Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971080 | XP_003618203.2 | 88.685 | 654 | 24 | 2 | 1 | 654 | 1 | 604 | 0.0 | 1139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971080 | sp|Q6NVR9|ATAD3_XENTR | 35.974 | 606 | 310 | 8 | 44 | 647 | 37 | 566 | 3.99e-110 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971080 | G7KHK9 | 88.685 | 654 | 24 | 2 | 1 | 654 | 1 | 604 | 0.0 | 1139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139350 | Msa0971080 | 0.803524 | 3.346178e-49 | -8.615850e-47 |
| Msa0971080 | Msa1153060 | 0.823538 | 1.312769e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971080 | MtrunA17_Chr6g0450161 | 88.685 | 654 | 24 | 2 | 1 | 654 | 1 | 604 | 0.0 | 1139 |
| Msa0971080 | MtrunA17_Chr4g0039781 | 64.750 | 661 | 174 | 4 | 1 | 653 | 1 | 610 | 0.0 | 820 |
| Msa0971080 | MtrunA17_Chr5g0404291 | 56.300 | 627 | 211 | 6 | 35 | 650 | 50 | 624 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971080 | AT3G03060.1 | 69.181 | 623 | 139 | 4 | 33 | 652 | 54 | 626 | 0.0 | 872 |
| Msa0971080 | AT5G16930.1 | 65.902 | 654 | 164 | 4 | 10 | 652 | 33 | 638 | 0.0 | 862 |
| Msa0971080 | AT2G18330.1 | 58.786 | 626 | 202 | 6 | 31 | 649 | 52 | 628 | 0.0 | 678 |
| Msa0971080 | AT4G36580.1 | 56.613 | 620 | 215 | 5 | 35 | 650 | 54 | 623 | 0.0 | 662 |
Find 162 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAGTGAAATCTTATTTA+AGG | 0.116790 | 6_4:-2738281 | Msa0971080:three_prime_UTR |
| TCTAAAATCATCTTTCTTAA+AGG | 0.156772 | 6_4:-2740852 | Msa0971080:CDS |
| CCTGATTGATGGGAAGATTT+TGG | 0.174586 | 6_4:-2738311 | Msa0971080:intron |
| GCCATTGTCTTCCCTGTTCC+TGG | 0.205135 | 6_4:+2741170 | None:intergenic |
| TCAAATAATGGAAAGGGTTT+TGG | 0.219162 | 6_4:-2741305 | Msa0971080:CDS |
| GGGAAGGTGCACGGGTTATT+TGG | 0.224243 | 6_4:-2741457 | Msa0971080:CDS |
| GGGATATGTTGATAGAATAT+TGG | 0.232274 | 6_4:-2741435 | Msa0971080:CDS |
| CCAGAATCTGTTTCAAATAA+TGG | 0.246142 | 6_4:-2741317 | Msa0971080:CDS |
| GGAAGGTGCACGGGTTATTT+GGG | 0.252159 | 6_4:-2741456 | Msa0971080:CDS |
| CCATTATTTGAAACAGATTC+TGG | 0.258534 | 6_4:+2741317 | None:intergenic |
| GCCATTCCTTCTTCATCTTC+AGG | 0.266934 | 6_4:-2744848 | Msa0971080:CDS |
| AATACTACCTTTGACCATAT+TGG | 0.291759 | 6_4:-2742155 | Msa0971080:CDS |
| CCACAAAAGATAGAGATTAA+AGG | 0.293367 | 6_4:-2738638 | Msa0971080:CDS |
| TGCTTCGTCATATGCTAAAA+AGG | 0.298502 | 6_4:-2744720 | Msa0971080:intron |
| TAAACCCCTATTGGACTTCT+TGG | 0.299729 | 6_4:+2739179 | None:intergenic |
| GTCCTAGAATTTCCCTTGCC+TGG | 0.304734 | 6_4:-2738761 | Msa0971080:CDS |
| CCCTTAACCACGATAATTCA+TGG | 0.309996 | 6_4:-2738170 | Msa0971080:three_prime_UTR |
| CCGTGAAGTCGTAGATTATA+AGG | 0.320677 | 6_4:-2738480 | Msa0971080:CDS |
| AATCCAAGGAGTGCTTCTTC+TGG | 0.327589 | 6_4:-2744794 | Msa0971080:CDS |
| GCTCTTGGTTCCTTACTCTA+TGG | 0.329815 | 6_4:+2742426 | None:intergenic |
| GCATCAACAAAGAATAAAAT+TGG | 0.330618 | 6_4:-2738450 | Msa0971080:CDS |
| GGCGGTGGTGGCGGCGGTTA+AGG | 0.332054 | 6_4:+2744892 | None:intergenic |
| CCCCAGGCAAGGGAAATTCT+AGG | 0.335721 | 6_4:+2738759 | None:intergenic |
| CAGTTTCGCTATTTCCCTTC+CGG | 0.338361 | 6_4:+2738565 | None:intergenic |
| CTTTATGTAACACTTGATTC+AGG | 0.344017 | 6_4:-2738227 | Msa0971080:three_prime_UTR |
| GATCCTGAACCTCTTGAAAA+AGG | 0.346940 | 6_4:-2744767 | Msa0971080:CDS |
| GGATATGTTGATAGAATATT+GGG | 0.347459 | 6_4:-2741434 | Msa0971080:CDS |
| GGAGTGACTGCTCTGGCAGC+CGG | 0.356065 | 6_4:-2741719 | Msa0971080:CDS |
| ACCATGAATTATCGTGGTTA+AGG | 0.365020 | 6_4:+2738169 | None:intergenic |
| GGAGACAAGGCAAGCTGAAT+TGG | 0.367167 | 6_4:-2744484 | Msa0971080:CDS |
| AGAGACGGTGGCGGTGGTGG+CGG | 0.374239 | 6_4:+2744883 | None:intergenic |
| CAAGCTGGATCAAGAAAATC+TGG | 0.381037 | 6_4:-2738686 | Msa0971080:CDS |
| AGAAAAGGTTCTGAGGGTTT+TGG | 0.381654 | 6_4:+2744979 | None:intergenic |
| ATTGAATTTAGAAAGACAAT+TGG | 0.391878 | 6_4:+2740812 | None:intergenic |
| AAGTCGAGAAAGGGTGCTTT+TGG | 0.394444 | 6_4:+2741346 | None:intergenic |
| TAATCAAATGAAAGCACAAT+TGG | 0.397234 | 6_4:-2744442 | Msa0971080:CDS |
| GAGTGACTGCTCTGGCAGCC+GGG | 0.400139 | 6_4:-2741718 | Msa0971080:CDS |
| TCCTAGAATTTCCCTTGCCT+GGG | 0.409654 | 6_4:-2738760 | Msa0971080:CDS |
| ATTGGGCCAAGAAGTCCAAT+AGG | 0.417609 | 6_4:-2739185 | Msa0971080:CDS |
| CTTATTACGATCTGTTAGAA+TGG | 0.422073 | 6_4:+2741760 | None:intergenic |
| GATACACGAGTTGTTTGATT+GGG | 0.423129 | 6_4:-2739202 | Msa0971080:CDS |
| GAAAGAGACGGTGGCGGTGG+TGG | 0.423161 | 6_4:+2744880 | None:intergenic |
| TGTGAAGAATGGTGAAGAAA+AGG | 0.423543 | 6_4:+2744964 | None:intergenic |
| GACGGTGGCGGTGGTGGCGG+CGG | 0.424736 | 6_4:+2744886 | None:intergenic |
| ATGGCGAAAACCACTTTATC+CGG | 0.429316 | 6_4:-2744926 | Msa0971080:CDS |
| CCATGAATTATCGTGGTTAA+GGG | 0.432002 | 6_4:+2738170 | None:intergenic |
| ATTTCCCTTGCCTGGGGAAG+AGG | 0.433738 | 6_4:-2738753 | Msa0971080:CDS |
| AGTGTCCAAGCTGCCGTGTA+TGG | 0.437138 | 6_4:-2738536 | Msa0971080:CDS |
| ACAGCACTTGCAAAAGCAAA+AGG | 0.438572 | 6_4:-2742272 | Msa0971080:CDS |
| TTGAATTTAGAAAGACAATT+GGG | 0.444062 | 6_4:+2740813 | None:intergenic |
| CAGAGAGTTGGCTTACAAAT+CGG | 0.447484 | 6_4:-2741144 | Msa0971080:intron |
| TTGGGCCAAGAAGTCCAATA+GGG | 0.448894 | 6_4:-2739184 | Msa0971080:CDS |
| CAAGGACTATGTCTTTAGAT+TGG | 0.454660 | 6_4:+2738843 | None:intergenic |
| TCTGTTTCAAATAATGGAAA+GGG | 0.454708 | 6_4:-2741311 | Msa0971080:CDS |
| CCTTATAATCTACGACTTCA+CGG | 0.459640 | 6_4:+2738480 | None:intergenic |
| CTGGTTTAGCAAGTCGAGAA+AGG | 0.462717 | 6_4:+2741336 | None:intergenic |
| AGATACACGAGTTGTTTGAT+TGG | 0.464111 | 6_4:-2739203 | Msa0971080:CDS |
| TCGAGAAAACGTGCCAGACC+AGG | 0.465385 | 6_4:+2741370 | None:intergenic |
| AGACCAGGGGTATTTCCCTC+TGG | 0.471013 | 6_4:+2741385 | None:intergenic |
| ATTGAGCGATGATATCATAA+AGG | 0.472275 | 6_4:-2738615 | Msa0971080:CDS |
| GCCCTTGCGACGAACCGTCC+TGG | 0.475674 | 6_4:-2738821 | Msa0971080:CDS |
| ATCTCAGATGGCTAAATATG+AGG | 0.478813 | 6_4:-2742574 | Msa0971080:CDS |
| CTAAATCACCCTTCTCAAGT+TGG | 0.479623 | 6_4:+2742204 | None:intergenic |
| AGGATGAGTTGGCAAGGAAG+AGG | 0.479629 | 6_4:-2742554 | Msa0971080:CDS |
| CACCAGGACGGTTCGTCGCA+AGG | 0.481861 | 6_4:+2738819 | None:intergenic |
| CGCTTCCATACACGGCAGCT+TGG | 0.482291 | 6_4:+2738531 | None:intergenic |
| ACCCGCTTTCGAAGATGAAT+CGG | 0.491673 | 6_4:+2744823 | None:intergenic |
| TGTTGCTCCACTCGGATCAC+AGG | 0.494047 | 6_4:-2739235 | Msa0971080:CDS |
| AAAATGAGTACCATAGAGTA+AGG | 0.494834 | 6_4:-2742436 | Msa0971080:CDS |
| TTGTCTTCCCTGTTCCTGGA+GGG | 0.498774 | 6_4:+2741174 | None:intergenic |
| GGCTAAATATGAGGATGAGT+TGG | 0.500126 | 6_4:-2742565 | Msa0971080:CDS |
| AGAGGGAAATACCCCTGGTC+TGG | 0.500897 | 6_4:-2741383 | Msa0971080:CDS |
| TGAAAACACAAAATTACATC+AGG | 0.504750 | 6_4:-2741225 | Msa0971080:CDS |
| AATGCCCTTCTCTTTCGTAC+TGG | 0.505763 | 6_4:-2738869 | Msa0971080:CDS |
| CGCTCCTCTTCCCCAGGCAA+GGG | 0.507955 | 6_4:+2738749 | None:intergenic |
| GACGGTTCGTCGCAAGGGCA+AGG | 0.508323 | 6_4:+2738825 | None:intergenic |
| TGAAGAAGGAATGGCGCCAT+CGG | 0.514941 | 6_4:+2744856 | None:intergenic |
| GCAAGCTGAATTGGCTGCTA+AGG | 0.515586 | 6_4:-2744475 | Msa0971080:CDS |
| ATTTCCCTCTGGAGGACTCT+CGG | 0.515937 | 6_4:+2741396 | None:intergenic |
| TGAGATATTGAAGAAACAAG+AGG | 0.518331 | 6_4:-2744505 | Msa0971080:CDS |
| ATCTGTTTCAAATAATGGAA+AGG | 0.518634 | 6_4:-2741312 | Msa0971080:CDS |
| AATCCAGAAGAAGCACTCCT+TGG | 0.521894 | 6_4:+2744791 | None:intergenic |
| CGATTTGTAAGCCAACTCTC+TGG | 0.521968 | 6_4:+2741145 | None:intergenic |
| GACAAGTACATAGCTCAAGC+TGG | 0.523738 | 6_4:-2738701 | Msa0971080:CDS |
| TGGTTTAGCAAGTCGAGAAA+GGG | 0.525545 | 6_4:+2741337 | None:intergenic |
| ACGCTCCTCTTCCCCAGGCA+AGG | 0.527101 | 6_4:+2738748 | None:intergenic |
| TCTAACAGATCGTAATAAGT+TGG | 0.527875 | 6_4:-2741756 | Msa0971080:CDS |
| TGGTGAAGAAAAGGTTCTGA+GGG | 0.528739 | 6_4:+2744973 | None:intergenic |
| GAGGACTCTCGGATCAATGA+TGG | 0.530746 | 6_4:+2741407 | None:intergenic |
| CTTGAGCTATGTACTTGTCT+AGG | 0.530944 | 6_4:+2738705 | None:intergenic |
| GGAGAAAGAGACGGTGGCGG+TGG | 0.532338 | 6_4:+2744877 | None:intergenic |
| ACCAGGACGGTTCGTCGCAA+GGG | 0.533090 | 6_4:+2738820 | None:intergenic |
| GAAGGTGCACGGGTTATTTG+GGG | 0.534601 | 6_4:-2741455 | Msa0971080:CDS |
| ACCGATTCATCTTCGAAAGC+GGG | 0.534856 | 6_4:-2744824 | Msa0971080:CDS |
| TTGGATTATGCATTGATGAC+TGG | 0.537644 | 6_4:-2739264 | Msa0971080:CDS |
| CCTCCAGAGGGAAATACCCC+TGG | 0.539942 | 6_4:-2741388 | Msa0971080:CDS |
| CTAATGTAGGGAAGGTGCAC+GGG | 0.540661 | 6_4:-2741465 | Msa0971080:intron |
| AAGTTGGTCGTAACAGTTGG+TGG | 0.542001 | 6_4:-2741740 | Msa0971080:CDS |
| ACTACCTTTGACCATATTGG+AGG | 0.546392 | 6_4:-2742152 | Msa0971080:intron |
| TTAAAACGCTCCTCTTCCCC+AGG | 0.548339 | 6_4:+2738743 | None:intergenic |
| TGCAGTTATTAGCTTACAAG+TGG | 0.548430 | 6_4:-2740764 | Msa0971080:CDS |
| GGTTAAGGCTGAGAATAAAC+CGG | 0.551769 | 6_4:+2744907 | None:intergenic |
| TGAGAATAAACCGGATAAAG+TGG | 0.552481 | 6_4:+2744916 | None:intergenic |
| GACAATGGCTGCCAGAGAGT+TGG | 0.552771 | 6_4:-2741156 | Msa0971080:CDS |
| TAGTAAGAGAATTGAGCAGC+TGG | 0.554062 | 6_4:-2741258 | Msa0971080:CDS |
| CCTAATGTAGGGAAGGTGCA+CGG | 0.555109 | 6_4:-2741466 | Msa0971080:intron |
| CAGGAGAAACCAACTTGAGA+AGG | 0.557237 | 6_4:-2742213 | Msa0971080:CDS |
| TCGGTTCCTGAAGATGAAGA+AGG | 0.559401 | 6_4:+2744842 | None:intergenic |
| ATTGTCTTCCCTGTTCCTGG+AGG | 0.560179 | 6_4:+2741173 | None:intergenic |
| TTCCCTTCCGGAAAACCCAT+CGG | 0.562220 | 6_4:+2738577 | None:intergenic |
| TCCTGAAGATGAAGAAGGAA+TGG | 0.562260 | 6_4:+2744847 | None:intergenic |
| GTTGGCAAGGAAGAGGATGC+AGG | 0.565436 | 6_4:-2742547 | Msa0971080:intron |
| AGAAGATTCATCAATCAGAC+TGG | 0.565440 | 6_4:-2742390 | Msa0971080:CDS |
| GGAGGAGATGTTGCTCCACT+CGG | 0.565757 | 6_4:-2739243 | Msa0971080:CDS |
| ATTCTAGGACCTCATCAATA+CGG | 0.565931 | 6_4:+2738774 | None:intergenic |
| GCCACCGTCTCTTTCTCCGA+TGG | 0.566191 | 6_4:-2744872 | Msa0971080:CDS |
| AGTGACTGCTCTGGCAGCCG+GGG | 0.566373 | 6_4:-2741717 | Msa0971080:CDS |
| GGTCTGCTACAGCTGAATCA+AGG | 0.566819 | 6_4:+2738795 | None:intergenic |
| TCAATTCTCTTACTAAGAGA+AGG | 0.575379 | 6_4:+2741266 | None:intergenic |
| TCAAGTGTTACATAAAGTCA+TGG | 0.577090 | 6_4:+2738233 | None:intergenic |
| TTTACCTCCAATATGGTCAA+AGG | 0.577286 | 6_4:+2742148 | None:intergenic |
| CAGCACTTGCAAAAGCAAAA+GGG | 0.577360 | 6_4:-2742271 | Msa0971080:CDS |
| AGTTGGTGGAGTGACTGCTC+TGG | 0.577512 | 6_4:-2741726 | Msa0971080:CDS |
| AATAAGTTGGTCGTAACAGT+TGG | 0.580574 | 6_4:-2741743 | Msa0971080:CDS |
| AAAGCAAACTGTAGAGGAGA+AGG | 0.582383 | 6_4:-2742324 | Msa0971080:CDS |
| ACAGTTGTCGCTTCCATACA+CGG | 0.583469 | 6_4:+2738523 | None:intergenic |
| CGAGAAAACGTGCCAGACCA+GGG | 0.583981 | 6_4:+2741371 | None:intergenic |
| ATGGTGAAGAAAAGGTTCTG+AGG | 0.593657 | 6_4:+2744972 | None:intergenic |
| GAAGCCGCAGCTAAAACCGA+TGG | 0.596969 | 6_4:-2738593 | Msa0971080:CDS |
| TGAAGAAACAAGAGGAGACA+AGG | 0.599789 | 6_4:-2744497 | Msa0971080:CDS |
| ATACCTTGTTGTGTAGACCC+CGG | 0.606322 | 6_4:+2741700 | None:intergenic |
| GGTCACCAGTACGAAAGAGA+AGG | 0.606869 | 6_4:+2738864 | None:intergenic |
| AGGAGAAACCAACTTGAGAA+GGG | 0.608125 | 6_4:-2742212 | Msa0971080:CDS |
| GTCACCAGTACGAAAGAGAA+GGG | 0.611997 | 6_4:+2738865 | None:intergenic |
| GGCACAAACAAAATCTCAGA+TGG | 0.613066 | 6_4:-2742586 | Msa0971080:CDS |
| AATATGAGGATGAGTTGGCA+AGG | 0.615642 | 6_4:-2742560 | Msa0971080:CDS |
| AACCGATTCATCTTCGAAAG+CGG | 0.617854 | 6_4:-2744825 | Msa0971080:CDS |
| CACGGAACAAGCTTGCGTCA+AGG | 0.619585 | 6_4:+2738498 | None:intergenic |
| CAGCCGGGGTCTACACAACA+AGG | 0.619731 | 6_4:-2741703 | Msa0971080:intron |
| GCAGTTATTAGCTTACAAGT+GGG | 0.620509 | 6_4:-2740763 | Msa0971080:intron |
| AAGCGGGTAACGATAATCCA+AGG | 0.630177 | 6_4:-2744808 | Msa0971080:CDS |
| ATCGGAGAAAGAGACGGTGG+CGG | 0.632706 | 6_4:+2744874 | None:intergenic |
| AAGCCGCAGCTAAAACCGAT+GGG | 0.633631 | 6_4:-2738592 | Msa0971080:CDS |
| TTTATGGCCCTCCAGGAACA+GGG | 0.634037 | 6_4:-2741181 | Msa0971080:CDS |
| ACAGCTGAATCAAGGTCACC+AGG | 0.637144 | 6_4:+2738803 | None:intergenic |
| AAGGGAAATAGCGAAACTGA+TGG | 0.642775 | 6_4:-2738561 | Msa0971080:CDS |
| CCTAGAATTTCCCTTGCCTG+GGG | 0.646412 | 6_4:-2738759 | Msa0971080:CDS |
| GTTACAGCCTGTGATCCGAG+TGG | 0.647718 | 6_4:+2739228 | None:intergenic |
| CTGAATCAAGGTCACCAGGA+CGG | 0.653067 | 6_4:+2738807 | None:intergenic |
| ACTACGAAAGCAAACTGTAG+AGG | 0.655152 | 6_4:-2742330 | Msa0971080:CDS |
| TCAATCACCATGAATTATCG+TGG | 0.662698 | 6_4:+2738163 | None:intergenic |
| GGCGCCATCGGAGAAAGAGA+CGG | 0.665134 | 6_4:+2744868 | None:intergenic |
| TGTAGCAGACCGTATTGATG+AGG | 0.665500 | 6_4:-2738783 | Msa0971080:CDS |
| TGGGCCAAGAAGTCCAATAG+GGG | 0.667815 | 6_4:-2739183 | Msa0971080:CDS |
| GATTATGCATTGATGACTGG+AGG | 0.668224 | 6_4:-2739261 | Msa0971080:CDS |
| TCCAGGAACAGGGAAGACAA+TGG | 0.668408 | 6_4:-2741171 | Msa0971080:CDS |
| CCAGGGGTATTTCCCTCTGG+AGG | 0.673340 | 6_4:+2741388 | None:intergenic |
| TGATCCGAGAGTCCTCCAGA+GGG | 0.678628 | 6_4:-2741400 | Msa0971080:CDS |
| TTGATCCGAGAGTCCTCCAG+AGG | 0.688066 | 6_4:-2741401 | Msa0971080:CDS |
| GAGAAAACGTGCCAGACCAG+GGG | 0.697208 | 6_4:+2741372 | None:intergenic |
| TAAAGCTTAGTTAGTGCACG+AGG | 0.699195 | 6_4:-2738417 | Msa0971080:exon |
| GCCATCGGAGAAAGAGACGG+TGG | 0.704426 | 6_4:+2744871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATATATATTTT+CGG | - | chr6_4:2739767-2739786 | Msa0971080:intron | 0.0% |
| !! | ATTATATATTAAATATAAAA+AGG | - | chr6_4:2743716-2743735 | Msa0971080:intron | 0.0% |
| !!! | TATGTTTAATATTTTATTTG+TGG | - | chr6_4:2738586-2738605 | Msa0971080:CDS | 10.0% |
| !!! | TTTTTGTTTTTTTTTTTTGA+AGG | - | chr6_4:2738615-2738634 | Msa0971080:CDS | 10.0% |
| !! | TACAATAATAAAAATTTGAT+AGG | + | chr6_4:2740214-2740233 | None:intergenic | 10.0% |
| !!! | AGTTAATATTTATTTTTTGA+AGG | - | chr6_4:2742762-2742781 | Msa0971080:intron | 10.0% |
| !! | TAATAACATGCAAATTTATT+TGG | + | chr6_4:2739290-2739309 | None:intergenic | 15.0% |
| !!! | AACATGAAACATATTTTTTT+TGG | + | chr6_4:2742085-2742104 | None:intergenic | 15.0% |
| !! | TATAAAAAATCTGAAAAATG+AGG | + | chr6_4:2742216-2742235 | None:intergenic | 15.0% |
| !!! | AACGAAATATTTTAATATCA+AGG | - | chr6_4:2743536-2743555 | Msa0971080:intron | 15.0% |
| !!! | CATCTTTTTTTTTTTTTGAA+TGG | - | chr6_4:2743684-2743703 | Msa0971080:intron | 15.0% |
| !!! | AAAATATCATTTTAACTAGA+AGG | + | chr6_4:2743829-2743848 | None:intergenic | 15.0% |
| !!! | TTTGTTTTCAATTTAAATTC+AGG | - | chr6_4:2743858-2743877 | Msa0971080:intron | 15.0% |
| !!! | TTGTTTTCAATTTAAATTCA+GGG | - | chr6_4:2743859-2743878 | Msa0971080:intron | 15.0% |
| !! | ATAATAATATATGAAAAGCA+TGG | + | chr6_4:2744053-2744072 | None:intergenic | 15.0% |
| !!! | TTATAGTGAAATCTTATTTA+AGG | - | chr6_4:2744866-2744885 | Msa0971080:CDS | 15.0% |
| !!! | TATCATCTGAGTTTTAATTA+CGG | + | chr6_4:2739162-2739181 | None:intergenic | 20.0% |
| !!! | TTATTATACACATGTTTTCT+TGG | - | chr6_4:2739362-2739381 | Msa0971080:intron | 20.0% |
| !!! | TATTATACACATGTTTTCTT+GGG | - | chr6_4:2739363-2739382 | Msa0971080:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATCAA+CGG | + | chr6_4:2739562-2739581 | None:intergenic | 20.0% |
| !!! | TATATTTTCAGACAATGAAA+TGG | + | chr6_4:2739687-2739706 | None:intergenic | 20.0% |
| !!! | TATATATTTTCGGTATTAGA+TGG | - | chr6_4:2739777-2739796 | Msa0971080:intron | 20.0% |
| !!! | ATTTCTGTGTAAGTTTTTTT+TGG | - | chr6_4:2739973-2739992 | Msa0971080:intron | 20.0% |
| !! | AACAATAATAACAATGTTTC+AGG | - | chr6_4:2740168-2740187 | Msa0971080:intron | 20.0% |
| !! | ACAATAATAACAATGTTTCA+GGG | - | chr6_4:2740169-2740188 | Msa0971080:intron | 20.0% |
| !! | ATTAAACTGATAGAACATTA+TGG | + | chr6_4:2740312-2740331 | None:intergenic | 20.0% |
| !!! | ATTAAACCTTTTGAAACTTT+GGG | - | chr6_4:2740629-2740648 | Msa0971080:intron | 20.0% |
| !! | TAAAAAATTTACCTCCAATA+TGG | + | chr6_4:2741009-2741028 | None:intergenic | 20.0% |
| !!! | ATAATTGAGTTTTCAGATTT+GGG | + | chr6_4:2741346-2741365 | None:intergenic | 20.0% |
| !! | TATAAATTGTCCATAAAGTT+TGG | - | chr6_4:2741467-2741486 | Msa0971080:intron | 20.0% |
| !!! | TTGTATATTCTCTAAAAATG+GGG | + | chr6_4:2741557-2741576 | None:intergenic | 20.0% |
| !!! | GTTGTATATTCTCTAAAAAT+GGG | + | chr6_4:2741558-2741577 | None:intergenic | 20.0% |
| !!! | AGTTGTATATTCTCTAAAAA+TGG | + | chr6_4:2741559-2741578 | None:intergenic | 20.0% |
| !! | AATTAGAACAAGAAGATAAA+TGG | + | chr6_4:2742046-2742065 | None:intergenic | 20.0% |
| !! | ATATTCCTCTTTATAATTTC+TGG | - | chr6_4:2742235-2742254 | Msa0971080:CDS | 20.0% |
| !!! | TCTAAAATCATCTTTCTTAA+AGG | - | chr6_4:2742295-2742314 | Msa0971080:CDS | 20.0% |
| !! | TTGAATTTAGAAAGACAATT+GGG | + | chr6_4:2742337-2742356 | None:intergenic | 20.0% |
| !! | ATTGAATTTAGAAAGACAAT+TGG | + | chr6_4:2742338-2742357 | None:intergenic | 20.0% |
| !! | TCTTCTAACCTAAAAAAATA+GGG | - | chr6_4:2742945-2742964 | Msa0971080:intron | 20.0% |
| !!! | TATATTCTATCTAATTTGTG+CGG | - | chr6_4:2743168-2743187 | Msa0971080:intron | 20.0% |
| !!! | AATTTTTTAATAACGTATCG+AGG | - | chr6_4:2743305-2743324 | Msa0971080:intron | 20.0% |
| !!! | ACAATAACTCTTTTGATATA+AGG | - | chr6_4:2743432-2743451 | Msa0971080:intron | 20.0% |
| !! | AAAAGATGCAATTCATAAAA+CGG | + | chr6_4:2743672-2743691 | None:intergenic | 20.0% |
| !! | AAAAAAATGATGAGCAAATA+AGG | + | chr6_4:2743792-2743811 | None:intergenic | 20.0% |
| !! | TAATCAAATGAAAGCACAAT+TGG | - | chr6_4:2738705-2738724 | Msa0971080:CDS | 25.0% |
| !! | TCTGACAACTTTCTTTTTAT+TGG | - | chr6_4:2738892-2738911 | Msa0971080:CDS | 25.0% |
| !!! | ACAATTTTACAGCCATTTTT+CGG | + | chr6_4:2738976-2738995 | None:intergenic | 25.0% |
| ! | TAGTAGTAATTGCATGTTAT+CGG | - | chr6_4:2739134-2739153 | Msa0971080:intron | 25.0% |
| !!! | ATCATCTGAGTTTTAATTAC+GGG | + | chr6_4:2739161-2739180 | None:intergenic | 25.0% |
| ! | TGATTAAATGTAACATCTGT+TGG | - | chr6_4:2739585-2739604 | Msa0971080:intron | 25.0% |
| ! | TCATTCATGATAACTATTCA+AGG | + | chr6_4:2739818-2739837 | None:intergenic | 25.0% |
| ! | GAATAGTTATCATGAATGAA+TGG | - | chr6_4:2739819-2739838 | Msa0971080:intron | 25.0% |
| ! | CAATAATAACAATGTTTCAG+GGG | - | chr6_4:2740170-2740189 | Msa0971080:intron | 25.0% |
| ! | TAAAAATTTGATAGGCAGTA+TGG | + | chr6_4:2740206-2740225 | None:intergenic | 25.0% |
| !! | TTTTATTGCAAGTACAAGTA+TGG | - | chr6_4:2740383-2740402 | Msa0971080:intron | 25.0% |
| ! | CACATATCTTCAATTGTTTA+AGG | + | chr6_4:2740409-2740428 | None:intergenic | 25.0% |
| !!! | CATTAAACCTTTTGAAACTT+TGG | - | chr6_4:2740628-2740647 | Msa0971080:intron | 25.0% |
| !! | ATTCTCACATTTTTATTGTC+AGG | - | chr6_4:2740685-2740704 | Msa0971080:intron | 25.0% |
| ! | CATAATATATAGTTCGTATC+TGG | + | chr6_4:2741032-2741051 | None:intergenic | 25.0% |
| !!! | ACTCAATCAATATTTTTGCT+TGG | - | chr6_4:2741293-2741312 | Msa0971080:CDS | 25.0% |
| !! | TAATTGAGTTTTCAGATTTG+GGG | + | chr6_4:2741345-2741364 | None:intergenic | 25.0% |
| !! | GATAATTGAGTTTTCAGATT+TGG | + | chr6_4:2741347-2741366 | None:intergenic | 25.0% |
| !! | AAAACTCAATTATCTTTTGC+AGG | - | chr6_4:2741353-2741372 | Msa0971080:CDS | 25.0% |
| !! | AAACTCAATTATCTTTTGCA+GGG | - | chr6_4:2741354-2741373 | Msa0971080:CDS | 25.0% |
| !! | GGATATGTTGATAGAATATT+GGG | - | chr6_4:2741713-2741732 | Msa0971080:CDS | 25.0% |
| !! | ATCTGTTTCAAATAATGGAA+AGG | - | chr6_4:2741835-2741854 | Msa0971080:intron | 25.0% |
| !! | TCTGTTTCAAATAATGGAAA+GGG | - | chr6_4:2741836-2741855 | Msa0971080:intron | 25.0% |
| ! | TGAAAACACAAAATTACATC+AGG | - | chr6_4:2741922-2741941 | Msa0971080:intron | 25.0% |
| ! | TGATCACTTCTACTTAATAT+AGG | + | chr6_4:2742173-2742192 | None:intergenic | 25.0% |
| !!! | TTGGAATTTTGATACATTGA+AGG | + | chr6_4:2742500-2742519 | None:intergenic | 25.0% |
| !!! | TTTTGAAGGAAAAAAATGAC+CGG | - | chr6_4:2742776-2742795 | Msa0971080:intron | 25.0% |
| !! | AATATGTAAGACAGAAGTAT+AGG | + | chr6_4:2742849-2742868 | None:intergenic | 25.0% |
| ! | AAGAAATAAAACTACAAGTC+TGG | - | chr6_4:2742898-2742917 | Msa0971080:intron | 25.0% |
| ! | CTCTTCTAACCTAAAAAAAT+AGG | - | chr6_4:2742944-2742963 | Msa0971080:intron | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+GGG | + | chr6_4:2743423-2743442 | None:intergenic | 25.0% |
| ! | AAGAGTTATTGTGAGTATTA+AGG | + | chr6_4:2743424-2743443 | None:intergenic | 25.0% |
| ! | ACAATAAGTAAGTCTATTGA+AGG | - | chr6_4:2743496-2743515 | Msa0971080:intron | 25.0% |
| ! | AAAGATGCAATTCATAAAAC+GGG | + | chr6_4:2743671-2743690 | None:intergenic | 25.0% |
| ! | TTCAATTTAAATTCAGGGAT+TGG | - | chr6_4:2743864-2743883 | Msa0971080:intron | 25.0% |
| !! | AATATATGAAAAGCATGGAA+TGG | + | chr6_4:2744048-2744067 | None:intergenic | 25.0% |
| ! | TCATATATTATTATCCGACT+CGG | - | chr6_4:2744059-2744078 | Msa0971080:intron | 25.0% |
| ! | AAAAGTAATGAAATTGCATC+TGG | + | chr6_4:2744117-2744136 | None:intergenic | 25.0% |
| !! | CTTTAATCTCTATCTTTTGT+GGG | + | chr6_4:2744511-2744530 | None:intergenic | 25.0% |
| ! | GCATCAACAAAGAATAAAAT+TGG | - | chr6_4:2744697-2744716 | Msa0971080:intron | 25.0% |
| TGAGATATTGAAGAAACAAG+AGG | - | chr6_4:2738642-2738661 | Msa0971080:CDS | 30.0% | |
| ACTGACAACATAAGAATTTC+TGG | + | chr6_4:2738747-2738766 | None:intergenic | 30.0% | |
| ! | AGCATTTTTGTATGCGAAAT+AGG | - | chr6_4:2738831-2738850 | Msa0971080:CDS | 30.0% |
| CATAAGTAGAACTCAAAAGA+TGG | - | chr6_4:2739009-2739028 | Msa0971080:intron | 30.0% | |
| !!! | TATGTAGTTTTGTAGCTTGA+AGG | - | chr6_4:2739469-2739488 | Msa0971080:intron | 30.0% |
| ! | TATTTTCGGTATTAGATGGA+TGG | - | chr6_4:2739781-2739800 | Msa0971080:intron | 30.0% |
| TTTACATGAGTCTGTATCAT+GGG | - | chr6_4:2739855-2739874 | Msa0971080:intron | 30.0% | |
| ! | TCGTTTGAATTTTATCCCAT+TGG | - | chr6_4:2739905-2739924 | Msa0971080:intron | 30.0% |
| ! | CGTTTGAATTTTATCCCATT+GGG | - | chr6_4:2739906-2739925 | Msa0971080:intron | 30.0% |
| ! | GTTTGAATTTTATCCCATTG+GGG | - | chr6_4:2739907-2739926 | Msa0971080:intron | 30.0% |
| GACAGTAATGTCCTAATTAT+GGG | + | chr6_4:2739949-2739968 | None:intergenic | 30.0% | |
| AGACAGTAATGTCCTAATTA+TGG | + | chr6_4:2739950-2739969 | None:intergenic | 30.0% | |
| TAATTAGGACATTACTGTCT+AGG | - | chr6_4:2739950-2739969 | Msa0971080:intron | 30.0% | |
| AAGTCCAGAGTTTGAAAATA+CGG | + | chr6_4:2740013-2740032 | None:intergenic | 30.0% | |
| ! | AACAACTTCAAAGTATTCGT+AGG | - | chr6_4:2740112-2740131 | Msa0971080:intron | 30.0% |
| ATTATGGCGTAATTTGATCA+AGG | + | chr6_4:2740296-2740315 | None:intergenic | 30.0% | |
| ! | TCTGTGTGTATTTTGTGTTT+TGG | - | chr6_4:2740456-2740475 | Msa0971080:intron | 30.0% |
| ATATGACGAAGAAAAAAAGC+TGG | - | chr6_4:2740528-2740547 | Msa0971080:intron | 30.0% | |
| CAAAAACCCAAAGTTTCAAA+AGG | + | chr6_4:2740638-2740657 | None:intergenic | 30.0% | |
| AAAATGAGTACCATAGAGTA+AGG | - | chr6_4:2740711-2740730 | Msa0971080:intron | 30.0% | |
| GTGATTTAGATCGAGAAAAA+TGG | - | chr6_4:2740957-2740976 | Msa0971080:intron | 30.0% | |
| AATACTACCTTTGACCATAT+TGG | - | chr6_4:2740992-2741011 | Msa0971080:intron | 30.0% | |
| !! | CATCGTGAATTCGTTTTTAA+AGG | + | chr6_4:2741114-2741133 | None:intergenic | 30.0% |
| ! | TCAGCATAATTGTAGTTTGT+TGG | - | chr6_4:2741192-2741211 | Msa0971080:CDS | 30.0% |
| !! | GTGAAGCATTGTATCTTAAT+TGG | - | chr6_4:2741263-2741282 | Msa0971080:CDS | 30.0% |
| !! | AATCAATATTTTTGCTTGGC+TGG | - | chr6_4:2741297-2741316 | Msa0971080:CDS | 30.0% |
| !! | ATCAATATTTTTGCTTGGCT+GGG | - | chr6_4:2741298-2741317 | Msa0971080:CDS | 30.0% |
| ! | AACTCAATTATCTTTTGCAG+GGG | - | chr6_4:2741355-2741374 | Msa0971080:CDS | 30.0% |
| CTTATTACGATCTGTTAGAA+TGG | + | chr6_4:2741390-2741409 | None:intergenic | 30.0% | |
| TCTAACAGATCGTAATAAGT+TGG | - | chr6_4:2741391-2741410 | Msa0971080:CDS | 30.0% | |
| GAAATAGTCTGATAGATAGA+GGG | + | chr6_4:2741593-2741612 | None:intergenic | 30.0% | |
| AGAAATAGTCTGATAGATAG+AGG | + | chr6_4:2741594-2741613 | None:intergenic | 30.0% | |
| ATTCAGATTGTACCTAATGT+AGG | - | chr6_4:2741669-2741688 | Msa0971080:intron | 30.0% | |
| TTCAGATTGTACCTAATGTA+GGG | - | chr6_4:2741670-2741689 | Msa0971080:intron | 30.0% | |
| ! | GGGATATGTTGATAGAATAT+TGG | - | chr6_4:2741712-2741731 | Msa0971080:CDS | 30.0% |
| ! | CCATTATTTGAAACAGATTC+TGG | + | chr6_4:2741833-2741852 | None:intergenic | 30.0% |
| CCAGAATCTGTTTCAAATAA+TGG | - | chr6_4:2741830-2741849 | Msa0971080:intron | 30.0% | |
| !! | TCAAATAATGGAAAGGGTTT+TGG | - | chr6_4:2741842-2741861 | Msa0971080:intron | 30.0% |
| TCAATTCTCTTACTAAGAGA+AGG | + | chr6_4:2741884-2741903 | None:intergenic | 30.0% | |
| ! | TAAAAAAGCACGTTTCTGAA+TGG | + | chr6_4:2741950-2741969 | None:intergenic | 30.0% |
| !!! | TTCAGAAACGTGCTTTTTTA+TGG | - | chr6_4:2741950-2741969 | Msa0971080:intron | 30.0% |
| GTAGAAGTGATCAACATATT+AGG | - | chr6_4:2742180-2742199 | Msa0971080:CDS | 30.0% | |
| AATTCCACAGAAAAAGAACT+TGG | + | chr6_4:2742362-2742381 | None:intergenic | 30.0% | |
| !!! | TGGTTATTGCTGTTTTATGA+AGG | - | chr6_4:2742425-2742444 | Msa0971080:CDS | 30.0% |
| ! | TGAAGGTGTAATAATCACTT+TGG | - | chr6_4:2742442-2742461 | Msa0971080:CDS | 30.0% |
| AAGGGGTTATTTAAGCTTTA+GGG | + | chr6_4:2742561-2742580 | None:intergenic | 30.0% | |
| TAAGGGGTTATTTAAGCTTT+AGG | + | chr6_4:2742562-2742581 | None:intergenic | 30.0% | |
| ! | ATACGATACTTCACCATTTT+TGG | + | chr6_4:2742605-2742624 | None:intergenic | 30.0% |
| TTTGAAGGAAAAAAATGACC+GGG | - | chr6_4:2742777-2742796 | Msa0971080:intron | 30.0% | |
| !!! | ACGAGAAACCCTATTTTTTT+AGG | + | chr6_4:2742956-2742975 | None:intergenic | 30.0% |
| AGTACTTATGATGTTCTCTT+TGG | - | chr6_4:2743124-2743143 | Msa0971080:intron | 30.0% | |
| ACAATAAGTAAGCACGTATA+AGG | - | chr6_4:2743464-2743483 | Msa0971080:intron | 30.0% | |
| !! | TTTGCTATTTCGATACATTG+AGG | - | chr6_4:2743596-2743615 | Msa0971080:intron | 30.0% |
| !! | TTGCTATTTCGATACATTGA+GGG | - | chr6_4:2743597-2743616 | Msa0971080:intron | 30.0% |
| AAGATGCAATTCATAAAACG+GGG | + | chr6_4:2743670-2743689 | None:intergenic | 30.0% | |
| AATGTTCAAGATACACTTCA+AGG | + | chr6_4:2743766-2743785 | None:intergenic | 30.0% | |
| !! | TGCAACTTTTACTCACTTTT+TGG | + | chr6_4:2744156-2744175 | None:intergenic | 30.0% |
| TGAGAATTGTCTGAGAAAAT+TGG | - | chr6_4:2744199-2744218 | Msa0971080:intron | 30.0% | |
| GAGAATTGTCTGAGAAAATT+GGG | - | chr6_4:2744200-2744219 | Msa0971080:intron | 30.0% | |
| ! | CCTTTAATCTCTATCTTTTG+TGG | + | chr6_4:2744512-2744531 | None:intergenic | 30.0% |
| CCACAAAAGATAGAGATTAA+AGG | - | chr6_4:2744509-2744528 | Msa0971080:CDS | 30.0% | |
| ATTGAGCGATGATATCATAA+AGG | - | chr6_4:2744532-2744551 | Msa0971080:intron | 30.0% | |
| ! | AACAATGATAAAAGCATGCT+CGG | + | chr6_4:2744812-2744831 | None:intergenic | 30.0% |
| ATTGTTTGTTCCTGATTGAT+GGG | - | chr6_4:2744826-2744845 | Msa0971080:CDS | 30.0% | |
| TCAAGTGTTACATAAAGTCA+TGG | + | chr6_4:2744917-2744936 | None:intergenic | 30.0% | |
| CTTTATGTAACACTTGATTC+AGG | - | chr6_4:2744920-2744939 | Msa0971080:CDS | 30.0% | |
| TGTGAAGAATGGTGAAGAAA+AGG | + | chr6_4:2738186-2738205 | None:intergenic | 35.0% | |
| ! | GAAGAGGTTTTTGTGAAGAA+TGG | + | chr6_4:2738197-2738216 | None:intergenic | 35.0% |
| CACAAAAACCTCTTCTTCAA+TGG | - | chr6_4:2738202-2738221 | Msa0971080:three_prime_UTR | 35.0% | |
| TGAGAATAAACCGGATAAAG+TGG | + | chr6_4:2738234-2738253 | None:intergenic | 35.0% | |
| !!! | GCTTTAAGACCTTTTTCAAG+AGG | + | chr6_4:2738392-2738411 | None:intergenic | 35.0% |
| TGCTTCGTCATATGCTAAAA+AGG | - | chr6_4:2738427-2738446 | Msa0971080:exon | 35.0% | |
| CGTAAGTAGAACTCAAATTG+CGG | - | chr6_4:2738769-2738788 | Msa0971080:CDS | 35.0% | |
| AGAGACAGTTATCCGAAAAA+TGG | - | chr6_4:2738961-2738980 | Msa0971080:intron | 35.0% | |
| GAGACGATTAATATGATCAG+TGG | - | chr6_4:2739192-2739211 | Msa0971080:CDS | 35.0% | |
| TTTGAGTGTCCAAAACATGT+CGG | + | chr6_4:2739508-2739527 | None:intergenic | 35.0% | |
| GCATTAGCACTTCATATTGA+AGG | + | chr6_4:2739646-2739665 | None:intergenic | 35.0% | |
| CTTTACATGAGTCTGTATCA+TGG | - | chr6_4:2739854-2739873 | Msa0971080:intron | 35.0% | |
| TTACATGAGTCTGTATCATG+GGG | - | chr6_4:2739856-2739875 | Msa0971080:intron | 35.0% | |
| ! | ATGTCCGTATTTTCAAACTC+TGG | - | chr6_4:2740006-2740025 | Msa0971080:intron | 35.0% |
| AACAGAAGACTAACTCTATC+TGG | - | chr6_4:2740135-2740154 | Msa0971080:intron | 35.0% | |
| ATTTGATAGGCAGTATGGAA+AGG | + | chr6_4:2740201-2740220 | None:intergenic | 35.0% | |
| ACACAAAATACACACAGAAC+AGG | + | chr6_4:2740454-2740473 | None:intergenic | 35.0% | |
| AAGAAAACCAACTGATAAGC+TGG | + | chr6_4:2740486-2740505 | None:intergenic | 35.0% | |
| !!! | AGCTTATCAGTTGGTTTTCT+TGG | - | chr6_4:2740485-2740504 | Msa0971080:intron | 35.0% |
| TTTCTTGGCAGGAAAAACAA+AGG | - | chr6_4:2740500-2740519 | Msa0971080:intron | 35.0% | |
| !! | TTTTGTTTGTGCCTGATGTT+GGG | + | chr6_4:2740554-2740573 | None:intergenic | 35.0% |
| !! | ATTTTGTTTGTGCCTGATGT+TGG | + | chr6_4:2740555-2740574 | None:intergenic | 35.0% |
| ATCTCAGATGGCTAAATATG+AGG | - | chr6_4:2740573-2740592 | Msa0971080:intron | 35.0% | |
| ! | CTTGCAATTTTACAAGCTCT+TGG | + | chr6_4:2740739-2740758 | None:intergenic | 35.0% |
| AGAAGATTCATCAATCAGAC+TGG | - | chr6_4:2740757-2740776 | Msa0971080:intron | 35.0% | |
| TTTACCTCCAATATGGTCAA+AGG | + | chr6_4:2741002-2741021 | None:intergenic | 35.0% | |
| ! | CGAATTCACGATGATTTTTG+TGG | - | chr6_4:2741121-2741140 | Msa0971080:intron | 35.0% |
| ! | ACTCAATTATCTTTTGCAGG+GGG | - | chr6_4:2741356-2741375 | Msa0971080:CDS | 35.0% |
| !! | AATAAGTTGGTCGTAACAGT+TGG | - | chr6_4:2741404-2741423 | Msa0971080:CDS | 35.0% |
| GTAGCTCATTCCAAACTTTA+TGG | + | chr6_4:2741480-2741499 | None:intergenic | 35.0% | |
| !!! | GGTTGAGTGTTATTTTTGCA+TGG | - | chr6_4:2741527-2741546 | Msa0971080:intron | 35.0% |
| TTTGACACGTTGACAAAACA+AGG | + | chr6_4:2742113-2742132 | None:intergenic | 35.0% | |
| TGTCAACGTGTCAAATAAGT+AGG | - | chr6_4:2742118-2742137 | Msa0971080:intron | 35.0% | |
| GTCAACGTGTCAAATAAGTA+GGG | - | chr6_4:2742119-2742138 | Msa0971080:intron | 35.0% | |
| GTGTCAAATAAGTAGGGAAT+TGG | - | chr6_4:2742125-2742144 | Msa0971080:intron | 35.0% | |
| GTCAGCCAGAAATTATAAAG+AGG | + | chr6_4:2742243-2742262 | None:intergenic | 35.0% | |
| ! | AATGCCAAGTTCTTTTTCTG+TGG | - | chr6_4:2742355-2742374 | Msa0971080:CDS | 35.0% |
| ! | TGCAGTTATTAGCTTACAAG+TGG | - | chr6_4:2742383-2742402 | Msa0971080:CDS | 35.0% |
| ! | GCAGTTATTAGCTTACAAGT+GGG | - | chr6_4:2742384-2742403 | Msa0971080:CDS | 35.0% |
| !!! | GACTATTTTGACGAACAAAG+TGG | + | chr6_4:2742539-2742558 | None:intergenic | 35.0% |
| !!! | TTCACCATTTTTGGAGTATC+GGG | + | chr6_4:2742596-2742615 | None:intergenic | 35.0% |
| !!! | CTTCACCATTTTTGGAGTAT+CGG | + | chr6_4:2742597-2742616 | None:intergenic | 35.0% |
| TTGAAGGAAAAAAATGACCG+GGG | - | chr6_4:2742778-2742797 | Msa0971080:intron | 35.0% | |
| ! | TAAGACAGAAGTATAGGTGT+CGG | + | chr6_4:2742843-2742862 | None:intergenic | 35.0% |
| AGAGAATAGCTATTGCTATG+TGG | + | chr6_4:2742981-2743000 | None:intergenic | 35.0% | |
| AGAGAATCAATCAGTGGTAA+TGG | + | chr6_4:2743011-2743030 | None:intergenic | 35.0% | |
| CATTAGAGAGAATCAATCAG+TGG | + | chr6_4:2743017-2743036 | None:intergenic | 35.0% | |
| CTTATGATGTTCTCTTTGGA+TGG | - | chr6_4:2743128-2743147 | Msa0971080:intron | 35.0% | |
| TCAAAATTCCCGATACGATA+CGG | + | chr6_4:2743331-2743350 | None:intergenic | 35.0% | |
| ACTAACAAAGTGCACAATCA+GGG | - | chr6_4:2743568-2743587 | Msa0971080:intron | 35.0% | |
| TTCAAGGAGATTTCTCTTGT+AGG | + | chr6_4:2743750-2743769 | None:intergenic | 35.0% | |
| ! | TTGGATTATGCATTGATGAC+TGG | - | chr6_4:2743883-2743902 | Msa0971080:intron | 35.0% |
| AGATACACGAGTTGTTTGAT+TGG | - | chr6_4:2743944-2743963 | Msa0971080:intron | 35.0% | |
| GATACACGAGTTGTTTGATT+GGG | - | chr6_4:2743945-2743964 | Msa0971080:intron | 35.0% | |
| AAAAAGCAGTAAACCCCTAT+TGG | + | chr6_4:2743980-2743999 | None:intergenic | 35.0% | |
| ! | GAAAATTGGGTGAATTTTGC+AGG | - | chr6_4:2744213-2744232 | Msa0971080:intron | 35.0% |
| CAAGGACTATGTCTTTAGAT+TGG | + | chr6_4:2744307-2744326 | None:intergenic | 35.0% | |
| !! | ATTCTAGGACCTCATCAATA+CGG | + | chr6_4:2744376-2744395 | None:intergenic | 35.0% |
| CCTTATAATCTACGACTTCA+CGG | + | chr6_4:2744670-2744689 | None:intergenic | 35.0% | |
| TGTCAGCAATCTTCTAATGT+AGG | - | chr6_4:2744775-2744794 | Msa0971080:CDS | 35.0% | |
| GTCAGCAATCTTCTAATGTA+GGG | - | chr6_4:2744776-2744795 | Msa0971080:CDS | 35.0% | |
| CATTGTTTGTTCCTGATTGA+TGG | - | chr6_4:2744825-2744844 | Msa0971080:CDS | 35.0% | |
| CCATGAATTATCGTGGTTAA+GGG | + | chr6_4:2744980-2744999 | None:intergenic | 35.0% | |
| ! | TGGTGAAGAAAAGGTTCTGA+GGG | + | chr6_4:2738177-2738196 | None:intergenic | 40.0% |
| ATGGTGAAGAAAAGGTTCTG+AGG | + | chr6_4:2738178-2738197 | None:intergenic | 40.0% | |
| ATGGCGAAAACCACTTTATC+CGG | - | chr6_4:2738221-2738240 | Msa0971080:three_prime_UTR | 40.0% | |
| GGTTAAGGCTGAGAATAAAC+CGG | + | chr6_4:2738243-2738262 | None:intergenic | 40.0% | |
| TCCTGAAGATGAAGAAGGAA+TGG | + | chr6_4:2738303-2738322 | None:intergenic | 40.0% | |
| ! | AACCGATTCATCTTCGAAAG+CGG | - | chr6_4:2738322-2738341 | Msa0971080:intron | 40.0% |
| GATCCTGAACCTCTTGAAAA+AGG | - | chr6_4:2738380-2738399 | Msa0971080:intron | 40.0% | |
| !!! | AGACCTTTTTCAAGAGGTTC+AGG | + | chr6_4:2738386-2738405 | None:intergenic | 40.0% |
| TGAAGAAACAAGAGGAGACA+AGG | - | chr6_4:2738650-2738669 | Msa0971080:CDS | 40.0% | |
| TGCAGAGACAATTGATATGC+TGG | - | chr6_4:2739040-2739059 | Msa0971080:intron | 40.0% | |
| TTGTAGCTTGAAGGTTTGTG+TGG | - | chr6_4:2739478-2739497 | Msa0971080:intron | 40.0% | |
| TGTAGCTTGAAGGTTTGTGT+GGG | - | chr6_4:2739479-2739498 | Msa0971080:intron | 40.0% | |
| ! | CTTCATATTGAAGGTGTGTC+TGG | + | chr6_4:2739637-2739656 | None:intergenic | 40.0% |
| GCGTTTCATCTCCCATAATT+AGG | - | chr6_4:2739935-2739954 | Msa0971080:intron | 40.0% | |
| TCCTTAATTCCTTCAAACCC+TGG | - | chr6_4:2740038-2740057 | Msa0971080:intron | 40.0% | |
| TCCAGGGTTTGAAGGAATTA+AGG | + | chr6_4:2740042-2740061 | None:intergenic | 40.0% | |
| ! | TATGAAGCACTTACAGTCCA+GGG | + | chr6_4:2740058-2740077 | None:intergenic | 40.0% |
| ! | TGGTTTTCCAGCTTATCAGT+TGG | - | chr6_4:2740476-2740495 | Msa0971080:intron | 40.0% |
| !!! | TATCAGTTGGTTTTCTTGGC+AGG | - | chr6_4:2740489-2740508 | Msa0971080:intron | 40.0% |
| GGCACAAACAAAATCTCAGA+TGG | - | chr6_4:2740561-2740580 | Msa0971080:intron | 40.0% | |
| GGCTAAATATGAGGATGAGT+TGG | - | chr6_4:2740582-2740601 | Msa0971080:intron | 40.0% | |
| ! | AATATGAGGATGAGTTGGCA+AGG | - | chr6_4:2740587-2740606 | Msa0971080:intron | 40.0% |
| ACTACGAAAGCAAACTGTAG+AGG | - | chr6_4:2740817-2740836 | Msa0971080:CDS | 40.0% | |
| AAAGCAAACTGTAGAGGAGA+AGG | - | chr6_4:2740823-2740842 | Msa0971080:CDS | 40.0% | |
| ACAGCACTTGCAAAAGCAAA+AGG | - | chr6_4:2740875-2740894 | Msa0971080:CDS | 40.0% | |
| CAGCACTTGCAAAAGCAAAA+GGG | - | chr6_4:2740876-2740895 | Msa0971080:CDS | 40.0% | |
| CGAAAAACGAAGAGATTGAC+AGG | - | chr6_4:2740915-2740934 | Msa0971080:intron | 40.0% | |
| AGGAGAAACCAACTTGAGAA+GGG | - | chr6_4:2740935-2740954 | Msa0971080:intron | 40.0% | |
| CTAAATCACCCTTCTCAAGT+TGG | + | chr6_4:2740946-2740965 | None:intergenic | 40.0% | |
| ACTACCTTTGACCATATTGG+AGG | - | chr6_4:2740995-2741014 | Msa0971080:intron | 40.0% | |
| ! | GAGTTTTCAGATTTGGGGAT+TGG | + | chr6_4:2741340-2741359 | None:intergenic | 40.0% |
| GGAATGAGCTACTATAAACG+AGG | - | chr6_4:2741488-2741507 | Msa0971080:intron | 40.0% | |
| TGAGCTACTATAAACGAGGA+AGG | - | chr6_4:2741492-2741511 | Msa0971080:intron | 40.0% | |
| CTACTATAAACGAGGAAGGA+GGG | - | chr6_4:2741496-2741515 | Msa0971080:intron | 40.0% | |
| GATTGTACCTAATGTAGGGA+AGG | - | chr6_4:2741674-2741693 | Msa0971080:intron | 40.0% | |
| TGGTTTAGCAAGTCGAGAAA+GGG | + | chr6_4:2741813-2741832 | None:intergenic | 40.0% | |
| TAGTAAGAGAATTGAGCAGC+TGG | - | chr6_4:2741889-2741908 | Msa0971080:intron | 40.0% | |
| ! | CAGAGAGTTGGCTTACAAAT+CGG | - | chr6_4:2742003-2742022 | Msa0971080:intron | 40.0% |
| !! | TAATTTCTGGCTGACAGTCT+AGG | - | chr6_4:2742248-2742267 | Msa0971080:CDS | 40.0% |
| !! | AATTTCTGGCTGACAGTCTA+GGG | - | chr6_4:2742249-2742268 | Msa0971080:CDS | 40.0% |
| AACAGCAATAACCAGAAGCA+TGG | + | chr6_4:2742419-2742438 | None:intergenic | 40.0% | |
| ! | GACTACTTGCTACACATTCA+GGG | + | chr6_4:2742469-2742488 | None:intergenic | 40.0% |
| ! | TGACTACTTGCTACACATTC+AGG | + | chr6_4:2742470-2742489 | None:intergenic | 40.0% |
| ! | TGGACAATCAGGGACTATTT+TGG | + | chr6_4:2742519-2742538 | None:intergenic | 40.0% |
| ACGAACAAAGTGGACAATCA+GGG | + | chr6_4:2742529-2742548 | None:intergenic | 40.0% | |
| !!! | TCACCATTTTTGGAGTATCG+GGG | + | chr6_4:2742595-2742614 | None:intergenic | 40.0% |
| ! | TATCGGTATCGGATATGTGT+CGG | + | chr6_4:2742628-2742647 | None:intergenic | 40.0% |
| ! | TACTTTTCCGATACGCGTAT+CGG | + | chr6_4:2742655-2742674 | None:intergenic | 40.0% |
| ! | TACGCGTATCGGAAAAGTAT+CGG | - | chr6_4:2742656-2742675 | Msa0971080:intron | 40.0% |
| GTACAAATTAGTCGTATCCC+CGG | + | chr6_4:2742798-2742817 | None:intergenic | 40.0% | |
| GGAGTATAAGTAAGCTGTGT+CGG | + | chr6_4:2742822-2742841 | None:intergenic | 40.0% | |
| GATACGATACGATACCGATA+CGG | + | chr6_4:2743370-2743389 | None:intergenic | 40.0% | |
| ! | GTATCGGTATCGTATCGTAT+CGG | - | chr6_4:2743369-2743388 | Msa0971080:intron | 40.0% |
| GACTAACAAAGTGCACAATC+AGG | - | chr6_4:2743567-2743586 | Msa0971080:intron | 40.0% | |
| AAACGGGGAAATAGTCACTT+TGG | + | chr6_4:2743655-2743674 | None:intergenic | 40.0% | |
| ! | GATTATGCATTGATGACTGG+AGG | - | chr6_4:2743886-2743905 | Msa0971080:intron | 40.0% |
| TAAACCCCTATTGGACTTCT+TGG | + | chr6_4:2743971-2743990 | None:intergenic | 40.0% | |
| ! | AATTGGGTGAATTTTGCAGG+CGG | - | chr6_4:2744216-2744235 | Msa0971080:intron | 40.0% |
| CTTGAGCTATGTACTTGTCT+AGG | + | chr6_4:2744445-2744464 | None:intergenic | 40.0% | |
| CAAGCTGGATCAAGAAAATC+TGG | - | chr6_4:2744461-2744480 | Msa0971080:CDS | 40.0% | |
| AAGGGAAATAGCGAAACTGA+TGG | - | chr6_4:2744586-2744605 | Msa0971080:intron | 40.0% | |
| CCGTGAAGTCGTAGATTATA+AGG | - | chr6_4:2744667-2744686 | Msa0971080:intron | 40.0% | |
| TAAAGCTTAGTTAGTGCACG+AGG | - | chr6_4:2744730-2744749 | Msa0971080:CDS | 40.0% | |
| CCAAAATCTTCCCATCAATC+AGG | + | chr6_4:2744839-2744858 | None:intergenic | 40.0% | |
| ! | CCTGATTGATGGGAAGATTT+TGG | - | chr6_4:2744836-2744855 | Msa0971080:CDS | 40.0% |
| ! | GGTTTTCGCCATTGAAGAAG+AGG | + | chr6_4:2738213-2738232 | None:intergenic | 45.0% |
| GCCATTCCTTCTTCATCTTC+AGG | - | chr6_4:2738299-2738318 | Msa0971080:three_prime_UTR | 45.0% | |
| TCGGTTCCTGAAGATGAAGA+AGG | + | chr6_4:2738308-2738327 | None:intergenic | 45.0% | |
| ! | ACCGATTCATCTTCGAAAGC+GGG | - | chr6_4:2738323-2738342 | Msa0971080:intron | 45.0% |
| ACCCGCTTTCGAAGATGAAT+CGG | + | chr6_4:2738327-2738346 | None:intergenic | 45.0% | |
| AAGCGGGTAACGATAATCCA+AGG | - | chr6_4:2738339-2738358 | Msa0971080:intron | 45.0% | |
| !! | AATCCAAGGAGTGCTTCTTC+TGG | - | chr6_4:2738353-2738372 | Msa0971080:intron | 45.0% |
| !! | AATCCAGAAGAAGCACTCCT+TGG | + | chr6_4:2738359-2738378 | None:intergenic | 45.0% |
| CGGAGACATTTGATATGTCG+AGG | - | chr6_4:2738789-2738808 | Msa0971080:CDS | 45.0% | |
| AGTAGTGTGCGTGTGAGTTT+CGG | - | chr6_4:2739240-2739259 | Msa0971080:CDS | 45.0% | |
| ! | GGTGTATGCTTTTCTGTGTC+GGG | + | chr6_4:2739541-2739560 | None:intergenic | 45.0% |
| ! | CGGTGTATGCTTTTCTGTGT+CGG | + | chr6_4:2739542-2739561 | None:intergenic | 45.0% |
| TTTCCTCAGCGTGTTGAAGA+CGG | - | chr6_4:2739726-2739745 | Msa0971080:intron | 45.0% | |
| TGAAACGCATACACCCCAAT+GGG | + | chr6_4:2739923-2739942 | None:intergenic | 45.0% | |
| ATGAAACGCATACACCCCAA+TGG | + | chr6_4:2739924-2739943 | None:intergenic | 45.0% | |
| ACTTACAGTCCAGGGTTTGA+AGG | + | chr6_4:2740050-2740069 | None:intergenic | 45.0% | |
| ! | CTATGAAGCACTTACAGTCC+AGG | + | chr6_4:2740059-2740078 | None:intergenic | 45.0% |
| GTAAGTGCTTCATAGCAGAC+AGG | - | chr6_4:2740064-2740083 | Msa0971080:intron | 45.0% | |
| ! | CAAGCCTTTTCCCACTAAGT+GGG | - | chr6_4:2740262-2740281 | Msa0971080:intron | 45.0% |
| ! | AAGCCTTTTCCCACTAAGTG+GGG | - | chr6_4:2740263-2740282 | Msa0971080:intron | 45.0% |
| AAAAAAGCTGGCCCAACATC+AGG | - | chr6_4:2740540-2740559 | Msa0971080:intron | 45.0% | |
| GCTCTTGGTTCCTTACTCTA+TGG | + | chr6_4:2740724-2740743 | None:intergenic | 45.0% | |
| CAGGAGAAACCAACTTGAGA+AGG | - | chr6_4:2740934-2740953 | Msa0971080:intron | 45.0% | |
| ! | TTCAGATTTGGGGATTGGTG+TGG | + | chr6_4:2741335-2741354 | None:intergenic | 45.0% |
| ! | AAGTTGGTCGTAACAGTTGG+TGG | - | chr6_4:2741407-2741426 | Msa0971080:CDS | 45.0% |
| ! | ATACCTTGTTGTGTAGACCC+CGG | + | chr6_4:2741450-2741469 | None:intergenic | 45.0% |
| GCTACTATAAACGAGGAAGG+AGG | - | chr6_4:2741495-2741514 | Msa0971080:intron | 45.0% | |
| CGAGGAAGGAGGGAAAAAAT+TGG | - | chr6_4:2741506-2741525 | Msa0971080:intron | 45.0% | |
| !!! | AAGTCGAGAAAGGGTGCTTT+TGG | + | chr6_4:2741804-2741823 | None:intergenic | 45.0% |
| CTGGTTTAGCAAGTCGAGAA+AGG | + | chr6_4:2741814-2741833 | None:intergenic | 45.0% | |
| CGATTTGTAAGCCAACTCTC+TGG | + | chr6_4:2742005-2742024 | None:intergenic | 45.0% | |
| GGTATTCAGTACCATGCTTC+TGG | - | chr6_4:2742405-2742424 | Msa0971080:CDS | 45.0% | |
| GACGAACAAAGTGGACAATC+AGG | + | chr6_4:2742530-2742549 | None:intergenic | 45.0% | |
| ATCGGGGCTTCAGAGATTAA+GGG | + | chr6_4:2742579-2742598 | None:intergenic | 45.0% | |
| TATCGGGGCTTCAGAGATTA+AGG | + | chr6_4:2742580-2742599 | None:intergenic | 45.0% | |
| AAGCCCCGATACTCCAAAAA+TGG | - | chr6_4:2742589-2742608 | Msa0971080:CDS | 45.0% | |
| ! | ACTTTTCCGATACGCGTATC+GGG | + | chr6_4:2742654-2742673 | None:intergenic | 45.0% |
| !! | ACGCGTATCGGAAAAGTATC+GGG | - | chr6_4:2742657-2742676 | Msa0971080:intron | 45.0% |
| AAACAATGACCGATACGCGT+CGG | - | chr6_4:2742703-2742722 | Msa0971080:intron | 45.0% | |
| TACTTCTCCGATACGCGTAT+CGG | + | chr6_4:2742736-2742755 | None:intergenic | 45.0% | |
| ! | TACGCGTATCGGAGAAGTAT+CGG | - | chr6_4:2742737-2742756 | Msa0971080:intron | 45.0% |
| ! | TTTTTCCCGTATCGCCGTAT+CGG | - | chr6_4:2743353-2743372 | Msa0971080:intron | 45.0% |
| ! | TATCGTATCGGTATCGTGTC+AGG | - | chr6_4:2743381-2743400 | Msa0971080:intron | 45.0% |
| ATCGGTATCGTGTCAGGTAT+CGG | - | chr6_4:2743387-2743406 | Msa0971080:intron | 45.0% | |
| GACTACTCGTCACTCATTCA+AGG | - | chr6_4:2743628-2743647 | Msa0971080:intron | 45.0% | |
| ATTGGGCCAAGAAGTCCAAT+AGG | - | chr6_4:2743962-2743981 | Msa0971080:intron | 45.0% | |
| TTGGGCCAAGAAGTCCAATA+GGG | - | chr6_4:2743963-2743982 | Msa0971080:intron | 45.0% | |
| !! | ATTATCCGACTCGGTTCTTG+TGG | - | chr6_4:2744068-2744087 | Msa0971080:intron | 45.0% |
| AATGCCCTTCTCTTTCGTAC+TGG | - | chr6_4:2744278-2744297 | Msa0971080:intron | 45.0% | |
| GTCACCAGTACGAAAGAGAA+GGG | + | chr6_4:2744285-2744304 | None:intergenic | 45.0% | |
| ! | TGTAGCAGACCGTATTGATG+AGG | - | chr6_4:2744364-2744383 | Msa0971080:intron | 45.0% |
| TCCTAGAATTTCCCTTGCCT+GGG | - | chr6_4:2744387-2744406 | Msa0971080:intron | 45.0% | |
| GACAAGTACATAGCTCAAGC+TGG | - | chr6_4:2744446-2744465 | Msa0971080:CDS | 45.0% | |
| !!! | AAACCCATCGGTTTTAGCTG+CGG | + | chr6_4:2744561-2744580 | None:intergenic | 45.0% |
| !! | GCTAAAACCGATGGGTTTTC+CGG | - | chr6_4:2744563-2744582 | Msa0971080:intron | 45.0% |
| ! | CAGTTTCGCTATTTCCCTTC+CGG | + | chr6_4:2744585-2744604 | None:intergenic | 45.0% |
| ! | ACAGTTGTCGCTTCCATACA+CGG | + | chr6_4:2744627-2744646 | None:intergenic | 45.0% |
| GCAATCTTCTAATGTAGGGC+TGG | - | chr6_4:2744780-2744799 | Msa0971080:CDS | 45.0% | |
| !!! | TTTATTTTACTTTTTTTTAA+AGG | + | chr6_4:2742873-2742892 | None:intergenic | 5.0% |
| TGAAGAAGGAATGGCGCCAT+CGG | + | chr6_4:2738294-2738313 | None:intergenic | 50.0% | |
| GGAGACAAGGCAAGCTGAAT+TGG | - | chr6_4:2738663-2738682 | Msa0971080:CDS | 50.0% | |
| GCAAGCTGAATTGGCTGCTA+AGG | - | chr6_4:2738672-2738691 | Msa0971080:CDS | 50.0% | |
| ! | TGTGGGTGTCCGACATGTTT+TGG | - | chr6_4:2739496-2739515 | Msa0971080:intron | 50.0% |
| TGTCCGACTCATGCCATTGT+CGG | - | chr6_4:2739608-2739627 | Msa0971080:intron | 50.0% | |
| TGTCCGACAATGGCATGAGT+CGG | + | chr6_4:2739614-2739633 | None:intergenic | 50.0% | |
| TTCCTCAGCGTGTTGAAGAC+GGG | - | chr6_4:2739727-2739746 | Msa0971080:intron | 50.0% | |
| CCACTTAGTGGGAAAAGGCT+TGG | + | chr6_4:2740264-2740283 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCCACTAAG+TGG | - | chr6_4:2740261-2740280 | Msa0971080:intron | 50.0% |
| CAACCCCACTTAGTGGGAAA+AGG | + | chr6_4:2740269-2740288 | None:intergenic | 50.0% | |
| ! | CTTTTCCCACTAAGTGGGGT+TGG | - | chr6_4:2740267-2740286 | Msa0971080:intron | 50.0% |
| ! | AGGATGAGTTGGCAAGGAAG+AGG | - | chr6_4:2740593-2740612 | Msa0971080:intron | 50.0% |
| ! | CCTAATGTAGGGAAGGTGCA+CGG | - | chr6_4:2741681-2741700 | Msa0971080:intron | 50.0% |
| ! | CTAATGTAGGGAAGGTGCAC+GGG | - | chr6_4:2741682-2741701 | Msa0971080:intron | 50.0% |
| ! | GGAAGGTGCACGGGTTATTT+GGG | - | chr6_4:2741691-2741710 | Msa0971080:intron | 50.0% |
| ! | GAAGGTGCACGGGTTATTTG+GGG | - | chr6_4:2741692-2741711 | Msa0971080:intron | 50.0% |
| GAGGACTCTCGGATCAATGA+TGG | + | chr6_4:2741743-2741762 | None:intergenic | 50.0% | |
| ! | ATTTCCCTCTGGAGGACTCT+CGG | + | chr6_4:2741754-2741773 | None:intergenic | 50.0% |
| !!! | GTGCTTTTTTATGGCCCTCC+AGG | - | chr6_4:2741959-2741978 | Msa0971080:intron | 50.0% |
| ! | TTTTATGGCCCTCCAGGAAC+AGG | - | chr6_4:2741965-2741984 | Msa0971080:intron | 50.0% |
| TTTATGGCCCTCCAGGAACA+GGG | - | chr6_4:2741966-2741985 | Msa0971080:intron | 50.0% | |
| TTGTCTTCCCTGTTCCTGGA+GGG | + | chr6_4:2741976-2741995 | None:intergenic | 50.0% | |
| ATTGTCTTCCCTGTTCCTGG+AGG | + | chr6_4:2741977-2741996 | None:intergenic | 50.0% | |
| TCCAGGAACAGGGAAGACAA+TGG | - | chr6_4:2741976-2741995 | Msa0971080:intron | 50.0% | |
| TCGGGGCTTCAGAGATTAAG+GGG | + | chr6_4:2742578-2742597 | None:intergenic | 50.0% | |
| ! | CTTTTCCGATACGCGTATCG+GGG | + | chr6_4:2742653-2742672 | None:intergenic | 50.0% |
| ATACGTCCCGATACGCGTAT+CGG | - | chr6_4:2742726-2742745 | Msa0971080:intron | 50.0% | |
| ACTTCTCCGATACGCGTATC+GGG | + | chr6_4:2742735-2742754 | None:intergenic | 50.0% | |
| !! | ACGCGTATCGGAGAAGTATC+GGG | - | chr6_4:2742738-2742757 | Msa0971080:intron | 50.0% |
| GTATCGAGGCCGTATCGTAT+CGG | - | chr6_4:2743319-2743338 | Msa0971080:intron | 50.0% | |
| TATCGAGGCCGTATCGTATC+GGG | - | chr6_4:2743320-2743339 | Msa0971080:intron | 50.0% | |
| ACGATACCGATACGGCGATA+CGG | + | chr6_4:2743362-2743381 | None:intergenic | 50.0% | |
| TCGGTATCGTGTCAGGTATC+GGG | - | chr6_4:2743388-2743407 | Msa0971080:intron | 50.0% | |
| TGGGCCAAGAAGTCCAATAG+GGG | - | chr6_4:2743964-2743983 | Msa0971080:intron | 50.0% | |
| TGATGCCACAAGAACCGAGT+CGG | + | chr6_4:2744076-2744095 | None:intergenic | 50.0% | |
| GGTCACCAGTACGAAAGAGA+AGG | + | chr6_4:2744286-2744305 | None:intergenic | 50.0% | |
| CTGAATCAAGGTCACCAGGA+CGG | + | chr6_4:2744343-2744362 | None:intergenic | 50.0% | |
| ACAGCTGAATCAAGGTCACC+AGG | + | chr6_4:2744347-2744366 | None:intergenic | 50.0% | |
| GGTCTGCTACAGCTGAATCA+AGG | + | chr6_4:2744355-2744374 | None:intergenic | 50.0% | |
| GTCCTAGAATTTCCCTTGCC+TGG | - | chr6_4:2744386-2744405 | Msa0971080:intron | 50.0% | |
| CCTAGAATTTCCCTTGCCTG+GGG | - | chr6_4:2744388-2744407 | Msa0971080:intron | 50.0% | |
| TTAAAACGCTCCTCTTCCCC+AGG | + | chr6_4:2744407-2744426 | None:intergenic | 50.0% | |
| AAGCCGCAGCTAAAACCGAT+GGG | - | chr6_4:2744555-2744574 | Msa0971080:intron | 50.0% | |
| !! | AAACCGATGGGTTTTCCGGA+AGG | - | chr6_4:2744567-2744586 | Msa0971080:intron | 50.0% |
| !! | AACCGATGGGTTTTCCGGAA+GGG | - | chr6_4:2744568-2744587 | Msa0971080:intron | 50.0% |
| TTCCCTTCCGGAAAACCCAT+CGG | + | chr6_4:2744573-2744592 | None:intergenic | 50.0% | |
| ATCGGAGAAAGAGACGGTGG+CGG | + | chr6_4:2738276-2738295 | None:intergenic | 55.0% | |
| TGCGTGTGAGTTTCGGCCTT+CGG | - | chr6_4:2739247-2739266 | Msa0971080:CDS | 55.0% | |
| TTCAAAGAGCCAAGCCCCGA+AGG | + | chr6_4:2739266-2739285 | None:intergenic | 55.0% | |
| GTGTGTCTGGTGTCCGACAA+TGG | + | chr6_4:2739624-2739643 | None:intergenic | 55.0% | |
| TCCTCAGCGTGTTGAAGACG+GGG | - | chr6_4:2739728-2739747 | Msa0971080:intron | 55.0% | |
| GGTAGCCAACCCCACTTAGT+GGG | + | chr6_4:2740275-2740294 | None:intergenic | 55.0% | |
| AGGTAGCCAACCCCACTTAG+TGG | + | chr6_4:2740276-2740295 | None:intergenic | 55.0% | |
| GTTGGCAAGGAAGAGGATGC+AGG | - | chr6_4:2740600-2740619 | Msa0971080:intron | 55.0% | |
| !! | AGTTGGTGGAGTGACTGCTC+TGG | - | chr6_4:2741421-2741440 | Msa0971080:CDS | 55.0% |
| CCGTGCACCTTCCCTACATT+AGG | + | chr6_4:2741684-2741703 | None:intergenic | 55.0% | |
| ! | GGGAAGGTGCACGGGTTATT+TGG | - | chr6_4:2741690-2741709 | Msa0971080:intron | 55.0% |
| TTGATCCGAGAGTCCTCCAG+AGG | - | chr6_4:2741746-2741765 | Msa0971080:CDS | 55.0% | |
| TGATCCGAGAGTCCTCCAGA+GGG | - | chr6_4:2741747-2741766 | Msa0971080:CDS | 55.0% | |
| !! | AGACCAGGGGTATTTCCCTC+TGG | + | chr6_4:2741765-2741784 | None:intergenic | 55.0% |
| AGAGGGAAATACCCCTGGTC+TGG | - | chr6_4:2741764-2741783 | Msa0971080:CDS | 55.0% | |
| GAGAAAACGTGCCAGACCAG+GGG | + | chr6_4:2741778-2741797 | None:intergenic | 55.0% | |
| CGAGAAAACGTGCCAGACCA+GGG | + | chr6_4:2741779-2741798 | None:intergenic | 55.0% | |
| TCGAGAAAACGTGCCAGACC+AGG | + | chr6_4:2741780-2741799 | None:intergenic | 55.0% | |
| GCCATTGTCTTCCCTGTTCC+TGG | + | chr6_4:2741980-2741999 | None:intergenic | 55.0% | |
| GACAATGGCTGCCAGAGAGT+TGG | - | chr6_4:2741991-2742010 | Msa0971080:intron | 55.0% | |
| ! | GTATCGGGGCGTATCGGTAT+CGG | + | chr6_4:2742639-2742658 | None:intergenic | 55.0% |
| ATACGCGTATCGGGGCGTAT+CGG | + | chr6_4:2742645-2742664 | None:intergenic | 55.0% | |
| ATACGCCCCGATACGCGTAT+CGG | - | chr6_4:2742645-2742664 | Msa0971080:intron | 55.0% | |
| CGATACCGATACGGCGATAC+GGG | + | chr6_4:2743361-2743380 | None:intergenic | 55.0% | |
| ! | CGGTATCGTGTCAGGTATCG+GGG | - | chr6_4:2743389-2743408 | Msa0971080:intron | 55.0% |
| GGAGGAGATGTTGCTCCACT+CGG | - | chr6_4:2743904-2743923 | Msa0971080:intron | 55.0% | |
| TGTTGCTCCACTCGGATCAC+AGG | - | chr6_4:2743912-2743931 | Msa0971080:intron | 55.0% | |
| GTTACAGCCTGTGATCCGAG+TGG | + | chr6_4:2743922-2743941 | None:intergenic | 55.0% | |
| CCCCAGGCAAGGGAAATTCT+AGG | + | chr6_4:2744391-2744410 | None:intergenic | 55.0% | |
| ATTTCCCTTGCCTGGGGAAG+AGG | - | chr6_4:2744394-2744413 | Msa0971080:intron | 55.0% | |
| GAAGCCGCAGCTAAAACCGA+TGG | - | chr6_4:2744554-2744573 | Msa0971080:intron | 55.0% | |
| AGTGTCCAAGCTGCCGTGTA+TGG | - | chr6_4:2744611-2744630 | Msa0971080:intron | 55.0% | |
| CACGGAACAAGCTTGCGTCA+AGG | + | chr6_4:2744652-2744671 | None:intergenic | 55.0% | |
| GCCACCGTCTCTTTCTCCGA+TGG | - | chr6_4:2738275-2738294 | Msa0971080:three_prime_UTR | 60.0% | |
| GCCATCGGAGAAAGAGACGG+TGG | + | chr6_4:2738279-2738298 | None:intergenic | 60.0% | |
| GGCGCCATCGGAGAAAGAGA+CGG | + | chr6_4:2738282-2738301 | None:intergenic | 60.0% | |
| GCGTGTGAGTTTCGGCCTTC+GGG | - | chr6_4:2739248-2739267 | Msa0971080:CDS | 60.0% | |
| CGTGTGAGTTTCGGCCTTCG+GGG | - | chr6_4:2739249-2739268 | Msa0971080:CDS | 60.0% | |
| CAGCCGGGGTCTACACAACA+AGG | - | chr6_4:2741444-2741463 | Msa0971080:CDS | 60.0% | |
| !! | CCAGGGGTATTTCCCTCTGG+AGG | + | chr6_4:2741762-2741781 | None:intergenic | 60.0% |
| CCTCCAGAGGGAAATACCCC+TGG | - | chr6_4:2741759-2741778 | Msa0971080:CDS | 60.0% | |
| GGGACGTATCCGACGCGTAT+CGG | + | chr6_4:2742715-2742734 | None:intergenic | 60.0% | |
| ACCAGGACGGTTCGTCGCAA+GGG | + | chr6_4:2744330-2744349 | None:intergenic | 60.0% | |
| CGCTTCCATACACGGCAGCT+TGG | + | chr6_4:2744619-2744638 | None:intergenic | 60.0% | |
| ! | GAAAGAGACGGTGGCGGTGG+TGG | + | chr6_4:2738270-2738289 | None:intergenic | 65.0% |
| ! | GGAGAAAGAGACGGTGGCGG+TGG | + | chr6_4:2738273-2738292 | None:intergenic | 65.0% |
| GAGTTTCGGCCTTCGGGGCT+TGG | - | chr6_4:2739254-2739273 | Msa0971080:CDS | 65.0% | |
| GCCCCGTCTTCAACACGCTG+AGG | + | chr6_4:2739732-2739751 | None:intergenic | 65.0% | |
| GGAGTGACTGCTCTGGCAGC+CGG | - | chr6_4:2741428-2741447 | Msa0971080:CDS | 65.0% | |
| GAGTGACTGCTCTGGCAGCC+GGG | - | chr6_4:2741429-2741448 | Msa0971080:CDS | 65.0% | |
| AGTGACTGCTCTGGCAGCCG+GGG | - | chr6_4:2741430-2741449 | Msa0971080:CDS | 65.0% | |
| GACGGTTCGTCGCAAGGGCA+AGG | + | chr6_4:2744325-2744344 | None:intergenic | 65.0% | |
| CACCAGGACGGTTCGTCGCA+AGG | + | chr6_4:2744331-2744350 | None:intergenic | 65.0% | |
| CGCTCCTCTTCCCCAGGCAA+GGG | + | chr6_4:2744401-2744420 | None:intergenic | 65.0% | |
| ACGCTCCTCTTCCCCAGGCA+AGG | + | chr6_4:2744402-2744421 | None:intergenic | 65.0% | |
| ! | AGAGACGGTGGCGGTGGTGG+CGG | + | chr6_4:2738267-2738286 | None:intergenic | 70.0% |
| GCCCTTGCGACGAACCGTCC+TGG | - | chr6_4:2744326-2744345 | Msa0971080:intron | 70.0% | |
| !! | GGCGGTGGTGGCGGCGGTTA+AGG | + | chr6_4:2738258-2738277 | None:intergenic | 75.0% |
| !!! | GACGGTGGCGGTGGTGGCGG+CGG | + | chr6_4:2738264-2738283 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 2738170 | 2744999 | 2738170 | ID=Msa0971080;Name=Msa0971080 |
| chr6_4 | mRNA | 2738170 | 2744999 | 2738170 | ID=Msa0971080-mRNA-1;Parent=Msa0971080;Name=Msa0971080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.77|0.9|0.9|0.88|0.8|10|173|654 |
| chr6_4 | exon | 2738170 | 2738327 | 2738170 | ID=Msa0971080-mRNA-1:exon:1365;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2738415 | 2738934 | 2738415 | ID=Msa0971080-mRNA-1:exon:1364;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2739141 | 2739289 | 2739141 | ID=Msa0971080-mRNA-1:exon:1363;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2740764 | 2740904 | 2740764 | ID=Msa0971080-mRNA-1:exon:1362;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2741145 | 2741478 | 2741145 | ID=Msa0971080-mRNA-1:exon:1361;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2741704 | 2741794 | 2741704 | ID=Msa0971080-mRNA-1:exon:1360;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2742153 | 2742462 | 2742153 | ID=Msa0971080-mRNA-1:exon:1359;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2742548 | 2742658 | 2742548 | ID=Msa0971080-mRNA-1:exon:1358;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2744437 | 2744532 | 2744437 | ID=Msa0971080-mRNA-1:exon:1357;Parent=Msa0971080-mRNA-1 |
| chr6_4 | exon | 2744721 | 2744999 | 2744721 | ID=Msa0971080-mRNA-1:exon:1356;Parent=Msa0971080-mRNA-1 |
| chr6_4 | five_prime_UTR | 2744949 | 2744999 | 2744949 | ID=Msa0971080-mRNA-1:five_prime_utr;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2744721 | 2744948 | 2744721 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2744437 | 2744532 | 2744437 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2742548 | 2742658 | 2742548 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2742153 | 2742462 | 2742153 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2741704 | 2741794 | 2741704 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2741145 | 2741478 | 2741145 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2740764 | 2740904 | 2740764 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2739141 | 2739289 | 2739141 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | CDS | 2738430 | 2738934 | 2738430 | ID=Msa0971080-mRNA-1:cds;Parent=Msa0971080-mRNA-1 |
| chr6_4 | three_prime_UTR | 2738415 | 2738429 | 2738415 | ID=Msa0971080-mRNA-1:three_prime_utr;Parent=Msa0971080-mRNA-1 |
| chr6_4 | three_prime_UTR | 2738170 | 2738327 | 2738170 | ID=Msa0971080-mRNA-1:three_prime_utr;Parent=Msa0971080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
