Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970730 | XP_024626091.1 | 85.124 | 121 | 11 | 1 | 1 | 114 | 464 | 584 | 1.91e-61 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970730 | sp|P08770|TRA1_MAIZE | 40.323 | 124 | 59 | 4 | 20 | 135 | 635 | 751 | 1.35e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970730 | A0A6P4DD16 | 56.875 | 160 | 55 | 4 | 1 | 148 | 233 | 390 | 1.73e-47 | 168 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0286170 | Msa0970730 | 0.847251 | 1.301812e-59 | -8.615850e-47 |
| Msa0325070 | Msa0970730 | 0.867334 | 1.477758e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970730 | MtrunA17_Chr5g0402891 | 36.719 | 128 | 69 | 3 | 16 | 136 | 457 | 579 | 1.42e-19 | 85.1 |
| Msa0970730 | MtrunA17_Chr8g0354631 | 44.554 | 101 | 44 | 3 | 43 | 136 | 608 | 703 | 1.09e-18 | 82.4 |
| Msa0970730 | MtrunA17_Chr4g0052611 | 56.061 | 66 | 22 | 1 | 79 | 137 | 140 | 205 | 1.29e-18 | 80.1 |
| Msa0970730 | MtrunA17_Chr8g0359341 | 40.541 | 111 | 52 | 3 | 33 | 136 | 604 | 707 | 3.05e-18 | 81.3 |
| Msa0970730 | MtrunA17_Chr5g0408131 | 43.820 | 89 | 41 | 2 | 54 | 135 | 132 | 218 | 4.67e-18 | 78.6 |
| Msa0970730 | MtrunA17_Chr2g0308821 | 37.838 | 111 | 55 | 3 | 33 | 136 | 556 | 659 | 2.50e-15 | 72.8 |
| Msa0970730 | MtrunA17_Chr7g0263231 | 36.154 | 130 | 65 | 5 | 16 | 136 | 949 | 1069 | 9.20e-15 | 71.2 |
| Msa0970730 | MtrunA17_Chr4g0003151 | 33.058 | 121 | 67 | 3 | 36 | 146 | 557 | 673 | 1.30e-14 | 70.9 |
| Msa0970730 | MtrunA17_Chr2g0333261 | 32.308 | 130 | 73 | 4 | 13 | 135 | 557 | 678 | 1.46e-14 | 70.5 |
| Msa0970730 | MtrunA17_Chr7g0263261 | 36.607 | 112 | 55 | 4 | 34 | 136 | 906 | 1010 | 2.17e-14 | 70.1 |
| Msa0970730 | MtrunA17_Chr3g0108001 | 43.836 | 73 | 31 | 2 | 76 | 141 | 7 | 76 | 5.11e-14 | 64.7 |
| Msa0970730 | MtrunA17_Chr4g0053391 | 39.796 | 98 | 39 | 4 | 54 | 141 | 160 | 247 | 7.75e-14 | 67.8 |
| Msa0970730 | MtrunA17_Chr1g0162951 | 46.667 | 60 | 29 | 1 | 88 | 147 | 1 | 57 | 2.39e-13 | 61.6 |
| Msa0970730 | MtrunA17_Chr8g0383211 | 26.619 | 139 | 76 | 4 | 15 | 135 | 505 | 635 | 2.52e-11 | 61.2 |
| Msa0970730 | MtrunA17_Chr8g0383061 | 36.000 | 100 | 54 | 3 | 44 | 135 | 100 | 197 | 3.02e-11 | 60.1 |
| Msa0970730 | MtrunA17_Chr8g0390371 | 41.096 | 73 | 33 | 2 | 76 | 141 | 11 | 80 | 9.00e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970730 | AT3G42170.1 | 37.383 | 107 | 55 | 4 | 36 | 135 | 573 | 674 | 3.59e-12 | 63.9 |
| Msa0970730 | AT3G42170.2 | 36.522 | 115 | 61 | 4 | 28 | 135 | 543 | 652 | 3.93e-12 | 63.9 |
Find 30 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCACCCTGTGTCTCTTGT+TGG | 0.332360 | 6_4:-2388915 | None:intergenic |
| AGAACTAGTGCTGATCAAAA+TGG | 0.335518 | 6_4:+2388879 | Msa0970730:CDS |
| AGGGGAGAGCAATTGGAGTT+TGG | 0.335928 | 6_4:+2390468 | Msa0970730:CDS |
| TCTGAAGCCACAGTAGATAT+TGG | 0.367386 | 6_4:-2389131 | None:intergenic |
| AGAGTATGCTGATATGCTTC+AGG | 0.386838 | 6_4:+2388833 | Msa0970730:CDS |
| CTTTAATTTGTGGTGGTGAT+TGG | 0.392374 | 6_4:+2389225 | Msa0970730:CDS |
| GTCTTGAAGGGGAGAGCAAT+TGG | 0.409399 | 6_4:+2390461 | Msa0970730:CDS |
| ATGAGTAAAGATTAAGTTGA+AGG | 0.409636 | 6_4:+2390409 | Msa0970730:intron |
| GACATATGACCATTATCGTT+AGG | 0.427964 | 6_4:-2389026 | None:intergenic |
| ACTTACAACCCTAACGATAA+TGG | 0.429827 | 6_4:+2389017 | Msa0970730:CDS |
| CCACCATTCCAAGGCACAAA+AGG | 0.447229 | 6_4:-2389048 | None:intergenic |
| ATATAGAGTATTATCTCATA+TGG | 0.462323 | 6_4:+2389088 | Msa0970730:intron |
| ACATATGACCATTATCGTTA+GGG | 0.488004 | 6_4:-2389025 | None:intergenic |
| GAACTAGTGCTGATCAAAAT+GGG | 0.493299 | 6_4:+2388880 | Msa0970730:CDS |
| ACCGTTGAAACTTTAATTTG+TGG | 0.507663 | 6_4:+2389215 | Msa0970730:CDS |
| CTTCAGGAGCATAGAGAAGA+AGG | 0.509895 | 6_4:+2388849 | Msa0970730:CDS |
| TGCTATTCCAATATCTACTG+TGG | 0.523521 | 6_4:+2389124 | Msa0970730:CDS |
| ACCACAAATTAAAGTTTCAA+CGG | 0.539404 | 6_4:-2389216 | None:intergenic |
| GAAGCATATCAGCATACTCT+AGG | 0.542630 | 6_4:-2388830 | None:intergenic |
| ATTGGCTTCGAGTATTGCAT+GGG | 0.548627 | 6_4:+2389243 | Msa0970730:CDS |
| GATTGGCTTCGAGTATTGCA+TGG | 0.550233 | 6_4:+2389242 | Msa0970730:CDS |
| ATTCAACTTCCACCATTCCA+AGG | 0.562144 | 6_4:-2389057 | None:intergenic |
| TTATCGTTAGGGTTGTAAGT+TGG | 0.583804 | 6_4:-2389014 | None:intergenic |
| TAGAAGAATGTAGAGAAGCT+CGG | 0.609825 | 6_4:-2389193 | None:intergenic |
| TTGGAGCCAACAAGAGACAC+AGG | 0.615353 | 6_4:+2388909 | Msa0970730:CDS |
| TGATCAAAATGGGCTGACAT+TGG | 0.630883 | 6_4:+2388890 | Msa0970730:CDS |
| GTTGAAACTTTAATTTGTGG+TGG | 0.639553 | 6_4:+2389218 | Msa0970730:CDS |
| GTTGAAGGCTGTAGCAAATG+TGG | 0.642341 | 6_4:+2390424 | Msa0970730:CDS |
| TGGAGCCAACAAGAGACACA+GGG | 0.732152 | 6_4:+2388910 | Msa0970730:CDS |
| AGCCAACAAGAGACACAGGG+TGG | 0.786904 | 6_4:+2388913 | Msa0970730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGAAAATATATTACTTT+AGG | - | chr6_4:2389281-2389300 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTATTAATAGG+TGG | + | chr6_4:2389349-2389368 | Msa0970730:intron | 15.0% |
| !! | TGATGTCATAATATAAATTA+TGG | - | chr6_4:2389833-2389852 | None:intergenic | 15.0% |
| !! | ATCAATAAACAACTTAATAA+AGG | - | chr6_4:2390289-2390308 | None:intergenic | 15.0% |
| !! | AAGAGAAAATATATTACTTT+AGG | - | chr6_4:2389281-2389300 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTATTAATAGG+TGG | + | chr6_4:2389349-2389368 | Msa0970730:intron | 15.0% |
| !! | TGATGTCATAATATAAATTA+TGG | - | chr6_4:2389833-2389852 | None:intergenic | 15.0% |
| !! | ATCAATAAACAACTTAATAA+AGG | - | chr6_4:2390289-2390308 | None:intergenic | 15.0% |
| !!! | ATATAGAGTATTATCTCATA+TGG | + | chr6_4:2389088-2389107 | Msa0970730:intron | 20.0% |
| !! | ATAAGAAAAAAAGATGCATT+GGG | + | chr6_4:2389968-2389987 | Msa0970730:intron | 20.0% |
| !!! | TAAAGATAGCATTTTTGTAT+TGG | + | chr6_4:2390093-2390112 | Msa0970730:intron | 20.0% |
| !!! | AAAGATAGCATTTTTGTATT+GGG | + | chr6_4:2390094-2390113 | Msa0970730:intron | 20.0% |
| !!! | ATATAGAGTATTATCTCATA+TGG | + | chr6_4:2389088-2389107 | Msa0970730:intron | 20.0% |
| !! | ATAAGAAAAAAAGATGCATT+GGG | + | chr6_4:2389968-2389987 | Msa0970730:intron | 20.0% |
| !!! | TAAAGATAGCATTTTTGTAT+TGG | + | chr6_4:2390093-2390112 | Msa0970730:intron | 20.0% |
| !!! | AAAGATAGCATTTTTGTATT+GGG | + | chr6_4:2390094-2390113 | Msa0970730:intron | 20.0% |
| ! | ACCACAAATTAAAGTTTCAA+CGG | - | chr6_4:2389219-2389238 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr6_4:2389500-2389519 | None:intergenic | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr6_4:2389690-2389709 | Msa0970730:intron | 25.0% |
| ! | TATGATGAATTTGAGTGATT+GGG | - | chr6_4:2389787-2389806 | None:intergenic | 25.0% |
| ! | ATATGATGAATTTGAGTGAT+TGG | - | chr6_4:2389788-2389807 | None:intergenic | 25.0% |
| ! | GATAAGAAAAAAAGATGCAT+TGG | + | chr6_4:2389967-2389986 | Msa0970730:intron | 25.0% |
| ! | AAGCTTATGAAATCTTCATA+AGG | + | chr6_4:2390156-2390175 | Msa0970730:intron | 25.0% |
| ! | CAACTATGATATGACATTTA+CGG | + | chr6_4:2390194-2390213 | Msa0970730:intron | 25.0% |
| ! | AACTATGATATGACATTTAC+GGG | + | chr6_4:2390195-2390214 | Msa0970730:intron | 25.0% |
| !! | GCTAAAAGCATAACAAAAAA+AGG | - | chr6_4:2390252-2390271 | None:intergenic | 25.0% |
| !! | ATTGATATGTAGCATTTTTC+AGG | + | chr6_4:2390303-2390322 | Msa0970730:intron | 25.0% |
| !!! | ATGAGTAAAGATTAAGTTGA+AGG | + | chr6_4:2390409-2390428 | Msa0970730:intron | 25.0% |
| !! | TGAATACAATTTTGTCTTGA+AGG | + | chr6_4:2390448-2390467 | Msa0970730:CDS | 25.0% |
| !! | GAATACAATTTTGTCTTGAA+GGG | + | chr6_4:2390449-2390468 | Msa0970730:CDS | 25.0% |
| !! | AATACAATTTTGTCTTGAAG+GGG | + | chr6_4:2390450-2390469 | Msa0970730:CDS | 25.0% |
| ! | ACCACAAATTAAAGTTTCAA+CGG | - | chr6_4:2389219-2389238 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr6_4:2389500-2389519 | None:intergenic | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr6_4:2389690-2389709 | Msa0970730:intron | 25.0% |
| ! | TATGATGAATTTGAGTGATT+GGG | - | chr6_4:2389787-2389806 | None:intergenic | 25.0% |
| ! | ATATGATGAATTTGAGTGAT+TGG | - | chr6_4:2389788-2389807 | None:intergenic | 25.0% |
| ! | GATAAGAAAAAAAGATGCAT+TGG | + | chr6_4:2389967-2389986 | Msa0970730:intron | 25.0% |
| ! | AAGCTTATGAAATCTTCATA+AGG | + | chr6_4:2390156-2390175 | Msa0970730:intron | 25.0% |
| ! | CAACTATGATATGACATTTA+CGG | + | chr6_4:2390194-2390213 | Msa0970730:intron | 25.0% |
| ! | AACTATGATATGACATTTAC+GGG | + | chr6_4:2390195-2390214 | Msa0970730:intron | 25.0% |
| !! | GCTAAAAGCATAACAAAAAA+AGG | - | chr6_4:2390252-2390271 | None:intergenic | 25.0% |
| !! | ATTGATATGTAGCATTTTTC+AGG | + | chr6_4:2390303-2390322 | Msa0970730:intron | 25.0% |
| !!! | ATGAGTAAAGATTAAGTTGA+AGG | + | chr6_4:2390409-2390428 | Msa0970730:intron | 25.0% |
| !! | TGAATACAATTTTGTCTTGA+AGG | + | chr6_4:2390448-2390467 | Msa0970730:CDS | 25.0% |
| !! | GAATACAATTTTGTCTTGAA+GGG | + | chr6_4:2390449-2390468 | Msa0970730:CDS | 25.0% |
| !! | AATACAATTTTGTCTTGAAG+GGG | + | chr6_4:2390450-2390469 | Msa0970730:CDS | 25.0% |
| ACATATGACCATTATCGTTA+GGG | - | chr6_4:2389028-2389047 | None:intergenic | 30.0% | |
| !! | ACCGTTGAAACTTTAATTTG+TGG | + | chr6_4:2389215-2389234 | Msa0970730:CDS | 30.0% |
| !! | GTTGAAACTTTAATTTGTGG+TGG | + | chr6_4:2389218-2389237 | Msa0970730:CDS | 30.0% |
| ! | TTTTTATTAATAGGTGGAGC+AGG | + | chr6_4:2389355-2389374 | Msa0970730:intron | 30.0% |
| TTATTCCCTTGATGTTAAGT+AGG | + | chr6_4:2389395-2389414 | Msa0970730:intron | 30.0% | |
| AAATTGACAAGAACCTATTG+TGG | + | chr6_4:2389435-2389454 | Msa0970730:intron | 30.0% | |
| AGTGATATCAAATCCACAAT+AGG | - | chr6_4:2389451-2389470 | None:intergenic | 30.0% | |
| AGATTGTGTACCTTTGAATT+AGG | + | chr6_4:2389553-2389572 | Msa0970730:intron | 30.0% | |
| CTTTCATCAACCTAATTCAA+AGG | - | chr6_4:2389566-2389585 | None:intergenic | 30.0% | |
| AGAATGATTAACCGTCTAAT+GGG | + | chr6_4:2389667-2389686 | Msa0970730:intron | 30.0% | |
| ! | ATTGGGCTTTTGTTACTAAA+TGG | - | chr6_4:2389770-2389789 | None:intergenic | 30.0% |
| AAATGCAAACAATCACATGT+TGG | - | chr6_4:2389909-2389928 | None:intergenic | 30.0% | |
| ! | AAGCTTTTGTGGATATATGT+TGG | + | chr6_4:2390070-2390089 | Msa0970730:intron | 30.0% |
| ! | CATGCTATATTTCTAATCAG+TGG | - | chr6_4:2390126-2390145 | None:intergenic | 30.0% |
| ACATATGACCATTATCGTTA+GGG | - | chr6_4:2389028-2389047 | None:intergenic | 30.0% | |
| !! | ACCGTTGAAACTTTAATTTG+TGG | + | chr6_4:2389215-2389234 | Msa0970730:CDS | 30.0% |
| !! | GTTGAAACTTTAATTTGTGG+TGG | + | chr6_4:2389218-2389237 | Msa0970730:CDS | 30.0% |
| ! | TTTTTATTAATAGGTGGAGC+AGG | + | chr6_4:2389355-2389374 | Msa0970730:intron | 30.0% |
| TTATTCCCTTGATGTTAAGT+AGG | + | chr6_4:2389395-2389414 | Msa0970730:intron | 30.0% | |
| AAATTGACAAGAACCTATTG+TGG | + | chr6_4:2389435-2389454 | Msa0970730:intron | 30.0% | |
| AGTGATATCAAATCCACAAT+AGG | - | chr6_4:2389451-2389470 | None:intergenic | 30.0% | |
| AGATTGTGTACCTTTGAATT+AGG | + | chr6_4:2389553-2389572 | Msa0970730:intron | 30.0% | |
| CTTTCATCAACCTAATTCAA+AGG | - | chr6_4:2389566-2389585 | None:intergenic | 30.0% | |
| AGAATGATTAACCGTCTAAT+GGG | + | chr6_4:2389667-2389686 | Msa0970730:intron | 30.0% | |
| ! | ATTGGGCTTTTGTTACTAAA+TGG | - | chr6_4:2389770-2389789 | None:intergenic | 30.0% |
| AAATGCAAACAATCACATGT+TGG | - | chr6_4:2389909-2389928 | None:intergenic | 30.0% | |
| ! | AAGCTTTTGTGGATATATGT+TGG | + | chr6_4:2390070-2390089 | Msa0970730:intron | 30.0% |
| ! | CATGCTATATTTCTAATCAG+TGG | - | chr6_4:2390126-2390145 | None:intergenic | 30.0% |
| !! | AGAACTAGTGCTGATCAAAA+TGG | + | chr6_4:2388879-2388898 | Msa0970730:CDS | 35.0% |
| !! | GAACTAGTGCTGATCAAAAT+GGG | + | chr6_4:2388880-2388899 | Msa0970730:CDS | 35.0% |
| ! | TGAACTTCAGATTTTACAGC+AGG | - | chr6_4:2388978-2388997 | None:intergenic | 35.0% |
| TTATCGTTAGGGTTGTAAGT+TGG | - | chr6_4:2389017-2389036 | None:intergenic | 35.0% | |
| ACTTACAACCCTAACGATAA+TGG | + | chr6_4:2389017-2389036 | Msa0970730:CDS | 35.0% | |
| GACATATGACCATTATCGTT+AGG | - | chr6_4:2389029-2389048 | None:intergenic | 35.0% | |
| TGCTATTCCAATATCTACTG+TGG | + | chr6_4:2389124-2389143 | Msa0970730:CDS | 35.0% | |
| TAGAAGAATGTAGAGAAGCT+CGG | - | chr6_4:2389196-2389215 | None:intergenic | 35.0% | |
| !! | CTTTAATTTGTGGTGGTGAT+TGG | + | chr6_4:2389225-2389244 | Msa0970730:CDS | 35.0% |
| GGGAATAATGTGATTTCTGT+CGG | - | chr6_4:2389383-2389402 | None:intergenic | 35.0% | |
| ACGTACCTACTTAACATCAA+GGG | - | chr6_4:2389403-2389422 | None:intergenic | 35.0% | |
| AACGTACCTACTTAACATCA+AGG | - | chr6_4:2389404-2389423 | None:intergenic | 35.0% | |
| ! | CGGTTAATCATTCTGAAGAT+TGG | - | chr6_4:2389661-2389680 | None:intergenic | 35.0% |
| CAGAATGATTAACCGTCTAA+TGG | + | chr6_4:2389666-2389685 | Msa0970730:intron | 35.0% | |
| TTAAACGTCATCCCATTAGA+CGG | - | chr6_4:2389681-2389700 | None:intergenic | 35.0% | |
| TTTAAATAGCTAAACGGCTG+AGG | + | chr6_4:2389696-2389715 | Msa0970730:intron | 35.0% | |
| TTAAATAGCTAAACGGCTGA+GGG | + | chr6_4:2389697-2389716 | Msa0970730:intron | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr6_4:2389729-2389748 | None:intergenic | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr6_4:2389728-2389747 | Msa0970730:intron | 35.0% | |
| TCTCAGAAGTTCTTATCCAT+AGG | - | chr6_4:2389949-2389968 | None:intergenic | 35.0% | |
| !!! | AAGGATTTTTAGCATAGTCC+AGG | + | chr6_4:2390225-2390244 | Msa0970730:intron | 35.0% |
| AGCATAACAAAAAAAGGTCC+TGG | - | chr6_4:2390246-2390265 | None:intergenic | 35.0% | |
| CTGAAAAACAAACGAGAAAG+TGG | - | chr6_4:2390337-2390356 | None:intergenic | 35.0% | |
| !! | AGAACTAGTGCTGATCAAAA+TGG | + | chr6_4:2388879-2388898 | Msa0970730:CDS | 35.0% |
| !! | GAACTAGTGCTGATCAAAAT+GGG | + | chr6_4:2388880-2388899 | Msa0970730:CDS | 35.0% |
| ! | TGAACTTCAGATTTTACAGC+AGG | - | chr6_4:2388978-2388997 | None:intergenic | 35.0% |
| TTATCGTTAGGGTTGTAAGT+TGG | - | chr6_4:2389017-2389036 | None:intergenic | 35.0% | |
| ACTTACAACCCTAACGATAA+TGG | + | chr6_4:2389017-2389036 | Msa0970730:CDS | 35.0% | |
| GACATATGACCATTATCGTT+AGG | - | chr6_4:2389029-2389048 | None:intergenic | 35.0% | |
| TGCTATTCCAATATCTACTG+TGG | + | chr6_4:2389124-2389143 | Msa0970730:CDS | 35.0% | |
| TAGAAGAATGTAGAGAAGCT+CGG | - | chr6_4:2389196-2389215 | None:intergenic | 35.0% | |
| !! | CTTTAATTTGTGGTGGTGAT+TGG | + | chr6_4:2389225-2389244 | Msa0970730:CDS | 35.0% |
| GGGAATAATGTGATTTCTGT+CGG | - | chr6_4:2389383-2389402 | None:intergenic | 35.0% | |
| ACGTACCTACTTAACATCAA+GGG | - | chr6_4:2389403-2389422 | None:intergenic | 35.0% | |
| AACGTACCTACTTAACATCA+AGG | - | chr6_4:2389404-2389423 | None:intergenic | 35.0% | |
| ! | CGGTTAATCATTCTGAAGAT+TGG | - | chr6_4:2389661-2389680 | None:intergenic | 35.0% |
| CAGAATGATTAACCGTCTAA+TGG | + | chr6_4:2389666-2389685 | Msa0970730:intron | 35.0% | |
| TTAAACGTCATCCCATTAGA+CGG | - | chr6_4:2389681-2389700 | None:intergenic | 35.0% | |
| TTTAAATAGCTAAACGGCTG+AGG | + | chr6_4:2389696-2389715 | Msa0970730:intron | 35.0% | |
| TTAAATAGCTAAACGGCTGA+GGG | + | chr6_4:2389697-2389716 | Msa0970730:intron | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr6_4:2389729-2389748 | None:intergenic | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr6_4:2389728-2389747 | Msa0970730:intron | 35.0% | |
| TCTCAGAAGTTCTTATCCAT+AGG | - | chr6_4:2389949-2389968 | None:intergenic | 35.0% | |
| !!! | AAGGATTTTTAGCATAGTCC+AGG | + | chr6_4:2390225-2390244 | Msa0970730:intron | 35.0% |
| AGCATAACAAAAAAAGGTCC+TGG | - | chr6_4:2390246-2390265 | None:intergenic | 35.0% | |
| CTGAAAAACAAACGAGAAAG+TGG | - | chr6_4:2390337-2390356 | None:intergenic | 35.0% | |
| GAAGCATATCAGCATACTCT+AGG | - | chr6_4:2388833-2388852 | None:intergenic | 40.0% | |
| AGAGTATGCTGATATGCTTC+AGG | + | chr6_4:2388833-2388852 | Msa0970730:CDS | 40.0% | |
| !! | TGATCAAAATGGGCTGACAT+TGG | + | chr6_4:2388890-2388909 | Msa0970730:CDS | 40.0% |
| ! | TCATATGTCCTTTTGTGCCT+TGG | + | chr6_4:2389040-2389059 | Msa0970730:CDS | 40.0% |
| ATTCAACTTCCACCATTCCA+AGG | - | chr6_4:2389060-2389079 | None:intergenic | 40.0% | |
| ! | GAATGGTGGAAGTTGAATAG+CGG | + | chr6_4:2389062-2389081 | Msa0970730:intron | 40.0% |
| ! | TCTGAAGCCACAGTAGATAT+TGG | - | chr6_4:2389134-2389153 | None:intergenic | 40.0% |
| ! | ATTGGCTTCGAGTATTGCAT+GGG | + | chr6_4:2389243-2389262 | Msa0970730:CDS | 40.0% |
| TGAGAAAACCTAGAGCTAGA+CGG | - | chr6_4:2389638-2389657 | None:intergenic | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr6_4:2389759-2389778 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr6_4:2389760-2389779 | None:intergenic | 40.0% | |
| TGCTCATTGTTCTTGACCTA+TGG | + | chr6_4:2389930-2389949 | Msa0970730:intron | 40.0% | |
| ! | CTGTGATGCATAAGCTTTTG+TGG | + | chr6_4:2390059-2390078 | Msa0970730:intron | 40.0% |
| GACATTTACGGGCATGTATA+AGG | + | chr6_4:2390206-2390225 | Msa0970730:intron | 40.0% | |
| GAAGCATATCAGCATACTCT+AGG | - | chr6_4:2388833-2388852 | None:intergenic | 40.0% | |
| AGAGTATGCTGATATGCTTC+AGG | + | chr6_4:2388833-2388852 | Msa0970730:CDS | 40.0% | |
| !! | TGATCAAAATGGGCTGACAT+TGG | + | chr6_4:2388890-2388909 | Msa0970730:CDS | 40.0% |
| ! | TCATATGTCCTTTTGTGCCT+TGG | + | chr6_4:2389040-2389059 | Msa0970730:CDS | 40.0% |
| ATTCAACTTCCACCATTCCA+AGG | - | chr6_4:2389060-2389079 | None:intergenic | 40.0% | |
| ! | GAATGGTGGAAGTTGAATAG+CGG | + | chr6_4:2389062-2389081 | Msa0970730:intron | 40.0% |
| ! | TCTGAAGCCACAGTAGATAT+TGG | - | chr6_4:2389134-2389153 | None:intergenic | 40.0% |
| ! | ATTGGCTTCGAGTATTGCAT+GGG | + | chr6_4:2389243-2389262 | Msa0970730:CDS | 40.0% |
| TGAGAAAACCTAGAGCTAGA+CGG | - | chr6_4:2389638-2389657 | None:intergenic | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr6_4:2389759-2389778 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr6_4:2389760-2389779 | None:intergenic | 40.0% | |
| TGCTCATTGTTCTTGACCTA+TGG | + | chr6_4:2389930-2389949 | Msa0970730:intron | 40.0% | |
| ! | CTGTGATGCATAAGCTTTTG+TGG | + | chr6_4:2390059-2390078 | Msa0970730:intron | 40.0% |
| GACATTTACGGGCATGTATA+AGG | + | chr6_4:2390206-2390225 | Msa0970730:intron | 40.0% | |
| ! | CTTCAGGAGCATAGAGAAGA+AGG | + | chr6_4:2388849-2388868 | Msa0970730:CDS | 45.0% |
| ! | TGTCCTTTTGTGCCTTGGAA+TGG | + | chr6_4:2389045-2389064 | Msa0970730:CDS | 45.0% |
| ! | TCAGAGTCAACTTTTAGCGC+CGG | + | chr6_4:2389149-2389168 | Msa0970730:CDS | 45.0% |
| !! | GATTGGCTTCGAGTATTGCA+TGG | + | chr6_4:2389242-2389261 | Msa0970730:CDS | 45.0% |
| ATAGTTGTCGGCGTTGTCTA+CGG | - | chr6_4:2389593-2389612 | None:intergenic | 45.0% | |
| GTTACCCCTCTCATAGTTGT+CGG | - | chr6_4:2389605-2389624 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr6_4:2389743-2389762 | Msa0970730:intron | 45.0% | |
| GTTGAAGGCTGTAGCAAATG+TGG | + | chr6_4:2390424-2390443 | Msa0970730:CDS | 45.0% | |
| ! | CTTCAGGAGCATAGAGAAGA+AGG | + | chr6_4:2388849-2388868 | Msa0970730:CDS | 45.0% |
| ! | TGTCCTTTTGTGCCTTGGAA+TGG | + | chr6_4:2389045-2389064 | Msa0970730:CDS | 45.0% |
| ! | TCAGAGTCAACTTTTAGCGC+CGG | + | chr6_4:2389149-2389168 | Msa0970730:CDS | 45.0% |
| !! | GATTGGCTTCGAGTATTGCA+TGG | + | chr6_4:2389242-2389261 | Msa0970730:CDS | 45.0% |
| ATAGTTGTCGGCGTTGTCTA+CGG | - | chr6_4:2389593-2389612 | None:intergenic | 45.0% | |
| GTTACCCCTCTCATAGTTGT+CGG | - | chr6_4:2389605-2389624 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr6_4:2389743-2389762 | Msa0970730:intron | 45.0% | |
| GTTGAAGGCTGTAGCAAATG+TGG | + | chr6_4:2390424-2390443 | Msa0970730:CDS | 45.0% | |
| !!! | TATCAATATTTTTTATTAAT+AGG | + | chr6_4:2389346-2389365 | Msa0970730:intron | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr6_4:2389882-2389901 | None:intergenic | 5.0% |
| !!! | TATCAATATTTTTTATTAAT+AGG | + | chr6_4:2389346-2389365 | Msa0970730:intron | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr6_4:2389882-2389901 | None:intergenic | 5.0% |
| TTGGAGCCAACAAGAGACAC+AGG | + | chr6_4:2388909-2388928 | Msa0970730:CDS | 50.0% | |
| TGGAGCCAACAAGAGACACA+GGG | + | chr6_4:2388910-2388929 | Msa0970730:CDS | 50.0% | |
| CCACCATTCCAAGGCACAAA+AGG | - | chr6_4:2389051-2389070 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCCTTGGAATGG+TGG | + | chr6_4:2389048-2389067 | Msa0970730:CDS | 50.0% |
| ! | CAGAGTCAACTTTTAGCGCC+GGG | + | chr6_4:2389150-2389169 | Msa0970730:CDS | 50.0% |
| ! | AGAGTCAACTTTTAGCGCCG+GGG | + | chr6_4:2389151-2389170 | Msa0970730:CDS | 50.0% |
| TGAGTCAATAACTCTCCCCC+CGG | - | chr6_4:2389171-2389190 | None:intergenic | 50.0% | |
| ACAACGCCGACAACTATGAG+AGG | + | chr6_4:2389596-2389615 | Msa0970730:intron | 50.0% | |
| CAACGCCGACAACTATGAGA+GGG | + | chr6_4:2389597-2389616 | Msa0970730:intron | 50.0% | |
| AACGCCGACAACTATGAGAG+GGG | + | chr6_4:2389598-2389617 | Msa0970730:intron | 50.0% | |
| CCTAGAGCTAGACGGAATGA+GGG | - | chr6_4:2389630-2389649 | None:intergenic | 50.0% | |
| ACCTAGAGCTAGACGGAATG+AGG | - | chr6_4:2389631-2389650 | None:intergenic | 50.0% | |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr6_4:2389755-2389774 | None:intergenic | 50.0% |
| GTCTTGAAGGGGAGAGCAAT+TGG | + | chr6_4:2390461-2390480 | Msa0970730:CDS | 50.0% | |
| AGGGGAGAGCAATTGGAGTT+TGG | + | chr6_4:2390468-2390487 | Msa0970730:CDS | 50.0% | |
| TTGGAGCCAACAAGAGACAC+AGG | + | chr6_4:2388909-2388928 | Msa0970730:CDS | 50.0% | |
| TGGAGCCAACAAGAGACACA+GGG | + | chr6_4:2388910-2388929 | Msa0970730:CDS | 50.0% | |
| CCACCATTCCAAGGCACAAA+AGG | - | chr6_4:2389051-2389070 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCCTTGGAATGG+TGG | + | chr6_4:2389048-2389067 | Msa0970730:CDS | 50.0% |
| ! | CAGAGTCAACTTTTAGCGCC+GGG | + | chr6_4:2389150-2389169 | Msa0970730:CDS | 50.0% |
| ! | AGAGTCAACTTTTAGCGCCG+GGG | + | chr6_4:2389151-2389170 | Msa0970730:CDS | 50.0% |
| TGAGTCAATAACTCTCCCCC+CGG | - | chr6_4:2389171-2389190 | None:intergenic | 50.0% | |
| ACAACGCCGACAACTATGAG+AGG | + | chr6_4:2389596-2389615 | Msa0970730:intron | 50.0% | |
| CAACGCCGACAACTATGAGA+GGG | + | chr6_4:2389597-2389616 | Msa0970730:intron | 50.0% | |
| AACGCCGACAACTATGAGAG+GGG | + | chr6_4:2389598-2389617 | Msa0970730:intron | 50.0% | |
| CCTAGAGCTAGACGGAATGA+GGG | - | chr6_4:2389630-2389649 | None:intergenic | 50.0% | |
| ACCTAGAGCTAGACGGAATG+AGG | - | chr6_4:2389631-2389650 | None:intergenic | 50.0% | |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr6_4:2389755-2389774 | None:intergenic | 50.0% |
| GTCTTGAAGGGGAGAGCAAT+TGG | + | chr6_4:2390461-2390480 | Msa0970730:CDS | 50.0% | |
| AGGGGAGAGCAATTGGAGTT+TGG | + | chr6_4:2390468-2390487 | Msa0970730:CDS | 50.0% | |
| AGCCAACAAGAGACACAGGG+TGG | + | chr6_4:2388913-2388932 | Msa0970730:CDS | 55.0% | |
| GACCACCCTGTGTCTCTTGT+TGG | - | chr6_4:2388918-2388937 | None:intergenic | 55.0% | |
| !! | GAGTCAACTTTTAGCGCCGG+GGG | + | chr6_4:2389152-2389171 | Msa0970730:CDS | 55.0% |
| !! | AGTCAACTTTTAGCGCCGGG+GGG | + | chr6_4:2389153-2389172 | Msa0970730:CDS | 55.0% |
| !! | CCCTCATTCCGTCTAGCTCT+AGG | + | chr6_4:2389627-2389646 | Msa0970730:intron | 55.0% |
| TGAGGGCAGTGACCTCTCAT+TGG | + | chr6_4:2389714-2389733 | Msa0970730:intron | 55.0% | |
| GAGGGCAGTGACCTCTCATT+GGG | + | chr6_4:2389715-2389734 | Msa0970730:intron | 55.0% | |
| AGCCAACAAGAGACACAGGG+TGG | + | chr6_4:2388913-2388932 | Msa0970730:CDS | 55.0% | |
| GACCACCCTGTGTCTCTTGT+TGG | - | chr6_4:2388918-2388937 | None:intergenic | 55.0% | |
| !! | GAGTCAACTTTTAGCGCCGG+GGG | + | chr6_4:2389152-2389171 | Msa0970730:CDS | 55.0% |
| !! | AGTCAACTTTTAGCGCCGGG+GGG | + | chr6_4:2389153-2389172 | Msa0970730:CDS | 55.0% |
| !! | CCCTCATTCCGTCTAGCTCT+AGG | + | chr6_4:2389627-2389646 | Msa0970730:intron | 55.0% |
| TGAGGGCAGTGACCTCTCAT+TGG | + | chr6_4:2389714-2389733 | Msa0970730:intron | 55.0% | |
| GAGGGCAGTGACCTCTCATT+GGG | + | chr6_4:2389715-2389734 | Msa0970730:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 2388825 | 2390496 | 2388825 | ID=Msa0970730;Name=Msa0970730 |
| chr6_4 | mRNA | 2388825 | 2390496 | 2388825 | ID=Msa0970730-mRNA-1;Parent=Msa0970730;Name=Msa0970730-mRNA-1;_AED=0.26;_eAED=0.37;_QI=0|0.33|0|1|0.33|0|4|0|174 |
| chr6_4 | exon | 2388825 | 2389072 | 2388825 | ID=Msa0970730-mRNA-1:exon:1157;Parent=Msa0970730-mRNA-1 |
| chr6_4 | exon | 2389094 | 2389283 | 2389094 | ID=Msa0970730-mRNA-1:exon:1158;Parent=Msa0970730-mRNA-1 |
| chr6_4 | exon | 2389368 | 2389376 | 2389368 | ID=Msa0970730-mRNA-1:exon:1159;Parent=Msa0970730-mRNA-1 |
| chr6_4 | exon | 2390419 | 2390496 | 2390419 | ID=Msa0970730-mRNA-1:exon:1160;Parent=Msa0970730-mRNA-1 |
| chr6_4 | CDS | 2388825 | 2389072 | 2388825 | ID=Msa0970730-mRNA-1:cds;Parent=Msa0970730-mRNA-1 |
| chr6_4 | CDS | 2389094 | 2389283 | 2389094 | ID=Msa0970730-mRNA-1:cds;Parent=Msa0970730-mRNA-1 |
| chr6_4 | CDS | 2389368 | 2389376 | 2389368 | ID=Msa0970730-mRNA-1:cds;Parent=Msa0970730-mRNA-1 |
| chr6_4 | CDS | 2390419 | 2390496 | 2390419 | ID=Msa0970730-mRNA-1:cds;Parent=Msa0970730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
