AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000830 MtrunA17_Chr6g0487101 98.128 374 6 1 32 404 9 382 0.0 762
Msa1000830 MtrunA17_Chr8g0389771 81.096 365 66 2 41 403 15 378 0.0 619
Msa1000830 MtrunA17_Chr5g0399221 48.266 346 153 4 58 402 39 359 2.55e-109 325
Msa1000830 MtrunA17_Chr7g0258341 47.973 296 140 2 116 403 99 388 2.18e-98 298
Msa1000830 MtrunA17_Chr1g0194311 44.643 336 180 3 67 402 39 368 1.49e-96 293
Msa1000830 MtrunA17_Chr5g0446301 43.658 339 182 3 72 402 20 357 6.23e-96 291
Msa1000830 MtrunA17_Chr7g0265201 45.098 306 148 5 102 402 95 385 6.81e-91 279
Msa1000830 MtrunA17_Chr7g0217941 47.241 290 139 5 115 397 14 296 1.00e-87 268
Msa1000830 MtrunA17_Chr4g0070051 45.424 295 141 6 115 402 62 343 2.10e-85 264
Msa1000830 MtrunA17_Chr6g0453551 44.224 303 154 5 102 397 2 296 1.45e-83 258
Msa1000830 MtrunA17_Chr2g0294321 40.777 309 169 3 98 402 48 346 1.82e-75 238
Msa1000830 MtrunA17_Chr4g0037751 40.690 290 163 3 115 402 79 361 4.56e-72 230
Msa1000830 MtrunA17_Chr6g0466961 41.853 313 168 4 93 404 27 326 4.31e-71 226
Msa1000830 MtrunA17_Chr5g0420831 40.206 291 163 4 115 402 79 361 1.41e-70 226
Msa1000830 MtrunA17_Chr2g0295851 38.710 310 165 6 98 402 47 336 1.71e-69 223
Msa1000830 MtrunA17_Chr6g0466951 40.127 314 174 5 92 404 55 355 3.63e-68 219
Msa1000830 MtrunA17_Chr1g0161731 37.134 307 178 2 101 402 43 339 1.48e-61 202
Msa1000830 MtrunA17_Chr8g0351871 37.966 295 161 4 116 402 42 322 1.52e-61 201
Msa1000830 MtrunA17_Chr5g0440871 39.519 291 154 3 115 402 47 318 1.53e-61 201
Msa1000830 MtrunA17_Chr4g0069841 39.016 305 156 7 115 402 214 505 1.00e-59 202
Msa1000830 MtrunA17_Chr7g0269541 36.905 336 183 8 83 403 225 546 3.24e-59 201
Msa1000830 MtrunA17_Chr8g0384121 36.129 310 166 6 115 402 254 553 4.18e-59 201
Msa1000830 MtrunA17_Chr1g0192331 39.088 307 157 7 115 402 222 517 9.07e-59 200
Msa1000830 MtrunA17_Chr7g0272141 32.973 370 221 10 39 402 183 531 1.43e-57 197
Msa1000830 MtrunA17_Chr8g0345281 34.366 355 196 9 66 402 243 578 3.85e-57 197
Msa1000830 MtrunA17_Chr7g0269511 38.033 305 161 7 115 402 260 553 3.57e-56 194
Msa1000830 MtrunA17_Chr3g0129921 36.452 310 166 6 115 402 253 553 6.82e-56 193
Msa1000830 MtrunA17_Chr4g0018371 35.632 348 189 10 72 402 199 528 1.62e-55 191
Msa1000830 MtrunA17_Chr4g0069861 38.689 305 157 7 115 402 215 506 1.99e-55 191
Msa1000830 MtrunA17_Chr4g0011771 39.474 304 153 8 115 402 214 502 3.13e-54 187
Msa1000830 MtrunA17_Chr7g0269521 37.377 305 163 7 115 402 258 551 9.40e-54 187
Msa1000830 MtrunA17_Chr3g0079351 35.890 326 180 10 94 402 203 516 1.43e-53 186
Msa1000830 MtrunA17_Chr3g0090091 34.181 354 198 11 66 402 182 517 2.80e-53 185
Msa1000830 MtrunA17_Chr3g0079361 35.583 326 181 10 94 402 203 516 3.22e-53 185
Msa1000830 MtrunA17_Chr3g0079341 35.583 326 181 10 94 402 203 516 6.64e-53 184
Msa1000830 MtrunA17_Chr4g0069881 36.601 306 163 9 115 402 232 524 6.92e-53 184
Msa1000830 MtrunA17_Chr8g0354911 34.115 384 205 11 50 402 235 601 1.92e-52 184
Msa1000830 MtrunA17_Chr3g0080381 38.790 281 147 6 136 402 348 617 2.41e-52 184
Msa1000830 MtrunA17_Chr4g0011751 37.255 306 163 7 115 402 184 478 3.46e-52 181
Msa1000830 MtrunA17_Chr8g0354901 36.913 298 167 6 115 402 284 570 5.72e-52 182
Msa1000830 MtrunA17_Chr1g0175661 36.066 305 167 6 115 402 254 547 1.00e-51 181
Msa1000830 MtrunA17_Chr7g0269531 36.601 306 165 7 115 402 260 554 1.11e-51 182
Msa1000830 MtrunA17_Chr4g0011791 40.264 303 149 11 115 402 213 498 1.40e-51 180
Msa1000830 MtrunA17_Chr8g0391291 37.829 304 162 8 115 402 236 528 1.57e-51 181
Msa1000830 MtrunA17_Chr1g0195301 35.738 305 168 7 115 402 251 544 1.66e-51 181
Msa1000830 MtrunA17_Chr1g0195321 35.738 305 168 7 115 402 251 544 1.66e-51 181
Msa1000830 MtrunA17_Chr1g0195331 35.738 305 168 7 115 402 251 544 7.95e-51 179
Msa1000830 MtrunA17_Chr1g0192321 35.526 304 169 7 115 402 280 572 1.08e-50 179
Msa1000830 MtrunA17_Chr3g0126771 34.868 304 171 7 115 402 294 586 1.47e-50 179
Msa1000830 MtrunA17_Chr2g0314691 40.609 197 115 2 208 402 5 201 2.94e-50 168
Msa1000830 MtrunA17_Chr2g0302021 34.653 303 172 7 115 402 223 514 6.35e-50 176
Msa1000830 MtrunA17_Chr8g0391311 36.842 304 165 8 115 402 238 530 1.12e-49 176
Msa1000830 MtrunA17_Chr1g0147051 34.405 311 177 7 108 402 297 596 1.37e-49 177
Msa1000830 MtrunA17_Chr7g0265161 39.631 217 114 3 186 402 13 212 2.13e-49 167
Msa1000830 MtrunA17_Chr1g0195351 35.410 305 167 8 115 402 251 542 5.17e-49 174
Msa1000830 MtrunA17_Chr3g0080391 34.564 298 174 5 115 402 277 563 6.73e-49 174
Msa1000830 MtrunA17_Chr7g0233801 35.197 304 170 7 115 402 250 542 1.43e-48 173
Msa1000830 MtrunA17_Chr4g0025841 38.976 254 132 5 105 355 36 269 4.87e-48 164
Msa1000830 MtrunA17_Chr7g0233831 35.738 305 168 7 115 402 251 544 7.06e-48 171
Msa1000830 MtrunA17_Chr4g0067601 33.837 331 180 7 64 378 222 529 7.49e-48 171
Msa1000830 MtrunA17_Chr4g0067611 36.000 275 154 4 115 378 266 529 1.35e-47 171
Msa1000830 MtrunA17_Chr7g0272151 30.321 343 208 8 77 402 244 572 8.70e-47 169
Msa1000830 MtrunA17_Chr7g0233771 36.066 305 167 7 115 402 250 543 7.57e-46 166
Msa1000830 MtrunA17_Chr1g0195311 36.122 263 143 6 154 402 52 303 1.06e-45 160
Msa1000830 MtrunA17_Chr2g0295551 36.727 275 152 4 115 378 258 521 1.12e-45 165
Msa1000830 MtrunA17_Chr7g0270651 37.410 278 147 6 115 378 267 531 1.64e-45 165
Msa1000830 MtrunA17_Chr2g0295531 34.680 297 168 7 115 397 240 524 2.35e-45 165
Msa1000830 MtrunA17_Chr4g0069891 33.333 354 204 9 63 402 247 582 8.06e-45 163
Msa1000830 MtrunA17_Chr7g0234711 38.839 224 116 6 195 402 40 258 8.09e-45 156
Msa1000830 MtrunA17_Chr8g0345211 36.066 305 163 9 115 402 282 571 1.38e-44 162
Msa1000830 MtrunA17_Chr2g0301931 33.452 281 164 7 134 403 14 282 2.26e-44 155
Msa1000830 MtrunA17_Chr6g0459781 49.432 176 81 4 106 279 13 182 4.45e-44 152
Msa1000830 MtrunA17_Chr1g0194091 34.448 299 166 7 115 396 261 546 9.30e-44 160
Msa1000830 MtrunA17_Chr2g0334111 33.225 307 172 5 108 402 27 312 1.55e-43 154
Msa1000830 MtrunA17_Chr7g0268241 31.962 316 182 6 100 402 44 339 1.83e-43 155
Msa1000830 MtrunA17_Chr7g0270631 36.879 282 151 6 111 378 251 519 2.11e-43 162
Msa1000830 MtrunA17_Chr7g0270631 34.138 290 156 6 111 378 799 1075 5.99e-39 149
Msa1000830 MtrunA17_Chr1g0194081 33.887 301 175 6 115 402 263 552 2.22e-43 159
Msa1000830 MtrunA17_Chr7g0270661 37.410 278 147 6 115 378 267 531 2.37e-43 159
Msa1000830 MtrunA17_Chr7g0270671 37.410 278 147 6 115 378 267 531 2.37e-43 159
Msa1000830 MtrunA17_Chr5g0437831 33.553 304 174 9 115 402 81 372 2.98e-42 152
Msa1000830 MtrunA17_Chr2g0302001 36.842 247 135 6 173 403 186 427 2.17e-41 151
Msa1000830 MtrunA17_Chr1g0192301 31.373 306 181 8 115 402 270 564 4.36e-40 150
Msa1000830 MtrunA17_Chr8g0380581 32.026 306 177 9 115 402 73 365 4.82e-40 146
Msa1000830 MtrunA17_Chr1g0192311 31.699 306 180 8 115 402 265 559 6.54e-40 149
Msa1000830 MtrunA17_Chr1g0192281 31.699 306 180 8 115 402 265 559 6.54e-40 149
Msa1000830 MtrunA17_Chr7g0270691 32.673 303 177 9 115 402 248 538 2.26e-39 148
Msa1000830 MtrunA17_Chr4g0000121 31.046 306 182 8 115 402 252 546 2.37e-39 148
Msa1000830 MtrunA17_Chr5g0440901 49.231 130 63 1 223 349 13 142 3.41e-39 137
Msa1000830 MtrunA17_Chr6g0460141 48.889 135 66 1 143 277 13 144 1.89e-37 133
Msa1000830 MtrunA17_Chr2g0295541 31.596 307 155 6 115 378 258 552 1.76e-36 140
Msa1000830 MtrunA17_Chr6g0459791 51.304 115 55 1 289 402 2 116 7.51e-35 125
Msa1000830 MtrunA17_Chr7g0271381 28.097 331 204 7 94 402 227 545 4.06e-31 124
Msa1000830 MtrunA17_Chr5g0440891 45.122 164 70 3 115 277 56 200 3.13e-30 115
Msa1000830 MtrunA17_Chr5g0440881 34.848 132 83 1 275 403 9 140 9.99e-23 93.6
Msa1000830 MtrunA17_Chr4g0073911 34.078 179 104 4 123 296 24 193 1.61e-22 95.9
Msa1000830 MtrunA17_Chr8g0391261 34.328 134 74 4 281 402 24 155 4.22e-13 67.0
Msa1000830 MtrunA17_Chr5g0437821 30.827 133 77 3 231 349 4 135 9.16e-13 65.5
Msa1000830 MtrunA17_Chr5g0444991 41.538 65 38 0 282 346 5 69 1.70e-11 60.1
Msa1000830 MtrunA17_Chr2g0314701 40.860 93 48 1 115 207 79 164 3.77e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000830 AT5G19730.1 75.414 362 86 3 44 404 24 383 0.0 584
Msa1000830 AT5G47500.1 42.513 374 185 5 30 402 13 357 2.98e-101 305
Msa1000830 AT1G05310.1 46.906 307 148 3 106 404 91 390 5.04e-98 298
Msa1000830 AT2G36710.1 45.732 328 155 5 80 402 76 385 1.58e-97 297
Msa1000830 AT2G36700.1 44.483 290 153 2 115 402 50 333 5.59e-90 275
Msa1000830 AT3G29090.1 47.586 290 138 5 115 397 15 297 4.47e-89 272
Msa1000830 AT5G55590.1 46.801 297 154 3 108 402 84 378 7.65e-87 269
Msa1000830 AT2G21610.1 45.862 290 139 5 115 402 59 332 1.96e-86 267
Msa1000830 AT2G21610.2 46.207 290 138 6 115 402 64 337 2.16e-86 267
Msa1000830 AT1G69940.1 43.243 296 160 2 108 402 67 355 4.56e-81 253
Msa1000830 AT5G07410.1 43.243 296 160 2 108 402 67 355 8.43e-81 253
Msa1000830 AT5G07430.1 44.444 288 151 3 116 402 76 355 1.37e-80 252
Msa1000830 AT5G61680.1 43.599 289 155 2 115 402 77 358 3.87e-77 243
Msa1000830 AT3G17060.1 39.041 292 165 2 115 402 54 336 4.85e-76 240
Msa1000830 AT5G07420.1 42.561 289 157 3 115 402 75 355 2.24e-74 236
Msa1000830 AT5G55590.2 46.800 250 129 3 108 355 84 331 2.02e-73 233
Msa1000830 AT5G26810.1 38.323 334 178 8 83 402 14 333 3.29e-67 217
Msa1000830 AT5G18990.1 37.919 298 166 3 115 403 37 324 1.36e-63 207
Msa1000830 AT2G19150.1 39.041 292 162 2 117 402 51 332 3.32e-61 201
Msa1000830 AT3G24130.1 35.556 315 183 4 99 403 25 329 2.38e-60 199
Msa1000830 AT5G64640.1 36.482 307 163 5 117 401 301 597 4.61e-59 202
Msa1000830 AT5G09760.1 37.582 306 160 5 117 401 251 546 6.37e-59 201
Msa1000830 AT5G09760.2 37.582 306 160 5 117 401 277 572 8.60e-59 201
Msa1000830 AT2G47280.1 38.245 319 173 7 93 402 24 327 9.35e-59 195
Msa1000830 AT3G05620.1 38.567 293 164 5 115 402 249 530 5.95e-58 198
Msa1000830 AT1G11580.1 36.000 350 193 9 70 402 211 546 6.96e-57 196
Msa1000830 AT1G11580.2 36.000 350 193 9 70 402 232 567 1.24e-56 196
Msa1000830 AT2G45220.1 40.397 302 151 8 115 402 215 501 6.10e-56 192
Msa1000830 AT5G49180.1 36.755 302 167 6 115 402 268 559 9.04e-56 193
Msa1000830 AT4G02330.1 35.638 376 198 11 47 402 209 560 3.59e-55 191
Msa1000830 AT3G06830.1 36.755 302 167 6 115 402 266 557 3.66e-55 191
Msa1000830 AT3G05610.1 33.846 325 183 7 99 402 241 554 4.46e-55 193
Msa1000830 AT3G59010.1 35.673 342 189 9 70 402 198 517 1.58e-54 189
Msa1000830 AT4G02300.1 35.855 304 169 6 115 403 230 522 3.64e-54 188
Msa1000830 AT3G60730.1 38.644 295 155 6 123 402 225 508 1.09e-53 186
Msa1000830 AT5G27870.1 35.099 302 171 6 115 402 261 551 1.31e-53 190
Msa1000830 AT4G33230.1 36.964 303 164 7 115 402 305 595 1.95e-53 187
Msa1000830 AT2G26440.1 36.755 302 166 5 115 402 246 536 2.69e-53 186
Msa1000830 AT5G04960.1 37.540 309 170 6 105 402 257 553 6.36e-53 185
Msa1000830 AT4G00190.1 37.500 304 161 9 115 402 173 463 1.04e-52 182
Msa1000830 AT2G43050.1 38.267 277 150 5 134 402 242 505 1.66e-52 183
Msa1000830 AT1G53830.1 34.184 392 204 12 37 402 213 576 2.02e-52 184
Msa1000830 AT3G43270.1 37.954 303 162 6 115 402 223 514 3.15e-52 182
Msa1000830 AT2G26450.1 34.653 303 171 7 115 402 310 600 4.29e-52 184
Msa1000830 AT5G51490.1 38.762 307 158 8 115 402 230 525 4.59e-52 182
Msa1000830 AT3G10720.2 37.582 306 159 8 116 402 312 604 7.15e-52 183
Msa1000830 AT4G33220.2 35.644 303 169 6 115 402 100 391 7.33e-52 179
Msa1000830 AT1G53840.1 35.880 301 167 7 115 402 289 576 8.03e-52 182
Msa1000830 AT4G15980.2 36.093 302 169 6 115 402 410 701 1.57e-51 184
Msa1000830 AT4G15980.1 36.093 302 169 6 115 402 400 691 1.67e-51 184
Msa1000830 AT1G23200.1 39.172 314 169 8 98 402 243 543 1.86e-51 181
Msa1000830 AT4G03930.1 36.213 301 168 8 115 402 224 513 3.68e-51 180
Msa1000830 AT4G33220.1 35.644 303 169 6 115 402 221 512 6.16e-51 179
Msa1000830 AT4G02320.1 34.539 304 173 5 115 403 216 508 7.18e-51 179
Msa1000830 AT3G10710.1 36.577 298 168 5 115 402 264 550 1.62e-50 179
Msa1000830 AT5G04970.1 36.842 304 164 7 116 402 317 609 1.94e-50 179
Msa1000830 AT2G19150.2 40.408 245 130 2 117 355 51 285 2.49e-50 171
Msa1000830 AT1G02810.1 37.634 279 148 6 115 378 273 540 5.38e-50 177
Msa1000830 AT3G27980.1 34.451 328 176 9 103 402 170 486 4.41e-49 174
Msa1000830 AT3G10720.1 37.984 258 135 6 159 402 2 248 6.26e-48 164
Msa1000830 AT5G53370.1 35.197 304 170 7 115 402 282 574 4.98e-47 170
Msa1000830 AT5G53370.2 35.197 304 170 7 115 402 318 610 6.69e-47 170
Msa1000830 AT3G14310.1 36.393 305 164 7 115 402 290 581 1.03e-46 169
Msa1000830 AT5G51500.1 37.459 307 162 9 115 402 234 529 1.96e-46 167
Msa1000830 AT1G11590.1 34.551 301 173 7 115 402 224 513 8.59e-46 165
Msa1000830 AT2G47550.1 35.231 281 157 6 136 402 278 547 1.69e-45 165
Msa1000830 AT5G20860.2 34.314 306 167 10 115 402 238 527 1.74e-45 165
Msa1000830 AT1G11370.1 37.549 253 134 6 106 346 46 286 2.61e-45 158
Msa1000830 AT3G49220.1 32.659 346 196 10 75 402 259 585 5.76e-45 164
Msa1000830 AT3G49220.3 32.659 346 196 10 75 402 304 630 8.60e-45 164
Msa1000830 AT3G14300.1 35.099 302 170 10 115 402 669 958 3.16e-44 164
Msa1000830 AT2G47030.1 34.437 302 175 7 115 402 285 577 7.20e-44 161
Msa1000830 AT3G47400.1 35.366 328 180 8 66 378 246 556 2.61e-43 159
Msa1000830 AT2G47040.1 31.534 352 205 10 72 402 248 584 1.81e-42 157
Msa1000830 AT3G62170.1 33.681 288 167 6 107 380 277 554 3.85e-40 150
Msa1000830 AT5G20860.1 33.058 242 134 7 153 378 244 473 2.67e-36 139
Msa1000830 AT1G44980.1 31.548 168 102 3 115 281 86 241 8.24e-21 91.3

Find 83 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCTGTTGATTTCATATT+TGG 0.121916 6_4:-84167517 Msa1000830:CDS
TTCCTAAAGGATGGTATAAT+TGG 0.166771 6_4:-84166188 Msa1000830:CDS
TGTCTTTGCTTATACATATA+TGG 0.241934 6_4:-84166223 Msa1000830:CDS
GACAACTCTAACAAGATTAA+TGG 0.267014 6_4:+84169026 None:intergenic
GTTGATAAGAATCCTTCTTT+TGG 0.287967 6_4:-84169090 Msa1000830:CDS
GCAAAGACAACTCGTGAAAA+AGG 0.294337 6_4:+84166237 None:intergenic
ATCTGCACCATCTCCTTCTA+TGG 0.317044 6_4:+84168167 None:intergenic
GTCTGCTCTTGTTGTATTGT+TGG 0.317261 6_4:+84169218 None:intergenic
TGGCCAAAAGATATTGGATT+TGG 0.325437 6_4:+84164263 None:intergenic
ACTATCAGGACTGTGTTCTA+TGG 0.326516 6_4:-84164589 Msa1000830:intron
TACTTTGAATGTGATGTTCT+TGG 0.328374 6_4:+84168035 None:intergenic
CAGAACAACAATTCATGAAA+TGG 0.331842 6_4:-84169191 Msa1000830:CDS
AACTGTAAGGTCACGGGGTC+AGG 0.335283 6_4:-84166288 Msa1000830:CDS
CTTCCTGCACCTGGAGCAAT+TGG 0.339417 6_4:-84167667 Msa1000830:CDS
CTTTCACTTACCTTTATTGA+TGG 0.352915 6_4:-84164478 Msa1000830:CDS
AAATCCTTCATAACCATAGA+AGG 0.356873 6_4:-84168180 Msa1000830:CDS
CCCCAATTATACCATCCTTT+AGG 0.373131 6_4:+84166186 None:intergenic
TCCTAAAGGATGGTATAATT+GGG 0.373364 6_4:-84166187 Msa1000830:CDS
CCCGGTTGTAATTCTCATAA+AGG 0.393618 6_4:+84164323 None:intergenic
TATAAAGATTGTTATATTGA+AGG 0.394199 6_4:-84167538 Msa1000830:CDS
CAATGCGCTCTCTCTATTTG+AGG 0.395860 6_4:-84167494 Msa1000830:intron
ATGTTCTTGGCAATGAAATA+AGG 0.399336 6_4:+84168048 None:intergenic
TTTCTCATTTGTAAACTGTA+AGG 0.409609 6_4:-84166301 Msa1000830:CDS
GATACACTTTATGATCATAT+TGG 0.411749 6_4:-84167571 Msa1000830:CDS
CCATTCAGTCCCATCAATAA+AGG 0.413685 6_4:+84164468 None:intergenic
ATCTCCTTCTATGGTTATGA+AGG 0.422625 6_4:+84168176 None:intergenic
GATACATACATTTCACGGTT+AGG 0.424041 6_4:+84166159 None:intergenic
AGATACAACAATTGTTCAAT+GGG 0.424805 6_4:-84168148 Msa1000830:CDS
ACTATATCTTGGAAGAGCTT+GGG 0.427101 6_4:-84166262 Msa1000830:CDS
TTTCACTTACCTTTATTGAT+GGG 0.430217 6_4:-84164477 Msa1000830:CDS
CACTATATCTTGGAAGAGCT+TGG 0.443202 6_4:-84166263 Msa1000830:CDS
CCTTTATTGATGGGACTGAA+TGG 0.449128 6_4:-84164468 Msa1000830:CDS
GCCTTTATGAGAATTACAAC+CGG 0.452388 6_4:-84164324 Msa1000830:three_prime_UTR
GGGAATCCATTGGGAACATA+TGG 0.456454 6_4:-84168096 Msa1000830:CDS
GTTCCCAATGGATTCCCTCT+TGG 0.460412 6_4:+84168102 None:intergenic
CAGATACAACAATTGTTCAA+TGG 0.461738 6_4:-84168149 Msa1000830:CDS
AGAACAACAATTCATGAAAT+GGG 0.467696 6_4:-84169190 Msa1000830:CDS
AAGAAACCGTGAAGATATGA+AGG 0.468696 6_4:-84173242 Msa1000830:CDS
ATGAAGATACATACATTTCA+CGG 0.472479 6_4:+84166154 None:intergenic
TCTTAAACATACTGTTTACA+AGG 0.475947 6_4:-84169151 Msa1000830:CDS
TTTCCAATTGCTCCAGGTGC+AGG 0.479666 6_4:+84167664 None:intergenic
ACAATACATTGTCATACAAA+AGG 0.482414 6_4:-84169279 Msa1000830:CDS
GACAATATCATCATTCCTAA+AGG 0.492438 6_4:-84166201 Msa1000830:CDS
CAATACAAATGCACAGGACC+TGG 0.495099 6_4:-84164565 Msa1000830:CDS
CATGCAATAGCAAGAAATAC+AGG 0.503277 6_4:-84166369 Msa1000830:CDS
AATGGATTCCCTCTTGGACC+AGG 0.506866 6_4:+84168108 None:intergenic
CTCCCTGCAAAACTTGCTCC+AGG 0.513542 6_4:+84164547 None:intergenic
GGGTCAGGAGCACTATATCT+TGG 0.513788 6_4:-84166273 Msa1000830:CDS
CCGATACGTTCTACTCGAAA+CGG 0.517243 6_4:-84169249 Msa1000830:CDS
TCTTGTTAGAGTTGTCATCA+AGG 0.521394 6_4:-84169019 Msa1000830:CDS
GCGAAAGCAATTGAATTGAA+TGG 0.522162 6_4:-84173292 Msa1000830:CDS
AATGGAAGGAAGAGAATCAA+TGG 0.525259 6_4:+84169044 None:intergenic
GGTGACACTGCTGCAACACC+TGG 0.530589 6_4:-84168126 Msa1000830:CDS
ATTGCTCCAGGTGCAGGAAG+AGG 0.536208 6_4:+84167670 None:intergenic
TTTGTAAACTGTAAGGTCAC+GGG 0.536299 6_4:-84166294 Msa1000830:CDS
GTATCAAAATCTCCAAAAGA+AGG 0.540547 6_4:+84169078 None:intergenic
TGCATCTCAACTGAAGTTTG+AGG 0.541270 6_4:-84173269 Msa1000830:CDS
GGTCCAAGAGGGAATCCATT+GGG 0.541904 6_4:-84168105 Msa1000830:CDS
GTTGTCATCAAGGTTCATGC+AGG 0.544916 6_4:-84169009 Msa1000830:CDS
ATAAAGGTAAGTGAAAGAAA+AGG 0.550829 6_4:+84164484 None:intergenic
CTATATCTTGGAAGAGCTTG+GGG 0.562584 6_4:-84166261 Msa1000830:CDS
GAATGTTGGTCAAATGGCAC+AGG 0.566753 6_4:-84173314 None:intergenic
ATTTGTAAACTGTAAGGTCA+CGG 0.575614 6_4:-84166295 Msa1000830:CDS
ATATCATCATTCCTAAAGGA+TGG 0.582481 6_4:-84166197 Msa1000830:CDS
CCTTTATGAGAATTACAACC+GGG 0.588659 6_4:-84164323 Msa1000830:three_prime_UTR
TTGTCATCAAGGTTCATGCA+GGG 0.593919 6_4:-84169008 Msa1000830:CDS
TATGGACAATACAAATGCAC+AGG 0.596969 6_4:-84164571 Msa1000830:CDS
GCTGAACCATATGTTCCCAA+TGG 0.599059 6_4:+84168090 None:intergenic
GAGCACTAACAGCACAAGGA+AGG 0.601529 6_4:-84166347 Msa1000830:CDS
AGCAGTATGTTACAAGACAC+AGG 0.614754 6_4:-84166324 Msa1000830:CDS
CCTAAAGGATGGTATAATTG+GGG 0.616488 6_4:-84166186 Msa1000830:CDS
TTCATAACCATAGAAGGAGA+TGG 0.618649 6_4:-84168174 Msa1000830:CDS
CTGCAACACCTGGTCCAAGA+GGG 0.622017 6_4:-84168116 Msa1000830:CDS
TGGTCCAAGAGGGAATCCAT+TGG 0.624366 6_4:-84168106 Msa1000830:CDS
TGTCATCAAGGTTCATGCAG+GGG 0.633769 6_4:-84169007 Msa1000830:CDS
ACTCTAACAAGATTAATGGA+AGG 0.635519 6_4:+84169030 None:intergenic
GCTGCAACACCTGGTCCAAG+AGG 0.644109 6_4:-84168117 Msa1000830:CDS
AGCAATTGGAAAACAAGCAG+TGG 0.644362 6_4:-84167653 Msa1000830:CDS
CCGTTTCGAGTAGAACGTAT+CGG 0.645496 6_4:+84169249 None:intergenic
AGAAACCGTGAAGATATGAA+GGG 0.671787 6_4:-84173241 Msa1000830:CDS
ACAGGAGCACTAACAGCACA+AGG 0.679858 6_4:-84166351 Msa1000830:CDS
TTGTAAACTGTAAGGTCACG+GGG 0.696317 6_4:-84166293 Msa1000830:CDS
GATACAACAATTGTTCAATG+GGG 0.710613 6_4:-84168147 Msa1000830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATTTTATTTTTTTA+GGG + chr6_4:84165343-84165362 None:intergenic 0.0%
!!! TAAATAAATATATTTTTATA+CGG - chr6_4:84167696-84167715 Msa1000830:intron 0.0%
!! AAAAATATGGTAAATAAAAT+AGG + chr6_4:84166021-84166040 None:intergenic 10.0%
!!! AATTATATGATGATTTTAAA+TGG - chr6_4:84166125-84166144 Msa1000830:intron 10.0%
!!! TTTTATTTGTTATTGTTATT+TGG + chr6_4:84167536-84167555 None:intergenic 10.0%
!! CAATAACAAATAAAAATAAA+TGG - chr6_4:84167541-84167560 Msa1000830:CDS 10.0%
!! ATCTAAATTGTATAAAAATA+CGG + chr6_4:84167625-84167644 None:intergenic 10.0%
!!! TTAACATAGTTTTTTTTAAT+CGG - chr6_4:84169597-84169616 Msa1000830:intron 10.0%
!!! CAATAAAAAAAATTTGAAAT+TGG + chr6_4:84170494-84170513 None:intergenic 10.0%
!! TATTCCTAATTATATTATAA+TGG - chr6_4:84170537-84170556 Msa1000830:intron 10.0%
!!! TATTTTTATGAAACAAATTT+AGG - chr6_4:84170621-84170640 Msa1000830:intron 10.0%
!! ACAAAAAAAAAAATCTTTAT+TGG + chr6_4:84171916-84171935 None:intergenic 10.0%
!!! ATAAAGATTTTTTTTTTTGT+TGG - chr6_4:84171916-84171935 Msa1000830:intron 10.0%
!! AAACAAATATTATCATAAAA+TGG + chr6_4:84172131-84172150 None:intergenic 10.0%
!! AAAATAAAATAAATATTGGA+GGG + chr6_4:84172260-84172279 None:intergenic 10.0%
!! AAATATAAGAATATAATGGT+AGG + chr6_4:84165316-84165335 None:intergenic 15.0%
!! CTTCACAAAAAAAAAAAAAA+AGG + chr6_4:84165880-84165899 None:intergenic 15.0%
!! AAAACTAAATGAGAAAAATA+TGG + chr6_4:84166034-84166053 None:intergenic 15.0%
!!! AATATTTACATTTTTTCTAG+AGG + chr6_4:84166171-84166190 None:intergenic 15.0%
!! TTTAATTAGTATAACTTGAT+TGG + chr6_4:84166394-84166413 None:intergenic 15.0%
!! TTAAAAAATAAGTGTAACTA+CGG + chr6_4:84167330-84167349 None:intergenic 15.0%
!!! CACTTATTTTTTAATCTAAT+TGG - chr6_4:84167336-84167355 Msa1000830:intron 15.0%
!! ATTGTAACAATACTATTAAA+TGG - chr6_4:84167438-84167457 Msa1000830:intron 15.0%
!! TTGTAACAATACTATTAAAT+GGG - chr6_4:84167439-84167458 Msa1000830:intron 15.0%
!! TACTATTCAAATTAAGATAA+TGG + chr6_4:84167483-84167502 None:intergenic 15.0%
!!! TTATATTTTTATACCGTATT+TGG + chr6_4:84167776-84167795 None:intergenic 15.0%
!! ATCAAATTATTCAAAAATGT+TGG + chr6_4:84168879-84168898 None:intergenic 15.0%
!!! ATTTTATATTATTCAAGCTT+AGG + chr6_4:84169202-84169221 None:intergenic 15.0%
!! TTTATATACGAGAATAAATT+TGG + chr6_4:84169623-84169642 None:intergenic 15.0%
!! TATAAAGATTGTTATATTGA+AGG - chr6_4:84170038-84170057 Msa1000830:intron 15.0%
!!! AATATGAATAGTTTTTTTAG+GGG + chr6_4:84170386-84170405 None:intergenic 15.0%
!!! GAATATGAATAGTTTTTTTA+GGG + chr6_4:84170387-84170406 None:intergenic 15.0%
!!! TGAATATGAATAGTTTTTTT+AGG + chr6_4:84170388-84170407 None:intergenic 15.0%
!! GTTTCCATTATAATATAATT+AGG + chr6_4:84170544-84170563 None:intergenic 15.0%
!! TGATAATTAACTTAAAGATT+TGG + chr6_4:84170797-84170816 None:intergenic 15.0%
!!! TTTCAATCGATATTTAAAAT+CGG - chr6_4:84171711-84171730 Msa1000830:intron 15.0%
!!! TTTTTTTTTGTTGGTAAATA+TGG - chr6_4:84171925-84171944 Msa1000830:intron 15.0%
!!! TATTTTTTATTAAATGCTTG+TGG - chr6_4:84172174-84172193 Msa1000830:intron 15.0%
!! CAAAATAAAATAAATATTGG+AGG + chr6_4:84172261-84172280 None:intergenic 15.0%
!! ATAAGTAATAAACAACTTAT+AGG - chr6_4:84172283-84172302 Msa1000830:intron 15.0%
!! ATATATTTAAACCTACTAAT+GGG + chr6_4:84172925-84172944 None:intergenic 15.0%
!! AATATATTTAAACCTACTAA+TGG + chr6_4:84172926-84172945 None:intergenic 15.0%
!!! CATAATATAGTTTATTTTCT+TGG - chr6_4:84173177-84173196 Msa1000830:intron 15.0%
!!! TTTTTTTTACTCATATAACT+GGG - chr6_4:84173278-84173297 Msa1000830:CDS 15.0%
!!! TTTTTTTTTAAGTAGTGTGT+TGG + chr6_4:84164540-84164559 None:intergenic 20.0%
!!! GTTTCTATAGTAATTTTTTG+CGG + chr6_4:84164867-84164886 None:intergenic 20.0%
!!! TCACTAAGAGTAAATTTTTT+GGG + chr6_4:84164915-84164934 None:intergenic 20.0%
!!! TTCACTAAGAGTAAATTTTT+TGG + chr6_4:84164916-84164935 None:intergenic 20.0%
!! ACAATGCATTATTATATGTA+GGG + chr6_4:84165538-84165557 None:intergenic 20.0%
!!! GTTTTTTACTAAACAATTCA+CGG - chr6_4:84165766-84165785 Msa1000830:intron 20.0%
!!! ATTTTTATTAGCTTGTCTTT+TGG - chr6_4:84165792-84165811 Msa1000830:intron 20.0%
!!! TTTTTATTAGCTTGTCTTTT+GGG - chr6_4:84165793-84165812 Msa1000830:intron 20.0%
!! ATATGGTAAATAAAATAGGT+GGG + chr6_4:84166017-84166036 None:intergenic 20.0%
!! AATATGGTAAATAAAATAGG+TGG + chr6_4:84166018-84166037 None:intergenic 20.0%
!! TTTAACGAGTATATATTACT+TGG - chr6_4:84166191-84166210 Msa1000830:CDS 20.0%
!! ACCTCAAATGAAAAATATTT+AGG + chr6_4:84166338-84166357 None:intergenic 20.0%
!! ATTCTAATTACATTAATGTG+TGG - chr6_4:84166624-84166643 Msa1000830:intron 20.0%
!!! TATAATTTGAAGCTAACTTT+CGG + chr6_4:84166694-84166713 None:intergenic 20.0%
!!! GAAGATAATTATATAATGGA+AGG + chr6_4:84166819-84166838 None:intergenic 20.0%
!! GTCAGAAGATAATTATATAA+TGG + chr6_4:84166823-84166842 None:intergenic 20.0%
!! AAATTAAAATTTAGGTGAGT+TGG + chr6_4:84167164-84167183 None:intergenic 20.0%
!! AAAATTAAAGATGATACAAG+AGG - chr6_4:84167202-84167221 Msa1000830:intron 20.0%
!! ATTGTTACAATGTACTAATT+TGG + chr6_4:84167429-84167448 None:intergenic 20.0%
!!! TCAAATTAAGATAATGGAAT+GGG + chr6_4:84167477-84167496 None:intergenic 20.0%
!!! TTCAAATTAAGATAATGGAA+TGG + chr6_4:84167478-84167497 None:intergenic 20.0%
!! TTTCATCATAACACAAAAAT+AGG - chr6_4:84167504-84167523 Msa1000830:CDS 20.0%
!! TGACAAAAAAATAAAGAGTA+AGG + chr6_4:84167664-84167683 None:intergenic 20.0%
!!! AATGTTATGGTACTTATTTT+TGG + chr6_4:84167987-84168006 None:intergenic 20.0%
!! TAAGTACCATAACATTATTA+AGG - chr6_4:84167991-84168010 Msa1000830:intron 20.0%
!! CATTATCCTTAATAATGTTA+TGG + chr6_4:84168000-84168019 None:intergenic 20.0%
!! AAATATTTGGTCGTATATTA+CGG + chr6_4:84168059-84168078 None:intergenic 20.0%
!! AGAACTCTAAACAAAATATT+TGG + chr6_4:84168072-84168091 None:intergenic 20.0%
!! TTATGAAAATGAAGAAATGA+TGG + chr6_4:84168200-84168219 None:intergenic 20.0%
!! AAATTGTGATCAAATATGTA+TGG - chr6_4:84168698-84168717 Msa1000830:intron 20.0%
!! GCATTAAATGTATTAAATGA+TGG + chr6_4:84170121-84170140 None:intergenic 20.0%
!!! AGAATCATAGGTTTTTTTTT+TGG - chr6_4:84170141-84170160 Msa1000830:intron 20.0%
!!! AAGAATCATTTAGGTTTTTT+AGG - chr6_4:84170168-84170187 Msa1000830:intron 20.0%
!! TCCAAAAAAAAACAAGTATT+GGG + chr6_4:84170769-84170788 None:intergenic 20.0%
!! ATCCAAAAAAAAACAAGTAT+TGG + chr6_4:84170770-84170789 None:intergenic 20.0%
!!! ATTTTTCATGATTTAGTCTA+TGG - chr6_4:84170844-84170863 Msa1000830:intron 20.0%
!! CAACTAATCAAATTATTACT+AGG + chr6_4:84170891-84170910 None:intergenic 20.0%
!!! TCTTCAATGTCAATTTTAAT+GGG + chr6_4:84171013-84171032 None:intergenic 20.0%
!!! ATCTTCAATGTCAATTTTAA+TGG + chr6_4:84171014-84171033 None:intergenic 20.0%
!!! TTCAATCGATATTTAAAATC+GGG - chr6_4:84171712-84171731 Msa1000830:intron 20.0%
!!! ATGTTAACGATTAGTTTTTT+AGG - chr6_4:84171762-84171781 Msa1000830:intron 20.0%
!! TGTATTTAGTATTTACTTGA+TGG + chr6_4:84172377-84172396 None:intergenic 20.0%
!!! ACTAAATACAGATAATGTTT+TGG - chr6_4:84172387-84172406 Msa1000830:intron 20.0%
!!! AGTATTATTGTTTCAAGTTT+AGG - chr6_4:84172681-84172700 Msa1000830:intron 20.0%
!! TGTAAACTCAATATACAAAA+CGG - chr6_4:84172776-84172795 Msa1000830:intron 20.0%
!!! AATATAGTTTATTTTCTTGG+TGG - chr6_4:84173180-84173199 Msa1000830:intron 20.0%
!! CAGTTATATGAGTAAAAAAA+AGG + chr6_4:84173279-84173298 None:intergenic 20.0%
!!! CTTTTTTTTACTCATATAAC+TGG - chr6_4:84173277-84173296 Msa1000830:CDS 20.0%
! ATATGAAGGGAAAAAACATA+AGG - chr6_4:84164348-84164367 Msa1000830:three_prime_UTR 25.0%
! TTAATATCTGCAAAGTGATT+TGG + chr6_4:84164379-84164398 None:intergenic 25.0%
!!! AGTAAATTTTTTGGGTATTG+TGG + chr6_4:84164907-84164926 None:intergenic 25.0%
! ATTTACTCTTAGTGAAGATA+AGG - chr6_4:84164920-84164939 Msa1000830:intron 25.0%
! TTTACTCTTAGTGAAGATAA+GGG - chr6_4:84164921-84164940 Msa1000830:intron 25.0%
!!! GATAAGAGTACCTATTTTTT+TGG - chr6_4:84165047-84165066 Msa1000830:intron 25.0%
!!! GATTTTAATGTCACATGATT+AGG - chr6_4:84165367-84165386 Msa1000830:intron 25.0%
! CTATTAAATTCTGTATGTAG+CGG - chr6_4:84165413-84165432 Msa1000830:intron 25.0%
! TATTAAATTCTGTATGTAGC+GGG - chr6_4:84165414-84165433 Msa1000830:intron 25.0%
! TGACTAGAATTCATCTTATA+AGG - chr6_4:84165477-84165496 Msa1000830:intron 25.0%
! ATCTTATAAGGTGAATAAGT+GGG - chr6_4:84165489-84165508 Msa1000830:intron 25.0%
! CAATGCATTATTATATGTAG+GGG + chr6_4:84165537-84165556 None:intergenic 25.0%
! GACAATGCATTATTATATGT+AGG + chr6_4:84165539-84165558 None:intergenic 25.0%
! CATATCAAATCCAAAATCAT+TGG + chr6_4:84165696-84165715 None:intergenic 25.0%
!!! TTTTATTAGCTTGTCTTTTG+GGG - chr6_4:84165794-84165813 Msa1000830:intron 25.0%
!! ATTTTCTTTACAAAAGCTTG+TGG - chr6_4:84165841-84165860 Msa1000830:intron 25.0%
!! TCTAAAGTAACTTTCATTCT+TGG + chr6_4:84165985-84166004 None:intergenic 25.0%
!! GCCTAAATATTTTTCATTTG+AGG - chr6_4:84166334-84166353 Msa1000830:CDS 25.0%
!! AATTAGTTTGATGTATACCT+TGG + chr6_4:84166518-84166537 None:intergenic 25.0%
! AAGGTATACATCAAACTAAT+TGG - chr6_4:84166517-84166536 Msa1000830:intron 25.0%
! TATCTATACACTTTACCTTA+TGG - chr6_4:84166732-84166751 Msa1000830:intron 25.0%
! ATCTATACACTTTACCTTAT+GGG - chr6_4:84166733-84166752 Msa1000830:intron 25.0%
!! ATGGATCATTTTATGAATAG+TGG + chr6_4:84166785-84166804 None:intergenic 25.0%
! ATGGAAGGTTTCTATATTAA+TGG + chr6_4:84166804-84166823 None:intergenic 25.0%
! CTGAATTTATATGATGAAGT+AGG - chr6_4:84166877-84166896 Msa1000830:intron 25.0%
! ATTTATATGATGAAGTAGGA+CGG - chr6_4:84166881-84166900 Msa1000830:intron 25.0%
!! TTAGAAGAAGTTGATTTAGT+TGG - chr6_4:84167000-84167019 Msa1000830:intron 25.0%
! AATGTGACTTAAAATTAGTC+GGG + chr6_4:84167283-84167302 None:intergenic 25.0%
! GAATGTGACTTAAAATTAGT+CGG + chr6_4:84167284-84167303 None:intergenic 25.0%
!!! CAAATTAAGATAATGGAATG+GGG + chr6_4:84167476-84167495 None:intergenic 25.0%
! ATTGTATAAAAATACGGTGT+TGG + chr6_4:84167619-84167638 None:intergenic 25.0%
! CGTATTTGGTCTATATTATA+GGG + chr6_4:84167762-84167781 None:intergenic 25.0%
! CCTATAATATAGACCAAATA+CGG - chr6_4:84167760-84167779 Msa1000830:intron 25.0%
! CATTGTCTTGTACAAATATT+TGG + chr6_4:84167844-84167863 None:intergenic 25.0%
!!! TACTTATTTTTGGTGGAAAA+GGG + chr6_4:84167977-84167996 None:intergenic 25.0%
!! TTTTGTATGACAATGTATTG+TGG + chr6_4:84168298-84168317 None:intergenic 25.0%
! ACAATACATTGTCATACAAA+AGG - chr6_4:84168297-84168316 Msa1000830:intron 25.0%
! AGAACAACAATTCATGAAAT+GGG - chr6_4:84168386-84168405 Msa1000830:intron 25.0%
! TCTTAAACATACTGTTTACA+AGG - chr6_4:84168425-84168444 Msa1000830:intron 25.0%
!!! TGTCCAAAGTTTTTAATTTG+CGG - chr6_4:84168648-84168667 Msa1000830:intron 25.0%
! TGTAAATACAGTTTGACTAA+GGG + chr6_4:84168781-84168800 None:intergenic 25.0%
! ATGTAAATACAGTTTGACTA+AGG + chr6_4:84168782-84168801 None:intergenic 25.0%
!!! TTTTGTTTTTGTACCCTTAT+TGG - chr6_4:84169098-84169117 Msa1000830:CDS 25.0%
!! ATGGTTATGAAGGATTTTAA+AGG + chr6_4:84169393-84169412 None:intergenic 25.0%
! AGATACAACAATTGTTCAAT+GGG - chr6_4:84169428-84169447 Msa1000830:intron 25.0%
! AAAACCTTCAAGTCAAAATA+AGG - chr6_4:84169674-84169693 Msa1000830:intron 25.0%
! AAACCTTCAAGTCAAAATAA+GGG - chr6_4:84169675-84169694 Msa1000830:intron 25.0%
! CTAATTATTGCTAGCAATAA+TGG - chr6_4:84169698-84169717 Msa1000830:intron 25.0%
! AGTAGCATAAATTTAGAGAT+AGG - chr6_4:84169754-84169773 Msa1000830:intron 25.0%
!!! TTTTTAGGGTGCAAATTTTT+AGG - chr6_4:84169975-84169994 Msa1000830:intron 25.0%
! GATACACTTTATGATCATAT+TGG - chr6_4:84170005-84170024 Msa1000830:intron 25.0%
! TACATTTAATGCAGAATCAT+AGG - chr6_4:84170129-84170148 Msa1000830:intron 25.0%
! TTTGGTACAAAGAATCATTT+AGG - chr6_4:84170159-84170178 Msa1000830:intron 25.0%
!!! AAAAAAAGTGCCCTTTAAAT+TGG + chr6_4:84170304-84170323 None:intergenic 25.0%
!! AGAATTTTTCTTGTCCTTAT+TGG - chr6_4:84170467-84170486 Msa1000830:intron 25.0%
!! AATTTGAAATTGGTCCAATA+AGG + chr6_4:84170484-84170503 None:intergenic 25.0%
!! TATGAAACAAATTTAGGATG+AGG - chr6_4:84170627-84170646 Msa1000830:intron 25.0%
!!! AAAAAAACAAGTATTGGGTT+CGG + chr6_4:84170764-84170783 None:intergenic 25.0%
!!! ACCCAATACTTGTTTTTTTT+TGG - chr6_4:84170765-84170784 Msa1000830:intron 25.0%
!! AAAAACTATGATGTTTTCCT+CGG + chr6_4:84170969-84170988 None:intergenic 25.0%
!! TAATCGAACCTGAAATTTTA+AGG - chr6_4:84171033-84171052 Msa1000830:intron 25.0%
! TTTCTCATTTGTAAACTGTA+AGG - chr6_4:84171275-84171294 Msa1000830:intron 25.0%
! TGTCTTTGCTTATACATATA+TGG - chr6_4:84171353-84171372 Msa1000830:intron 25.0%
! ATGAAGATACATACATTTCA+CGG + chr6_4:84171425-84171444 None:intergenic 25.0%
! ACAATTCACACTTAAAACTT+AGG - chr6_4:84171572-84171591 Msa1000830:intron 25.0%
! CAATTCACACTTAAAACTTA+GGG - chr6_4:84171573-84171592 Msa1000830:intron 25.0%
! GTGAAATGGTTATGATAATT+TGG - chr6_4:84171650-84171669 Msa1000830:intron 25.0%
!! GTGTATTTGAATTTTGAACT+AGG - chr6_4:84171972-84171991 Msa1000830:intron 25.0%
! TCTCTATCAACAATTAACTA+AGG + chr6_4:84172054-84172073 None:intergenic 25.0%
! GAGAAGTTAAACAAAAAACA+AGG - chr6_4:84172070-84172089 Msa1000830:intron 25.0%
!!! AACATTTTTTTGGTTACGAT+GGG + chr6_4:84172897-84172916 None:intergenic 25.0%
! ATAAAGGTAAGTGAAAGAAA+AGG + chr6_4:84173095-84173114 None:intergenic 25.0%
! TTTCACTTACCTTTATTGAT+GGG - chr6_4:84173099-84173118 Msa1000830:intron 25.0%
! TTTTTCCCTTCATATCTTCA+CGG + chr6_4:84164343-84164362 None:intergenic 30.0%
ATACAAAATTCCATTAGACG+AGG - chr6_4:84164447-84164466 Msa1000830:exon 30.0%
TACAAAATTCCATTAGACGA+GGG - chr6_4:84164448-84164467 Msa1000830:exon 30.0%
! TTTGGAGCTTCATAAAATCA+CGG + chr6_4:84164764-84164783 None:intergenic 30.0%
!!! CTTCACTTTTTTCAAAACCA+CGG + chr6_4:84164817-84164836 None:intergenic 30.0%
!!! GATAAGGGTACCTATTTTTT+TGG - chr6_4:84164936-84164955 Msa1000830:intron 30.0%
CGTCTATCTACCAAAAAAAT+AGG + chr6_4:84164949-84164968 None:intergenic 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr6_4:84164952-84164971 Msa1000830:intron 30.0%
! TTGTGTGTGTGATTTTATGA+TGG + chr6_4:84164983-84165002 None:intergenic 30.0%
CGTCTATCTACCAAAAAAAT+AGG + chr6_4:84164949-84164968 None:intergenic 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr6_4:84164952-84164971 Msa1000830:intron 30.0%
! TTGTGTGTGTGATTTTATGA+TGG + chr6_4:84164983-84165002 None:intergenic 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr6_4:84164952-84164971 Msa1000830:intron 30.0%
! TTGTGTGTGTGATTTTATGA+TGG + chr6_4:84164983-84165002 None:intergenic 30.0%
GGCAAAATGTCAAAATTGTT+AGG + chr6_4:84165224-84165243 None:intergenic 30.0%
TAAGATGAATTCTAGTCACT+AGG + chr6_4:84165475-84165494 None:intergenic 30.0%
CATCTTATAAGGTGAATAAG+TGG - chr6_4:84165488-84165507 Msa1000830:intron 30.0%
TCTTATAAGGTGAATAAGTG+GGG - chr6_4:84165490-84165509 Msa1000830:intron 30.0%
TTTCAATTGTACATGTTGCA+AGG + chr6_4:84165618-84165637 None:intergenic 30.0%
GTGAATGATGAATGAATCAA+TGG + chr6_4:84165674-84165693 None:intergenic 30.0%
! TCATCATTCACCAATGATTT+TGG - chr6_4:84165683-84165702 Msa1000830:intron 30.0%
AAGTAACTTTCATTCTTGGA+AGG + chr6_4:84165981-84166000 None:intergenic 30.0%
TACTTGGTCACAACTTTAAA+TGG - chr6_4:84166207-84166226 Msa1000830:CDS 30.0%
ATTTAGGCGCACATATAAAT+TGG + chr6_4:84166322-84166341 None:intergenic 30.0%
TAATGTGTGGTTCCAAATTT+AGG - chr6_4:84166637-84166656 Msa1000830:intron 30.0%
AATCATGACTGTCCTAAATT+TGG + chr6_4:84166652-84166671 None:intergenic 30.0%
! TATCTTTTATCGTCCTAATG+AGG - chr6_4:84166974-84166993 Msa1000830:intron 30.0%
AGTTAGCTCATACTCAATAA+AGG - chr6_4:84167036-84167055 Msa1000830:intron 30.0%
TTTCAGTGTGAAAATATCGT+TGG - chr6_4:84167077-84167096 Msa1000830:intron 30.0%
ACGGTATAAAAATATACGAC+AGG - chr6_4:84167715-84167734 Msa1000830:intron 30.0%
CCGTATTTGGTCTATATTAT+AGG + chr6_4:84167763-84167782 None:intergenic 30.0%
TATGCTCGAATAACATAAGT+CGG - chr6_4:84167818-84167837 Msa1000830:intron 30.0%
!!! GTACTTATTTTTGGTGGAAA+AGG + chr6_4:84167978-84167997 None:intergenic 30.0%
!!! GTTATGGTACTTATTTTTGG+TGG + chr6_4:84167984-84168003 None:intergenic 30.0%
! AATGAAGAAATGATGGAGAA+TGG + chr6_4:84168193-84168212 None:intergenic 30.0%
CAGAACAACAATTCATGAAA+TGG - chr6_4:84168385-84168404 Msa1000830:intron 30.0%
!! GTTGATAAGAATCCTTCTTT+TGG - chr6_4:84168486-84168505 Msa1000830:intron 30.0%
GTATCAAAATCTCCAAAAGA+AGG + chr6_4:84168501-84168520 None:intergenic 30.0%
ACTCTAACAAGATTAATGGA+AGG + chr6_4:84168549-84168568 None:intergenic 30.0%
GACAACTCTAACAAGATTAA+TGG + chr6_4:84168553-84168572 None:intergenic 30.0%
!! TTTTCCTTTTGTTTGTAGTG+TGG - chr6_4:84168622-84168641 Msa1000830:intron 30.0%
TGACCGCAAATTAAAAACTT+TGG + chr6_4:84168654-84168673 None:intergenic 30.0%
GTGATCAAATATGTATGGTA+AGG - chr6_4:84168703-84168722 Msa1000830:intron 30.0%
AAGGTAGAAGACATATTGTT+TGG - chr6_4:84168722-84168741 Msa1000830:intron 30.0%
GTCAAACTGTATTTACATCT+CGG - chr6_4:84168784-84168803 Msa1000830:intron 30.0%
! AAAATGTTGGCTACTCAATT+TGG + chr6_4:84168866-84168885 None:intergenic 30.0%
! TTTTTGTCAGAGATGAACTT+TGG - chr6_4:84168904-84168923 Msa1000830:intron 30.0%
TGTAAAGATAGAAACTCACA+AGG + chr6_4:84169032-84169051 None:intergenic 30.0%
GAATACACGAGATTTGATTA+TGG + chr6_4:84169271-84169290 None:intergenic 30.0%
AACTATTAGAAGAGAAACCT+TGG + chr6_4:84169330-84169349 None:intergenic 30.0%
!! TTGTGTGTGTTTTTATGTCT+AGG - chr6_4:84169349-84169368 Msa1000830:intron 30.0%
!! TGTGTGTGTTTTTATGTCTA+GGG - chr6_4:84169350-84169369 Msa1000830:intron 30.0%
!! GTTATGAAGGATTTTAAAGG+AGG + chr6_4:84169390-84169409 None:intergenic 30.0%
AAATCCTTCATAACCATAGA+AGG - chr6_4:84169396-84169415 Msa1000830:intron 30.0%
CAGATACAACAATTGTTCAA+TGG - chr6_4:84169427-84169446 Msa1000830:intron 30.0%
GATACAACAATTGTTCAATG+GGG - chr6_4:84169429-84169448 Msa1000830:intron 30.0%
ATGTTCTTGGCAATGAAATA+AGG + chr6_4:84169531-84169550 None:intergenic 30.0%
TACTTTGAATGTGATGTTCT+TGG + chr6_4:84169544-84169563 None:intergenic 30.0%
TGCTAAAGACGTCAAATTTA+AGG - chr6_4:84169812-84169831 Msa1000830:intron 30.0%
GCTAAAGACGTCAAATTTAA+GGG - chr6_4:84169813-84169832 Msa1000830:intron 30.0%
!! CAGATACAGCATCATTTTTA+GGG - chr6_4:84169961-84169980 Msa1000830:intron 30.0%
!! GGTTCTGTTGATTTCATATT+TGG - chr6_4:84170059-84170078 Msa1000830:intron 30.0%
!! TATTGCATTGTTGCTTTATG+TGG + chr6_4:84170194-84170213 None:intergenic 30.0%
TAACCCCAAATCCAATTTAA+AGG - chr6_4:84170290-84170309 Msa1000830:intron 30.0%
AACCCCAAATCCAATTTAAA+GGG - chr6_4:84170291-84170310 Msa1000830:intron 30.0%
AACTCAATGTACATGATGAA+GGG + chr6_4:84170337-84170356 None:intergenic 30.0%
TAACTCAATGTACATGATGA+AGG + chr6_4:84170338-84170357 None:intergenic 30.0%
TTCATCATGTACATTGAGTT+AGG - chr6_4:84170337-84170356 Msa1000830:intron 30.0%
CTAGGATAGTTCTTGAATAT+AGG + chr6_4:84170873-84170892 None:intergenic 30.0%
GTCTACTAAAGAAAGAAATG+AGG - chr6_4:84170910-84170929 Msa1000830:intron 30.0%
! CTGTTTCTCCTTAAAATTTC+AGG + chr6_4:84171044-84171063 None:intergenic 30.0%
! ATGTTGTGACACTTTTACAT+AGG - chr6_4:84171173-84171192 Msa1000830:intron 30.0%
! TGTTGTGACACTTTTACATA+GGG - chr6_4:84171174-84171193 Msa1000830:intron 30.0%
ATTTGTAAACTGTAAGGTCA+CGG - chr6_4:84171281-84171300 Msa1000830:intron 30.0%
GACAATATCATCATTCCTAA+AGG - chr6_4:84171375-84171394 Msa1000830:intron 30.0%
ATATCATCATTCCTAAAGGA+TGG - chr6_4:84171379-84171398 Msa1000830:intron 30.0%
TTCCTAAAGGATGGTATAAT+TGG - chr6_4:84171388-84171407 Msa1000830:intron 30.0%
TCCTAAAGGATGGTATAATT+GGG - chr6_4:84171389-84171408 Msa1000830:intron 30.0%
AGAAAGTGATATATAGAGAG+AGG + chr6_4:84171452-84171471 None:intergenic 30.0%
TAACATAGTATAGACACACA+TGG - chr6_4:84171500-84171519 Msa1000830:intron 30.0%
CTTAGGGAAATAAATCATAG+AGG - chr6_4:84171589-84171608 Msa1000830:intron 30.0%
! GGTTATGATAATTTGGAGTT+CGG - chr6_4:84171657-84171676 Msa1000830:intron 30.0%
AACTTATAGGAACTCTTTGT+TGG - chr6_4:84172296-84172315 Msa1000830:intron 30.0%
TCTAAATACAGAGAATGTTC+TGG - chr6_4:84172351-84172370 Msa1000830:intron 30.0%
AATACTGGCATCAAATTTAG+TGG + chr6_4:84172413-84172432 None:intergenic 30.0%
ATCTATATACCAGCAAATAC+TGG + chr6_4:84172428-84172447 None:intergenic 30.0%
GCTGGTATATAGATAAGATA+AGG - chr6_4:84172434-84172453 Msa1000830:intron 30.0%
AGTTCAATATATGAAGCCAT+GGG + chr6_4:84172507-84172526 None:intergenic 30.0%
AAGTTCAATATATGAAGCCA+TGG + chr6_4:84172508-84172527 None:intergenic 30.0%
!!! CAACATTTTTTTGGTTACGA+TGG + chr6_4:84172898-84172917 None:intergenic 30.0%
CTTTCACTTACCTTTATTGA+TGG - chr6_4:84173098-84173117 Msa1000830:intron 30.0%
ATATGAGTAAAAAAAAGGCC+CGG + chr6_4:84173274-84173293 None:intergenic 30.0%
GCGAAAGCAATTGAATTGAA+TGG - chr6_4:84164284-84164303 Msa1000830:three_prime_UTR 35.0%
AAGAAACCGTGAAGATATGA+AGG - chr6_4:84164334-84164353 Msa1000830:three_prime_UTR 35.0%
AGAAACCGTGAAGATATGAA+GGG - chr6_4:84164335-84164354 Msa1000830:three_prime_UTR 35.0%
ACAAAATTCCATTAGACGAG+GGG - chr6_4:84164449-84164468 Msa1000830:exon 35.0%
CAGTCTATTAAGTGTGTGTT+TGG - chr6_4:84164684-84164703 Msa1000830:intron 35.0%
! GATTTTATGAAGCTCCAAAG+TGG - chr6_4:84164765-84164784 Msa1000830:intron 35.0%
!!! ACTTTTTTCAAAACCACGGT+AGG + chr6_4:84164813-84164832 None:intergenic 35.0%
CATAAAATCACACACACAAG+TGG - chr6_4:84164984-84165003 Msa1000830:intron 35.0%
CATAAAATCACACACACAAG+TGG - chr6_4:84164984-84165003 Msa1000830:intron 35.0%
CATAAAATCACACACACAAG+TGG - chr6_4:84164984-84165003 Msa1000830:intron 35.0%
! GCTATAGCATCGAGTTAAAT+AGG + chr6_4:84165279-84165298 None:intergenic 35.0%
TACCAATTGAGTTATGCTCA+CGG - chr6_4:84165560-84165579 Msa1000830:intron 35.0%
ATTGTACATGTTGCAAGGAA+TGG + chr6_4:84165613-84165632 None:intergenic 35.0%
TTGATGTATACCTTGGCATA+TGG + chr6_4:84166511-84166530 None:intergenic 35.0%
CTTCTTCTAACTTCCTCATT+AGG + chr6_4:84166990-84167009 None:intergenic 35.0%
!! TTGACTACTTTTGCTCTAAG+TGG + chr6_4:84167234-84167253 None:intergenic 35.0%
TTATGCACCATAGAGCAATA+TGG - chr6_4:84167392-84167411 Msa1000830:intron 35.0%
GTACTAATTTGGAAACCAGT+TGG + chr6_4:84167418-84167437 None:intergenic 35.0%
!! TTAAGATAATGGAATGGGGT+AGG + chr6_4:84167472-84167491 None:intergenic 35.0%
TCTAGATTGTCTCTTCTACA+TGG - chr6_4:84167910-84167929 Msa1000830:intron 35.0%
CTCGACAGATTAATCAATGT+AGG + chr6_4:84168026-84168045 None:intergenic 35.0%
ATTAATCTGTCGAGTCAGAT+AGG - chr6_4:84168032-84168051 Msa1000830:intron 35.0%
! TGATGGAGAATGGTATGTTT+TGG + chr6_4:84168183-84168202 None:intergenic 35.0%
!! ATGAAATGGGTGAGTTTTGT+TGG - chr6_4:84168399-84168418 Msa1000830:intron 35.0%
AATGGAAGGAAGAGAATCAA+TGG + chr6_4:84168535-84168554 None:intergenic 35.0%
TCTTGTTAGAGTTGTCATCA+AGG - chr6_4:84168557-84168576 Msa1000830:intron 35.0%
ACAACCACACTACAAACAAA+AGG + chr6_4:84168629-84168648 None:intergenic 35.0%
!!! TTTTTAATTTGCGGTCACGT+CGG - chr6_4:84168657-84168676 Msa1000830:intron 35.0%
GCGAAAAGACATAAAAAACC+TGG - chr6_4:84168832-84168851 Msa1000830:intron 35.0%
CGAGATTTGATTATGGAGTT+CGG + chr6_4:84169264-84169283 None:intergenic 35.0%
! TCGATTTTTCTTTTGAGCCA+AGG - chr6_4:84169310-84169329 Msa1000830:CDS 35.0%
ATCTCCTTCTATGGTTATGA+AGG + chr6_4:84169403-84169422 None:intergenic 35.0%
TTCATAACCATAGAAGGAGA+TGG - chr6_4:84169402-84169421 Msa1000830:intron 35.0%
CAACAGACATCGTATATATG+CGG - chr6_4:84169651-84169670 Msa1000830:intron 35.0%
!!! TAGCCCTTATTTTGACTTGA+AGG + chr6_4:84169681-84169700 None:intergenic 35.0%
!! GCAGATACAGCATCATTTTT+AGG - chr6_4:84169960-84169979 Msa1000830:intron 35.0%
TTGTACAAGGGATCTAGATT+AGG + chr6_4:84170220-84170239 None:intergenic 35.0%
AGTCCTTTCATCTTGTACAA+GGG + chr6_4:84170232-84170251 None:intergenic 35.0%
TGCCCTTTAAATTGGATTTG+GGG + chr6_4:84170296-84170315 None:intergenic 35.0%
GTGCCCTTTAAATTGGATTT+GGG + chr6_4:84170297-84170316 None:intergenic 35.0%
AGTGCCCTTTAAATTGGATT+TGG + chr6_4:84170298-84170317 None:intergenic 35.0%
ATCATGTACATTGAGTTAGG+TGG - chr6_4:84170340-84170359 Msa1000830:intron 35.0%
! ACAAATTTAGGATGAGGTGA+TGG - chr6_4:84170633-84170652 Msa1000830:intron 35.0%
CATGCAATAGCAAGAAATAC+AGG - chr6_4:84171207-84171226 Msa1000830:intron 35.0%
TTTGTAAACTGTAAGGTCAC+GGG - chr6_4:84171282-84171301 Msa1000830:intron 35.0%
ACTATATCTTGGAAGAGCTT+GGG - chr6_4:84171314-84171333 Msa1000830:intron 35.0%
CCTAAAGGATGGTATAATTG+GGG - chr6_4:84171390-84171409 Msa1000830:intron 35.0%
GATACATACATTTCACGGTT+AGG + chr6_4:84171420-84171439 None:intergenic 35.0%
TAACCATTTCACCTGAGAAT+CGG + chr6_4:84171642-84171661 None:intergenic 35.0%
AGGCTAGAGTATGTTAGTAA+CGG - chr6_4:84171782-84171801 Msa1000830:intron 35.0%
CCTCCTATATATCACTTCAA+CGG - chr6_4:84171820-84171839 Msa1000830:intron 35.0%
ACTCCGTTGAAGTGATATAT+AGG + chr6_4:84171826-84171845 None:intergenic 35.0%
! TTAGAGTAGTCTGGTAGTTT+TGG + chr6_4:84171854-84171873 None:intergenic 35.0%
TACGACAAATTAGAGTAGTC+TGG + chr6_4:84171863-84171882 None:intergenic 35.0%
GGTTTCGTATGAATTGTGTT+AGG - chr6_4:84171946-84171965 Msa1000830:intron 35.0%
TCCAAAAGATAGCACTTGTA+TGG - chr6_4:84172206-84172225 Msa1000830:intron 35.0%
! ACCATACAAGTGCTATCTTT+TGG + chr6_4:84172210-84172229 None:intergenic 35.0%
TTTGTTGGTACCACTATTGA+GGG - chr6_4:84172311-84172330 Msa1000830:intron 35.0%
! TTATCCTTTTCCCTCAATAG+TGG + chr6_4:84172324-84172343 None:intergenic 35.0%
AATTTGATGCCAGTATTTGC+TGG - chr6_4:84172416-84172435 Msa1000830:intron 35.0%
TTGTGATCACATTGTGGTAA+GGG + chr6_4:84172544-84172563 None:intergenic 35.0%
ATTGTGATCACATTGTGGTA+AGG + chr6_4:84172545-84172564 None:intergenic 35.0%
TTACCACAATGTGATCACAA+TGG - chr6_4:84172544-84172563 Msa1000830:intron 35.0%
AGGATTTACGATGCACAAAA+CGG - chr6_4:84172701-84172720 Msa1000830:intron 35.0%
!!! ATGGGCATGCAACATTTTTT+TGG + chr6_4:84172907-84172926 None:intergenic 35.0%
TATGGACAATACAAATGCAC+AGG - chr6_4:84173005-84173024 Msa1000830:intron 35.0%
GCCTTTATGAGAATTACAAC+CGG - chr6_4:84173252-84173271 Msa1000830:CDS 35.0%
CCTTTATGAGAATTACAACC+GGG - chr6_4:84173253-84173272 Msa1000830:CDS 35.0%
TGCATCTCAACTGAAGTTTG+AGG - chr6_4:84164307-84164326 Msa1000830:three_prime_UTR 40.0%
GAGCTTCATAAAATCACGGT+AGG + chr6_4:84164760-84164779 None:intergenic 40.0%
AAAACCACGGTAGGAAATCA+CGG + chr6_4:84164804-84164823 None:intergenic 40.0%
CATTTAGCGTGTGTTTGGAA+GGG + chr6_4:84164840-84164859 None:intergenic 40.0%
ACATTTAGCGTGTGTTTGGA+AGG + chr6_4:84164841-84164860 None:intergenic 40.0%
GATCACATTTAGCGTGTGTT+TGG + chr6_4:84164845-84164864 None:intergenic 40.0%
AAAATCACACACACAAGTGG+AGG - chr6_4:84164987-84165006 Msa1000830:intron 40.0%
AAAATCACACACACAAGTGG+AGG - chr6_4:84164987-84165006 Msa1000830:intron 40.0%
AAAATCACACACACAAGTGG+AGG - chr6_4:84164987-84165006 Msa1000830:intron 40.0%
AACTCGATGCTATAGCTACT+AGG - chr6_4:84165283-84165302 Msa1000830:intron 40.0%
AGCTCCAAGAACAAGACAAA+GGG - chr6_4:84165437-84165456 Msa1000830:intron 40.0%
! AATGCCCTTTGTCTTGTTCT+TGG + chr6_4:84165444-84165463 None:intergenic 40.0%
ATTATTATATGTAGGGGCCG+GGG + chr6_4:84165531-84165550 None:intergenic 40.0%
CATTATTATATGTAGGGGCC+GGG + chr6_4:84165532-84165551 None:intergenic 40.0%
GCATTATTATATGTAGGGGC+CGG + chr6_4:84165533-84165552 None:intergenic 40.0%
GTGAGCATAACTCAATTGGT+AGG + chr6_4:84165561-84165580 None:intergenic 40.0%
ACCAATTGAGTTATGCTCAC+GGG - chr6_4:84165561-84165580 Msa1000830:intron 40.0%
GTGCTCATTCATTCACTTCA+CGG - chr6_4:84165734-84165753 Msa1000830:intron 40.0%
!!! TATTAGCTTGTCTTTTGGGG+AGG - chr6_4:84165797-84165816 Msa1000830:intron 40.0%
ATACCTTGGCATATGGTCTA+TGG + chr6_4:84166504-84166523 None:intergenic 40.0%
TTCATCATGGACTTCCCATA+AGG + chr6_4:84166750-84166769 None:intergenic 40.0%
!! ATGAATAGTGGATTGCAGAG+TGG + chr6_4:84166773-84166792 None:intergenic 40.0%
TGGATCGTGAAGGTTCATTA+AGG + chr6_4:84167144-84167163 None:intergenic 40.0%
TAATGGAATGGGGTAGGTTA+TGG + chr6_4:84167466-84167485 None:intergenic 40.0%
GTTCAACCTATACTGTCTTG+TGG - chr6_4:84167887-84167906 Msa1000830:intron 40.0%
TCTAGACCACAAGACAGTAT+AGG + chr6_4:84167896-84167915 None:intergenic 40.0%
! CAATGACAGAAGTATGTCAC+GGG + chr6_4:84167951-84167970 None:intergenic 40.0%
! GCAATGACAGAAGTATGTCA+CGG + chr6_4:84167952-84167971 None:intergenic 40.0%
! GTCTGCTCTTGTTGTATTGT+TGG + chr6_4:84168361-84168380 None:intergenic 40.0%
TTGTCATCAAGGTTCATGCA+GGG - chr6_4:84168568-84168587 Msa1000830:intron 40.0%
TTTACATCTCGGATGAGCTT+TGG - chr6_4:84168795-84168814 Msa1000830:intron 40.0%
!! CTTTGGTGTTTGTCTGCATT+TGG - chr6_4:84168921-84168940 Msa1000830:intron 40.0%
AGCAATTGGAAAACAAGCAG+TGG - chr6_4:84169923-84169942 Msa1000830:intron 40.0%
GATCCCTTGTACAAGATGAA+AGG - chr6_4:84170226-84170245 Msa1000830:intron 40.0%
GAGTCCTTTCATCTTGTACA+AGG + chr6_4:84170233-84170252 None:intergenic 40.0%
! GTTCTGAATTCAATGAACCG+AGG - chr6_4:84170949-84170968 Msa1000830:intron 40.0%
TTAAGGAGAAACAGACTCCA+AGG - chr6_4:84171050-84171069 Msa1000830:intron 40.0%
!! CTCATTCTAGCTTGAAACCT+TGG + chr6_4:84171070-84171089 None:intergenic 40.0%
AGCAGTATGTTACAAGACAC+AGG - chr6_4:84171252-84171271 Msa1000830:intron 40.0%
TTGTAAACTGTAAGGTCACG+GGG - chr6_4:84171283-84171302 Msa1000830:intron 40.0%
CACTATATCTTGGAAGAGCT+TGG - chr6_4:84171313-84171332 Msa1000830:intron 40.0%
CTATATCTTGGAAGAGCTTG+GGG - chr6_4:84171315-84171334 Msa1000830:intron 40.0%
GCAAAGACAACTCGTGAAAA+AGG + chr6_4:84171342-84171361 None:intergenic 40.0%
CCCCAATTATACCATCCTTT+AGG + chr6_4:84171393-84171412 None:intergenic 40.0%
TTCATAACACTCCGATTCTC+AGG - chr6_4:84171628-84171647 Msa1000830:intron 40.0%
TTGGAGTTCGGTCGATAATA+AGG - chr6_4:84171669-84171688 Msa1000830:intron 40.0%
TGGAGTTCGGTCGATAATAA+GGG - chr6_4:84171670-84171689 Msa1000830:intron 40.0%
GGCTAGAGTATGTTAGTAAC+GGG - chr6_4:84171783-84171802 Msa1000830:intron 40.0%
GCTAGAGTATGTTAGTAACG+GGG - chr6_4:84171784-84171803 Msa1000830:intron 40.0%
! TAGTAACGGGGATTCAACTA+TGG - chr6_4:84171796-84171815 Msa1000830:intron 40.0%
CCGTTGAAGTGATATATAGG+AGG + chr6_4:84171823-84171842 None:intergenic 40.0%
! GAGGGTGTATATAGCATAAC+AGG + chr6_4:84172242-84172261 None:intergenic 40.0%
CTTTGTTGGTACCACTATTG+AGG - chr6_4:84172310-84172329 Msa1000830:intron 40.0%
ATATGAAGCCATGGGATTAG+TGG + chr6_4:84172499-84172518 None:intergenic 40.0%
ACACCATTGTGATCACATTG+TGG + chr6_4:84172550-84172569 None:intergenic 40.0%
ACAATGTGATCACAATGGTG+TGG - chr6_4:84172549-84172568 Msa1000830:intron 40.0%
AATGTTGCATGCCCATTAGT+AGG - chr6_4:84172911-84172930 Msa1000830:intron 40.0%
ATAGAACACAGTCCTGATAG+TGG + chr6_4:84172988-84173007 None:intergenic 40.0%
ACTATCAGGACTGTGTTCTA+TGG - chr6_4:84172987-84173006 Msa1000830:intron 40.0%
CCATTCAGTCCCATCAATAA+AGG + chr6_4:84173111-84173130 None:intergenic 40.0%
CCTTTATTGATGGGACTGAA+TGG - chr6_4:84173108-84173127 Msa1000830:intron 40.0%
CCCGGTTGTAATTCTCATAA+AGG + chr6_4:84173256-84173275 None:intergenic 40.0%
TGCCCACTAAACTTTGATGC+GGG + chr6_4:84164475-84164494 None:intergenic 45.0%
GTGCCCACTAAACTTTGATG+CGG + chr6_4:84164476-84164495 None:intergenic 45.0%
!!! TGCTTTTGGGGCTGTAAACT+CGG + chr6_4:84164712-84164731 None:intergenic 45.0%
AGTTTACAGCCCCAAAAGCA+CGG - chr6_4:84164712-84164731 Msa1000830:intron 45.0%
TTCACTGAACGTCATGACCA+AGG + chr6_4:84165027-84165046 None:intergenic 45.0%
! TAGGTTGAACGTCATGACCA+AGG + chr6_4:84165205-84165224 None:intergenic 45.0%
! GACATTTTGCCAGTTGAGCT+AGG - chr6_4:84165233-84165252 Msa1000830:intron 45.0%
GAGCTCCAAGAACAAGACAA+AGG - chr6_4:84165436-84165455 Msa1000830:intron 45.0%
TCCCGTGAGCATAACTCAAT+TGG + chr6_4:84165565-84165584 None:intergenic 45.0%
GGACAGTCATGATTCAGAGT+AGG - chr6_4:84166658-84166677 Msa1000830:intron 45.0%
GATTGCAGAGTGGTTCATCA+TGG + chr6_4:84166763-84166782 None:intergenic 45.0%
! TTAGGTGAGTTGGATCGTGA+AGG + chr6_4:84167154-84167173 None:intergenic 45.0%
CAGTTGGCCATATTGCTCTA+TGG + chr6_4:84167402-84167421 None:intergenic 45.0%
CATAGAGCAATATGGCCAAC+TGG - chr6_4:84167400-84167419 Msa1000830:intron 45.0%
ACCTATGATTACGCGCACTA+TGG - chr6_4:84168130-84168149 Msa1000830:CDS 45.0%
ACCATAGTGCGCGTAATCAT+AGG + chr6_4:84168134-84168153 None:intergenic 45.0%
! CCGTTTCGAGTAGAACGTAT+CGG + chr6_4:84168330-84168349 None:intergenic 45.0%
CCGATACGTTCTACTCGAAA+CGG - chr6_4:84168327-84168346 Msa1000830:intron 45.0%
GTTGTCATCAAGGTTCATGC+AGG - chr6_4:84168567-84168586 Msa1000830:intron 45.0%
TGTCATCAAGGTTCATGCAG+GGG - chr6_4:84168569-84168588 Msa1000830:intron 45.0%
CTCAATTTGGTCTGACATCC+AGG + chr6_4:84168853-84168872 None:intergenic 45.0%
TGAGGACTCTGCACCAATAA+GGG + chr6_4:84169114-84169133 None:intergenic 45.0%
TTGAGGACTCTGCACCAATA+AGG + chr6_4:84169115-84169134 None:intergenic 45.0%
TATTGGTGCAGAGTCCTCAA+TGG - chr6_4:84169115-84169134 Msa1000830:CDS 45.0%
AGTCCTCAATGGTACGATTC+TGG - chr6_4:84169126-84169145 Msa1000830:CDS 45.0%
GTCCTCAATGGTACGATTCT+GGG - chr6_4:84169127-84169146 Msa1000830:CDS 45.0%
ATCCCAGAATCGTACCATTG+AGG + chr6_4:84169132-84169151 None:intergenic 45.0%
GTCTGTCTCTGACTACATTG+AGG + chr6_4:84169233-84169252 None:intergenic 45.0%
ATCTGCACCATCTCCTTCTA+TGG + chr6_4:84169412-84169431 None:intergenic 45.0%
GGGAATCCATTGGGAACATA+TGG - chr6_4:84169480-84169499 Msa1000830:intron 45.0%
GCTGAACCATATGTTCCCAA+TGG + chr6_4:84169489-84169508 None:intergenic 45.0%
!! GCTTGTTTTCCAATTGCTCC+AGG + chr6_4:84169921-84169940 None:intergenic 45.0%
CAATGCGCTCTCTCTATTTG+AGG - chr6_4:84170082-84170101 Msa1000830:intron 45.0%
! ATGGTAACCCAGTCTAAGGT+AGG - chr6_4:84170652-84170671 Msa1000830:intron 45.0%
! TGGTAACCCAGTCTAAGGTA+GGG - chr6_4:84170653-84170672 Msa1000830:intron 45.0%
AGACATCCCTACCTTAGACT+GGG + chr6_4:84170662-84170681 None:intergenic 45.0%
! TCTAAGGTAGGGATGTCTCT+AGG - chr6_4:84170664-84170683 Msa1000830:intron 45.0%
CTAAGGTAGGGATGTCTCTA+GGG - chr6_4:84170665-84170684 Msa1000830:intron 45.0%
! AGTATTGGGTTCGGAGAATC+TGG + chr6_4:84170755-84170774 None:intergenic 45.0%
ACTCCGATTCTCAGGTGAAA+TGG - chr6_4:84171636-84171655 Msa1000830:intron 45.0%
GGTACCACTATTGAGGGAAA+AGG - chr6_4:84172317-84172336 Msa1000830:intron 45.0%
TGTACACTACCACCACTATC+AGG - chr6_4:84172973-84172992 Msa1000830:intron 45.0%
CAATACAAATGCACAGGACC+TGG - chr6_4:84173011-84173030 Msa1000830:intron 45.0%
!!! GTTTTGCAGGGAGAGTATCA+TGG - chr6_4:84173039-84173058 Msa1000830:intron 45.0%
!! AAAAAAATATAAGAATATAA+TGG + chr6_4:84165320-84165339 None:intergenic 5.0%
!!! GAATATAATTTTATTTTTTT+AGG + chr6_4:84165344-84165363 None:intergenic 5.0%
!!! TTTTTGATAAATTAAAATTT+AGG + chr6_4:84167172-84167191 None:intergenic 5.0%
!!! ATAATATTTGTTTTTTTTTT+TGG - chr6_4:84172138-84172157 Msa1000830:intron 5.0%
!! TTTCAAAATAAAATAAATAT+TGG + chr6_4:84172264-84172283 None:intergenic 5.0%
GGCCCGCATCAAAGTTTAGT+GGG - chr6_4:84164470-84164489 Msa1000830:CDS 50.0%
GTGGCTCAAAAGCTCCACTT+TGG + chr6_4:84164782-84164801 None:intergenic 50.0%
! ACACACACAAGTGGAGGTGT+CGG - chr6_4:84164993-84165012 Msa1000830:intron 50.0%
! ACACACACAAGTGGAGGTGT+CGG - chr6_4:84164993-84165012 Msa1000830:intron 50.0%
! ACACACACAAGTGGAGGTGT+CGG - chr6_4:84164993-84165012 Msa1000830:intron 50.0%
TCCACAAGTCCTAGCTCAAC+TGG + chr6_4:84165245-84165264 None:intergenic 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG - chr6_4:84165497-84165516 Msa1000830:intron 50.0%
CCTTGGCATATGGTCTATGG+TGG + chr6_4:84166501-84166520 None:intergenic 50.0%
CCACCATAGACCATATGCCA+AGG - chr6_4:84166498-84166517 Msa1000830:intron 50.0%
! AATGGATTCCCTCTTGGACC+AGG + chr6_4:84169471-84169490 None:intergenic 50.0%
TGGTCCAAGAGGGAATCCAT+TGG - chr6_4:84169470-84169489 Msa1000830:intron 50.0%
GGTCCAAGAGGGAATCCATT+GGG - chr6_4:84169471-84169490 Msa1000830:intron 50.0%
! GTTCCCAATGGATTCCCTCT+TGG + chr6_4:84169477-84169496 None:intergenic 50.0%
! ACTTTTCCTCTTCCTGCACC+TGG - chr6_4:84169900-84169919 Msa1000830:intron 50.0%
TTTCCAATTGCTCCAGGTGC+AGG + chr6_4:84169915-84169934 None:intergenic 50.0%
! GGTGATGGTAACCCAGTCTA+AGG - chr6_4:84170648-84170667 Msa1000830:intron 50.0%
GAGACATCCCTACCTTAGAC+TGG + chr6_4:84170663-84170682 None:intergenic 50.0%
!! ACAGGAGCACTAACAGCACA+AGG - chr6_4:84171225-84171244 Msa1000830:intron 50.0%
GAGCACTAACAGCACAAGGA+AGG - chr6_4:84171229-84171248 Msa1000830:intron 50.0%
!! GGGTCAGGAGCACTATATCT+TGG - chr6_4:84171303-84171322 Msa1000830:intron 50.0%
TGTGTGAGCCACTAATCCCA+TGG - chr6_4:84172488-84172507 Msa1000830:intron 50.0%
!! GAACACAGTCCTGATAGTGG+TGG + chr6_4:84172985-84173004 None:intergenic 50.0%
! GACCTGGAGCAAGTTTTGCA+GGG - chr6_4:84173027-84173046 Msa1000830:intron 50.0%
GGGCCCGCATCAAAGTTTAG+TGG - chr6_4:84164469-84164488 Msa1000830:CDS 55.0%
! TTACAGCCCCAAAAGCACGG+TGG - chr6_4:84164715-84164734 Msa1000830:intron 55.0%
! TACAGCCCCAAAAGCACGGT+GGG - chr6_4:84164716-84164735 Msa1000830:intron 55.0%
! ATCACGCCCACCGTGCTTTT+GGG + chr6_4:84164725-84164744 None:intergenic 55.0%
! AATCACGCCCACCGTGCTTT+TGG + chr6_4:84164726-84164745 None:intergenic 55.0%
ACCACGGTAGGAAATCACGG+TGG + chr6_4:84164801-84164820 None:intergenic 55.0%
!! CACACACAAGTGGAGGTGTC+GGG - chr6_4:84164994-84165013 Msa1000830:intron 55.0%
!! ACACACAAGTGGAGGTGTCG+GGG - chr6_4:84164995-84165014 Msa1000830:intron 55.0%
!! CACACACAAGTGGAGGTGTC+GGG - chr6_4:84164994-84165013 Msa1000830:intron 55.0%
!! ACACACAAGTGGAGGTGTCG+GGG - chr6_4:84164995-84165014 Msa1000830:intron 55.0%
!!! GTGGAGGTGTCGGGGTTTTT+TGG - chr6_4:84165114-84165133 Msa1000830:intron 55.0%
!! CACACACAAGTGGAGGTGTC+GGG - chr6_4:84164994-84165013 Msa1000830:intron 55.0%
!! ACACACAAGTGGAGGTGTCG+GGG - chr6_4:84164995-84165014 Msa1000830:intron 55.0%
GCCAGTTGAGCTAGGACTTG+TGG - chr6_4:84165241-84165260 Msa1000830:intron 55.0%
CTGCAACACCTGGTCCAAGA+GGG - chr6_4:84169460-84169479 Msa1000830:intron 55.0%
ATTGCTCCAGGTGCAGGAAG+AGG + chr6_4:84169909-84169928 None:intergenic 55.0%
CTTCCTGCACCTGGAGCAAT+TGG - chr6_4:84169909-84169928 Msa1000830:intron 55.0%
AACTGTAAGGTCACGGGGTC+AGG - chr6_4:84171288-84171307 Msa1000830:intron 55.0%
!! ATGCGCTGACTGCAGAGCAA+CGG - chr6_4:84172649-84172668 Msa1000830:intron 55.0%
! GGACCTGGAGCAAGTTTTGC+AGG - chr6_4:84173026-84173045 Msa1000830:intron 55.0%
! CTCCCTGCAAAACTTGCTCC+AGG + chr6_4:84173032-84173051 None:intergenic 55.0%
! TCACGCCCACCGTGCTTTTG+GGG + chr6_4:84164724-84164743 None:intergenic 60.0%
GCCACCGTGATTTCCTACCG+TGG - chr6_4:84164797-84164816 Msa1000830:intron 60.0%
!! AGGTGTCGGGGTTCGAACCT+TGG - chr6_4:84165007-84165026 Msa1000830:intron 60.0%
!! AGGTGTCGGGGTTCGAACCT+TGG - chr6_4:84165007-84165026 Msa1000830:intron 60.0%
GGTGACACTGCTGCAACACC+TGG - chr6_4:84169450-84169469 Msa1000830:intron 60.0%
GCTGCAACACCTGGTCCAAG+AGG - chr6_4:84169459-84169478 Msa1000830:intron 60.0%
GATGCGGGCCCCTCGTCTAA+TGG + chr6_4:84164460-84164479 None:intergenic 65.0%
GGTGTCCGGAGTTCGAACCC+CGG - chr6_4:84165511-84165530 Msa1000830:intron 65.0%
AGGGGCCGGGGTTCGAACTC+CGG + chr6_4:84165519-84165538 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 84164275 84173323 84164275 ID=Msa1000830;Name=Msa1000830
chr6_4 mRNA 84164275 84173323 84164275 ID=Msa1000830-mRNA-1;Parent=Msa1000830;Name=Msa1000830-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.8|0.66|0.83|1|1|6|181|404
chr6_4 exon 84164275 84164603 84164275 ID=Msa1000830-mRNA-1:exon:16352;Parent=Msa1000830-mRNA-1
chr6_4 exon 84166168 84166403 84166168 ID=Msa1000830-mRNA-1:exon:16351;Parent=Msa1000830-mRNA-1
chr6_4 exon 84167495 84167701 84167495 ID=Msa1000830-mRNA-1:exon:16350;Parent=Msa1000830-mRNA-1
chr6_4 exon 84168038 84168227 84168038 ID=Msa1000830-mRNA-1:exon:16349;Parent=Msa1000830-mRNA-1
chr6_4 exon 84169000 84169338 84169000 ID=Msa1000830-mRNA-1:exon:16348;Parent=Msa1000830-mRNA-1
chr6_4 exon 84173229 84173323 84173229 ID=Msa1000830-mRNA-1:exon:16347;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84173229 84173323 84173229 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84169000 84169338 84169000 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84168038 84168227 84168038 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84167495 84167701 84167495 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84166168 84166403 84166168 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 CDS 84164456 84164603 84164456 ID=Msa1000830-mRNA-1:cds;Parent=Msa1000830-mRNA-1
chr6_4 three_prime_UTR 84164275 84164455 84164275 ID=Msa1000830-mRNA-1:three_prime_utr;Parent=Msa1000830-mRNA-1
Gene Sequence

>Msa1000830

ATGGCACAGGCGAAAGCAATTGAATTGAATGGTGCATCTCAACTGAAGTTTGAGGAGAAAAGAAACCGTGAAGATATGAAGGGAAAAAACATAAGCATGTTGTTATTTCTTCTTCTTGTACAAAATCTCACCACAATACATTGTCATACAAAAGGAATTCGACCGATACGTTCTACTCGAAACGGTTTATCGACCAACAATACAACAAGAGCAGACTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTAATCTTAAACATACTGTTTACAAGGCTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTTGGAGATTTTGATACAATTCAAGATGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTAAAATCCTTCATAACCATAGAAGGAGATGGTGCAGATACAACAATTGTTCAATGGGGTGACACTGCTGCAACACCTGGTCCAAGAGGGAATCCATTGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTTTTCCTCTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTGGCATTTAGAATTTCAGCAGATACAGCATCATTTTTAGGGTGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTATATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCGCTCTCTCTATTTGAGGGATGTCACGTGCATGCAATAGCAAGAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTAAACTGTAAGGTCACGGGGTCAGGAGCACTATATCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTGTCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGAGCAAGTTTTGCAGGGAGAGTATCATGGTCAAGAGAACTTACTGATGAAGAAGCTAGACCTTTTCTTTCACTTACCTTTATTGATGGGACTGAATGGATCGATTTTTAG
Protein sequence

>Msa1000830

MAQAKAIELNGASQLKFEEKRNREDMKGKNISMLLFLLLVQNLTTIHCHTKGIRPIRSTRNGLSTNNTTRADLAEQQFMKWVSFVGNLKHTVYKAAKNKLFASYTLHVDKNPSFGDFDTIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGDGADTTIVQWGDTAATPGPRGNPLGTYGSATFAVNSPYFIAKNITFKNTFPLPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEARPFLSLTFIDGTEWIDF*