Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964440 | XP_013453021.1 | 97.997 | 599 | 12 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964440 | sp|Q9LS46|ALMT9_ARATH | 60.804 | 597 | 191 | 10 | 10 | 587 | 4 | 576 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964440 | A0A072UB78 | 97.997 | 599 | 12 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0788680 | Msa0964440 | 0.887516 | 1.332465e-72 | -8.615850e-47 |
| Msa0927990 | Msa0964440 | 0.854339 | 1.314767e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964440 | MtrunA17_Chr6g0484691 | 97.997 | 599 | 12 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1216 |
| Msa0964440 | MtrunA17_Chr8g0390921 | 68.007 | 597 | 161 | 7 | 7 | 597 | 4 | 576 | 0.0 | 793 |
| Msa0964440 | MtrunA17_Chr8g0390931 | 64.407 | 590 | 167 | 10 | 20 | 599 | 12 | 568 | 0.0 | 723 |
| Msa0964440 | MtrunA17_Chr8g0390901 | 73.662 | 467 | 107 | 7 | 139 | 597 | 10 | 468 | 0.0 | 696 |
| Msa0964440 | MtrunA17_Chr1g0210101 | 54.450 | 573 | 224 | 10 | 10 | 580 | 49 | 586 | 0.0 | 594 |
| Msa0964440 | MtrunA17_Chr1g0212251 | 32.422 | 512 | 307 | 11 | 71 | 576 | 20 | 498 | 1.18e-80 | 263 |
| Msa0964440 | MtrunA17_Chr4g0054741 | 33.973 | 521 | 294 | 11 | 69 | 576 | 22 | 505 | 1.62e-79 | 260 |
| Msa0964440 | MtrunA17_Chr1g0188871 | 36.565 | 361 | 214 | 5 | 68 | 426 | 30 | 377 | 1.34e-78 | 256 |
| Msa0964440 | MtrunA17_Chr1g0212201 | 31.977 | 516 | 312 | 12 | 68 | 576 | 21 | 504 | 6.53e-78 | 256 |
| Msa0964440 | MtrunA17_Chr1g0212291 | 33.270 | 526 | 309 | 12 | 58 | 576 | 15 | 505 | 1.50e-77 | 255 |
| Msa0964440 | MtrunA17_Chr1g0188881 | 35.171 | 381 | 230 | 6 | 48 | 426 | 19 | 384 | 2.99e-72 | 240 |
| Msa0964440 | MtrunA17_Chr2g0321971 | 37.758 | 339 | 197 | 5 | 70 | 405 | 23 | 350 | 1.25e-69 | 232 |
| Msa0964440 | MtrunA17_Chr2g0321961 | 36.176 | 340 | 200 | 7 | 72 | 407 | 25 | 351 | 9.09e-62 | 211 |
| Msa0964440 | MtrunA17_Chr7g0259731 | 34.503 | 342 | 205 | 8 | 89 | 424 | 61 | 389 | 2.07e-60 | 207 |
| Msa0964440 | MtrunA17_Chr7g0267471 | 38.390 | 323 | 186 | 5 | 84 | 405 | 42 | 352 | 2.75e-60 | 208 |
| Msa0964440 | MtrunA17_Chr4g0025591 | 31.233 | 365 | 237 | 5 | 44 | 407 | 4 | 355 | 3.08e-60 | 207 |
| Msa0964440 | MtrunA17_Chr5g0400471 | 30.769 | 481 | 262 | 13 | 140 | 586 | 3 | 446 | 2.41e-55 | 194 |
| Msa0964440 | MtrunA17_Chr4g0054771 | 29.545 | 396 | 232 | 9 | 187 | 576 | 3 | 357 | 1.86e-49 | 176 |
| Msa0964440 | MtrunA17_Chr8g0390911 | 55.224 | 134 | 42 | 3 | 7 | 139 | 4 | 120 | 1.89e-36 | 132 |
| Msa0964440 | MtrunA17_Chr6g0454771 | 70.238 | 84 | 23 | 1 | 139 | 222 | 39 | 120 | 1.19e-32 | 122 |
| Msa0964440 | MtrunA17_Chr1g0189041 | 68.966 | 58 | 16 | 1 | 162 | 219 | 1 | 56 | 1.17e-21 | 89.0 |
| Msa0964440 | MtrunA17_Chr4g0054761 | 43.478 | 92 | 40 | 1 | 69 | 148 | 22 | 113 | 1.26e-11 | 63.2 |
| Msa0964440 | MtrunA17_Chr5g0400481 | 38.961 | 77 | 43 | 1 | 71 | 143 | 40 | 116 | 2.80e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964440 | AT3G18440.1 | 60.804 | 597 | 191 | 10 | 10 | 587 | 4 | 576 | 0.0 | 695 |
| Msa0964440 | AT1G18420.1 | 56.752 | 585 | 207 | 13 | 12 | 580 | 27 | 581 | 0.0 | 621 |
| Msa0964440 | AT1G18420.2 | 59.961 | 512 | 175 | 9 | 85 | 580 | 1 | 498 | 0.0 | 597 |
| Msa0964440 | AT1G25480.1 | 53.065 | 571 | 235 | 9 | 20 | 583 | 4 | 548 | 0.0 | 558 |
| Msa0964440 | AT1G68600.1 | 53.618 | 539 | 220 | 7 | 46 | 580 | 21 | 533 | 0.0 | 538 |
| Msa0964440 | AT2G17470.1 | 53.965 | 517 | 207 | 7 | 84 | 591 | 31 | 525 | 0.0 | 528 |
| Msa0964440 | AT2G17470.2 | 53.965 | 517 | 207 | 7 | 84 | 591 | 53 | 547 | 0.0 | 528 |
| Msa0964440 | AT5G46610.1 | 32.762 | 525 | 322 | 9 | 60 | 576 | 17 | 518 | 4.63e-88 | 283 |
| Msa0964440 | AT4G17970.1 | 31.169 | 539 | 312 | 7 | 68 | 576 | 23 | 532 | 5.61e-87 | 281 |
| Msa0964440 | AT5G46600.1 | 31.204 | 548 | 347 | 13 | 35 | 576 | 2 | 525 | 3.36e-78 | 258 |
| Msa0964440 | AT4G00910.1 | 36.932 | 352 | 209 | 6 | 81 | 428 | 55 | 397 | 2.53e-74 | 246 |
| Msa0964440 | AT5G46610.2 | 29.714 | 525 | 314 | 10 | 60 | 576 | 17 | 494 | 5.91e-71 | 238 |
| Msa0964440 | AT1G08430.1 | 34.203 | 345 | 216 | 7 | 73 | 413 | 2 | 339 | 3.15e-69 | 233 |
| Msa0964440 | AT1G08440.1 | 34.731 | 334 | 210 | 5 | 73 | 405 | 2 | 328 | 1.65e-67 | 228 |
| Msa0964440 | AT5G46610.3 | 28.762 | 525 | 296 | 10 | 60 | 576 | 17 | 471 | 3.92e-66 | 224 |
| Msa0964440 | AT3G11680.2 | 39.308 | 318 | 180 | 5 | 89 | 405 | 43 | 348 | 2.24e-64 | 219 |
| Msa0964440 | AT3G11680.1 | 39.308 | 318 | 180 | 5 | 89 | 405 | 41 | 346 | 2.53e-64 | 219 |
| Msa0964440 | AT2G27240.2 | 33.913 | 345 | 213 | 6 | 70 | 413 | 6 | 336 | 7.98e-64 | 218 |
| Msa0964440 | AT2G27240.1 | 32.791 | 369 | 211 | 8 | 70 | 413 | 6 | 362 | 5.22e-61 | 211 |
Find 137 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCACAGGGTACCCAAAT+TGG | 0.162014 | 6_3:-90990782 | Msa0964440:CDS |
| CGTGCTCACCATTATATTAT+TGG | 0.169950 | 6_3:+90991006 | None:intergenic |
| GTTTAATTGTTTCAAATCTA+AGG | 0.221413 | 6_3:-90985007 | Msa0964440:CDS |
| ACTCAGGCATTGTGCATTTA+TGG | 0.225741 | 6_3:-90986615 | Msa0964440:CDS |
| ACAATGAAGGCTTATGAATA+TGG | 0.228453 | 6_3:-90987551 | Msa0964440:CDS |
| TATTGTTACGTTATTGTATC+TGG | 0.230169 | 6_3:-90987506 | Msa0964440:CDS |
| TGAGAAACATTCTCGTTTCT+TGG | 0.242314 | 6_3:+90985441 | None:intergenic |
| GTGACGGAAGGAACCCAATT+TGG | 0.242848 | 6_3:+90990768 | None:intergenic |
| AGGTGAGAAAGCAAAGTTTA+AGG | 0.271199 | 6_3:-90985076 | Msa0964440:CDS |
| AAAGGTCTAAACAGAGGATT+AGG | 0.284845 | 6_3:-90987800 | Msa0964440:CDS |
| CAGATGGGATCGTTGAGTTT+TGG | 0.286910 | 6_3:-90990600 | Msa0964440:CDS |
| ATGTGTGCATATATCCAATA+TGG | 0.288826 | 6_3:-90987400 | Msa0964440:CDS |
| GGATGAAGAAAGACATTTCT+TGG | 0.297160 | 6_3:-90985403 | Msa0964440:CDS |
| AATGCAGAGCTGTGGGAAAT+AGG | 0.303810 | 6_3:-90985471 | Msa0964440:CDS |
| TCATCATCGTCGTCGGATTC+CGG | 0.332728 | 6_3:+90990664 | None:intergenic |
| ATGAAAGGTGGCGGTGGCGG+TGG | 0.333630 | 6_3:-90990712 | Msa0964440:CDS |
| TTACCGACGAAAACATGTTT+AGG | 0.343971 | 6_3:-90985269 | Msa0964440:CDS |
| ACAAATCGGCATCCCTTTAC+CGG | 0.358676 | 6_3:-90990683 | Msa0964440:CDS |
| ATTGGGAATGCTGTCAAAAT+TGG | 0.369611 | 6_3:-90987747 | Msa0964440:CDS |
| AGATCTTCACCGGCCCATAT+TGG | 0.373138 | 6_3:+90987386 | None:intergenic |
| TAATGAACTAGCACTTTCAT+AGG | 0.375230 | 6_3:+90985176 | None:intergenic |
| ATGGTTAGCATCTTCATTGT+AGG | 0.378298 | 6_3:-90987692 | Msa0964440:intron |
| TGTTGGGAAGTACTCTGTTT+GGG | 0.380632 | 6_3:-90990440 | Msa0964440:CDS |
| AGCAGGTTTAATGATGTTAT+CGG | 0.382986 | 6_3:+90985299 | None:intergenic |
| TATTCATAAGCCTTCATTGT+TGG | 0.386844 | 6_3:+90987554 | None:intergenic |
| TTTCTTCATCCATTTGTAAG+AGG | 0.389222 | 6_3:+90985415 | None:intergenic |
| GGAGGACTTGCTTTAGCATT+GGG | 0.398305 | 6_3:-90987764 | Msa0964440:CDS |
| ATTACTCACCAATAATATAA+TGG | 0.404454 | 6_3:-90991014 | Msa0964440:five_prime_UTR |
| ATGTTGGGAAGTACTCTGTT+TGG | 0.413939 | 6_3:-90990441 | Msa0964440:CDS |
| TTACCTTCTTAAGCTCTTTG+CGG | 0.417975 | 6_3:+90985640 | None:intergenic |
| TCGTCGTCGGATTCCGGTAA+AGG | 0.418624 | 6_3:+90990670 | None:intergenic |
| GCTGAAAACACAAACTTCCT+TGG | 0.420798 | 6_3:+90990526 | None:intergenic |
| TCTCACAGGGTACCCAAATT+GGG | 0.427310 | 6_3:-90990781 | Msa0964440:CDS |
| GGCGGGGAGAGCATGGGAGA+TGG | 0.431559 | 6_3:-90990560 | Msa0964440:CDS |
| TGACGGAAGGAACCCAATTT+GGG | 0.431746 | 6_3:+90990769 | None:intergenic |
| AACAACCGTTTCCGGATGTT+GGG | 0.441325 | 6_3:-90990456 | Msa0964440:CDS |
| TTCTCAAGACCTCTTACAAA+TGG | 0.444082 | 6_3:-90985424 | Msa0964440:CDS |
| CTGTCAAAATTGGCTGGACC+TGG | 0.444488 | 6_3:-90987737 | Msa0964440:CDS |
| AGATACAATAACGTAACAAT+AGG | 0.444661 | 6_3:+90987508 | None:intergenic |
| AGCTGTGGGAAATAGGTAAC+AGG | 0.447700 | 6_3:-90985464 | Msa0964440:CDS |
| CAACAAGAACTTGTAACATC+TGG | 0.450503 | 6_3:-90985042 | Msa0964440:CDS |
| AAACAACCGTTTCCGGATGT+TGG | 0.451682 | 6_3:-90990457 | Msa0964440:CDS |
| GGGGTTTGTTTGAAGATTGT+GGG | 0.451809 | 6_3:+90990878 | None:intergenic |
| AGGGGTTTGTTTGAAGATTG+TGG | 0.454993 | 6_3:+90990877 | None:intergenic |
| TAGAAAGAAAGTTGATCTAC+TGG | 0.460004 | 6_3:+90990954 | None:intergenic |
| CGACGGTGGTGTTCGTTTCG+AGG | 0.462643 | 6_3:-90990628 | Msa0964440:CDS |
| GCAGGTTTAATGATGTTATC+GGG | 0.463058 | 6_3:+90985300 | None:intergenic |
| ACAATTTCTTCCCACTGTCC+AGG | 0.463381 | 6_3:+90987719 | None:intergenic |
| AGCGTGTGGCGGGGAGAGCA+TGG | 0.463936 | 6_3:-90990567 | Msa0964440:CDS |
| TGGAGGACTTGCTTTAGCAT+TGG | 0.464724 | 6_3:-90987765 | Msa0964440:CDS |
| ATGTATACTTTCTGAAATAC+AGG | 0.465569 | 6_3:-90986576 | Msa0964440:intron |
| TCATGTGTTATTAGTTCGGC+TGG | 0.469057 | 6_3:+90991078 | None:intergenic |
| GTGGGAAGAAATTGTAATCA+TGG | 0.470172 | 6_3:-90987711 | Msa0964440:CDS |
| TATCGTATTCAACACAGTTA+AGG | 0.478209 | 6_3:+90986922 | None:intergenic |
| GCGTAGAACTTTAGTCGCTT+CGG | 0.478291 | 6_3:+90985614 | None:intergenic |
| GCGGGGAGAGCATGGGAGAT+GGG | 0.483473 | 6_3:-90990559 | Msa0964440:CDS |
| AAGAAATCAAAGCGTGTGGC+GGG | 0.488162 | 6_3:-90990577 | Msa0964440:CDS |
| TCGTCGGTAACAACATTAGC+AGG | 0.490901 | 6_3:+90985282 | None:intergenic |
| GGCGGTGGGTATTCACAAAT+CGG | 0.497636 | 6_3:-90990697 | Msa0964440:CDS |
| AAAACTTGTCTCTTCTCCGC+TGG | 0.500088 | 6_3:+90985663 | None:intergenic |
| AGAAGATGCACCAACAAAAG+TGG | 0.500956 | 6_3:-90985211 | Msa0964440:CDS |
| TCAATGAAAGGTGGCGGTGG+CGG | 0.508318 | 6_3:-90990715 | Msa0964440:CDS |
| ACAGAGTACTTCCCAACATC+CGG | 0.511401 | 6_3:+90990445 | None:intergenic |
| TTTCCGCAAAGAGCTTAAGA+AGG | 0.514375 | 6_3:-90985643 | Msa0964440:CDS |
| ATTGTATCTGGATATCGAAC+CGG | 0.516050 | 6_3:-90987494 | Msa0964440:CDS |
| TGAAAGGTGGCGGTGGCGGT+GGG | 0.518253 | 6_3:-90990711 | Msa0964440:CDS |
| CTTGGTGCTGCTGTATCTGT+TGG | 0.524842 | 6_3:-90987428 | Msa0964440:CDS |
| TGGTGAGTAATAGAAAACTT+TGG | 0.525762 | 6_3:+90991026 | None:intergenic |
| CCATGATGCAATCTTCTCAC+AGG | 0.526047 | 6_3:-90990795 | Msa0964440:CDS |
| TTTGTGTTGTAACTTGAAAG+TGG | 0.527242 | 6_3:+90990924 | None:intergenic |
| TACTTCCCAACATCCGGAAA+CGG | 0.527916 | 6_3:+90990451 | None:intergenic |
| TTGTAACATCTGGTTGGACT+AGG | 0.528986 | 6_3:-90985032 | Msa0964440:CDS |
| TGCTGTATGAAGAAAGTCTC+CGG | 0.530779 | 6_3:+90987475 | None:intergenic |
| GCATTGTGCATTTATGGTCA+TGG | 0.531427 | 6_3:-90986609 | Msa0964440:CDS |
| GGATTAGGGACTTTATCAGC+TGG | 0.536839 | 6_3:-90987785 | Msa0964440:CDS |
| ACAAAATGTTTAGATATCCA+TGG | 0.538110 | 6_3:-90986664 | Msa0964440:CDS |
| ATACTTTGTAACATGTGTCA+TGG | 0.538847 | 6_3:-90984968 | Msa0964440:three_prime_UTR |
| TCGTTTCGAGGAATTTCAGA+TGG | 0.539987 | 6_3:-90990616 | Msa0964440:CDS |
| TTCAAGGAAACTGTGACGGA+AGG | 0.540338 | 6_3:+90990756 | None:intergenic |
| GGAATGCTGTCAAAATTGGC+TGG | 0.542934 | 6_3:-90987743 | Msa0964440:CDS |
| TTCTTGTAAATGCAGAGCTG+TGG | 0.543062 | 6_3:-90985479 | Msa0964440:CDS |
| CAAGTTCTTGTTGTTCAAGA+GGG | 0.543303 | 6_3:+90985052 | None:intergenic |
| GCTATCTGGGAGCCACCTCA+TGG | 0.545299 | 6_3:-90986692 | Msa0964440:CDS |
| GTCGTCTTTGAGTTCAGTAT+AGG | 0.545881 | 6_3:-90990400 | Msa0964440:intron |
| GCGTGTGGCGGGGAGAGCAT+GGG | 0.546326 | 6_3:-90990566 | Msa0964440:CDS |
| TACAAGCACAGAAGATGCAT+TGG | 0.549163 | 6_3:-90986823 | Msa0964440:intron |
| GTATCAAGCTTCTGATGATG+TGG | 0.550964 | 6_3:-90986877 | Msa0964440:CDS |
| TTGTGTTGTAACTTGAAAGT+GGG | 0.551479 | 6_3:+90990925 | None:intergenic |
| GGCGTAGCAACATCATTAGA+AGG | 0.551490 | 6_3:-90987335 | Msa0964440:intron |
| TGTGTGCATATATCCAATAT+GGG | 0.552034 | 6_3:-90987399 | Msa0964440:CDS |
| CGTTTCGAGGAATTTCAGAT+GGG | 0.557422 | 6_3:-90990615 | Msa0964440:CDS |
| AAAACTATATCCAACAATGA+AGG | 0.561439 | 6_3:-90987564 | Msa0964440:CDS |
| GAACTAATAACACATGAAAA+CGG | 0.562376 | 6_3:-90991072 | Msa0964440:five_prime_UTR |
| AAGAACTTGTAACATCTGGT+TGG | 0.564340 | 6_3:-90985038 | Msa0964440:CDS |
| GGGTTTGTTTGAAGATTGTG+GGG | 0.566930 | 6_3:+90990879 | None:intergenic |
| TTAACTGTGTTGAATACGAT+AGG | 0.567618 | 6_3:-90986920 | Msa0964440:CDS |
| ACAAGTTCTTGTTGTTCAAG+AGG | 0.570038 | 6_3:+90985051 | None:intergenic |
| TCTTGTAAATGCAGAGCTGT+GGG | 0.571185 | 6_3:-90985478 | Msa0964440:CDS |
| ACTAAAGTTCTACGCGAACT+CGG | 0.571792 | 6_3:-90985606 | Msa0964440:CDS |
| AAGATTATGTAGATCTTCAC+CGG | 0.577973 | 6_3:+90987376 | None:intergenic |
| TTTACAAAAGCGGAGAGATG+TGG | 0.587460 | 6_3:+90984884 | None:intergenic |
| CTCATGTCAATGAAAGGTGG+CGG | 0.587784 | 6_3:-90990721 | Msa0964440:CDS |
| ATGTCAATGAAAGGTGGCGG+TGG | 0.588834 | 6_3:-90990718 | Msa0964440:CDS |
| AAGGTCTAAACAGAGGATTA+GGG | 0.590676 | 6_3:-90987799 | Msa0964440:CDS |
| ATTGGCTGGACCTGGACAGT+GGG | 0.592025 | 6_3:-90987729 | Msa0964440:CDS |
| AATGTAGTCATCATCGTCGT+CGG | 0.597630 | 6_3:+90990657 | None:intergenic |
| AGATGTGAAGACAAAGATGC+TGG | 0.600579 | 6_3:+90985243 | None:intergenic |
| AAGTTGATCTACTGGTCAGT+TGG | 0.600935 | 6_3:+90990962 | None:intergenic |
| GGTTTGTTTGAAGATTGTGG+GGG | 0.602599 | 6_3:+90990880 | None:intergenic |
| GAAACGAACACCACCGTCGT+CGG | 0.604967 | 6_3:+90990632 | None:intergenic |
| GTTTGTTTGAAGATTGTGGG+GGG | 0.607951 | 6_3:+90990881 | None:intergenic |
| TTTATGGTCATGGCTATGCA+TGG | 0.621553 | 6_3:-90986599 | Msa0964440:CDS |
| GAAGAAATCAAAGCGTGTGG+CGG | 0.622696 | 6_3:-90990578 | Msa0964440:CDS |
| GGCTAGGCTACAAAACCTTG+TGG | 0.623864 | 6_3:-90985115 | Msa0964440:CDS |
| TTAGGGACTTTATCAGCTGG+AGG | 0.624926 | 6_3:-90987782 | Msa0964440:CDS |
| CATGATGCAATCTTCTCACA+GGG | 0.626037 | 6_3:-90990794 | Msa0964440:CDS |
| TAACTGTGTTGAATACGATA+GGG | 0.627098 | 6_3:-90986919 | Msa0964440:CDS |
| TGCATATATCCAATATGGGC+CGG | 0.627717 | 6_3:-90987395 | Msa0964440:CDS |
| AATTGGCTGGACCTGGACAG+TGG | 0.630767 | 6_3:-90987730 | Msa0964440:CDS |
| TCATGGAAAGATCTAAATGT+TGG | 0.633044 | 6_3:-90984951 | Msa0964440:three_prime_UTR |
| ATGACTACATTCGCCGACGA+CGG | 0.636610 | 6_3:-90990645 | Msa0964440:CDS |
| TTGGAAGAAATCAAAGCGTG+TGG | 0.640709 | 6_3:-90990581 | Msa0964440:CDS |
| TTAAAGTAAGTGGAGCACTC+AGG | 0.643732 | 6_3:-90986631 | Msa0964440:CDS |
| AGAAATCAAAGCGTGTGGCG+GGG | 0.644981 | 6_3:-90990576 | Msa0964440:CDS |
| TCTGATGATGTGGTTTACAG+CGG | 0.646018 | 6_3:-90986867 | Msa0964440:CDS |
| GCAGGAGCAACTCTTAGCAA+AGG | 0.647124 | 6_3:-90987818 | Msa0964440:intron |
| AGATGGGTGTGTCTGATCCA+AGG | 0.649272 | 6_3:-90990543 | Msa0964440:CDS |
| TGTGTTGTAACTTGAAAGTG+GGG | 0.649348 | 6_3:+90990926 | None:intergenic |
| AAACTCATGTCAATGAAAGG+TGG | 0.655476 | 6_3:-90990724 | Msa0964440:CDS |
| ATTCTTCAAAAGAATCCACA+AGG | 0.658164 | 6_3:+90985100 | None:intergenic |
| CTACTGGTCAGTTGGTAATG+CGG | 0.663387 | 6_3:+90990970 | None:intergenic |
| AATAGGTGATCAAGAACACA+CGG | 0.669501 | 6_3:+90987525 | None:intergenic |
| ACTACATTCGCCGACGACGG+TGG | 0.670003 | 6_3:-90990642 | Msa0964440:CDS |
| CTTAGCAAAGGTCTAAACAG+AGG | 0.672271 | 6_3:-90987806 | Msa0964440:CDS |
| ATGGTGAGCACGACTAAACG+AGG | 0.681802 | 6_3:-90990995 | Msa0964440:five_prime_UTR |
| GTGTTGTAACTTGAAAGTGG+GGG | 0.700678 | 6_3:+90990927 | None:intergenic |
| CCTGTGAGAAGATTGCATCA+TGG | 0.710798 | 6_3:+90990795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATAAATAAATAA+AGG | - | chr6_3:90986933-90986952 | Msa0964440:CDS | 0.0% |
| !!! | TATTTTATCAAATTATTACA+CGG | - | chr6_3:90985700-90985719 | Msa0964440:intron | 10.0% |
| !! | GAATATTATATAATATATGT+AGG | - | chr6_3:90985888-90985907 | Msa0964440:intron | 10.0% |
| !! | ATATTATATAATATATGTAG+GGG | - | chr6_3:90985890-90985909 | Msa0964440:intron | 10.0% |
| !!! | TATTTTATTTTTGCTTATAT+AGG | - | chr6_3:90986232-90986251 | Msa0964440:intron | 10.0% |
| !! | TATTATTTGTTTATTTAAAG+TGG | - | chr6_3:90986325-90986344 | Msa0964440:intron | 10.0% |
| !! | TTTGAAAACTAAAAAATAAT+CGG | + | chr6_3:90986643-90986662 | None:intergenic | 10.0% |
| !! | ATGAAGAAATAAATAAATAA+AGG | - | chr6_3:90986845-90986864 | Msa0964440:CDS | 10.0% |
| !! | TTACTTATTTATTTATTTAC+TGG | + | chr6_3:90986887-90986906 | None:intergenic | 10.0% |
| !! | GTAAATAAATAAATAAGTAA+AGG | - | chr6_3:90986887-90986906 | Msa0964440:CDS | 10.0% |
| !!! | ATTAAAATTTACAACATTTT+AGG | - | chr6_3:90988685-90988704 | Msa0964440:intron | 10.0% |
| !!! | ATTTTATCAAATTATTACAC+GGG | - | chr6_3:90985701-90985720 | Msa0964440:intron | 15.0% |
| !! | AATGCATCTAATTTAAATTA+GGG | + | chr6_3:90986195-90986214 | None:intergenic | 15.0% |
| !! | CTAAAAATAGAAACAAATTT+CGG | + | chr6_3:90986440-90986459 | None:intergenic | 15.0% |
| !! | AAATTAAACAACATTAACAT+AGG | + | chr6_3:90987039-90987058 | None:intergenic | 15.0% |
| !! | TCAATTTAATAGTATTCAAT+TGG | - | chr6_3:90987159-90987178 | Msa0964440:intron | 15.0% |
| !!! | ATAAAATCATTTCAAGTTTA+AGG | + | chr6_3:90987464-90987483 | None:intergenic | 15.0% |
| !! | TTTCACTTATAAACAATAAT+TGG | - | chr6_3:90988109-90988128 | Msa0964440:intron | 15.0% |
| !! | AAAAATTATGTTAAAGTAAG+TGG | - | chr6_3:90989324-90989343 | Msa0964440:intron | 15.0% |
| !! | TACTTATTATGAAGTATATA+CGG | + | chr6_3:90989915-90989934 | None:intergenic | 15.0% |
| !! | AAATTTAAATACTAATCAAG+TGG | + | chr6_3:90990202-90990221 | None:intergenic | 15.0% |
| !! | ATTACTCACCAATAATATAA+TGG | - | chr6_3:90984951-90984970 | Msa0964440:three_prime_UTR | 20.0% |
| !! | AATCATATATATGTCTGTTA+CGG | + | chr6_3:90985666-90985685 | None:intergenic | 20.0% |
| !! | CAATGCATCTAATTTAAATT+AGG | + | chr6_3:90986196-90986215 | None:intergenic | 20.0% |
| !! | ATTGTGAATGTTTCTTTATT+TGG | + | chr6_3:90986282-90986301 | None:intergenic | 20.0% |
| !!! | TTAGTTTTCAAAATTACAAG+TGG | - | chr6_3:90986651-90986670 | Msa0964440:CDS | 20.0% |
| !!! | TTTTATATAAAAAAGTGGGA+AGG | - | chr6_3:90986682-90986701 | Msa0964440:CDS | 20.0% |
| !! | AAATACTGCTAAATTATCTT+CGG | + | chr6_3:90987140-90987159 | None:intergenic | 20.0% |
| !!! | CAAACTGGTTTTATTTTATT+AGG | - | chr6_3:90987600-90987619 | Msa0964440:intron | 20.0% |
| !!! | TTATTTTATTAGGTTGACTT+AGG | - | chr6_3:90987610-90987629 | Msa0964440:intron | 20.0% |
| !! | TTCTATCAAAAACCATATTT+GGG | - | chr6_3:90987747-90987766 | Msa0964440:CDS | 20.0% |
| !! | TAGAAAAGTTAGTAGAAAAT+AGG | + | chr6_3:90987928-90987947 | None:intergenic | 20.0% |
| !! | TAGATGGTTATTACAAATTA+AGG | + | chr6_3:90988938-90988957 | None:intergenic | 20.0% |
| !! | AAACTAAATGTTATAGTAGA+TGG | + | chr6_3:90988954-90988973 | None:intergenic | 20.0% |
| !!! | TCTACTATAACATTTAGTTT+TGG | - | chr6_3:90988954-90988973 | Msa0964440:intron | 20.0% |
| !!! | ATAACTTTAAGTTTCTTTTC+AGG | - | chr6_3:90989005-90989024 | Msa0964440:intron | 20.0% |
| !!! | ACTTTAACATAATTTTTCCA+TGG | + | chr6_3:90989321-90989340 | None:intergenic | 20.0% |
| !! | ATTTGTACTTTACAATCAAT+AGG | + | chr6_3:90989673-90989692 | None:intergenic | 20.0% |
| !! | CAATTATATCATTATGTATG+TGG | - | chr6_3:90989868-90989887 | Msa0964440:intron | 20.0% |
| !! | ATACATGTATCTTTACTATT+TGG | - | chr6_3:90990071-90990090 | Msa0964440:intron | 20.0% |
| !! | GTTTAATTGTTTCAAATCTA+AGG | - | chr6_3:90990958-90990977 | Msa0964440:five_prime_UTR | 20.0% |
| !!! | GTTTTCATGTGTTATTAGTT+CGG | + | chr6_3:90984894-90984913 | None:intergenic | 25.0% |
| ! | GAACTAATAACACATGAAAA+CGG | - | chr6_3:90984893-90984912 | Msa0964440:three_prime_UTR | 25.0% |
| !!! | TGAGTTTTTCCTTTTTTTCA+AGG | + | chr6_3:90985228-90985247 | None:intergenic | 25.0% |
| !! | TTATTCCATATATTTGAGAC+CGG | + | chr6_3:90985823-90985842 | None:intergenic | 25.0% |
| ! | TTATATAATATATGTAGGGG+CGG | - | chr6_3:90985893-90985912 | Msa0964440:intron | 25.0% |
| ! | GTATCCTTAAAAATGTCTTA+AGG | + | chr6_3:90986041-90986060 | None:intergenic | 25.0% |
| !!! | TTATGTCTTGATAGTTTGTT+TGG | + | chr6_3:90986525-90986544 | None:intergenic | 25.0% |
| ! | TTAATTAGCAAATTTGACCA+TGG | - | chr6_3:90986992-90987011 | Msa0964440:intron | 25.0% |
| ! | TAATAGTATTCAATTGGTGA+TGG | - | chr6_3:90987165-90987184 | Msa0964440:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr6_3:90987746-90987765 | Msa0964440:CDS | 25.0% |
| !! | TCTACTAACTTTTCTACTAT+AGG | - | chr6_3:90987932-90987951 | Msa0964440:intron | 25.0% |
| ! | AAAACTATATCCAACAATGA+AGG | - | chr6_3:90988401-90988420 | Msa0964440:intron | 25.0% |
| ! | AGATACAATAACGTAACAAT+AGG | + | chr6_3:90988460-90988479 | None:intergenic | 25.0% |
| ! | TATTGTTACGTTATTGTATC+TGG | - | chr6_3:90988459-90988478 | Msa0964440:intron | 25.0% |
| ! | ATAAGCAAGAAAAGTCTATT+GGG | + | chr6_3:90988661-90988680 | None:intergenic | 25.0% |
| ! | AATAAGCAAGAAAAGTCTAT+TGG | + | chr6_3:90988662-90988681 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr6_3:90988782-90988801 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr6_3:90988911-90988930 | Msa0964440:intron | 25.0% |
| ! | CTGATAACTTAAGTAGAAAA+AGG | + | chr6_3:90989173-90989192 | None:intergenic | 25.0% |
| ! | ACAAAATGTTTAGATATCCA+TGG | - | chr6_3:90989301-90989320 | Msa0964440:intron | 25.0% |
| !!! | ATGTATACTTTCTGAAATAC+AGG | - | chr6_3:90989389-90989408 | Msa0964440:intron | 25.0% |
| !!! | TTACTTCAATTTTTTCGTGT+CGG | - | chr6_3:90989466-90989485 | Msa0964440:intron | 25.0% |
| !! | ATCTAACCATTTTGCTTTAT+AGG | - | chr6_3:90989632-90989651 | Msa0964440:intron | 25.0% |
| !! | GTTTTTCCTATAAAGCAAAA+TGG | + | chr6_3:90989641-90989660 | None:intergenic | 25.0% |
| ! | ATCAAATTCAAGGAGATATA+TGG | - | chr6_3:90989763-90989782 | Msa0964440:intron | 25.0% |
| !! | TTGTGATAGTAGTTTGTAAT+AGG | - | chr6_3:90989840-90989859 | Msa0964440:intron | 25.0% |
| !!! | ATCACTTTTGATTGAATTTG+TGG | - | chr6_3:90990829-90990848 | Msa0964440:five_prime_UTR | 25.0% |
| TGGTGAGTAATAGAAAACTT+TGG | + | chr6_3:90984942-90984961 | None:intergenic | 30.0% | |
| ! | TAGAAAGAAAGTTGATCTAC+TGG | + | chr6_3:90985014-90985033 | None:intergenic | 30.0% |
| TTGTGTTGTAACTTGAAAGT+GGG | + | chr6_3:90985043-90985062 | None:intergenic | 30.0% | |
| TTTGTGTTGTAACTTGAAAG+TGG | + | chr6_3:90985044-90985063 | None:intergenic | 30.0% | |
| TGGAGATGAAAAATGAAAGA+GGG | + | chr6_3:90985110-90985129 | None:intergenic | 30.0% | |
| TTGGAGATGAAAAATGAAAG+AGG | + | chr6_3:90985111-90985130 | None:intergenic | 30.0% | |
| !!! | ATGAGTTTTTTGAGGAATCT+GGG | + | chr6_3:90985148-90985167 | None:intergenic | 30.0% |
| !!! | TTTTTTCAAGGAAACTGTGA+CGG | + | chr6_3:90985216-90985235 | None:intergenic | 30.0% |
| TCACAGTTTCCTTGAAAAAA+AGG | - | chr6_3:90985216-90985235 | Msa0964440:CDS | 30.0% | |
| GAAAAACTCATGTCAATGAA+AGG | - | chr6_3:90985238-90985257 | Msa0964440:CDS | 30.0% | |
| ! | TTTTCTTAAACAACCGTTTC+CGG | - | chr6_3:90985501-90985520 | Msa0964440:CDS | 30.0% |
| !!! | CACTGTTGTAGTGTTTTAAT+CGG | - | chr6_3:90985749-90985768 | Msa0964440:intron | 30.0% |
| ! | TAAGATGAATTCTAGCTACT+AGG | - | chr6_3:90985949-90985968 | Msa0964440:intron | 30.0% |
| ! | AGTGCCTTAAGACATTTTTA+AGG | - | chr6_3:90986034-90986053 | Msa0964440:intron | 30.0% |
| TAGAAACAAATTTCGGTTCA+TGG | + | chr6_3:90986433-90986452 | None:intergenic | 30.0% | |
| !! | AATAGTGTGAGTTAGTTTGT+TGG | + | chr6_3:90986493-90986512 | None:intergenic | 30.0% |
| TGAAAAACACAGTCAATCAA+TGG | - | chr6_3:90986568-90986587 | Msa0964440:intron | 30.0% | |
| !! | ATCACAACTTTTGAGAATGA+TGG | - | chr6_3:90986731-90986750 | Msa0964440:intron | 30.0% |
| TAATCCAATTGTGAGAATGA+TGG | - | chr6_3:90986760-90986779 | Msa0964440:intron | 30.0% | |
| ! | TTTAATTTAGCTGCATATCG+CGG | - | chr6_3:90987051-90987070 | Msa0964440:intron | 30.0% |
| ! | CAAACTCGATTTGTAAATTG+AGG | + | chr6_3:90987426-90987445 | None:intergenic | 30.0% |
| ! | AAGCTTGATGAAAGGTTTTT+AGG | + | chr6_3:90987643-90987662 | None:intergenic | 30.0% |
| AACCATTCGAAAAGATTTAG+AGG | + | chr6_3:90987786-90987805 | None:intergenic | 30.0% | |
| ! | TTTTCGAATGGTTTCTCTAA+TGG | - | chr6_3:90987793-90987812 | Msa0964440:CDS | 30.0% |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr6_3:90987803-90987822 | Msa0964440:CDS | 30.0% |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr6_3:90987861-90987880 | None:intergenic | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | - | chr6_3:90987862-90987881 | Msa0964440:intron | 30.0% | |
| TAGTAGAAAATAGGCTTAGA+TGG | + | chr6_3:90987919-90987938 | None:intergenic | 30.0% | |
| AGGTATAAGCTAAGGAAAAA+AGG | + | chr6_3:90988329-90988348 | None:intergenic | 30.0% | |
| GAAAAACAAGGTATAAGCTA+AGG | + | chr6_3:90988337-90988356 | None:intergenic | 30.0% | |
| AGCATACTATCAGAAAAACA+AGG | + | chr6_3:90988349-90988368 | None:intergenic | 30.0% | |
| ! | TAGTATGCTATGTGATTTGT+AGG | - | chr6_3:90988360-90988379 | Msa0964440:intron | 30.0% |
| !! | TGGATATAGTTTTGCATAAG+TGG | + | chr6_3:90988394-90988413 | None:intergenic | 30.0% |
| TATTCATAAGCCTTCATTGT+TGG | + | chr6_3:90988414-90988433 | None:intergenic | 30.0% | |
| ACAATGAAGGCTTATGAATA+TGG | - | chr6_3:90988414-90988433 | Msa0964440:intron | 30.0% | |
| ATGTGTGCATATATCCAATA+TGG | - | chr6_3:90988565-90988584 | Msa0964440:intron | 30.0% | |
| TGTGTGCATATATCCAATAT+GGG | - | chr6_3:90988566-90988585 | Msa0964440:intron | 30.0% | |
| AAGATTATGTAGATCTTCAC+CGG | + | chr6_3:90988592-90988611 | None:intergenic | 30.0% | |
| CTTGTTGCAAAAAATTTCAC+AGG | - | chr6_3:90988609-90988628 | Msa0964440:intron | 30.0% | |
| TTACAAATTAAGGTCCTGTT+TGG | + | chr6_3:90988928-90988947 | None:intergenic | 30.0% | |
| TATCGTATTCAACACAGTTA+AGG | + | chr6_3:90989046-90989065 | None:intergenic | 30.0% | |
| TTAACTGTGTTGAATACGAT+AGG | - | chr6_3:90989045-90989064 | Msa0964440:intron | 30.0% | |
| TAACTGTGTTGAATACGATA+GGG | - | chr6_3:90989046-90989065 | Msa0964440:intron | 30.0% | |
| ! | TGATACGTAAGAATTTTCGA+TGG | + | chr6_3:90989074-90989093 | None:intergenic | 30.0% |
| ! | AGCAAAATGGTTAGATTTTG+TGG | + | chr6_3:90989628-90989647 | None:intergenic | 30.0% |
| CTTTACAATCAATAGGAACT+GGG | + | chr6_3:90989666-90989685 | None:intergenic | 30.0% | |
| ACTTTACAATCAATAGGAAC+TGG | + | chr6_3:90989667-90989686 | None:intergenic | 30.0% | |
| TCCTTGAATTTGATATGAAG+GGG | + | chr6_3:90989757-90989776 | None:intergenic | 30.0% | |
| CTCCTTGAATTTGATATGAA+GGG | + | chr6_3:90989758-90989777 | None:intergenic | 30.0% | |
| TCTCCTTGAATTTGATATGA+AGG | + | chr6_3:90989759-90989778 | None:intergenic | 30.0% | |
| TAAGTAACTAGAATACTGCT+AGG | - | chr6_3:90989929-90989948 | Msa0964440:intron | 30.0% | |
| TAGTAAACGTGTATTTGCAT+AGG | + | chr6_3:90990258-90990277 | None:intergenic | 30.0% | |
| ! | AAACCTCCTTTTTGTGAAAT+AGG | - | chr6_3:90990277-90990296 | Msa0964440:intron | 30.0% |
| CGGTAACAAAGTTAAAAAGA+TGG | - | chr6_3:90990379-90990398 | Msa0964440:intron | 30.0% | |
| GTTAAAAAGATGGAGAAACT+AGG | - | chr6_3:90990389-90990408 | Msa0964440:intron | 30.0% | |
| TTTCTTCATCCATTTGTAAG+AGG | + | chr6_3:90990553-90990572 | None:intergenic | 30.0% | |
| AGTTAGAGTTCCAAAAAGTT+GGG | - | chr6_3:90990625-90990644 | Msa0964440:CDS | 30.0% | |
| AGCAGGTTTAATGATGTTAT+CGG | + | chr6_3:90990669-90990688 | None:intergenic | 30.0% | |
| ! | TTTCCTAAACATGTTTTCGT+CGG | + | chr6_3:90990702-90990721 | None:intergenic | 30.0% |
| !! | TTTGATTCTTCCACTTTTGT+TGG | + | chr6_3:90990767-90990786 | None:intergenic | 30.0% |
| TAATGAACTAGCACTTTCAT+AGG | + | chr6_3:90990792-90990811 | None:intergenic | 30.0% | |
| !! | TTTTGATTGAATTTGTGGCT+AGG | - | chr6_3:90990834-90990853 | Msa0964440:five_prime_UTR | 30.0% |
| ATTCTTCAAAAGAATCCACA+AGG | + | chr6_3:90990868-90990887 | None:intergenic | 30.0% | |
| !! | GTGGATTCTTTTGAAGAATT+AGG | - | chr6_3:90990869-90990888 | Msa0964440:five_prime_UTR | 30.0% |
| ATACTTTGTAACATGTGTCA+TGG | - | chr6_3:90990997-90991016 | Msa0964440:five_prime_UTR | 30.0% | |
| TCATGGAAAGATCTAAATGT+TGG | - | chr6_3:90991014-90991033 | Msa0964440:five_prime_UTR | 30.0% | |
| CGTGCTCACCATTATATTAT+TGG | + | chr6_3:90984962-90984981 | None:intergenic | 35.0% | |
| TGTGTTGTAACTTGAAAGTG+GGG | + | chr6_3:90985042-90985061 | None:intergenic | 35.0% | |
| GGAGATGAAAAATGAAAGAG+GGG | + | chr6_3:90985109-90985128 | None:intergenic | 35.0% | |
| !!! | TGAGTTTTTTGAGGAATCTG+GGG | + | chr6_3:90985147-90985166 | None:intergenic | 35.0% |
| !!! | GATGAGTTTTTTGAGGAATC+TGG | + | chr6_3:90985149-90985168 | None:intergenic | 35.0% |
| !!! | TCATGGTGATGAGTTTTTTG+AGG | + | chr6_3:90985156-90985175 | None:intergenic | 35.0% |
| AAACTCATGTCAATGAAAGG+TGG | - | chr6_3:90985241-90985260 | Msa0964440:CDS | 35.0% | |
| ! | TTTGTGTTTTCAGCGAAGAT+GGG | - | chr6_3:90985448-90985467 | Msa0964440:CDS | 35.0% |
| ! | AGACATTCGATCAGAAGTAT+CGG | + | chr6_3:90985627-90985646 | None:intergenic | 35.0% |
| TATCAAATTATTACACGGGC+CGG | - | chr6_3:90985705-90985724 | Msa0964440:intron | 35.0% | |
| AAACACTACAACAGTGTCAT+TGG | + | chr6_3:90985745-90985764 | None:intergenic | 35.0% | |
| AATGCTAATAAGTGCCCTAA+GGG | + | chr6_3:90986171-90986190 | None:intergenic | 35.0% | |
| AAATGCTAATAAGTGCCCTA+AGG | + | chr6_3:90986172-90986191 | None:intergenic | 35.0% | |
| TTGCTTATATAGGAGACTAG+AGG | - | chr6_3:90986242-90986261 | Msa0964440:intron | 35.0% | |
| ATCACCATCATTCTCACAAT+TGG | + | chr6_3:90986767-90986786 | None:intergenic | 35.0% | |
| ATTAGCAAATTTGACCATGG+TGG | - | chr6_3:90986995-90987014 | Msa0964440:intron | 35.0% | |
| TTAGCAAATTTGACCATGGT+GGG | - | chr6_3:90986996-90987015 | Msa0964440:intron | 35.0% | |
| !! | CGGATTATTCTAGAATCACT+TGG | - | chr6_3:90987071-90987090 | Msa0964440:intron | 35.0% |
| GAAAATATGCTCTTCAACCA+TGG | - | chr6_3:90987096-90987115 | Msa0964440:intron | 35.0% | |
| ACAATCTTCACCTTACAAGT+TGG | - | chr6_3:90987382-90987401 | Msa0964440:CDS | 35.0% | |
| GATCTATTCAAGCCATATGT+CGG | + | chr6_3:90987528-90987547 | None:intergenic | 35.0% | |
| GAAGTTGACACTTTACAAAC+TGG | - | chr6_3:90987585-90987604 | Msa0964440:CDS | 35.0% | |
| !!! | GATGAAAGGTTTTTAGGTTC+TGG | + | chr6_3:90987637-90987656 | None:intergenic | 35.0% |
| CTTTCATCAAGCTTTCCATT+GGG | - | chr6_3:90987649-90987668 | Msa0964440:intron | 35.0% | |
| ! | TGGTTTTTGATAGAACGCTA+TGG | + | chr6_3:90987742-90987761 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr6_3:90987774-90987793 | None:intergenic | 35.0% | |
| ! | GACCTCTAAATCTTTTCGAA+TGG | - | chr6_3:90987781-90987800 | Msa0964440:CDS | 35.0% |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr6_3:90987858-90987877 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr6_3:90987914-90987933 | None:intergenic | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr6_3:90987991-90988010 | None:intergenic | 35.0% | |
| AAAGGTCTAAACAGAGGATT+AGG | - | chr6_3:90988165-90988184 | Msa0964440:intron | 35.0% | |
| AAGGTCTAAACAGAGGATTA+GGG | - | chr6_3:90988166-90988185 | Msa0964440:intron | 35.0% | |
| ATTGGGAATGCTGTCAAAAT+TGG | - | chr6_3:90988218-90988237 | Msa0964440:intron | 35.0% | |
| GTGGGAAGAAATTGTAATCA+TGG | - | chr6_3:90988254-90988273 | Msa0964440:intron | 35.0% | |
| ATGGTTAGCATCTTCATTGT+AGG | - | chr6_3:90988273-90988292 | Msa0964440:intron | 35.0% | |
| AATAGGTGATCAAGAACACA+CGG | + | chr6_3:90988443-90988462 | None:intergenic | 35.0% | |
| ATTGTATCTGGATATCGAAC+CGG | - | chr6_3:90988471-90988490 | Msa0964440:intron | 35.0% | |
| ! | AGATTTTTGCTCATTGCTCT+TGG | - | chr6_3:90988519-90988538 | Msa0964440:intron | 35.0% |
| ! | TACAACATTTTAGGCCTGTT+TGG | - | chr6_3:90988694-90988713 | Msa0964440:intron | 35.0% |
| ! | ACAACATTTTAGGCCTGTTT+GGG | - | chr6_3:90988695-90988714 | Msa0964440:intron | 35.0% |
| !! | GAAGATGAGTTTTGCTATCT+GGG | - | chr6_3:90989260-90989279 | Msa0964440:intron | 35.0% |
| ! | AACATTTTGTAACGACCATG+AGG | + | chr6_3:90989291-90989310 | None:intergenic | 35.0% |
| CATAGAAAATGTTGCTACAC+AGG | + | chr6_3:90989417-90989436 | None:intergenic | 35.0% | |
| CAAGAATCAAACGTCATTTC+TGG | + | chr6_3:90989570-90989589 | None:intergenic | 35.0% | |
| CAGAAATGACGTTTGATTCT+TGG | - | chr6_3:90989568-90989587 | Msa0964440:intron | 35.0% | |
| CCTTGAATTTGATATGAAGG+GGG | + | chr6_3:90989756-90989775 | None:intergenic | 35.0% | |
| GTCTTAATGGTTTCCTGTAT+AGG | - | chr6_3:90989816-90989835 | Msa0964440:intron | 35.0% | |
| CTACTATCACAATCCTATAC+AGG | + | chr6_3:90989832-90989851 | None:intergenic | 35.0% | |
| ACCACAGATTGCAGAAAATA+GGG | - | chr6_3:90989977-90989996 | Msa0964440:intron | 35.0% | |
| GCTTAGTACTAAATCACGTA+TGG | - | chr6_3:90990039-90990058 | Msa0964440:intron | 35.0% | |
| TAGTACTAAATCACGTATGG+CGG | - | chr6_3:90990042-90990061 | Msa0964440:intron | 35.0% | |
| GCTTAGTACTAAATCACGTA+TGG | - | chr6_3:90990039-90990058 | Msa0964440:intron | 35.0% | |
| TAGTACTAAATCACGTATGG+CGG | - | chr6_3:90990042-90990061 | Msa0964440:intron | 35.0% | |
| CGGATATATATTAGCGCTAT+AGG | + | chr6_3:90990156-90990175 | None:intergenic | 35.0% | |
| !! | AAAGGAGTGTTGTCAAATAG+CGG | + | chr6_3:90990176-90990195 | None:intergenic | 35.0% |
| ATACTAATCAAGTGGTGCAA+AGG | + | chr6_3:90990194-90990213 | None:intergenic | 35.0% | |
| TTACCTTCTTAAGCTCTTTG+CGG | + | chr6_3:90990328-90990347 | None:intergenic | 35.0% | |
| TGAGAAACATTCTCGTTTCT+TGG | + | chr6_3:90990527-90990546 | None:intergenic | 35.0% | |
| TTCTCAAGACCTCTTACAAA+TGG | - | chr6_3:90990541-90990560 | Msa0964440:CDS | 35.0% | |
| GGATGAAGAAAGACATTTCT+TGG | - | chr6_3:90990562-90990581 | Msa0964440:CDS | 35.0% | |
| CAGTTAGAGTTCCAAAAAGT+TGG | - | chr6_3:90990624-90990643 | Msa0964440:CDS | 35.0% | |
| ! | AGACTTTCTTCCCAACTTTT+TGG | + | chr6_3:90990638-90990657 | None:intergenic | 35.0% |
| GCAGGTTTAATGATGTTATC+GGG | + | chr6_3:90990668-90990687 | None:intergenic | 35.0% | |
| TTACCGACGAAAACATGTTT+AGG | - | chr6_3:90990696-90990715 | Msa0964440:CDS | 35.0% | |
| AGGTGAGAAAGCAAAGTTTA+AGG | - | chr6_3:90990889-90990908 | Msa0964440:five_prime_UTR | 35.0% | |
| !! | CAAGTTCTTGTTGTTCAAGA+GGG | + | chr6_3:90990916-90990935 | None:intergenic | 35.0% |
| !! | ACAAGTTCTTGTTGTTCAAG+AGG | + | chr6_3:90990917-90990936 | None:intergenic | 35.0% |
| CAACAAGAACTTGTAACATC+TGG | - | chr6_3:90990923-90990942 | Msa0964440:five_prime_UTR | 35.0% | |
| AAGAACTTGTAACATCTGGT+TGG | - | chr6_3:90990927-90990946 | Msa0964440:five_prime_UTR | 35.0% | |
| ! | AAGTTGATCTACTGGTCAGT+TGG | + | chr6_3:90985006-90985025 | None:intergenic | 40.0% |
| GTGTTGTAACTTGAAAGTGG+GGG | + | chr6_3:90985041-90985060 | None:intergenic | 40.0% | |
| GTTTGTTTGAAGATTGTGGG+GGG | + | chr6_3:90985087-90985106 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGAAGATTGTGG+GGG | + | chr6_3:90985088-90985107 | None:intergenic | 40.0% |
| ! | GGGTTTGTTTGAAGATTGTG+GGG | + | chr6_3:90985089-90985108 | None:intergenic | 40.0% |
| ! | GGGGTTTGTTTGAAGATTGT+GGG | + | chr6_3:90985090-90985109 | None:intergenic | 40.0% |
| ! | AGGGGTTTGTTTGAAGATTG+TGG | + | chr6_3:90985091-90985110 | None:intergenic | 40.0% |
| !!! | GAATCTGGGGAAGTTTTTTG+AGG | + | chr6_3:90985134-90985153 | None:intergenic | 40.0% |
| CATGATGCAATCTTCTCACA+GGG | - | chr6_3:90985171-90985190 | Msa0964440:CDS | 40.0% | |
| AATGTAGTCATCATCGTCGT+CGG | + | chr6_3:90985311-90985330 | None:intergenic | 40.0% | |
| TCGTTTCGAGGAATTTCAGA+TGG | - | chr6_3:90985349-90985368 | Msa0964440:CDS | 40.0% | |
| CGTTTCGAGGAATTTCAGAT+GGG | - | chr6_3:90985350-90985369 | Msa0964440:CDS | 40.0% | |
| TTGGAAGAAATCAAAGCGTG+TGG | - | chr6_3:90985384-90985403 | Msa0964440:CDS | 40.0% | |
| GCTGAAAACACAAACTTCCT+TGG | + | chr6_3:90985442-90985461 | None:intergenic | 40.0% | |
| ! | GTTTGTGTTTTCAGCGAAGA+TGG | - | chr6_3:90985447-90985466 | Msa0964440:CDS | 40.0% |
| !! | ATGTTGGGAAGTACTCTGTT+TGG | - | chr6_3:90985524-90985543 | Msa0964440:CDS | 40.0% |
| !! | TGTTGGGAAGTACTCTGTTT+GGG | - | chr6_3:90985525-90985544 | Msa0964440:CDS | 40.0% |
| ! | GTCGTCTTTGAGTTCAGTAT+AGG | - | chr6_3:90985565-90985584 | Msa0964440:CDS | 40.0% |
| ! | ATTGGTGGCAATAATCTCAC+CGG | + | chr6_3:90985727-90985746 | None:intergenic | 40.0% |
| TCCATCCGGTCTCAAATATA+TGG | - | chr6_3:90985815-90985834 | Msa0964440:intron | 40.0% | |
| ! | TCCATATATTTGAGACCGGA+TGG | + | chr6_3:90985819-90985838 | None:intergenic | 40.0% |
| GTGAATAACTGTAGTGTCAG+AGG | + | chr6_3:90985927-90985946 | None:intergenic | 40.0% | |
| ACACTCAATGCATCGAGAAT+TGG | + | chr6_3:90986104-90986123 | None:intergenic | 40.0% | |
| !! | AGTTCTTAAAGAGTGCCCTT+AGG | - | chr6_3:90986153-90986172 | Msa0964440:intron | 40.0% |
| !! | GTTCTTAAAGAGTGCCCTTA+GGG | - | chr6_3:90986154-90986173 | Msa0964440:intron | 40.0% |
| ! | AACAATTTTCTGTCCCACCA+TGG | + | chr6_3:90987012-90987031 | None:intergenic | 40.0% |
| ! | ATCTTCGGTGTATCAAACCT+GGG | + | chr6_3:90987125-90987144 | None:intergenic | 40.0% |
| ! | TATCTTCGGTGTATCAAACC+TGG | + | chr6_3:90987126-90987145 | None:intergenic | 40.0% |
| !! | ATTGGTGATGGTGAAATCAC+AGG | - | chr6_3:90987177-90987196 | Msa0964440:intron | 40.0% |
| CGCTTTACAACCAACTTGTA+AGG | + | chr6_3:90987395-90987414 | None:intergenic | 40.0% | |
| CATATGACAAGTCCGACATA+TGG | - | chr6_3:90987513-90987532 | Msa0964440:CDS | 40.0% | |
| CCAATGGAAAGCTTGATGAA+AGG | + | chr6_3:90987651-90987670 | None:intergenic | 40.0% | |
| CCTTTCATCAAGCTTTCCAT+TGG | - | chr6_3:90987648-90987667 | Msa0964440:intron | 40.0% | |
| ! | TGTTGTTGTTGTTGACCCAA+TGG | + | chr6_3:90987667-90987686 | None:intergenic | 40.0% |
| ! | CAATGAGTTGGACCCAAATA+TGG | + | chr6_3:90987762-90987781 | None:intergenic | 40.0% |
| TCTTCTTACAACGGCATCTA+CGG | - | chr6_3:90987871-90987890 | Msa0964440:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr6_3:90987997-90988016 | None:intergenic | 40.0% | |
| ! | TACTTGTCTTGTTGACCCAA+TGG | + | chr6_3:90988077-90988096 | None:intergenic | 40.0% |
| TGGTCGCAATATATTTGTGC+AGG | - | chr6_3:90988129-90988148 | Msa0964440:intron | 40.0% | |
| CTTAGCAAAGGTCTAAACAG+AGG | - | chr6_3:90988159-90988178 | Msa0964440:intron | 40.0% | |
| TGCTGTATGAAGAAAGTCTC+CGG | + | chr6_3:90988493-90988512 | None:intergenic | 40.0% | |
| TGCATATATCCAATATGGGC+CGG | - | chr6_3:90988570-90988589 | Msa0964440:intron | 40.0% | |
| ATAAGTCGTTCTCGTAAGCT+CGG | + | chr6_3:90988752-90988771 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATAAGCTATGC+TGG | + | chr6_3:90988817-90988836 | None:intergenic | 40.0% |
| ! | GTATCAAGCTTCTGATGATG+TGG | - | chr6_3:90989088-90989107 | Msa0964440:intron | 40.0% |
| ! | TCTGATGATGTGGTTTACAG+CGG | - | chr6_3:90989098-90989117 | Msa0964440:intron | 40.0% |
| TACAAGCACAGAAGATGCAT+TGG | - | chr6_3:90989142-90989161 | Msa0964440:intron | 40.0% | |
| ! | GCGTTTGTGTGTTGTTGATT+CGG | - | chr6_3:90989238-90989257 | Msa0964440:intron | 40.0% |
| !! | GGAAGATGAGTTTTGCTATC+TGG | - | chr6_3:90989259-90989278 | Msa0964440:intron | 40.0% |
| ! | ATTTTGTAACGACCATGAGG+TGG | + | chr6_3:90989288-90989307 | None:intergenic | 40.0% |
| ! | TTAAAGTAAGTGGAGCACTC+AGG | - | chr6_3:90989334-90989353 | Msa0964440:intron | 40.0% |
| ! | ACTCAGGCATTGTGCATTTA+TGG | - | chr6_3:90989350-90989369 | Msa0964440:intron | 40.0% |
| GCATTGTGCATTTATGGTCA+TGG | - | chr6_3:90989356-90989375 | Msa0964440:intron | 40.0% | |
| TTTATGGTCATGGCTATGCA+TGG | - | chr6_3:90989366-90989385 | Msa0964440:intron | 40.0% | |
| GGGCAAAGGATAACAAAAAG+GGG | + | chr6_3:90989736-90989755 | None:intergenic | 40.0% | |
| GGGGCAAAGGATAACAAAAA+GGG | + | chr6_3:90989737-90989756 | None:intergenic | 40.0% | |
| ATTTGATATGAAGGGGGCAA+AGG | + | chr6_3:90989750-90989769 | None:intergenic | 40.0% | |
| CCCCCTTCATATCAAATTCA+AGG | - | chr6_3:90989753-90989772 | Msa0964440:intron | 40.0% | |
| GTGCTAAACTAGAGATGTTG+CGG | - | chr6_3:90989785-90989804 | Msa0964440:intron | 40.0% | |
| TGCTAAACTAGAGATGTTGC+GGG | - | chr6_3:90989786-90989805 | Msa0964440:intron | 40.0% | |
| GTAACTAGAATACTGCTAGG+TGG | - | chr6_3:90989932-90989951 | Msa0964440:intron | 40.0% | |
| GGTCAACAACATTGTGCAAA+GGG | + | chr6_3:90989960-90989979 | None:intergenic | 40.0% | |
| TGGTCAACAACATTGTGCAA+AGG | + | chr6_3:90989961-90989980 | None:intergenic | 40.0% | |
| GACCACAGATTGCAGAAAAT+AGG | - | chr6_3:90989976-90989995 | Msa0964440:intron | 40.0% | |
| CCACAGATTGCAGAAAATAG+GGG | - | chr6_3:90989978-90989997 | Msa0964440:intron | 40.0% | |
| GAGCCTATTTCACAAAAAGG+AGG | + | chr6_3:90990283-90990302 | None:intergenic | 40.0% | |
| CTGGAGCCTATTTCACAAAA+AGG | + | chr6_3:90990286-90990305 | None:intergenic | 40.0% | |
| ! | TTTTGTGAAATAGGCTCCAG+CGG | - | chr6_3:90990286-90990305 | Msa0964440:intron | 40.0% |
| TTTCCGCAAAGAGCTTAAGA+AGG | - | chr6_3:90990322-90990341 | Msa0964440:intron | 40.0% | |
| ACTAAAGTTCTACGCGAACT+CGG | - | chr6_3:90990359-90990378 | Msa0964440:intron | 40.0% | |
| TTCTTGTAAATGCAGAGCTG+TGG | - | chr6_3:90990486-90990505 | Msa0964440:CDS | 40.0% | |
| TCTTGTAAATGCAGAGCTGT+GGG | - | chr6_3:90990487-90990506 | Msa0964440:CDS | 40.0% | |
| AGATGTGAAGACAAAGATGC+TGG | + | chr6_3:90990725-90990744 | None:intergenic | 40.0% | |
| AGAAGATGCACCAACAAAAG+TGG | - | chr6_3:90990754-90990773 | Msa0964440:CDS | 40.0% | |
| TTGTAACATCTGGTTGGACT+AGG | - | chr6_3:90990933-90990952 | Msa0964440:five_prime_UTR | 40.0% | |
| !! | CTACTGGTCAGTTGGTAATG+CGG | + | chr6_3:90984998-90985017 | None:intergenic | 45.0% |
| TGTAACTTGAAAGTGGGGGA+GGG | + | chr6_3:90985037-90985056 | None:intergenic | 45.0% | |
| TTGTAACTTGAAAGTGGGGG+AGG | + | chr6_3:90985038-90985057 | None:intergenic | 45.0% | |
| !!! | CTGGGGAAGTTTTTTGAGGT+TGG | + | chr6_3:90985130-90985149 | None:intergenic | 45.0% |
| CCTGTGAGAAGATTGCATCA+TGG | + | chr6_3:90985173-90985192 | None:intergenic | 45.0% | |
| CCATGATGCAATCTTCTCAC+AGG | - | chr6_3:90985170-90985189 | Msa0964440:CDS | 45.0% | |
| ! | TTCTCACAGGGTACCCAAAT+TGG | - | chr6_3:90985183-90985202 | Msa0964440:CDS | 45.0% |
| ! | TCTCACAGGGTACCCAAATT+GGG | - | chr6_3:90985184-90985203 | Msa0964440:CDS | 45.0% |
| TGACGGAAGGAACCCAATTT+GGG | + | chr6_3:90985199-90985218 | None:intergenic | 45.0% | |
| ! | TTCAAGGAAACTGTGACGGA+AGG | + | chr6_3:90985212-90985231 | None:intergenic | 45.0% |
| CTCATGTCAATGAAAGGTGG+CGG | - | chr6_3:90985244-90985263 | Msa0964440:CDS | 45.0% | |
| ACAAATCGGCATCCCTTTAC+CGG | - | chr6_3:90985282-90985301 | Msa0964440:CDS | 45.0% | |
| ! | CAGATGGGATCGTTGAGTTT+TGG | - | chr6_3:90985365-90985384 | Msa0964440:CDS | 45.0% |
| GAAGAAATCAAAGCGTGTGG+CGG | - | chr6_3:90985387-90985406 | Msa0964440:CDS | 45.0% | |
| AAGAAATCAAAGCGTGTGGC+GGG | - | chr6_3:90985388-90985407 | Msa0964440:CDS | 45.0% | |
| !! | GTTTTCAGCGAAGATGGGTT+TGG | - | chr6_3:90985453-90985472 | Msa0964440:CDS | 45.0% |
| AAACAACCGTTTCCGGATGT+TGG | - | chr6_3:90985508-90985527 | Msa0964440:CDS | 45.0% | |
| AACAACCGTTTCCGGATGTT+GGG | - | chr6_3:90985509-90985528 | Msa0964440:CDS | 45.0% | |
| TACTTCCCAACATCCGGAAA+CGG | + | chr6_3:90985517-90985536 | None:intergenic | 45.0% | |
| ! | ACAGAGTACTTCCCAACATC+CGG | + | chr6_3:90985523-90985542 | None:intergenic | 45.0% |
| CTGATCGAATGTCTGTGTTC+CGG | - | chr6_3:90985633-90985652 | Msa0964440:CDS | 45.0% | |
| ! | CACTACAACAGTGTCATTGG+TGG | + | chr6_3:90985742-90985761 | None:intergenic | 45.0% |
| AAGACACGAACACGGTTACA+TGG | + | chr6_3:90985778-90985797 | None:intergenic | 45.0% | |
| TACGAAGCAAGACACGAACA+CGG | + | chr6_3:90985786-90985805 | None:intergenic | 45.0% | |
| TCGTAGTGACTTACTCCATC+CGG | - | chr6_3:90985801-90985820 | Msa0964440:intron | 45.0% | |
| AGTGGGAAGGAGAAACTTTG+TGG | - | chr6_3:90986695-90986714 | Msa0964440:CDS | 45.0% | |
| !! | TCCATGTTCTGCGTTGACTA+TGG | - | chr6_3:90987328-90987347 | Msa0964440:intron | 45.0% |
| TCCATAGTCAACGCAGAACA+TGG | + | chr6_3:90987332-90987351 | None:intergenic | 45.0% | |
| ATGTCGGACTTGTCATATGC+TGG | + | chr6_3:90987512-90987531 | None:intergenic | 45.0% | |
| ! | CAATCAAGCCTTATCCCACT+AGG | - | chr6_3:90987688-90987707 | Msa0964440:intron | 45.0% |
| AGTCAGGTTAAAAGGGGTAG+AGG | + | chr6_3:90987833-90987852 | None:intergenic | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+GGG | + | chr6_3:90987839-90987858 | None:intergenic | 45.0% | |
| GGAGGAGAGTCAGGTTAAAA+GGG | + | chr6_3:90987840-90987859 | None:intergenic | 45.0% | |
| TGGAGGAGAGTCAGGTTAAA+AGG | + | chr6_3:90987841-90987860 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr6_3:90987849-90987868 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr6_3:90987872-90987891 | Msa0964440:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | + | chr6_3:90987964-90987983 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | + | chr6_3:90987965-90987984 | None:intergenic | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | + | chr6_3:90987966-90987985 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGAG+TGG | + | chr6_3:90988016-90988035 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr6_3:90988044-90988063 | None:intergenic | 45.0% | |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr6_3:90988047-90988066 | Msa0964440:intron | 45.0% | |
| GGATTAGGGACTTTATCAGC+TGG | - | chr6_3:90988180-90988199 | Msa0964440:intron | 45.0% | |
| TTAGGGACTTTATCAGCTGG+AGG | - | chr6_3:90988183-90988202 | Msa0964440:intron | 45.0% | |
| ! | TGGAGGACTTGCTTTAGCAT+TGG | - | chr6_3:90988200-90988219 | Msa0964440:intron | 45.0% |
| ! | GGAGGACTTGCTTTAGCATT+GGG | - | chr6_3:90988201-90988220 | Msa0964440:intron | 45.0% |
| GGAATGCTGTCAAAATTGGC+TGG | - | chr6_3:90988222-90988241 | Msa0964440:intron | 45.0% | |
| ACAATTTCTTCCCACTGTCC+AGG | + | chr6_3:90988249-90988268 | None:intergenic | 45.0% | |
| GGCGTAGCAACATCATTAGA+AGG | - | chr6_3:90988630-90988649 | Msa0964440:intron | 45.0% | |
| ! | TTTTAGGCCTGTTTGGGTAC+TGG | - | chr6_3:90988701-90988720 | Msa0964440:intron | 45.0% |
| AAGCTATGCTGGTGAGCTTA+TGG | + | chr6_3:90988806-90988825 | None:intergenic | 45.0% | |
| ! | CTTCAGATTAAAGGCGTGTC+TGG | + | chr6_3:90989518-90989537 | None:intergenic | 45.0% |
| ! | ACGCCTTTAATCTGAAGCGT+CGG | - | chr6_3:90989521-90989540 | Msa0964440:intron | 45.0% |
| ! | GTACCGACGCTTCAGATTAA+AGG | + | chr6_3:90989527-90989546 | None:intergenic | 45.0% |
| GGGGGCAAAGGATAACAAAA+AGG | + | chr6_3:90989738-90989757 | None:intergenic | 45.0% | |
| !! | TGCGGGAGTCTTAGTCTTAA+TGG | - | chr6_3:90989803-90989822 | Msa0964440:intron | 45.0% |
| ! | CCCCTATTTTCTGCAATCTG+TGG | + | chr6_3:90989981-90990000 | None:intergenic | 45.0% |
| GCTATGCTGCAGTCACTATT+TGG | - | chr6_3:90990015-90990034 | Msa0964440:intron | 45.0% | |
| AAAACTTGTCTCTTCTCCGC+TGG | + | chr6_3:90990305-90990324 | None:intergenic | 45.0% | |
| GCGTAGAACTTTAGTCGCTT+CGG | + | chr6_3:90990354-90990373 | None:intergenic | 45.0% | |
| AATGCAGAGCTGTGGGAAAT+AGG | - | chr6_3:90990494-90990513 | Msa0964440:CDS | 45.0% | |
| AGCTGTGGGAAATAGGTAAC+AGG | - | chr6_3:90990501-90990520 | Msa0964440:CDS | 45.0% | |
| TCGTCGGTAACAACATTAGC+AGG | + | chr6_3:90990686-90990705 | None:intergenic | 45.0% | |
| !! | AATATTATATAATATATGTA+GGG | - | chr6_3:90985889-90985908 | Msa0964440:intron | 5.0% |
| !!! | ATACTTTTTAAATTATTAAT+CGG | + | chr6_3:90986006-90986025 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTATATAAAAAAG+TGG | - | chr6_3:90986677-90986696 | Msa0964440:CDS | 5.0% |
| !!! | TTTTTTTTATATAAAAAAGT+GGG | - | chr6_3:90986678-90986697 | Msa0964440:CDS | 5.0% |
| !! | TTATTTATTTATTTATTTAC+TGG | + | chr6_3:90986929-90986948 | None:intergenic | 5.0% |
| ATGGTGAGCACGACTAAACG+AGG | - | chr6_3:90984970-90984989 | Msa0964440:three_prime_UTR | 50.0% | |
| ! | GTGACGGAAGGAACCCAATT+TGG | + | chr6_3:90985200-90985219 | None:intergenic | 50.0% |
| ! | ATGTCAATGAAAGGTGGCGG+TGG | - | chr6_3:90985247-90985266 | Msa0964440:CDS | 50.0% |
| GGCGGTGGGTATTCACAAAT+CGG | - | chr6_3:90985268-90985287 | Msa0964440:CDS | 50.0% | |
| TCATCATCGTCGTCGGATTC+CGG | + | chr6_3:90985304-90985323 | None:intergenic | 50.0% | |
| ATGACTACATTCGCCGACGA+CGG | - | chr6_3:90985320-90985339 | Msa0964440:CDS | 50.0% | |
| AGAAATCAAAGCGTGTGGCG+GGG | - | chr6_3:90985389-90985408 | Msa0964440:CDS | 50.0% | |
| AGATGGGTGTGTCTGATCCA+AGG | - | chr6_3:90985422-90985441 | Msa0964440:CDS | 50.0% | |
| ! | TGTCTGTTACGGTGTCAGAC+CGG | + | chr6_3:90985655-90985674 | None:intergenic | 50.0% |
| ! | GCGAGTTTAGCTCAGTTCGT+AGG | - | chr6_3:90985866-90985885 | Msa0964440:intron | 50.0% |
| GTATCAAACCTGGGTCACCA+TGG | + | chr6_3:90987116-90987135 | None:intergenic | 50.0% | |
| ! | TCAAGCCTTATCCCACTAGG+TGG | - | chr6_3:90987691-90987710 | Msa0964440:intron | 50.0% |
| ! | CAAGCCTTATCCCACTAGGT+GGG | - | chr6_3:90987692-90987711 | Msa0964440:intron | 50.0% |
| ! | AAGCCTTATCCCACTAGGTG+GGG | - | chr6_3:90987693-90987712 | Msa0964440:CDS | 50.0% |
| TACCCCCACTCTCTCTCTAA+TGG | - | chr6_3:90987958-90987977 | Msa0964440:intron | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | + | chr6_3:90987963-90987982 | None:intergenic | 50.0% | |
| CGGAGATGAGGATGTTGTGT+TGG | + | chr6_3:90988024-90988043 | None:intergenic | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr6_3:90988036-90988055 | None:intergenic | 50.0% |
| !! | TCTCGTGTTGGCTCTCCATT+GGG | - | chr6_3:90988059-90988078 | Msa0964440:intron | 50.0% |
| GCAGGAGCAACTCTTAGCAA+AGG | - | chr6_3:90988147-90988166 | Msa0964440:intron | 50.0% | |
| CTGTCAAAATTGGCTGGACC+TGG | - | chr6_3:90988228-90988247 | Msa0964440:intron | 50.0% | |
| !! | CTTGGTGCTGCTGTATCTGT+TGG | - | chr6_3:90988537-90988556 | Msa0964440:intron | 50.0% |
| AGATCTTCACCGGCCCATAT+TGG | + | chr6_3:90988582-90988601 | None:intergenic | 50.0% | |
| GTTTGTGCCAGTACCCAAAC+AGG | + | chr6_3:90988711-90988730 | None:intergenic | 50.0% | |
| GGCTAGGCTACAAAACCTTG+TGG | - | chr6_3:90990850-90990869 | Msa0964440:five_prime_UTR | 50.0% | |
| ! | TCAATGAAAGGTGGCGGTGG+CGG | - | chr6_3:90985250-90985269 | Msa0964440:CDS | 55.0% |
| CGTCGTCGGATTCCGGTAAA+GGG | + | chr6_3:90985297-90985316 | None:intergenic | 55.0% | |
| TCGTCGTCGGATTCCGGTAA+AGG | + | chr6_3:90985298-90985317 | None:intergenic | 55.0% | |
| GAAACGAACACCACCGTCGT+CGG | + | chr6_3:90985336-90985355 | None:intergenic | 55.0% | |
| CTCTTCAACCATGGTGACCC+AGG | - | chr6_3:90987105-90987124 | Msa0964440:intron | 55.0% | |
| CTTATCCCACTAGGTGGGGT+CGG | - | chr6_3:90987697-90987716 | Msa0964440:CDS | 55.0% | |
| !! | CTCTCGTGTTGGCTCTCCAT+TGG | - | chr6_3:90988058-90988077 | Msa0964440:intron | 55.0% |
| AATTGGCTGGACCTGGACAG+TGG | - | chr6_3:90988235-90988254 | Msa0964440:intron | 55.0% | |
| ATTGGCTGGACCTGGACAGT+GGG | - | chr6_3:90988236-90988255 | Msa0964440:intron | 55.0% | |
| ACTACATTCGCCGACGACGG+TGG | - | chr6_3:90985323-90985342 | Msa0964440:CDS | 60.0% | |
| CGACGGTGGTGTTCGTTTCG+AGG | - | chr6_3:90985337-90985356 | Msa0964440:CDS | 60.0% | |
| CGACCCCACCTAGTGGGATA+AGG | + | chr6_3:90987699-90987718 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACCTAGT+GGG | + | chr6_3:90987705-90987724 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACCTAG+TGG | + | chr6_3:90987706-90987725 | None:intergenic | 60.0% | |
| ACTAGGTGGGGTCGGCTACA+TGG | - | chr6_3:90987705-90987724 | Msa0964440:CDS | 60.0% | |
| GCTATCTGGGAGCCACCTCA+TGG | - | chr6_3:90989273-90989292 | Msa0964440:intron | 60.0% | |
| ! | ATGAAAGGTGGCGGTGGCGG+TGG | - | chr6_3:90985253-90985272 | Msa0964440:CDS | 65.0% |
| ! | TGAAAGGTGGCGGTGGCGGT+GGG | - | chr6_3:90985254-90985273 | Msa0964440:CDS | 65.0% |
| ! | GCGGGGAGAGCATGGGAGAT+GGG | - | chr6_3:90985406-90985425 | Msa0964440:CDS | 65.0% |
| ! | AGCGTGTGGCGGGGAGAGCA+TGG | - | chr6_3:90985398-90985417 | Msa0964440:CDS | 70.0% |
| ! | GCGTGTGGCGGGGAGAGCAT+GGG | - | chr6_3:90985399-90985418 | Msa0964440:CDS | 70.0% |
| ! | GGCGGGGAGAGCATGGGAGA+TGG | - | chr6_3:90985405-90985424 | Msa0964440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 90984888 | 90991099 | 90984888 | ID=Msa0964440;Name=Msa0964440 |
| chr6_3 | mRNA | 90984888 | 90991099 | 90984888 | ID=Msa0964440-mRNA-1;Parent=Msa0964440;Name=Msa0964440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=284|1|1|1|1|1|6|114|599 |
| chr6_3 | exon | 90984888 | 90985688 | 90984888 | ID=Msa0964440-mRNA-1:exon:16435;Parent=Msa0964440-mRNA-1 |
| chr6_3 | exon | 90986577 | 90986723 | 90986577 | ID=Msa0964440-mRNA-1:exon:16434;Parent=Msa0964440-mRNA-1 |
| chr6_3 | exon | 90986824 | 90986960 | 90986824 | ID=Msa0964440-mRNA-1:exon:16433;Parent=Msa0964440-mRNA-1 |
| chr6_3 | exon | 90987336 | 90987605 | 90987336 | ID=Msa0964440-mRNA-1:exon:16432;Parent=Msa0964440-mRNA-1 |
| chr6_3 | exon | 90987693 | 90987836 | 90987693 | ID=Msa0964440-mRNA-1:exon:16431;Parent=Msa0964440-mRNA-1 |
| chr6_3 | exon | 90990401 | 90991099 | 90990401 | ID=Msa0964440-mRNA-1:exon:16430;Parent=Msa0964440-mRNA-1 |
| chr6_3 | five_prime_UTR | 90990816 | 90991099 | 90990816 | ID=Msa0964440-mRNA-1:five_prime_utr;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90990401 | 90990815 | 90990401 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90987693 | 90987836 | 90987693 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90987336 | 90987605 | 90987336 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90986824 | 90986960 | 90986824 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90986577 | 90986723 | 90986577 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | CDS | 90985002 | 90985688 | 90985002 | ID=Msa0964440-mRNA-1:cds;Parent=Msa0964440-mRNA-1 |
| chr6_3 | three_prime_UTR | 90984888 | 90985001 | 90984888 | ID=Msa0964440-mRNA-1:three_prime_utr;Parent=Msa0964440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
