AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325070 MtrunA17_Chr7g0263231 31.994 672 417 16 46 690 411 1069 8.81e-109 355
Msa0325070 MtrunA17_Chr2g0308821 31.325 664 416 13 59 690 4 659 4.24e-108 343
Msa0325070 MtrunA17_Chr7g0263261 32.201 677 409 18 46 690 352 1010 1.17e-104 342
Msa0325070 MtrunA17_Chr8g0359341 30.250 681 425 17 58 705 59 722 9.51e-102 328
Msa0325070 MtrunA17_Chr8g0354631 31.647 692 421 20 33 690 30 703 1.01e-100 326
Msa0325070 MtrunA17_Chr5g0402891 33.448 580 352 13 134 690 11 579 4.00e-97 313
Msa0325070 MtrunA17_Chr2g0333261 30.263 684 427 18 39 689 12 678 2.88e-96 312
Msa0325070 MtrunA17_Chr8g0383211 28.656 677 401 12 50 689 4 635 1.41e-94 307
Msa0325070 MtrunA17_Chr4g0003151 28.000 675 443 14 55 700 13 673 5.25e-92 300
Msa0325070 MtrunA17_Chr4g0052681 32.472 542 344 11 160 689 27 558 8.05e-86 282
Msa0325070 MtrunA17_Chr8g0383041 32.515 489 310 10 210 689 78 555 6.79e-82 271
Msa0325070 MtrunA17_Chr8g0383081 31.073 531 348 10 166 689 31 550 2.30e-80 267
Msa0325070 MtrunA17_Chr8g0383071 39.502 281 162 4 225 501 34 310 6.51e-64 215
Msa0325070 MtrunA17_Chr4g0052601 32.569 436 260 14 45 468 11 424 3.72e-62 214
Msa0325070 MtrunA17_Chr4g0062411 25.268 653 436 16 65 707 55 665 3.26e-47 178
Msa0325070 MtrunA17_Chr8g0383051 32.740 281 179 5 166 441 46 321 1.11e-40 152
Msa0325070 MtrunA17_Chr4g0053391 34.211 266 149 7 437 695 1 247 2.07e-38 144
Msa0325070 MtrunA17_Chr5g0408131 35.961 203 123 3 487 689 23 218 1.23e-32 126
Msa0325070 MtrunA17_Chr4g0052611 36.449 214 113 5 484 691 9 205 6.79e-32 124
Msa0325070 MtrunA17_Chr1g0192041 33.735 166 105 2 390 553 62 224 9.43e-30 118
Msa0325070 MtrunA17_Chr8g0383181 28.082 292 168 8 67 343 22 286 6.70e-27 112
Msa0325070 MtrunA17_Chr8g0383061 30.435 207 130 6 487 689 1 197 4.68e-19 87.0
Msa0325070 MtrunA17_Chr8g0390371 46.575 73 36 1 623 695 11 80 1.77e-14 69.3
Msa0325070 MtrunA17_Chr3g0108001 45.205 73 37 1 623 695 7 76 3.19e-14 69.3
Msa0325070 MtrunA17_Chr8g0383171 27.374 179 117 5 514 689 63 231 1.69e-13 71.6
Msa0325070 MtrunA17_Chr1g0162951 46.667 60 29 1 642 701 1 57 2.93e-12 62.4
Msa0325070 MtrunA17_Chr5g0440991 29.032 124 79 3 401 515 1 124 3.02e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325070 AT3G42170.1 29.653 634 413 14 67 689 63 674 1.39e-97 316
Msa0325070 AT3G42170.2 29.653 634 413 14 67 689 41 652 1.48e-97 315
Msa0325070 AT1G18560.1 24.474 666 448 16 57 707 40 665 6.72e-41 160

Find 123 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAATTATATAAAGTTAA+AGG 0.209633 2_4:-31161973 None:intergenic
TCTGTTACAAATATAATTTC+TGG 0.238190 2_4:+31160346 Msa0325070:CDS
TTTGCTTGACCACGGATTTA+TGG 0.240127 2_4:+31159693 Msa0325070:CDS
GAAATAAAACTTCTCCAGTT+TGG 0.240607 2_4:+31159213 Msa0325070:CDS
TCTTCCTCAACAATACTAAA+TGG 0.270419 2_4:-31159533 None:intergenic
GGACAAGCAAGTTTAGTATA+TGG 0.273052 2_4:-31160015 None:intergenic
TCATCTCCGGGGTAAATTAA+AGG 0.288608 2_4:-31160586 None:intergenic
CTTCAAAGAAGTGAAGTTAA+AGG 0.299486 2_4:+31159241 Msa0325070:CDS
TATGTCCCTTGCTTCTGTTT+TGG 0.319533 2_4:+31160525 Msa0325070:CDS
ATGATTGATGAGAAGCTTTC+CGG 0.328359 2_4:+31159425 Msa0325070:CDS
GACCACCCTGTGTCTCTTGT+TGG 0.332360 2_4:-31160742 None:intergenic
AGAACTAGTGCTGATCAAAA+TGG 0.335518 2_4:+31160706 Msa0325070:CDS
AGGGGAGAGCAATTGGAGTT+TGG 0.335928 2_4:+31161853 Msa0325070:three_prime_UTR
CCATTTCATTGATGCTGATT+GGG 0.352176 2_4:+31159757 Msa0325070:CDS
AAATAAAACTTCTCCAGTTT+GGG 0.353519 2_4:+31159214 Msa0325070:CDS
GCCATTTCATTGATGCTGAT+TGG 0.359357 2_4:+31159756 Msa0325070:CDS
TCTGAAGCCACAGTAGATAT+TGG 0.367386 2_4:-31160958 None:intergenic
AGCTAAAAGTTCTACTTTCA+AGG 0.369693 2_4:+31159942 Msa0325070:CDS
CTCTTCCAGATGAAGATGAT+TGG 0.371453 2_4:+31160281 Msa0325070:CDS
AAGCCCTCTTCTCCATCATT+TGG 0.374987 2_4:-31159053 None:intergenic
AGAGTATGCTGATATGCTTC+AGG 0.386838 2_4:+31160660 Msa0325070:CDS
CTTTAATTTGTGGTGGTGAT+TGG 0.392374 2_4:+31161052 Msa0325070:CDS
ATAGAATACATGGTGCTAAC+TGG 0.399590 2_4:+31159734 Msa0325070:CDS
CTTTAAATGTCTCAAAGAAT+GGG 0.401248 2_4:+31159853 Msa0325070:CDS
TTGCTTGTCCAAGATGGTAT+TGG 0.401789 2_4:+31160028 Msa0325070:CDS
TCTTTAAATGTCTCAAAGAA+TGG 0.404654 2_4:+31159852 Msa0325070:CDS
GTCTTGAAGGGGAGAGCAAT+TGG 0.409399 2_4:+31161846 Msa0325070:three_prime_UTR
ATGAGTAAAGATTAAGTTGA+AGG 0.409636 2_4:+31161794 Msa0325070:three_prime_UTR
TTATTCTTCCAATACCATCT+TGG 0.410788 2_4:-31160036 None:intergenic
CCCAATCAGCATCAATGAAA+TGG 0.414858 2_4:-31159757 None:intergenic
TCTTTGAAGTGATCCCAAAC+TGG 0.416027 2_4:-31159227 None:intergenic
TAGTACGTCAATTGAATCAT+TGG 0.416517 2_4:+31159019 Msa0325070:CDS
CCCTTGAATGTCTCTTCAAA+TGG 0.418648 2_4:-31159334 None:intergenic
AGCAAGATTACGAACATTCT+CGG 0.424413 2_4:+31160111 Msa0325070:CDS
ACGAGAAGCCACTGCACATT+GGG 0.435944 2_4:+31159493 Msa0325070:CDS
TTTAGTATTGTTGAGGAAGA+AGG 0.438752 2_4:+31159536 Msa0325070:CDS
GACAAGCAAGTTTAGTATAT+GGG 0.441530 2_4:-31160014 None:intergenic
TTCTTGATTGCCCTACTCGC+TGG 0.443318 2_4:+31160173 Msa0325070:CDS
CCACCATTCCAAGGCACAAA+AGG 0.447229 2_4:-31160875 None:intergenic
TCATGATCATATTTAGCACT+TGG 0.449353 2_4:-31159464 None:intergenic
GACATATGACCATTATCGTT+AGG 0.449440 2_4:-31160853 None:intergenic
ACTTACAGCCCTAACGATAA+TGG 0.449866 2_4:+31160844 Msa0325070:CDS
TCTTCCAGATGAAGATGATT+GGG 0.455559 2_4:+31160282 Msa0325070:CDS
GGACCCTAGGATCAAAATGA+TGG 0.456567 2_4:+31160546 Msa0325070:CDS
ACATTCAAGGGAAGTATGTC+AGG 0.460996 2_4:+31159346 Msa0325070:CDS
ATATAGAGTATTATCTCATA+TGG 0.462323 2_4:+31160915 Msa0325070:CDS
CAACGATGCTGTTATTCAAA+AGG 0.462531 2_4:+31159184 Msa0325070:CDS
GGTGTTGCTTCATTTGTTAG+TGG 0.469430 2_4:-31159125 None:intergenic
TCTGGAAGAGTTGTATAACT+TGG 0.473625 2_4:-31160268 None:intergenic
GCAAGATATAAATTAGAAGT+TGG 0.480417 2_4:-31160379 None:intergenic
GCAACACCGGAAAATGAAGT+TGG 0.483664 2_4:+31159140 Msa0325070:CDS
ACATGGAGTTCCAGCGAGTA+GGG 0.488258 2_4:-31160183 None:intergenic
TTCGCATCTAAGTCAATGAT+AGG 0.492678 2_4:-31159089 None:intergenic
GAACTAGTGCTGATCAAAAT+GGG 0.493299 2_4:+31160707 Msa0325070:CDS
TTATTCCCTTGATGTTAAGT+AGG 0.495461 2_4:+31161222 Msa0325070:exon
GCCATTTGAAGAGACATTCA+AGG 0.497363 2_4:+31159333 Msa0325070:CDS
AGACATGGCAAATGCGATGA+AGG 0.505997 2_4:+31160465 Msa0325070:CDS
ACCGTTGAAACTTTAATTTG+TGG 0.507663 2_4:+31161042 Msa0325070:CDS
CTTCAGGAGCATAGAGAAGA+AGG 0.509895 2_4:+31160676 Msa0325070:CDS
AACGTACCTACTTAACATCA+AGG 0.512693 2_4:-31161228 None:intergenic
ACATATGACCATTATCGTTA+GGG 0.512841 2_4:-31160852 None:intergenic
TGGATTCATAAGTAGTGGTC+CGG 0.516119 2_4:-31159444 None:intergenic
AGTACGTCAATTGAATCATT+GGG 0.521505 2_4:+31159020 Msa0325070:CDS
TGCTATTCCAATATCTACTG+TGG 0.523521 2_4:+31160951 Msa0325070:CDS
TTCTAATTTATATCTTGCTG+AGG 0.525402 2_4:+31160384 Msa0325070:CDS
CAACACCGGAAAATGAAGTT+GGG 0.527758 2_4:+31159141 Msa0325070:CDS
GGGAATAATGTGATTTCTGT+CGG 0.531032 2_4:-31161207 None:intergenic
AAATAAAATATTTAGTGTGT+CGG 0.531663 2_4:+31159883 Msa0325070:CDS
GTCTATTATATGCATGCTTG+TGG 0.533217 2_4:+31161995 Msa0325070:three_prime_UTR
AACTGACAACATTTGATACA+TGG 0.534684 2_4:-31160200 None:intergenic
TAAAATATTTAGTGTGTCGG+TGG 0.536956 2_4:+31159886 Msa0325070:CDS
ACCACAAATTAAAGTTTCAA+CGG 0.539404 2_4:-31161043 None:intergenic
ATAGTTCAACAACTAAAGCT+TGG 0.540231 2_4:+31160136 Msa0325070:CDS
GCACTTGGATTCATAAGTAG+TGG 0.541124 2_4:-31159449 None:intergenic
AAAGATTAAGTTGAAGGCTG+TGG 0.541132 2_4:+31161800 Msa0325070:three_prime_UTR
GAAGCATATCAGCATACTCT+AGG 0.542630 2_4:-31160657 None:intergenic
GGAGGTTCATCACCAAATGA+TGG 0.548483 2_4:+31159041 Msa0325070:CDS
ATTGGCTTCGAGTATTGCAT+GGG 0.548627 2_4:+31161070 Msa0325070:CDS
GATTGGCTTCGAGTATTGCA+TGG 0.550233 2_4:+31161069 Msa0325070:CDS
TGCTTTCCTTTAATTTACCC+CGG 0.550404 2_4:+31160580 Msa0325070:CDS
TCGATCTTGAAAACGTGGAA+AGG 0.551102 2_4:-31160242 None:intergenic
TCAACACCACGTCGAGGAGG+AGG 0.558551 2_4:-31159815 None:intergenic
CTAAACTTGCTTGTCCAAGA+TGG 0.561967 2_4:+31160022 Msa0325070:CDS
ATTCAACTTCCACCATTCCA+AGG 0.562144 2_4:-31160884 None:intergenic
AAAGAAGTGAAGTTAAAGGA+TGG 0.565368 2_4:+31159245 Msa0325070:CDS
AACGAGAAGCCACTGCACAT+TGG 0.572418 2_4:+31159492 Msa0325070:CDS
TCACCAAATGATGGAGAAGA+GGG 0.573695 2_4:+31159050 Msa0325070:CDS
AAATAAGATTTGCTTGACCA+CGG 0.577624 2_4:+31159685 Msa0325070:CDS
TTATCGTTAGGGCTGTAAGT+TGG 0.583645 2_4:-31160841 None:intergenic
AAATCAAAAGATAGAATACA+TGG 0.583652 2_4:+31159724 Msa0325070:CDS
GTTCAACAACTAAAGCTTGG+TGG 0.587329 2_4:+31160139 Msa0325070:CDS
ATCACCAAATGATGGAGAAG+AGG 0.588933 2_4:+31159049 Msa0325070:CDS
TTTCATATGAGAAAATTAGT+CGG 0.590543 2_4:+31159588 Msa0325070:CDS
GACCCTAGGATCAAAATGAT+GGG 0.591637 2_4:+31160547 Msa0325070:CDS
ACATCCATTTAGTATTGTTG+AGG 0.596544 2_4:+31159529 Msa0325070:CDS
AGAAGTTAAAGTCAACTTTG+AGG 0.600517 2_4:+31159657 Msa0325070:CDS
TTGTGACTTCCATAAATCCG+TGG 0.602894 2_4:-31159702 None:intergenic
AGGGTCCAAAACAGAAGCAA+GGG 0.604905 2_4:-31160530 None:intergenic
CCATTTGAAGAGACATTCAA+GGG 0.606049 2_4:+31159334 Msa0325070:CDS
AAAAGTTTGCAAGTTGCTAG+AGG 0.609654 2_4:+31160315 Msa0325070:CDS
TAGAAGAATGTAGAGAAGCT+CGG 0.609825 2_4:-31161020 None:intergenic
GTTGAAGGCTGTGGCAAATG+TGG 0.614214 2_4:+31161809 Msa0325070:three_prime_UTR
TTGGAGCCAACAAGAGACAC+AGG 0.615353 2_4:+31160736 Msa0325070:CDS
TAGGGTCCAAAACAGAAGCA+AGG 0.615539 2_4:-31160531 None:intergenic
ACGTACCTACTTAACATCAA+GGG 0.621396 2_4:-31161227 None:intergenic
CATGTTCCTCCTCCTCGACG+TGG 0.623565 2_4:+31159809 Msa0325070:CDS
TTTAAATGTCTCAAAGAATG+GGG 0.629030 2_4:+31159854 Msa0325070:CDS
TGATCAAAATGGGCTGACAT+TGG 0.630883 2_4:+31160717 Msa0325070:CDS
CATCATAACCCAATGTGCAG+TGG 0.633413 2_4:-31159501 None:intergenic
TTAGTATATGGGCACAACAA+CGG 0.638288 2_4:-31160003 None:intergenic
GTTGAAACTTTAATTTGTGG+TGG 0.639553 2_4:+31161045 Msa0325070:CDS
GGTGTTTCAAATCAAGCAAG+TGG 0.641921 2_4:+31160405 Msa0325070:CDS
ACTAACAAATGAAGCAACAC+CGG 0.649014 2_4:+31159127 Msa0325070:CDS
ACGTCAATTGAATCATTGGG+AGG 0.653810 2_4:+31159023 Msa0325070:CDS
TACATGGAGTTCCAGCGAGT+AGG 0.658314 2_4:-31160184 None:intergenic
TTGCTGTCTATGAATCTGAA+AGG 0.661595 2_4:+31159633 Msa0325070:CDS
GGTTCTCGATCTTGAAAACG+TGG 0.664593 2_4:-31160247 None:intergenic
GTCTAACTTCATGAAAGACA+TGG 0.678953 2_4:+31160450 Msa0325070:CDS
ATATCAACACCACGTCGAGG+AGG 0.692782 2_4:-31159818 None:intergenic
GCAATATCAACACCACGTCG+AGG 0.705440 2_4:-31159821 None:intergenic
GAATGGTGGAAGTTGAATAG+CGG 0.711081 2_4:+31160889 Msa0325070:CDS
TGGAGCCAACAAGAGACACA+GGG 0.732152 2_4:+31160737 Msa0325070:CDS
AGCCAACAAGAGACACAGGG+TGG 0.786904 2_4:+31160740 Msa0325070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATTATATAAAGTTAA+AGG - chr2_4:31161976-31161995 None:intergenic 10.0%
!! AAATAAAATATTTAGTGTGT+CGG + chr2_4:31159883-31159902 Msa0325070:CDS 15.0%
!! AAGAGAAAATATATTACTTT+AGG - chr2_4:31161108-31161127 None:intergenic 15.0%
!!! CAATATTTTTTATTAATAGG+TGG + chr2_4:31161176-31161195 Msa0325070:intron 15.0%
!! ATCAATAAACAACTTAATAA+AGG - chr2_4:31161674-31161693 None:intergenic 15.0%
!! TTTCATATGAGAAAATTAGT+CGG + chr2_4:31159588-31159607 Msa0325070:CDS 20.0%
!! AAATCAAAAGATAGAATACA+TGG + chr2_4:31159724-31159743 Msa0325070:CDS 20.0%
!! TCTGTTACAAATATAATTTC+TGG + chr2_4:31160346-31160365 Msa0325070:CDS 20.0%
!! AGCTAGAAAAAATATAGAAA+AGG + chr2_4:31160609-31160628 Msa0325070:CDS 20.0%
!!! ATATAGAGTATTATCTCATA+TGG + chr2_4:31160915-31160934 Msa0325070:CDS 20.0%
!! ATAAGAAAAAAAGATGCATT+GGG + chr2_4:31161353-31161372 Msa0325070:intron 20.0%
!!! TAAAGATAGCATTTTTGTAT+TGG + chr2_4:31161478-31161497 Msa0325070:intron 20.0%
!!! AAAGATAGCATTTTTGTATT+GGG + chr2_4:31161479-31161498 Msa0325070:intron 20.0%
! AAATAAAACTTCTCCAGTTT+GGG + chr2_4:31159214-31159233 Msa0325070:CDS 25.0%
! TAAAGGATGGAACAAAAAAA+TGG + chr2_4:31159258-31159277 Msa0325070:CDS 25.0%
!!! AATTATTTTGTTGTTGCAAG+TGG + chr2_4:31159302-31159321 Msa0325070:CDS 25.0%
! TCTTTAAATGTCTCAAAGAA+TGG + chr2_4:31159852-31159871 Msa0325070:CDS 25.0%
! CTTTAAATGTCTCAAAGAAT+GGG + chr2_4:31159853-31159872 Msa0325070:CDS 25.0%
! TTTAAATGTCTCAAAGAATG+GGG + chr2_4:31159854-31159873 Msa0325070:CDS 25.0%
! GCAAGATATAAATTAGAAGT+TGG - chr2_4:31160382-31160401 None:intergenic 25.0%
! TTCTAATTTATATCTTGCTG+AGG + chr2_4:31160384-31160403 Msa0325070:CDS 25.0%
! AGGAAAAATTTGACAAGTAT+TGG + chr2_4:31160485-31160504 Msa0325070:CDS 25.0%
! ACCACAAATTAAAGTTTCAA+CGG - chr2_4:31161046-31161065 None:intergenic 25.0%
! GATAAGAAAAAAAGATGCAT+TGG + chr2_4:31161352-31161371 Msa0325070:intron 25.0%
! CAACTATGATATGACATTTA+CGG + chr2_4:31161579-31161598 Msa0325070:intron 25.0%
! AACTATGATATGACATTTAC+GGG + chr2_4:31161580-31161599 Msa0325070:intron 25.0%
!! GCTAAAAGCATAACAAAAAA+AGG - chr2_4:31161637-31161656 None:intergenic 25.0%
!! ATTGATATGTAGCATTTTTC+AGG + chr2_4:31161688-31161707 Msa0325070:intron 25.0%
!!! ATGAGTAAAGATTAAGTTGA+AGG + chr2_4:31161794-31161813 Msa0325070:three_prime_UTR 25.0%
!! TGAATACAATTTTGTCTTGA+AGG + chr2_4:31161833-31161852 Msa0325070:three_prime_UTR 25.0%
!! GAATACAATTTTGTCTTGAA+GGG + chr2_4:31161834-31161853 Msa0325070:three_prime_UTR 25.0%
!! AATACAATTTTGTCTTGAAG+GGG + chr2_4:31161835-31161854 Msa0325070:three_prime_UTR 25.0%
TAGTACGTCAATTGAATCAT+TGG + chr2_4:31159019-31159038 Msa0325070:CDS 30.0%
AGTACGTCAATTGAATCATT+GGG + chr2_4:31159020-31159039 Msa0325070:CDS 30.0%
GAAATAAAACTTCTCCAGTT+TGG + chr2_4:31159213-31159232 Msa0325070:CDS 30.0%
CTTCAAAGAAGTGAAGTTAA+AGG + chr2_4:31159241-31159260 Msa0325070:CDS 30.0%
AAAGAAGTGAAGTTAAAGGA+TGG + chr2_4:31159245-31159264 Msa0325070:CDS 30.0%
TCATGATCATATTTAGCACT+TGG - chr2_4:31159467-31159486 None:intergenic 30.0%
ACATCCATTTAGTATTGTTG+AGG + chr2_4:31159529-31159548 Msa0325070:CDS 30.0%
TCTTCCTCAACAATACTAAA+TGG - chr2_4:31159536-31159555 None:intergenic 30.0%
TTTAGTATTGTTGAGGAAGA+AGG + chr2_4:31159536-31159555 Msa0325070:CDS 30.0%
AGAAGTTAAAGTCAACTTTG+AGG + chr2_4:31159657-31159676 Msa0325070:CDS 30.0%
! AAATAAGATTTGCTTGACCA+CGG + chr2_4:31159685-31159704 Msa0325070:CDS 30.0%
TAAAATATTTAGTGTGTCGG+TGG + chr2_4:31159886-31159905 Msa0325070:CDS 30.0%
AGCTAAAAGTTCTACTTTCA+AGG + chr2_4:31159942-31159961 Msa0325070:CDS 30.0%
! TTCCATCCAACACTAATTTT+TGG - chr2_4:31159970-31159989 None:intergenic 30.0%
GACAAGCAAGTTTAGTATAT+GGG - chr2_4:31160017-31160036 None:intergenic 30.0%
TTATTCTTCCAATACCATCT+TGG - chr2_4:31160039-31160058 None:intergenic 30.0%
ATAGTTCAACAACTAAAGCT+TGG + chr2_4:31160136-31160155 Msa0325070:CDS 30.0%
AACTGACAACATTTGATACA+TGG - chr2_4:31160203-31160222 None:intergenic 30.0%
!!! ATTTTTTCTAGCTTCATCTC+CGG - chr2_4:31160602-31160621 None:intergenic 30.0%
ACATATGACCATTATCGTTA+GGG - chr2_4:31160855-31160874 None:intergenic 30.0%
!! ACCGTTGAAACTTTAATTTG+TGG + chr2_4:31161042-31161061 Msa0325070:CDS 30.0%
!! GTTGAAACTTTAATTTGTGG+TGG + chr2_4:31161045-31161064 Msa0325070:CDS 30.0%
! TTTTTATTAATAGGTGGAGC+AGG + chr2_4:31161182-31161201 Msa0325070:intron 30.0%
TTATTCCCTTGATGTTAAGT+AGG + chr2_4:31161222-31161241 Msa0325070:exon 30.0%
AAATTGACAAGAACCTATTG+TGG + chr2_4:31161262-31161281 Msa0325070:intron 30.0%
AGTGATATCAAATCCACAAT+AGG - chr2_4:31161278-31161297 None:intergenic 30.0%
! AAGCTTTTGTGGATATATGT+TGG + chr2_4:31161455-31161474 Msa0325070:intron 30.0%
! CATGCTATATTTCTAATCAG+TGG - chr2_4:31161511-31161530 None:intergenic 30.0%
ATGTATGTTGAGTAAGCTTA+TGG + chr2_4:31161528-31161547 Msa0325070:intron 30.0%
AAGCTTATGGAATCTTGATA+AGG + chr2_4:31161541-31161560 Msa0325070:intron 30.0%
! CTCAGCTAATTGAATTTTGT+TGG + chr2_4:31161903-31161922 Msa0325070:three_prime_UTR 30.0%
TTCGCATCTAAGTCAATGAT+AGG - chr2_4:31159092-31159111 None:intergenic 35.0%
ACTAACAAATGAAGCAACAC+CGG + chr2_4:31159127-31159146 Msa0325070:CDS 35.0%
! TCATTCCCAACTTCATTTTC+CGG - chr2_4:31159149-31159168 None:intergenic 35.0%
CAACGATGCTGTTATTCAAA+AGG + chr2_4:31159184-31159203 Msa0325070:CDS 35.0%
CCATTTGAAGAGACATTCAA+GGG + chr2_4:31159334-31159353 Msa0325070:CDS 35.0%
!! TCATCAATCATGCTTTTTGC+TGG - chr2_4:31159416-31159435 None:intergenic 35.0%
ATGATTGATGAGAAGCTTTC+CGG + chr2_4:31159425-31159444 Msa0325070:CDS 35.0%
TTGCTGTCTATGAATCTGAA+AGG + chr2_4:31159633-31159652 Msa0325070:CDS 35.0%
! ATAGAATACATGGTGCTAAC+TGG + chr2_4:31159734-31159753 Msa0325070:CDS 35.0%
! CCATTTCATTGATGCTGATT+GGG + chr2_4:31159757-31159776 Msa0325070:CDS 35.0%
! AAGGCACCAAAAATTAGTGT+TGG + chr2_4:31159961-31159980 Msa0325070:CDS 35.0%
! CACCAAAAATTAGTGTTGGA+TGG + chr2_4:31159965-31159984 Msa0325070:CDS 35.0%
TTAGTATATGGGCACAACAA+CGG - chr2_4:31160006-31160025 None:intergenic 35.0%
GGACAAGCAAGTTTAGTATA+TGG - chr2_4:31160018-31160037 None:intergenic 35.0%
AGCAAGATTACGAACATTCT+CGG + chr2_4:31160111-31160130 Msa0325070:CDS 35.0%
TCTGGAAGAGTTGTATAACT+TGG - chr2_4:31160271-31160290 None:intergenic 35.0%
TCTTCCAGATGAAGATGATT+GGG + chr2_4:31160282-31160301 Msa0325070:CDS 35.0%
! TTTTCCCAATCATCTTCATC+TGG - chr2_4:31160289-31160308 None:intergenic 35.0%
AAAAGTTTGCAAGTTGCTAG+AGG + chr2_4:31160315-31160334 Msa0325070:CDS 35.0%
GTCTAACTTCATGAAAGACA+TGG + chr2_4:31160450-31160469 Msa0325070:CDS 35.0%
! TGCTTTCCTTTAATTTACCC+CGG + chr2_4:31160580-31160599 Msa0325070:CDS 35.0%
!!! TTTTTTCTAGCTTCATCTCC+GGG - chr2_4:31160601-31160620 None:intergenic 35.0%
!! AGAACTAGTGCTGATCAAAA+TGG + chr2_4:31160706-31160725 Msa0325070:CDS 35.0%
!! GAACTAGTGCTGATCAAAAT+GGG + chr2_4:31160707-31160726 Msa0325070:CDS 35.0%
! TGAACTTCAGATTTTACAGC+AGG - chr2_4:31160805-31160824 None:intergenic 35.0%
GACATATGACCATTATCGTT+AGG - chr2_4:31160856-31160875 None:intergenic 35.0%
TGCTATTCCAATATCTACTG+TGG + chr2_4:31160951-31160970 Msa0325070:CDS 35.0%
TAGAAGAATGTAGAGAAGCT+CGG - chr2_4:31161023-31161042 None:intergenic 35.0%
!! CTTTAATTTGTGGTGGTGAT+TGG + chr2_4:31161052-31161071 Msa0325070:CDS 35.0%
GGGAATAATGTGATTTCTGT+CGG - chr2_4:31161210-31161229 None:intergenic 35.0%
ACGTACCTACTTAACATCAA+GGG - chr2_4:31161230-31161249 None:intergenic 35.0%
AACGTACCTACTTAACATCA+AGG - chr2_4:31161231-31161250 None:intergenic 35.0%
TCTCAGAAGTTCTTATCCAT+AGG - chr2_4:31161334-31161353 None:intergenic 35.0%
!!! AAGGATTTTTAGCATAGTCC+AGG + chr2_4:31161610-31161629 Msa0325070:intron 35.0%
AGCATAACAAAAAAAGGTCC+TGG - chr2_4:31161631-31161650 None:intergenic 35.0%
CTGAAAAACAAACGAGAAAG+TGG - chr2_4:31161722-31161741 None:intergenic 35.0%
!! AAAGATTAAGTTGAAGGCTG+TGG + chr2_4:31161800-31161819 Msa0325070:three_prime_UTR 35.0%
ACGTCAATTGAATCATTGGG+AGG + chr2_4:31159023-31159042 Msa0325070:CDS 40.0%
! ATCACCAAATGATGGAGAAG+AGG + chr2_4:31159049-31159068 Msa0325070:CDS 40.0%
! TCACCAAATGATGGAGAAGA+GGG + chr2_4:31159050-31159069 Msa0325070:CDS 40.0%
!! GGTGTTGCTTCATTTGTTAG+TGG - chr2_4:31159128-31159147 None:intergenic 40.0%
CAACACCGGAAAATGAAGTT+GGG + chr2_4:31159141-31159160 Msa0325070:CDS 40.0%
!! TCTTTGAAGTGATCCCAAAC+TGG - chr2_4:31159230-31159249 None:intergenic 40.0%
GCCATTTGAAGAGACATTCA+AGG + chr2_4:31159333-31159352 Msa0325070:CDS 40.0%
CCCTTGAATGTCTCTTCAAA+TGG - chr2_4:31159337-31159356 None:intergenic 40.0%
! ACATTCAAGGGAAGTATGTC+AGG + chr2_4:31159346-31159365 Msa0325070:CDS 40.0%
TGGATTCATAAGTAGTGGTC+CGG - chr2_4:31159447-31159466 None:intergenic 40.0%
GCACTTGGATTCATAAGTAG+TGG - chr2_4:31159452-31159471 None:intergenic 40.0%
TTTGCTTGACCACGGATTTA+TGG + chr2_4:31159693-31159712 Msa0325070:CDS 40.0%
TTGTGACTTCCATAAATCCG+TGG - chr2_4:31159705-31159724 None:intergenic 40.0%
GCCATTTCATTGATGCTGAT+TGG + chr2_4:31159756-31159775 Msa0325070:CDS 40.0%
CCCAATCAGCATCAATGAAA+TGG - chr2_4:31159760-31159779 None:intergenic 40.0%
! CTAAACTTGCTTGTCCAAGA+TGG + chr2_4:31160022-31160041 Msa0325070:CDS 40.0%
TTGCTTGTCCAAGATGGTAT+TGG + chr2_4:31160028-31160047 Msa0325070:CDS 40.0%
GTTCAACAACTAAAGCTTGG+TGG + chr2_4:31160139-31160158 Msa0325070:CDS 40.0%
TCGATCTTGAAAACGTGGAA+AGG - chr2_4:31160245-31160264 None:intergenic 40.0%
CTCTTCCAGATGAAGATGAT+TGG + chr2_4:31160281-31160300 Msa0325070:CDS 40.0%
GGTGTTTCAAATCAAGCAAG+TGG + chr2_4:31160405-31160424 Msa0325070:CDS 40.0%
! TATGTCCCTTGCTTCTGTTT+TGG + chr2_4:31160525-31160544 Msa0325070:CDS 40.0%
GACCCTAGGATCAAAATGAT+GGG + chr2_4:31160547-31160566 Msa0325070:CDS 40.0%
!! CTCCCATCATTTTGATCCTA+GGG - chr2_4:31160552-31160571 None:intergenic 40.0%
!! ACTCCCATCATTTTGATCCT+AGG - chr2_4:31160553-31160572 None:intergenic 40.0%
TCATCTCCGGGGTAAATTAA+AGG - chr2_4:31160589-31160608 None:intergenic 40.0%
!!! TTTTTCTAGCTTCATCTCCG+GGG - chr2_4:31160600-31160619 None:intergenic 40.0%
GAAGCATATCAGCATACTCT+AGG - chr2_4:31160660-31160679 None:intergenic 40.0%
AGAGTATGCTGATATGCTTC+AGG + chr2_4:31160660-31160679 Msa0325070:CDS 40.0%
!! TGATCAAAATGGGCTGACAT+TGG + chr2_4:31160717-31160736 Msa0325070:CDS 40.0%
TTATCGTTAGGGCTGTAAGT+TGG - chr2_4:31160844-31160863 None:intergenic 40.0%
ACTTACAGCCCTAACGATAA+TGG + chr2_4:31160844-31160863 Msa0325070:CDS 40.0%
! TCATATGTCCTTTTGTGCCT+TGG + chr2_4:31160867-31160886 Msa0325070:CDS 40.0%
ATTCAACTTCCACCATTCCA+AGG - chr2_4:31160887-31160906 None:intergenic 40.0%
! GAATGGTGGAAGTTGAATAG+CGG + chr2_4:31160889-31160908 Msa0325070:CDS 40.0%
! TCTGAAGCCACAGTAGATAT+TGG - chr2_4:31160961-31160980 None:intergenic 40.0%
! ATTGGCTTCGAGTATTGCAT+GGG + chr2_4:31161070-31161089 Msa0325070:CDS 40.0%
TGCTCATTGTTCTTGACCTA+TGG + chr2_4:31161315-31161334 Msa0325070:intron 40.0%
! CTGTGATGCATAAGCTTTTG+TGG + chr2_4:31161444-31161463 Msa0325070:intron 40.0%
GACATTTACGGGCATGTATA+AGG + chr2_4:31161591-31161610 Msa0325070:intron 40.0%
GGAGGTTCATCACCAAATGA+TGG + chr2_4:31159041-31159060 Msa0325070:CDS 45.0%
AAGCCCTCTTCTCCATCATT+TGG - chr2_4:31159056-31159075 None:intergenic 45.0%
GCAACACCGGAAAATGAAGT+TGG + chr2_4:31159140-31159159 Msa0325070:CDS 45.0%
CATCATAACCCAATGTGCAG+TGG - chr2_4:31159504-31159523 None:intergenic 45.0%
! AAAAAGTGCGTGACAGTGTG+AGG + chr2_4:31160071-31160090 Msa0325070:CDS 45.0%
GGTTCTCGATCTTGAAAACG+TGG - chr2_4:31160250-31160269 None:intergenic 45.0%
AGACATGGCAAATGCGATGA+AGG + chr2_4:31160465-31160484 Msa0325070:CDS 45.0%
AGGGTCCAAAACAGAAGCAA+GGG - chr2_4:31160533-31160552 None:intergenic 45.0%
TAGGGTCCAAAACAGAAGCA+AGG - chr2_4:31160534-31160553 None:intergenic 45.0%
!! TTGCTTCTGTTTTGGACCCT+AGG + chr2_4:31160533-31160552 Msa0325070:CDS 45.0%
GGACCCTAGGATCAAAATGA+TGG + chr2_4:31160546-31160565 Msa0325070:CDS 45.0%
! CTTCAGGAGCATAGAGAAGA+AGG + chr2_4:31160676-31160695 Msa0325070:CDS 45.0%
! TGTCCTTTTGTGCCTTGGAA+TGG + chr2_4:31160872-31160891 Msa0325070:CDS 45.0%
! TCAGAGTCAACTTTTAGCGC+CGG + chr2_4:31160976-31160995 Msa0325070:CDS 45.0%
!! GATTGGCTTCGAGTATTGCA+TGG + chr2_4:31161069-31161088 Msa0325070:CDS 45.0%
!!! TATCAATATTTTTTATTAAT+AGG + chr2_4:31161173-31161192 Msa0325070:intron 5.0%
AACGAGAAGCCACTGCACAT+TGG + chr2_4:31159492-31159511 Msa0325070:CDS 50.0%
ACGAGAAGCCACTGCACATT+GGG + chr2_4:31159493-31159512 Msa0325070:CDS 50.0%
ATATCAACACCACGTCGAGG+AGG - chr2_4:31159821-31159840 None:intergenic 50.0%
GCAATATCAACACCACGTCG+AGG - chr2_4:31159824-31159843 None:intergenic 50.0%
TTCTTGATTGCCCTACTCGC+TGG + chr2_4:31160173-31160192 Msa0325070:CDS 50.0%
ACATGGAGTTCCAGCGAGTA+GGG - chr2_4:31160186-31160205 None:intergenic 50.0%
TACATGGAGTTCCAGCGAGT+AGG - chr2_4:31160187-31160206 None:intergenic 50.0%
TTGGAGCCAACAAGAGACAC+AGG + chr2_4:31160736-31160755 Msa0325070:CDS 50.0%
TGGAGCCAACAAGAGACACA+GGG + chr2_4:31160737-31160756 Msa0325070:CDS 50.0%
CCACCATTCCAAGGCACAAA+AGG - chr2_4:31160878-31160897 None:intergenic 50.0%
! CCTTTTGTGCCTTGGAATGG+TGG + chr2_4:31160875-31160894 Msa0325070:CDS 50.0%
! CAGAGTCAACTTTTAGCGCC+GGG + chr2_4:31160977-31160996 Msa0325070:CDS 50.0%
! AGAGTCAACTTTTAGCGCCG+GGG + chr2_4:31160978-31160997 Msa0325070:CDS 50.0%
TGAGTCAATAACTCTCCCCC+CGG - chr2_4:31160998-31161017 None:intergenic 50.0%
GTTGAAGGCTGTGGCAAATG+TGG + chr2_4:31161809-31161828 Msa0325070:three_prime_UTR 50.0%
GTCTTGAAGGGGAGAGCAAT+TGG + chr2_4:31161846-31161865 Msa0325070:three_prime_UTR 50.0%
AGGGGAGAGCAATTGGAGTT+TGG + chr2_4:31161853-31161872 Msa0325070:three_prime_UTR 50.0%
AGCCAACAAGAGACACAGGG+TGG + chr2_4:31160740-31160759 Msa0325070:CDS 55.0%
GACCACCCTGTGTCTCTTGT+TGG - chr2_4:31160745-31160764 None:intergenic 55.0%
!! GAGTCAACTTTTAGCGCCGG+GGG + chr2_4:31160979-31160998 Msa0325070:CDS 55.0%
!! AGTCAACTTTTAGCGCCGGG+GGG + chr2_4:31160980-31160999 Msa0325070:CDS 55.0%
CATGTTCCTCCTCCTCGACG+TGG + chr2_4:31159809-31159828 Msa0325070:CDS 60.0%
TCAACACCACGTCGAGGAGG+AGG - chr2_4:31159818-31159837 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 31159011 31162014 31159011 ID=Msa0325070;Name=Msa0325070
chr2_4 mRNA 31159011 31162014 31159011 ID=Msa0325070-mRNA-1;Parent=Msa0325070;Name=Msa0325070-mRNA-1;_AED=0.05;_eAED=0.18;_QI=0|1|0.66|1|0.5|0.33|3|283|712
chr2_4 exon 31159011 31161110 31159011 ID=Msa0325070-mRNA-1:exon:10459;Parent=Msa0325070-mRNA-1
chr2_4 exon 31161195 31161243 31161195 ID=Msa0325070-mRNA-1:exon:10460;Parent=Msa0325070-mRNA-1
chr2_4 exon 31161742 31162014 31161742 ID=Msa0325070-mRNA-1:exon:10461;Parent=Msa0325070-mRNA-1
chr2_4 CDS 31159011 31161110 31159011 ID=Msa0325070-mRNA-1:cds;Parent=Msa0325070-mRNA-1
chr2_4 CDS 31161195 31161233 31161195 ID=Msa0325070-mRNA-1:cds;Parent=Msa0325070-mRNA-1
chr2_4 three_prime_UTR 31161234 31161243 31161234 ID=Msa0325070-mRNA-1:three_prime_utr;Parent=Msa0325070-mRNA-1
chr2_4 three_prime_UTR 31161742 31162014 31161742 ID=Msa0325070-mRNA-1:three_prime_utr;Parent=Msa0325070-mRNA-1
Gene Sequence

>Msa0325070

ATGTCAGCTAGTACGTCAATTGAATCATTGGGAGGTTCATCACCAAATGATGGAGAAGAGGGCTTAAGTTTGTTGAATCCTATCATTGACTTAGATGCGAATACAAACGAAGAACCACTAACAAATGAAGCAACACCGGAAAATGAAGTTGGGAATGAAGAGAATGTCGAGAACAACGATGCTGTTATTCAAAAGGCTAAGAGAAATAAAACTTCTCCAGTTTGGGATCACTTCAAAGAAGTGAAGTTAAAGGATGGAACAAAAAAATGGCAATGTTTACATTGTAAAAGAAATTATTTTGTTGTTGCAAGTGGATCGACTAGCCATTTGAAGAGACATTCAAGGGAAGTATGTCAGGTTTATAAGAAGCTAGCAGCACAACAACAAAAATTAAACTTGAAGCCAGCAAAAAGCATGATTGATGAGAAGCTTTCCGGACCACTACTTATGAATCCAAGTGCTAAATATGATCATGAGAGACAACGAGAAGCCACTGCACATTGGGTTATGATGCATGAACATCCATTTAGTATTGTTGAGGAAGAAGGTTTTCTTCTTATGATGAAATGTTCTAATTTTTCATATGAGAAAATTAGTCGGAAAACATTGAAGAATGATTGTGTTGCTGTCTATGAATCTGAAAGGAAGAAGTTAAAGTCAACTTTGAGGACAATAAATAAGATTTGCTTGACCACGGATTTATGGAAGTCACAAAATCAAAAGATAGAATACATGGTGCTAACTGGCCATTTCATTGATGCTGATTGGGTTTTGCAAAAGCGCGTTCTCAGTTTTGTTCATGTTCCTCCTCCTCGACGTGGTGTTGATATTGCTGATGCAATCTTTAAATGTCTCAAAGAATGGGGCATTGAAAATAAAATATTTAGTGTGTCGGTGGATAATGCATACTACAACGATAGATGTTTGAAAGAGCTAAAAGTTCTACTTTCAAGGCACCAAAAATTAGTGTTGGATGGAAAGTTGTTTCATGTCCGTTGTTGTGCCCATATACTAAACTTGCTTGTCCAAGATGGTATTGGAAGAATAAGAGAAATAGTTGAAAAAGTGCGTGACAGTGTGAGGTTTATCAATCAGTCTGAAGCAAGATTACGAACATTCTCGGAAATAGTTCAACAACTAAAGCTTGGTGGTAAAAAATTAATTCTTGATTGCCCTACTCGCTGGAACTCCATGTATCAAATGTTGTCAGTTGCAATGCAGTTCAAAGAAGCCTTTCCACGTTTTCAAGATCGAGAACCAAGTTATACAACTCTTCCAGATGAAGATGATTGGGAAAAAGTTGAAAAAGTTTGCAAGTTGCTAGAGGTATTTAATTCTGTTACAAATATAATTTCTGGTAGTGAATATCCAACTTCTAATTTATATCTTGCTGAGGTGTTTCAAATCAAGCAAGTGGTAGATCAAGCTGTTCAAGATGAGTCTAACTTCATGAAAGACATGGCAAATGCGATGAAGGAAAAATTTGACAAGTATTGGAGTCAGTGTAATCTTGTTATGTCCCTTGCTTCTGTTTTGGACCCTAGGATCAAAATGATGGGAGTAAACATGTGCTTTCCTTTAATTTACCCCGGAGATGAAGCTAGAAAAAATATAGAAAAGGTGCACAAGACTCTTAATGATATGTACCTAGAGTATGCTGATATGCTTCAGGAGCATAGAGAAGAAGGCTCTAGTAGAACTAGTGCTGATCAAAATGGGCTGACATTGGAGCCAACAAGAGACACAGGGTGGTCAAAGTTAATGAATTATGTCAAAGAACAACAAGCAATTCCTGCTGTAAAATCTGAAGTTCAAGAGTATCTGAATGAGCCAACTTACAGCCCTAACGATAATGGTCATATGTCCTTTTGTGCCTTGGAATGGTGGAAGTTGAATAGCGGAAAATATAGAGTATTATCTCATATGGCAGCAGATGTTCTTGCTATTCCAATATCTACTGTGGCTTCAGAGTCAACTTTTAGCGCCGGGGGGAGAGTTATTGACTCATTCCGAGCTTCTCTACATTCTTCTACCGTTGAAACTTTAATTTGTGGTGGTGATTGGCTTCGAGTATTGCATGGGATTAGAAACAAGCCTAAAGTGGAGCAGGTTCCGACAGAAATCACATTATTCCCTTGA

Protein sequence

>Msa0325070

MSASTSIESLGGSSPNDGEEGLSLLNPIIDLDANTNEEPLTNEATPENEVGNEENVENNDAVIQKAKRNKTSPVWDHFKEVKLKDGTKKWQCLHCKRNYFVVASGSTSHLKRHSREVCQVYKKLAAQQQKLNLKPAKSMIDEKLSGPLLMNPSAKYDHERQREATAHWVMMHEHPFSIVEEEGFLLMMKCSNFSYEKISRKTLKNDCVAVYESERKKLKSTLRTINKICLTTDLWKSQNQKIEYMVLTGHFIDADWVLQKRVLSFVHVPPPRRGVDIADAIFKCLKEWGIENKIFSVSVDNAYYNDRCLKELKVLLSRHQKLVLDGKLFHVRCCAHILNLLVQDGIGRIREIVEKVRDSVRFINQSEARLRTFSEIVQQLKLGGKKLILDCPTRWNSMYQMLSVAMQFKEAFPRFQDREPSYTTLPDEDDWEKVEKVCKLLEVFNSVTNIISGSEYPTSNLYLAEVFQIKQVVDQAVQDESNFMKDMANAMKEKFDKYWSQCNLVMSLASVLDPRIKMMGVNMCFPLIYPGDEARKNIEKVHKTLNDMYLEYADMLQEHREEGSSRTSADQNGLTLEPTRDTGWSKLMNYVKEQQAIPAVKSEVQEYLNEPTYSPNDNGHMSFCALEWWKLNSGKYRVLSHMAADVLAIPISTVASESTFSAGGRVIDSFRASLHSSTVETLICGGDWLRVLHGIRNKPKVEQVPTEITLFP*