+11924566 Msa0490380:three_prime_UTR
TATTGCTCAGCTAAGAGATT+TGG 0.321661 3_4:+11923211 Msa0490380:CDS
ATCTGTACTCTTGGATGCTT+AGG 0.322956 3_4:+11924931 Msa0490380:three_prime_UTR
TGGGTGACTTGTGCTGAATT+TGG 0.333001 3_4:-11922743 None:intergenic
TCAAACACTTCTGTAATATA+AGG 0.336613 3_4:-11921471 None:intergenic
TTGTCATGTTCGTATATATA+AGG 0.339026 3_4:-11921319 None:intergenic
AAATCACAGAATCTACCTTT+TGG 0.342438 3_4:+11924284 Msa0490380:CDS
GGCCTAGCCTTGTTCATGTA+AGG 0.342464 3_4:-11924202 None:intergenic
ACAAGATATTCTGTTAAGTC+TGG 0.343741 3_4:-11921501 None:intergenic
AACATGGGAGGAGGATTAGT+TGG 0.353457 3_4:+11921369 Msa0490380:exon
CGTCCCAAGCATGAGGGATT+TGG 0.356445 3_4:+11923904 Msa0490380:CDS
GGGAAGCAAGTAGTGTTTAC+AGG 0.360053 3_4:+11922645 Msa0490380:CDS
AGCCTATGAAGCTGAATTAG+AGG 0.360951 3_4:+11923277 Msa0490380:CDS
CAAAGTAGTAGTACAATTGC+AGG 0.363528 3_4:-11924775 None:intergenic
TTGGCTTAGTGGCGTCGGCT+TGG 0.365867 3_4:+11924565 Msa0490380:three_prime_UTR
ACGTTTGCTTGGAAATCCTT+TGG 0.368793 3_4:-11923998 None:intergenic
ATCCTACATTCATAAAGTTA+TGG 0.375298 3_4:+11924446 Msa0490380:CDS
TGAGTTAAGGAGTTGTTGTT+AGG 0.376501 3_4:-11922948 None:intergenic
TGAGTGTACCTATACCTCTT+TGG 0.384599 3_4:-11924223 None:intergenic
GTGAAGAGACTTGTGCTTGC+AGG 0.386249 3_4:+11924019 Msa0490380:CDS
CAAGTCTCTTCACGTTTGCT+TGG 0.387820 3_4:-11924009 None:intergenic
GACGATCTTCCTTTGTCTGC+TGG 0.394824 3_4:+11923341 Msa0490380:CDS
TTATAAGCTTTCCTGGATCA+TGG 0.397999 3_4:+11921523 Msa0490380:CDS
TGTTTACAGGGCACTCTTCA+GGG 0.398661 3_4:+11922658 Msa0490380:CDS
AATCATTGTATCTGTACTCT+TGG 0.399154 3_4:+11924922 Msa0490380:three_prime_UTR
TGACCAGTCCAAGGCTATCC+AGG 0.399798 3_4:-11923394 None:intergenic
ACCCACACAGGTTGGCTTAG+TGG 0.412067 3_4:+11924554 Msa0490380:three_prime_UTR
TCCTACATTCATAAAGTTAT+GGG 0.412183 3_4:+11924447 Msa0490380:CDS
CTCCTCTAATTCAGCTTCAT+AGG 0.412451 3_4:-11923279 None:intergenic
TTTAAATGGCCTCTCGCTAG+TGG 0.414562 3_4:+11924676 Msa0490380:three_prime_UTR
CATGTTGCTTGTAATCTAAT+GGG 0.415589 3_4:+11923044 Msa0490380:CDS
AACTCAAAATCTAAAAGAAA+AGG 0.423619 3_4:-11924979 None:intergenic
TCTGTACTCTTGGATGCTTA+GGG 0.424061 3_4:+11924932 Msa0490380:three_prime_UTR
GGGAAGCACAAATTTGTTGT+TGG 0.425534 3_4:+11923064 Msa0490380:CDS
GAACATGTGGCTTGAATAAG+AGG 0.427523 3_4:-11924802 None:intergenic
TTAAGTCCGTATAGACCCTT+TGG 0.433280 3_4:+11923110 Msa0490380:CDS
GACATTAGGAGGATTTGAAC+TGG 0.433989 3_4:-11924614 None:intergenic
TGCCCAAAATGTTGCTAGAA+TGG 0.436813 3_4:-11922691 None:intergenic
CGACTATGCCTTCGAGCAGC+TGG 0.439081 3_4:+11923818 Msa0490380:CDS
TAAGTCCCAAAGGGTCTATA+CGG 0.439330 3_4:-11923116 None:intergenic
GGACCCTTCTCGTAGATATA+AGG 0.442111 3_4:+11924699 Msa0490380:three_prime_UTR
TCTTATTGGATCTTGAGTTA+AGG 0.444425 3_4:-11922961 None:intergenic
CTGTTAAAGAATAAATCAAT+TGG 0.444789 3_4:+11924521 Msa0490380:exon
TTTCATTTGCTTAAAAGTGT+TGG 0.452737 3_4:+11921606 Msa0490380:CDS
AGGCTAGGCCAAAGAGGTAT+AGG 0.454952 3_4:+11924215 Msa0490380:CDS
TTCTTCCACCTCAGCCCAAA+AGG 0.454957 3_4:-11924299 None:intergenic
AAACTATATTAGAATATAGT+TGG 0.459193 3_4:+11925007 Msa0490380:three_prime_UTR
AGTAAAGAGAGTGGAGATGC+AGG 0.460370 3_4:-11924500 None:intergenic
TACCGACATTGCAGCCGCCC+TGG 0.465765 3_4:+11923376 Msa0490380:CDS
CTTTCCTTGATATCTTCAAA+AGG 0.465824 3_4:-11924349 None:intergenic
TTAAATGAATAAATTCAATT+CGG 0.466865 3_4:+11925062 Msa0490380:three_prime_UTR
AGCCAGAGCAAATCCTTGTA+TGG 0.469491 3_4:-11924654 None:intergenic
CTTCCTTTGTCTGCTGGTGA+TGG 0.469626 3_4:+11923347 Msa0490380:CDS
GGAGTCAAAAGCTGAAGAAC+AGG 0.474277 3_4:-11922927 None:intergenic
ATCCTTTGAGAACACATCCT+TGG 0.477252 3_4:-11924425 None:intergenic
CTTCCAAATCCCTCATGCTT+GGG 0.479202 3_4:-11923907 None:intergenic
TGATGCCTTCAAGGTGCAAA+AGG 0.480497 3_4:+11923973 Msa0490380:CDS
GATGGTTGGAGCATGCAAAC+AGG 0.482208 3_4:+11924248 Msa0490380:CDS
TCCCATAACTTTATGAATGT+AGG 0.484731 3_4:-11924448 None:intergenic
GTCCATACAAGGATTTGCTC+TGG 0.485213 3_4:+11924652 Msa0490380:three_prime_UTR
ATGACTACTTCAACACTCCT+TGG 0.485237 3_4:+11924734 Msa0490380:three_prime_UTR
TTAAATGGCCTCTCGCTAGT+GGG 0.487245 3_4:+11924677 Msa0490380:three_prime_UTR
CGAATCTGTTGAAGAAAGCT+TGG 0.491323 3_4:-11921653 None:intergenic
ATCCAGGGCGGCTGCAATGT+CGG 0.493844 3_4:-11923378 None:intergenic
CAAGATATTCTGTTAAGTCT+GGG 0.499249 3_4:-11921500 None:intergenic
TATAAGCTTTCCTGGATCAT+GGG 0.500752 3_4:+11921524 Msa0490380:CDS
TCTTCCAAATCCCTCATGCT+TGG 0.500980 3_4:-11923908 None:intergenic
ACTCAAAATCTAAAAGAAAA+GGG 0.502428 3_4:-11924978 None:intergenic
TGGTTTGTTAGAAAATCATT+TGG 0.503071 3_4:+11921558 Msa0490380:CDS
TGTGAGATAAACAATGGAAA+AGG 0.505004 3_4:+11923944 Msa0490380:CDS
CGCCCTGGATAGCCTTGGAC+TGG 0.507505 3_4:+11923391 Msa0490380:CDS
AGGTGGAAGAACTTTGCAGC+TGG 0.514870 3_4:+11924311 Msa0490380:CDS
TAAAATGTGGACTGATAAAG+AGG 0.520001 3_4:+11924396 Msa0490380:CDS
TCAGTTTCATCCCATGATCC+AGG 0.523269 3_4:-11921534 None:intergenic
AGGTTATTATGATGCCTTCA+AGG 0.524131 3_4:+11923964 Msa0490380:CDS
ATCTTTAAACCCACACAGGT+TGG 0.525582 3_4:+11924546 Msa0490380:three_prime_UTR
GATCTTGAGAGAACACTTCA+AGG 0.525758 3_4:-11924590 None:intergenic
GCAGCCGCCCTGGATAGCCT+TGG 0.528324 3_4:+11923386 Msa0490380:CDS
CTAGAGGCTCAACAAGTTGA+CGG 0.528764 3_4:-11924135 None:intergenic
ACTTTCCTCATTTGTAGCTG+AGG 0.530674 3_4:+11921689 Msa0490380:CDS
GATCATGGGATGAAACTGAT+TGG 0.531421 3_4:+11921538 Msa0490380:CDS
GCTGAATTAGAGGAGAGCTT+AGG 0.531773 3_4:+11923287 Msa0490380:CDS
TCACCGTCATTTGAAGAATG+AGG 0.532372 3_4:+11924171 Msa0490380:CDS
TTTGTGGGCTAGTCCATACA+AGG 0.535105 3_4:+11924641 Msa0490380:three_prime_UTR
TTCTTTAACAGTAAAGAGAG+TGG 0.542406 3_4:-11924509 None:intergenic
ACAGGTTGGCTTAGTGGCGT+CGG 0.543732 3_4:+11924560 Msa0490380:three_prime_UTR
GGATTAGTTGGAGACAACAT+AGG 0.544180 3_4:+11921381 Msa0490380:CDS
TAAGTCCGTATAGACCCTTT+GGG 0.545191 3_4:+11923111 Msa0490380:CDS
ATTCTTAAATTTAACGCATG+CGG 0.549537 3_4:-11924902 None:intergenic
TGGCAATGATGAAACTGCTT+TGG 0.552119 3_4:+11921626 Msa0490380:CDS
CAGAAAATGTAAGTCCCAAA+GGG 0.552723 3_4:-11923125 None:intergenic
AACTGCCAGATGAGTTTGAA+GGG 0.559752 3_4:+11924080 Msa0490380:CDS
GTTATGGGAAACTCTACCTC+AGG 0.565285 3_4:+11924462 Msa0490380:CDS
GTTTACAGGGCACTCTTCAG+GGG 0.565557 3_4:+11922659 Msa0490380:CDS
CCATTAGATTACAAGCAACA+TGG 0.567203 3_4:-11923043 None:intergenic
AGATCATTGAAATGCTGAAG+AGG 0.568367 3_4:+11924053 Msa0490380:CDS
GTGAAGAAAGCCATAACAGA+AGG 0.568972 3_4:+11922624 Msa0490380:CDS
TAGGTACACTCAGAGATGGT+TGG 0.571876 3_4:+11924234 Msa0490380:CDS
AAATATAGAAACATGGGAGG+AGG 0.573513 3_4:+11921360 Msa0490380:exon
GCAGAAAATGTAAGTCCCAA+AGG 0.575631 3_4:-11923126 None:intergenic
GGCTATCTTTAAACCCACAC+AGG 0.578133 3_4:+11924542 Msa0490380:three_prime_UTR
TGTCCTCATTCTTCAAATGA+CGG 0.579585 3_4:-11924174 None:intergenic
ATTAATTACTGACCAGTCCA+AGG 0.584798 3_4:-11923403 None:intergenic
ACATACCTCAGCTACAAATG+AGG 0.585270 3_4:-11921694 None:intergenic
ATTGCCTTATATCTACGAGA+AGG 0.585660 3_4:-11924703 None:intergenic
CACAGGACCTTACATGAACA+AGG 0.587269 3_4:+11924195 Msa0490380:CDS
CTAACTCGCCAGCTGCTCGA+AGG 0.591565 3_4:-11923826 None:intergenic
GACCAGTCCAAGGCTATCCA+GGG 0.591652 3_4:-11923393 None:intergenic
ACTTGTGCTTGCAGGAGTAT+GGG 0.592966 3_4:+11924027 Msa0490380:CDS
AACCAAGGATGTGTTCTCAA+AGG 0.596729 3_4:+11924423 Msa0490380:CDS
AGAAGGCCGTCCCAAGCATG+AGG 0.597386 3_4:+11923897 Msa0490380:CDS
CAAGGTGCAAAAGGATCCAA+AGG 0.597796 3_4:+11923982 Msa0490380:CDS
CGCCACTAAGCCAACCTGTG+TGG 0.600279 3_4:-11924556 None:intergenic
GAACTGCCAGATGAGTTTGA+AGG 0.604489 3_4:+11924079 Msa0490380:CDS
GAATATATGATTACCAACCA+AGG 0.604755 3_4:-11922787 None:intergenic
TTGAACTGCTGTGACTGTTG+TGG 0.605745 3_4:-11925091 None:intergenic
TTGCCTTATATCTACGAGAA+GGG 0.606274 3_4:-11924702 None:intergenic
GACCTTACATGAACAAGGCT+AGG 0.606472 3_4:+11924200 Msa0490380:CDS
GCCACTAAGCCAACCTGTGT+GGG 0.606599 3_4:-11924555 None:intergenic
CAATGAGATGACAGAACATG+TGG 0.606675 3_4:-11924815 None:intergenic
TGCAATATGACATTGTGCCA+AGG 0.607100 3_4:+11922862 Msa0490380:CDS
GATGTAGATTTATGTTCCTG+AGG 0.607470 3_4:-11924478 None:intergenic
ACAAACCAAATATAGAAACA+TGG 0.611053 3_4:+11921353 Msa0490380:exon
CAAACCAAATATAGAAACAT+GGG 0.614166 3_4:+11921354 Msa0490380:exon
TCAACATGTGAGATAAACAA+TGG 0.616431 3_4:+11923938 Msa0490380:CDS
TGGTAATGGCCAGCTGATTG+TGG 0.617049 3_4:+11923151 Msa0490380:CDS
CAAATCCCTCATGCTTGGGA+CGG 0.617619 3_4:-11923903 None:intergenic
TGAAGAAAGCCATAACAGAA+GGG 0.618618 3_4:+11922625 Msa0490380:CDS
CTGTACTCTTGGATGCTTAG+GGG 0.623280 3_4:+11924933 Msa0490380:three_prime_UTR
GGAAGCAAGTAGTGTTTACA+GGG 0.623668 3_4:+11922646 Msa0490380:CDS
AATATATGATTACCAACCAA+GGG 0.624396 3_4:-11922786 None:intergenic
TAAATGGCCTCTCGCTAGTG+GGG 0.632966 3_4:+11924678 Msa0490380:three_prime_UTR
GGTATAGGTACACTCAGAGA+TGG 0.637909 3_4:+11924230 Msa0490380:CDS
TTGAGCAAGATATTAAAATG+TGG 0.638522 3_4:+11924383 Msa0490380:CDS
TGATAATTGGCAATATCTAG+AGG 0.642810 3_4:-11924151 None:intergenic
TGAACAAGGCTAGGCCAAAG+AGG 0.645683 3_4:+11924209 Msa0490380:CDS
AAGATATTCTGTTAAGTCTG+GGG 0.645763 3_4:-11921499 None:intergenic
GAAGGGTCCCCACTAGCGAG+AGG 0.648307 3_4:-11924685 None:intergenic
TGACCATCACCAGCAGACAA+AGG 0.649953 3_4:-11923350 None:intergenic
GAAGGCCGTCCCAAGCATGA+GGG 0.652947 3_4:+11923898 Msa0490380:CDS
GAACCAAAAGTGACACACAT+GGG 0.654173 3_4:-11922762 None:intergenic
TGATAAAGAGGTACTAACCA+AGG 0.655185 3_4:+11924408 Msa0490380:CDS
ACCAAATATAGAAACATGGG+AGG 0.661129 3_4:+11921357 Msa0490380:exon
CAACATAGGATTAAACGAAG+AGG 0.662983 3_4:+11921395 Msa0490380:CDS
AGAACCAAAAGTGACACACA+TGG 0.671365 3_4:-11922763 None:intergenic
GAGCTTAGGAATGCAAAATG+TGG 0.681078 3_4:+11923301 Msa0490380:CDS
CAGTCCAAGGCTATCCAGGG+CGG 0.692022 3_4:-11923390 None:intergenic
TGCTGCATTCCTCATCACAG+TGG 0.699489 3_4:-11923009 None:intergenic
CATTTGAAGAATGAGGACAC+AGG 0.760387 3_4:+11924178 Msa0490380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCTTTCTTTTTATT+TGG + chr3_4:11921756-11921775 Msa0490380:intron 10.0%
!!! AAATAGTTAAGTTAATTTTT+TGG + chr3_4:11922512-11922531 Msa0490380:intron 10.0%
!!! AAAAAATATTTTATTTTCCA+AGG - chr3_4:11924754-11924773 None:intergenic 10.0%
!! TTAAATGAATAAATTCAATT+CGG + chr3_4:11925062-11925081 Msa0490380:three_prime_UTR 10.0%
!!! TTTTTCAATTAAGATAACAT+TGG + chr3_4:11921993-11922012 Msa0490380:intron 15.0%
!! AAATGAAGAGAAAATAAAAA+AGG + chr3_4:11923865-11923884 Msa0490380:CDS 15.0%
!! AAACTATATTAGAATATAGT+TGG + chr3_4:11925007-11925026 Msa0490380:three_prime_UTR 15.0%
!! AATAATAATGAAAGATTGTG+TGG - chr3_4:11921737-11921756 None:intergenic 20.0%
!!! TCTTTCTTTTTATTTGGAAT+TGG + chr3_4:11921762-11921781 Msa0490380:intron 20.0%
!! TTTATAGCTTATAAGTTCAT+AGG + chr3_4:11921822-11921841 Msa0490380:intron 20.0%
!!! GTTATTAAACATGTCTATTT+TGG - chr3_4:11921849-11921868 None:intergenic 20.0%
!! ATAAAAAATGGTTATGGATT+TGG - chr3_4:11922203-11922222 None:intergenic 20.0%
!! TAGCTTATAAAAAATGGTTA+TGG - chr3_4:11922209-11922228 None:intergenic 20.0%
!! TTGAAGTAGCTTATAAAAAA+TGG - chr3_4:11922215-11922234 None:intergenic 20.0%
!! ATTGTTTCAATTAAGATAAC+TGG - chr3_4:11922275-11922294 None:intergenic 20.0%
!!! ATTTCACAAATTATCTGTTT+TGG + chr3_4:11922471-11922490 Msa0490380:intron 20.0%
!! TATAAGATCTATCATATTGA+TGG - chr3_4:11923704-11923723 None:intergenic 20.0%
!!! ATAATTTTGCTAGCTTATAT+GGG + chr3_4:11923744-11923763 Msa0490380:intron 20.0%
!! CTGTTAAAGAATAAATCAAT+TGG + chr3_4:11924521-11924540 Msa0490380:exon 20.0%
!! ACTCAAAATCTAAAAGAAAA+GGG - chr3_4:11924981-11925000 None:intergenic 20.0%
!! AACTCAAAATCTAAAAGAAA+AGG - chr3_4:11924982-11925001 None:intergenic 20.0%
! TTGTCATGTTCGTATATATA+AGG - chr3_4:11921322-11921341 None:intergenic 25.0%
! ACAAACCAAATATAGAAACA+TGG + chr3_4:11921353-11921372 Msa0490380:exon 25.0%
! CAAACCAAATATAGAAACAT+GGG + chr3_4:11921354-11921373 Msa0490380:exon 25.0%
! TCAAACACTTCTGTAATATA+AGG - chr3_4:11921474-11921493 None:intergenic 25.0%
!!! TGGTTTGTTAGAAAATCATT+TGG + chr3_4:11921558-11921577 Msa0490380:CDS 25.0%
!! TTTCATTTGCTTAAAAGTGT+TGG + chr3_4:11921606-11921625 Msa0490380:CDS 25.0%
! TATACTTGATGAACTTATAG+CGG + chr3_4:11921873-11921892 Msa0490380:intron 25.0%
! ATTTGTAGTGATTGGTAAAT+AGG + chr3_4:11921943-11921962 Msa0490380:intron 25.0%
! ATATAAGCTACTTGAATTAG+CGG + chr3_4:11922020-11922039 Msa0490380:intron 25.0%
! ATGACTAAAAAGGATATATC+TGG - chr3_4:11922129-11922148 None:intergenic 25.0%
! ATATGCTCATATGACTAAAA+AGG - chr3_4:11922139-11922158 None:intergenic 25.0%
! TTAATGTGACAAACAACATT+AGG - chr3_4:11922436-11922455 None:intergenic 25.0%
! TTGTGAAATTACTCAAATCA+TGG - chr3_4:11922460-11922479 None:intergenic 25.0%
! AATATATGATTACCAACCAA+GGG - chr3_4:11922789-11922808 None:intergenic 25.0%
!!! TCAACCATTATTTTAAACCT+TGG + chr3_4:11923577-11923596 Msa0490380:intron 25.0%
!! CTAACCAAGGTTTAAAATAA+TGG - chr3_4:11923584-11923603 None:intergenic 25.0%
!!! CATAATTTTGCTAGCTTATA+TGG + chr3_4:11923743-11923762 Msa0490380:intron 25.0%
! GAAAATAAAAAAGGAGTTTC+AGG + chr3_4:11923874-11923893 Msa0490380:CDS 25.0%
!!! AAAAAAGAATGGATTGAACT+CGG + chr3_4:11924103-11924122 Msa0490380:CDS 25.0%
!!! TAAACCTTTTGAAGATATCA+AGG + chr3_4:11924345-11924364 Msa0490380:CDS 25.0%
!!! TTTTGAAGATATCAAGGAAA+GGG + chr3_4:11924351-11924370 Msa0490380:CDS 25.0%
! TTGAGCAAGATATTAAAATG+TGG + chr3_4:11924383-11924402 Msa0490380:CDS 25.0%
! ATCCTACATTCATAAAGTTA+TGG + chr3_4:11924446-11924465 Msa0490380:CDS 25.0%
! TCCTACATTCATAAAGTTAT+GGG + chr3_4:11924447-11924466 Msa0490380:CDS 25.0%
! ATTCTTAAATTTAACGCATG+CGG - chr3_4:11924905-11924924 None:intergenic 25.0%
AAGATATTCTGTTAAGTCTG+GGG - chr3_4:11921502-11921521 None:intergenic 30.0%
CAAGATATTCTGTTAAGTCT+GGG - chr3_4:11921503-11921522 None:intergenic 30.0%
ACAAGATATTCTGTTAAGTC+TGG - chr3_4:11921504-11921523 None:intergenic 30.0%
! TATCTTGTTATAAGCTTTCC+TGG + chr3_4:11921516-11921535 Msa0490380:CDS 30.0%
CTGATTGAATTTGTAGTGAT+TGG + chr3_4:11921935-11921954 Msa0490380:intron 30.0%
TTGGTGAAAACATAACAGAT+AGG - chr3_4:11922408-11922427 None:intergenic 30.0%
CAAACAACATTAGGACTATT+TGG - chr3_4:11922427-11922446 None:intergenic 30.0%
GAATATATGATTACCAACCA+AGG - chr3_4:11922790-11922809 None:intergenic 30.0%
ATGCTTCAAACAGAGAAAAA+TGG + chr3_4:11922814-11922833 Msa0490380:CDS 30.0%
!! AGTTTTTCAATGGAAGAGAA+AGG - chr3_4:11922900-11922919 None:intergenic 30.0%
!! AGGACTAATGAGTTTTTCAA+TGG - chr3_4:11922910-11922929 None:intergenic 30.0%
TCTTATTGGATCTTGAGTTA+AGG - chr3_4:11922964-11922983 None:intergenic 30.0%
! CATGTTGCTTGTAATCTAAT+GGG + chr3_4:11923044-11923063 Msa0490380:CDS 30.0%
! TACATTTTCTGCAATGGTAA+TGG + chr3_4:11923137-11923156 Msa0490380:CDS 30.0%
TCAACATGTGAGATAAACAA+TGG + chr3_4:11923938-11923957 Msa0490380:CDS 30.0%
TGTGAGATAAACAATGGAAA+AGG + chr3_4:11923944-11923963 Msa0490380:CDS 30.0%
AGTTTGAAGGGAAAAAAGAA+TGG + chr3_4:11924092-11924111 Msa0490380:CDS 30.0%
TGATAATTGGCAATATCTAG+AGG - chr3_4:11924154-11924173 None:intergenic 30.0%
! AAATCACAGAATCTACCTTT+TGG + chr3_4:11924284-11924303 Msa0490380:CDS 30.0%
! AATCACAGAATCTACCTTTT+GGG + chr3_4:11924285-11924304 Msa0490380:CDS 30.0%
CTTTCCTTGATATCTTCAAA+AGG - chr3_4:11924352-11924371 None:intergenic 30.0%
!! CTTTTGAAGATATCAAGGAA+AGG + chr3_4:11924350-11924369 Msa0490380:CDS 30.0%
! TAAAATGTGGACTGATAAAG+AGG + chr3_4:11924396-11924415 Msa0490380:CDS 30.0%
TCCCATAACTTTATGAATGT+AGG - chr3_4:11924451-11924470 None:intergenic 30.0%
TTCTTTAACAGTAAAGAGAG+TGG - chr3_4:11924512-11924531 None:intergenic 30.0%
!!! CTCCTAATGTCATTTTTTGT+GGG + chr3_4:11924626-11924645 Msa0490380:three_prime_UTR 30.0%
! TTCTGTCATCTCATTGTTTT+AGG + chr3_4:11924822-11924841 Msa0490380:three_prime_UTR 30.0%
AATCATTGTATCTGTACTCT+TGG + chr3_4:11924922-11924941 Msa0490380:three_prime_UTR 30.0%
ACCAAATATAGAAACATGGG+AGG + chr3_4:11921357-11921376 Msa0490380:exon 35.0%
! TCCTCCCATGTTTCTATATT+TGG - chr3_4:11921361-11921380 None:intergenic 35.0%
AAATATAGAAACATGGGAGG+AGG + chr3_4:11921360-11921379 Msa0490380:exon 35.0%
CAACATAGGATTAAACGAAG+AGG + chr3_4:11921395-11921414 Msa0490380:CDS 35.0%
TTATAAGCTTTCCTGGATCA+TGG + chr3_4:11921523-11921542 Msa0490380:CDS 35.0%
TATAAGCTTTCCTGGATCAT+GGG + chr3_4:11921524-11921543 Msa0490380:CDS 35.0%
TAATGAAAGATTGTGTGGCA+GGG - chr3_4:11921732-11921751 None:intergenic 35.0%
ATAATGAAAGATTGTGTGGC+AGG - chr3_4:11921733-11921752 None:intergenic 35.0%
TATTAGCGCAAAATTTGTCG+TGG - chr3_4:11921794-11921813 None:intergenic 35.0%
CGATAAGCTAGCTGATTATT+TGG - chr3_4:11922385-11922404 None:intergenic 35.0%
TGCAATGCAACACATTTGAT+TGG - chr3_4:11922603-11922622 None:intergenic 35.0%
AATCAAATGTGTTGCATTGC+AGG + chr3_4:11922602-11922621 Msa0490380:intron 35.0%
TGAAGAAAGCCATAACAGAA+GGG + chr3_4:11922625-11922644 Msa0490380:CDS 35.0%
!!! GCTGAATTTGGATTTTGGTT+GGG - chr3_4:11922734-11922753 None:intergenic 35.0%
!! TGCTGAATTTGGATTTTGGT+TGG - chr3_4:11922735-11922754 None:intergenic 35.0%
! CTTGTGCTGAATTTGGATTT+TGG - chr3_4:11922739-11922758 None:intergenic 35.0%
! TGAGTTAAGGAGTTGTTGTT+AGG - chr3_4:11922951-11922970 None:intergenic 35.0%
CCATTAGATTACAAGCAACA+TGG - chr3_4:11923046-11923065 None:intergenic 35.0%
! CCATGTTGCTTGTAATCTAA+TGG + chr3_4:11923043-11923062 Msa0490380:CDS 35.0%
CAGAAAATGTAAGTCCCAAA+GGG - chr3_4:11923128-11923147 None:intergenic 35.0%
!!! AGTTTTTTACCACAATCAGC+TGG - chr3_4:11923163-11923182 None:intergenic 35.0%
TATTGCTCAGCTAAGAGATT+TGG + chr3_4:11923211-11923230 Msa0490380:CDS 35.0%
ATTAATTACTGACCAGTCCA+AGG - chr3_4:11923406-11923425 None:intergenic 35.0%
ACAATAACATGCTCTAACCA+AGG - chr3_4:11923597-11923616 None:intergenic 35.0%
ACCATCCATTTACGATTGTA+TGG + chr3_4:11923634-11923653 Msa0490380:intron 35.0%
ACCATACAATCGTAAATGGA+TGG - chr3_4:11923638-11923657 None:intergenic 35.0%
CTTGACCATACAATCGTAAA+TGG - chr3_4:11923642-11923661 None:intergenic 35.0%
AAAAAAGGAGTTTCAGGAGA+AGG + chr3_4:11923880-11923899 Msa0490380:CDS 35.0%
AGGTTATTATGATGCCTTCA+AGG + chr3_4:11923964-11923983 Msa0490380:CDS 35.0%
AGATCATTGAAATGCTGAAG+AGG + chr3_4:11924053-11924072 Msa0490380:CDS 35.0%
! TTTTTCCCTTCAAACTCATC+TGG - chr3_4:11924088-11924107 None:intergenic 35.0%
CTTCAAATGACGGTGATAAT+TGG - chr3_4:11924167-11924186 None:intergenic 35.0%
TGTCCTCATTCTTCAAATGA+CGG - chr3_4:11924177-11924196 None:intergenic 35.0%
! GATTCTGTGATTTCTGCTTT+TGG - chr3_4:11924277-11924296 None:intergenic 35.0%
!! TGATAAAGAGGTACTAACCA+AGG + chr3_4:11924408-11924427 Msa0490380:CDS 35.0%
GATGTAGATTTATGTTCCTG+AGG - chr3_4:11924481-11924500 None:intergenic 35.0%
CCACAAAAAATGACATTAGG+AGG - chr3_4:11924628-11924647 None:intergenic 35.0%
!!! CCTCCTAATGTCATTTTTTG+TGG + chr3_4:11924625-11924644 Msa0490380:three_prime_UTR 35.0%
AGCCCACAAAAAATGACATT+AGG - chr3_4:11924631-11924650 None:intergenic 35.0%
TTGCCTTATATCTACGAGAA+GGG - chr3_4:11924705-11924724 None:intergenic 35.0%
ATTGCCTTATATCTACGAGA+AGG - chr3_4:11924706-11924725 None:intergenic 35.0%
CAAAGTAGTAGTACAATTGC+AGG - chr3_4:11924778-11924797 None:intergenic 35.0%
CTGCAATTGTACTACTACTT+TGG + chr3_4:11924776-11924795 Msa0490380:three_prime_UTR 35.0%
!! GGATTAGTTGGAGACAACAT+AGG + chr3_4:11921381-11921400 Msa0490380:CDS 40.0%
GATCATGGGATGAAACTGAT+TGG + chr3_4:11921538-11921557 Msa0490380:CDS 40.0%
TGGCAATGATGAAACTGCTT+TGG + chr3_4:11921626-11921645 Msa0490380:CDS 40.0%
CGAATCTGTTGAAGAAAGCT+TGG - chr3_4:11921656-11921675 None:intergenic 40.0%
ACTTTCCTCATTTGTAGCTG+AGG + chr3_4:11921689-11921708 Msa0490380:CDS 40.0%
ACATACCTCAGCTACAAATG+AGG - chr3_4:11921697-11921716 None:intergenic 40.0%
! CTTGATGAACTTATAGCGGA+TGG + chr3_4:11921877-11921896 Msa0490380:intron 40.0%
AGATACTCGTGAGAAAGTGA+CGG + chr3_4:11922100-11922119 Msa0490380:intron 40.0%
GTGAAGAAAGCCATAACAGA+AGG + chr3_4:11922624-11922643 Msa0490380:CDS 40.0%
TACTTGCTTCCCTTCTGTTA+TGG - chr3_4:11922637-11922656 None:intergenic 40.0%
GGAAGCAAGTAGTGTTTACA+GGG + chr3_4:11922646-11922665 Msa0490380:CDS 40.0%
! TGGCCATTCTAGCAACATTT+TGG + chr3_4:11922688-11922707 Msa0490380:CDS 40.0%
! GGCCATTCTAGCAACATTTT+GGG + chr3_4:11922689-11922708 Msa0490380:CDS 40.0%
TGCCCAAAATGTTGCTAGAA+TGG - chr3_4:11922694-11922713 None:intergenic 40.0%
! TCTAGCAACATTTTGGGCAT+TGG + chr3_4:11922695-11922714 Msa0490380:CDS 40.0%
GAACCAAAAGTGACACACAT+GGG - chr3_4:11922765-11922784 None:intergenic 40.0%
AGAACCAAAAGTGACACACA+TGG - chr3_4:11922766-11922785 None:intergenic 40.0%
TGCAATATGACATTGTGCCA+AGG + chr3_4:11922862-11922881 Msa0490380:CDS 40.0%
AAAGGAGCGAGAAAAATCCT+TGG - chr3_4:11922882-11922901 None:intergenic 40.0%
CAAGTCACACTGTCTCTTAT+TGG - chr3_4:11922978-11922997 None:intergenic 40.0%
! AGTTTTACTCCACTGTGATG+AGG + chr3_4:11923000-11923019 Msa0490380:CDS 40.0%
!! GGGAAGCACAAATTTGTTGT+TGG + chr3_4:11923064-11923083 Msa0490380:CDS 40.0%
TTAAGTCCGTATAGACCCTT+TGG + chr3_4:11923110-11923129 Msa0490380:CDS 40.0%
TAAGTCCGTATAGACCCTTT+GGG + chr3_4:11923111-11923130 Msa0490380:CDS 40.0%
TAAGTCCCAAAGGGTCTATA+CGG - chr3_4:11923119-11923138 None:intergenic 40.0%
GCAGAAAATGTAAGTCCCAA+AGG - chr3_4:11923129-11923148 None:intergenic 40.0%
! GGGACTTACATTTTCTGCAA+TGG + chr3_4:11923131-11923150 Msa0490380:CDS 40.0%
! ATGCTGCAGTATGCTTTTGT+TGG - chr3_4:11923255-11923274 None:intergenic 40.0%
AGCCTATGAAGCTGAATTAG+AGG + chr3_4:11923277-11923296 Msa0490380:CDS 40.0%
CTCCTCTAATTCAGCTTCAT+AGG - chr3_4:11923282-11923301 None:intergenic 40.0%
GAGCTTAGGAATGCAAAATG+TGG + chr3_4:11923301-11923320 Msa0490380:CDS 40.0%
GTTAGAGCGAAGGTTTCAAA+AGG + chr3_4:11923466-11923485 Msa0490380:intron 40.0%
! GGTTTCAAAAGGTGTGATTG+TGG + chr3_4:11923477-11923496 Msa0490380:intron 40.0%
ACGTTTGCTTGGAAATCCTT+TGG - chr3_4:11924001-11924020 None:intergenic 40.0%
AACTGCCAGATGAGTTTGAA+GGG + chr3_4:11924080-11924099 Msa0490380:CDS 40.0%
TCACCGTCATTTGAAGAATG+AGG + chr3_4:11924171-11924190 Msa0490380:CDS 40.0%
CATTTGAAGAATGAGGACAC+AGG + chr3_4:11924178-11924197 Msa0490380:CDS 40.0%
TGAGTGTACCTATACCTCTT+TGG - chr3_4:11924226-11924245 None:intergenic 40.0%
AACCAAGGATGTGTTCTCAA+AGG + chr3_4:11924423-11924442 Msa0490380:CDS 40.0%
! ATCCTTTGAGAACACATCCT+TGG - chr3_4:11924428-11924447 None:intergenic 40.0%
ATCTTTAAACCCACACAGGT+TGG + chr3_4:11924546-11924565 Msa0490380:three_prime_UTR 40.0%
GATCTTGAGAGAACACTTCA+AGG - chr3_4:11924593-11924612 None:intergenic 40.0%
GACATTAGGAGGATTTGAAC+TGG - chr3_4:11924617-11924636 None:intergenic 40.0%
!! GGATTTGCTCTGGCTTTAAA+TGG + chr3_4:11924662-11924681 Msa0490380:three_prime_UTR 40.0%
ATGACTACTTCAACACTCCT+TGG + chr3_4:11924734-11924753 Msa0490380:three_prime_UTR 40.0%
GAACATGTGGCTTGAATAAG+AGG - chr3_4:11924805-11924824 None:intergenic 40.0%
CAATGAGATGACAGAACATG+TGG - chr3_4:11924818-11924837 None:intergenic 40.0%
ATCTGTACTCTTGGATGCTT+AGG + chr3_4:11924931-11924950 Msa0490380:three_prime_UTR 40.0%
TCTGTACTCTTGGATGCTTA+GGG + chr3_4:11924932-11924951 Msa0490380:three_prime_UTR 40.0%
! AACATGGGAGGAGGATTAGT+TGG + chr3_4:11921369-11921388 Msa0490380:exon 45.0%
TCAGTTTCATCCCATGATCC+AGG - chr3_4:11921537-11921556 None:intergenic 45.0%
GGGAAGCAAGTAGTGTTTAC+AGG + chr3_4:11922645-11922664 Msa0490380:CDS 45.0%
! TGTTTACAGGGCACTCTTCA+GGG + chr3_4:11922658-11922677 Msa0490380:CDS 45.0%
! TGGGTGACTTGTGCTGAATT+TGG - chr3_4:11922746-11922765 None:intergenic 45.0%
!!! TCACCCATGTGTGTCACTTT+TGG + chr3_4:11922759-11922778 Msa0490380:CDS 45.0%
!!! TGTCACTTTTGGTTCTCCCT+TGG + chr3_4:11922770-11922789 Msa0490380:CDS 45.0%
!!! ACTTTTGGTTCTCCCTTGGT+TGG + chr3_4:11922774-11922793 Msa0490380:CDS 45.0%
GGAGTCAAAAGCTGAAGAAC+AGG - chr3_4:11922930-11922949 None:intergenic 45.0%
GCTGAATTAGAGGAGAGCTT+AGG + chr3_4:11923287-11923306 Msa0490380:CDS 45.0%
AGCGTATTGAGTTAGAGCGA+AGG + chr3_4:11923456-11923475 Msa0490380:intron 45.0%
CTTCCAAATCCCTCATGCTT+GGG - chr3_4:11923910-11923929 None:intergenic 45.0%
TCTTCCAAATCCCTCATGCT+TGG - chr3_4:11923911-11923930 None:intergenic 45.0%
TGATGCCTTCAAGGTGCAAA+AGG + chr3_4:11923973-11923992 Msa0490380:CDS 45.0%
! TGGATCCTTTTGCACCTTGA+AGG - chr3_4:11923981-11924000 None:intergenic 45.0%
CAAGGTGCAAAAGGATCCAA+AGG + chr3_4:11923982-11924001 Msa0490380:CDS 45.0%
CAAGTCTCTTCACGTTTGCT+TGG - chr3_4:11924012-11924031 None:intergenic 45.0%
! ACTTGTGCTTGCAGGAGTAT+GGG + chr3_4:11924027-11924046 Msa0490380:CDS 45.0%
GAACTGCCAGATGAGTTTGA+AGG + chr3_4:11924079-11924098 Msa0490380:CDS 45.0%
! CTAGAGGCTCAACAAGTTGA+CGG - chr3_4:11924138-11924157 None:intergenic 45.0%
CACAGGACCTTACATGAACA+AGG + chr3_4:11924195-11924214 Msa0490380:CDS 45.0%
GACCTTACATGAACAAGGCT+AGG + chr3_4:11924200-11924219 Msa0490380:CDS 45.0%
GGTATAGGTACACTCAGAGA+TGG + chr3_4:11924230-11924249 Msa0490380:CDS 45.0%
TAGGTACACTCAGAGATGGT+TGG + chr3_4:11924234-11924253 Msa0490380:CDS 45.0%
! AGAATCTACCTTTTGGGCTG+AGG + chr3_4:11924291-11924310 Msa0490380:CDS 45.0%
GTTATGGGAAACTCTACCTC+AGG + chr3_4:11924462-11924481 Msa0490380:CDS 45.0%
AGTAAAGAGAGTGGAGATGC+AGG - chr3_4:11924503-11924522 None:intergenic 45.0%
GGCTATCTTTAAACCCACAC+AGG + chr3_4:11924542-11924561 Msa0490380:three_prime_UTR 45.0%
!! TTTGTGGGCTAGTCCATACA+AGG + chr3_4:11924641-11924660 Msa0490380:three_prime_UTR 45.0%
! GTCCATACAAGGATTTGCTC+TGG + chr3_4:11924652-11924671 Msa0490380:three_prime_UTR 45.0%
AGCCAGAGCAAATCCTTGTA+TGG - chr3_4:11924657-11924676 None:intergenic 45.0%
TTTAAATGGCCTCTCGCTAG+TGG + chr3_4:11924676-11924695 Msa0490380:three_prime_UTR 45.0%
TTAAATGGCCTCTCGCTAGT+GGG + chr3_4:11924677-11924696 Msa0490380:three_prime_UTR 45.0%
GGACCCTTCTCGTAGATATA+AGG + chr3_4:11924699-11924718 Msa0490380:three_prime_UTR 45.0%
CTGTACTCTTGGATGCTTAG+GGG + chr3_4:11924933-11924952 Msa0490380:three_prime_UTR 45.0%
!! AAAATAATTATTATAGATAA+AGG + chr3_4:11922547-11922566 Msa0490380:intron 5.0%
! GTGTTTACAGGGCACTCTTC+AGG + chr3_4:11922657-11922676 Msa0490380:CDS 50.0%
! GTTTACAGGGCACTCTTCAG+GGG + chr3_4:11922659-11922678 Msa0490380:CDS 50.0%
TGCTGCATTCCTCATCACAG+TGG - chr3_4:11923012-11923031 None:intergenic 50.0%
!! TGGTAATGGCCAGCTGATTG+TGG + chr3_4:11923151-11923170 Msa0490380:CDS 50.0%
GACGATCTTCCTTTGTCTGC+TGG + chr3_4:11923341-11923360 Msa0490380:CDS 50.0%
CTTCCTTTGTCTGCTGGTGA+TGG + chr3_4:11923347-11923366 Msa0490380:CDS 50.0%
TGACCATCACCAGCAGACAA+AGG - chr3_4:11923353-11923372 None:intergenic 50.0%
CTACACTGCGACTGCAATTG+TGG + chr3_4:11923535-11923554 Msa0490380:intron 50.0%
GTGAGAGCAGAAGATGCAAG+AGG - chr3_4:11923672-11923691 None:intergenic 50.0%
CAAATCCCTCATGCTTGGGA+CGG - chr3_4:11923906-11923925 None:intergenic 50.0%
GTGAAGAGACTTGTGCTTGC+AGG + chr3_4:11924019-11924038 Msa0490380:CDS 50.0%
GACTTGTGCTTGCAGGAGTA+TGG + chr3_4:11924026-11924045 Msa0490380:CDS 50.0%
!! GGCCTAGCCTTGTTCATGTA+AGG - chr3_4:11924205-11924224 None:intergenic 50.0%
TGAACAAGGCTAGGCCAAAG+AGG + chr3_4:11924209-11924228 Msa0490380:CDS 50.0%
! AGGCTAGGCCAAAGAGGTAT+AGG + chr3_4:11924215-11924234 Msa0490380:CDS 50.0%
GATGGTTGGAGCATGCAAAC+AGG + chr3_4:11924248-11924267 Msa0490380:CDS 50.0%
! ATCTACCTTTTGGGCTGAGG+TGG + chr3_4:11924294-11924313 Msa0490380:CDS 50.0%
TTCTTCCACCTCAGCCCAAA+AGG - chr3_4:11924302-11924321 None:intergenic 50.0%
AGGTGGAAGAACTTTGCAGC+TGG + chr3_4:11924311-11924330 Msa0490380:CDS 50.0%
TAAATGGCCTCTCGCTAGTG+GGG + chr3_4:11924678-11924697 Msa0490380:three_prime_UTR 50.0%
! GCACTCTTCAGGGGCTGTTT+TGG + chr3_4:11922668-11922687 Msa0490380:CDS 55.0%
GACCAGTCCAAGGCTATCCA+GGG - chr3_4:11923396-11923415 None:intergenic 55.0%
TGACCAGTCCAAGGCTATCC+AGG - chr3_4:11923397-11923416 None:intergenic 55.0%
CGTCCCAAGCATGAGGGATT+TGG + chr3_4:11923904-11923923 Msa0490380:CDS 55.0%
!! ACCCACACAGGTTGGCTTAG+TGG + chr3_4:11924554-11924573 Msa0490380:three_prime_UTR 55.0%
GCCACTAAGCCAACCTGTGT+GGG - chr3_4:11924558-11924577 None:intergenic 55.0%
!! ACAGGTTGGCTTAGTGGCGT+CGG + chr3_4:11924560-11924579 Msa0490380:three_prime_UTR 55.0%
ATCCAGGGCGGCTGCAATGT+CGG - chr3_4:11923381-11923400 None:intergenic 60.0%
CAGTCCAAGGCTATCCAGGG+CGG - chr3_4:11923393-11923412 None:intergenic 60.0%
CGACTATGCCTTCGAGCAGC+TGG + chr3_4:11923818-11923837 Msa0490380:CDS 60.0%
CTAACTCGCCAGCTGCTCGA+AGG - chr3_4:11923829-11923848 None:intergenic 60.0%
AGAAGGCCGTCCCAAGCATG+AGG + chr3_4:11923897-11923916 Msa0490380:CDS 60.0%
GAAGGCCGTCCCAAGCATGA+GGG + chr3_4:11923898-11923917 Msa0490380:CDS 60.0%
CGCCACTAAGCCAACCTGTG+TGG - chr3_4:11924559-11924578 None:intergenic 60.0%
!! TTGGCTTAGTGGCGTCGGCT+TGG + chr3_4:11924565-11924584 Msa0490380:three_prime_UTR 60.0%
!! TGGCTTAGTGGCGTCGGCTT+GGG + chr3_4:11924566-11924585 Msa0490380:three_prime_UTR 60.0%
TACCGACATTGCAGCCGCCC+TGG + chr3_4:11923376-11923395 Msa0490380:CDS 65.0%
! CGCCCTGGATAGCCTTGGAC+TGG + chr3_4:11923391-11923410 Msa0490380:CDS 65.0%
GAAGGGTCCCCACTAGCGAG+AGG - chr3_4:11924688-11924707 None:intergenic 65.0%
GCAGCCGCCCTGGATAGCCT+TGG + chr3_4:11923386-11923405 Msa0490380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 11921314 11925098 11921314 ID=Msa0490380;Name=Msa0490380
chr3_4 mRNA 11921314 11925098 11921314 ID=Msa0490380-mRNA-1;Parent=Msa0490380;Name=Msa0490380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=58|1|1|1|1|1|3|564|618
chr3_4 exon 11921314 11921710 11921314 ID=Msa0490380-mRNA-1:exon:3662;Parent=Msa0490380-mRNA-1
chr3_4 exon 11922624 11923412 11922624 ID=Msa0490380-mRNA-1:exon:3663;Parent=Msa0490380-mRNA-1
chr3_4 exon 11923806 11925098 11923806 ID=Msa0490380-mRNA-1:exon:3664;Parent=Msa0490380-mRNA-1
chr3_4 five_prime_UTR 11921314 11921371 11921314 ID=Msa0490380-mRNA-1:five_prime_utr;Parent=Msa0490380-mRNA-1
chr3_4 CDS 11921372 11921710 11921372 ID=Msa0490380-mRNA-1:cds;Parent=Msa0490380-mRNA-1
chr3_4 CDS 11922624 11923412 11922624 ID=Msa0490380-mRNA-1:cds;Parent=Msa0490380-mRNA-1
chr3_4 CDS 11923806 11924534 11923806 ID=Msa0490380-mRNA-1:cds;Parent=Msa0490380-mRNA-1
chr3_4 three_prime_UTR 11924535 11925098 11924535 ID=Msa0490380-mRNA-1:three_prime_utr;Parent=Msa0490380-mRNA-1
Gene Sequence

>Msa0490380

ATGGGAGGAGGATTAGTTGGAGACAACATAGGATTAAACGAAGAGGTTATCAAAAAAACATGTAGTTTGTCTTTCAAAGCTCACAACTCAGCAAATGAACCTTATATTACAGAAGTGTTTGAGACATCCCCAGACTTAACAGAATATCTTGTTATAAGCTTTCCTGGATCATGGGATGAAACTGATTGGTTTGTTAGAAAATCATTTGGTGAAACTAAGATTGATCTTGCTAAGTTTCATTTGCTTAAAAGTGTTGGCAATGATGAAACTGCTTTGGTCAACCAAGCTTTCTTCAACAGATTCGATCGTTTGTTGAAACTTTCCTCATTTGTAGCTGAGGTGAAGAAAGCCATAACAGAAGGGAAGCAAGTAGTGTTTACAGGGCACTCTTCAGGGGCTGTTTTGGCCATTCTAGCAACATTTTGGGCATTGGAAGAGTATCTTTACCCAACCAAAATCCAAATTCAGCACAAGTCACCCATGTGTGTCACTTTTGGTTCTCCCTTGGTTGGTAATCATATATTCTCTCATGCTTCAAACAGAGAAAAATGGTCTCATCATTTCATACACTTTGTCATGCAATATGACATTGTGCCAAGGATTTTTCTCGCTCCTTTCTCTTCCATTGAAAAACTCATTAGTCCTGTTCTTCAGCTTTTGACTCCTAACAACAACTCCTTAACTCAAGATCCAATAAGAGACAGTGTGACTTGTGAGTTTTACTCCACTGTGATGAGGAATGCAGCAACTGTTACAAGCCATGTTGCTTGTAATCTAATGGGAAGCACAAATTTGTTGTTGGAGACTATGACAAATTTCGTCGAGTTAAGTCCGTATAGACCCTTTGGGACTTACATTTTCTGCAATGGTAATGGCCAGCTGATTGTGGTAAAAAACTCAGACGCTGTTTTACAACTTCTGTTTCATATTGCTCAGCTAAGAGATTTGGCACAACTTTCTGAAGTTGCCAACAAAAGCATACTGCAGCATCTAGCCTATGAAGCTGAATTAGAGGAGAGCTTAGGAATGCAAAATGTGGTGTACTTAAACAAACTTGACGATCTTCCTTTGTCTGCTGGTGATGGTCATGATACCGACATTGCAGCCGCCCTGGATAGCCTTGGACTGAGCGCAAGAGCACGACTATGCCTTCGAGCAGCTGGCGAGTTAGAAAAGCAAAAAGAAAGAAATGAAGAGAAAATAAAAAAGGAGTTTCAGGAGAAGGCCGTCCCAAGCATGAGGGATTTGGAAGAGTACAAATCAACATGTGAGATAAACAATGGAAAAGGTTATTATGATGCCTTCAAGGTGCAAAAGGATCCAAAGGATTTCCAAGCAAACGTGAAGAGACTTGTGCTTGCAGGAGTATGGGATGAGATCATTGAAATGCTGAAGAGGTATGAACTGCCAGATGAGTTTGAAGGGAAAAAAGAATGGATTGAACTCGGAACGAGATTCCGTCAACTTGTTGAGCCTCTAGATATTGCCAATTATCACCGTCATTTGAAGAATGAGGACACAGGACCTTACATGAACAAGGCTAGGCCAAAGAGGTATAGGTACACTCAGAGATGGTTGGAGCATGCAAACAGGTCACCAAAAGCAGAAATCACAGAATCTACCTTTTGGGCTGAGGTGGAAGAACTTTGCAGCTGGACTAGTAATAATAAACCTTTTGAAGATATCAAGGAAAGGGTTCTCAAACTTGAGCAAGATATTAAAATGTGGACTGATAAAGAGGTACTAACCAAGGATGTGTTCTCAAAGGATCCTACATTCATAAAGTTATGGGAAACTCTACCTCAGGAACATAAATCTACATCCTGCATCTCCACTCTCTTTACTGTTAAAGAATAA
Protein sequence

>Msa0490380

MGGGLVGDNIGLNEEVIKKTCSLSFKAHNSANEPYITEVFETSPDLTEYLVISFPGSWDETDWFVRKSFGETKIDLAKFHLLKSVGNDETALVNQAFFNRFDRLLKLSSFVAEVKKAITEGKQVVFTGHSSGAVLAILATFWALEEYLYPTKIQIQHKSPMCVTFGSPLVGNHIFSHASNREKWSHHFIHFVMQYDIVPRIFLAPFSSIEKLISPVLQLLTPNNNSLTQDPIRDSVTCEFYSTVMRNAATVTSHVACNLMGSTNLLLETMTNFVELSPYRPFGTYIFCNGNGQLIVVKNSDAVLQLLFHIAQLRDLAQLSEVANKSILQHLAYEAELEESLGMQNVVYLNKLDDLPLSAGDGHDTDIAAALDSLGLSARARLCLRAAGELEKQKERNEEKIKKEFQEKAVPSMRDLEEYKSTCEINNGKGYYDAFKVQKDPKDFQANVKRLVLAGVWDEIIEMLKRYELPDEFEGKKEWIELGTRFRQLVEPLDIANYHRHLKNEDTGPYMNKARPKRYRYTQRWLEHANRSPKAEITESTFWAEVEELCSWTSNNKPFEDIKERVLKLEQDIKMWTDKEVLTKDVFSKDPTFIKLWETLPQEHKSTSCISTLFTVKE*