Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972240 | ACP74154.1 | 99.003 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972240 | sp|P29061|CHIB_TOBAC | 58.571 | 280 | 107 | 8 | 24 | 301 | 22 | 294 | 4.65e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972240 | C3VM17 | 99.003 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0380170 | Msa0972240 | 0.813208 | 2.874710e-51 | -8.615850e-47 |
| Msa0425890 | Msa0972240 | 0.824650 | 7.196446e-54 | -8.615850e-47 |
| Msa0426110 | Msa0972240 | 0.800430 | 1.446922e-48 | -8.615850e-47 |
| Msa0284810 | Msa0972240 | 0.800887 | 1.167348e-48 | -8.615850e-47 |
| Msa0972240 | Msa1050480 | 0.817516 | 3.167373e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972240 | MtrunA17_Chr1g0202241 | 54.762 | 294 | 125 | 6 | 10 | 301 | 9 | 296 | 1.02e-107 | 315 |
| Msa0972240 | MtrunA17_Chr7g0275231 | 55.556 | 297 | 122 | 7 | 10 | 301 | 12 | 303 | 2.62e-104 | 306 |
| Msa0972240 | MtrunA17_Chr5g0418461 | 52.740 | 292 | 129 | 5 | 12 | 301 | 10 | 294 | 6.15e-103 | 303 |
| Msa0972240 | MtrunA17_Chr1g0202231 | 53.199 | 297 | 129 | 6 | 4 | 298 | 7 | 295 | 4.38e-100 | 296 |
| Msa0972240 | MtrunA17_Chr7g0240891 | 50.000 | 292 | 138 | 5 | 12 | 301 | 13 | 298 | 1.18e-96 | 287 |
| Msa0972240 | MtrunA17_Chr7g0274861 | 49.158 | 297 | 126 | 5 | 5 | 301 | 4 | 275 | 1.32e-95 | 283 |
| Msa0972240 | MtrunA17_Chr1g0202281 | 51.418 | 282 | 127 | 5 | 22 | 301 | 37 | 310 | 2.50e-94 | 281 |
| Msa0972240 | MtrunA17_Chr8g0361941 | 49.324 | 296 | 140 | 6 | 10 | 301 | 9 | 298 | 1.44e-92 | 276 |
| Msa0972240 | MtrunA17_Chr1g0202261 | 51.418 | 282 | 129 | 7 | 23 | 301 | 21 | 297 | 1.79e-92 | 276 |
| Msa0972240 | MtrunA17_Chr2g0300141 | 49.296 | 284 | 135 | 7 | 22 | 301 | 22 | 300 | 2.89e-89 | 269 |
| Msa0972240 | MtrunA17_Chr2g0300081 | 47.887 | 284 | 139 | 7 | 22 | 301 | 24 | 302 | 4.71e-87 | 263 |
| Msa0972240 | MtrunA17_Chr6g0459141 | 96.183 | 131 | 5 | 0 | 1 | 131 | 1 | 131 | 1.10e-86 | 259 |
| Msa0972240 | MtrunA17_Chr6g0459141 | 81.081 | 111 | 12 | 2 | 200 | 301 | 121 | 231 | 1.42e-53 | 174 |
| Msa0972240 | MtrunA17_Chr2g0331781 | 45.455 | 308 | 153 | 8 | 5 | 301 | 10 | 313 | 4.07e-84 | 256 |
| Msa0972240 | MtrunA17_Chr2g0300101 | 48.070 | 285 | 138 | 8 | 21 | 301 | 21 | 299 | 3.92e-83 | 253 |
| Msa0972240 | MtrunA17_Chr2g0300051 | 43.662 | 284 | 149 | 7 | 21 | 301 | 21 | 296 | 1.39e-72 | 226 |
| Msa0972240 | MtrunA17_Chr2g0300181 | 38.961 | 308 | 175 | 11 | 1 | 301 | 2 | 303 | 5.12e-63 | 202 |
| Msa0972240 | MtrunA17_Chr2g0300161 | 48.980 | 147 | 71 | 3 | 23 | 168 | 24 | 167 | 1.65e-37 | 131 |
| Msa0972240 | MtrunA17_Chr2g0300151 | 41.176 | 153 | 83 | 2 | 1 | 147 | 1 | 152 | 9.63e-34 | 120 |
| Msa0972240 | MtrunA17_Chr2g0300171 | 50.000 | 116 | 54 | 3 | 189 | 301 | 3 | 117 | 6.93e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972240 | AT5G24090.1 | 49.333 | 300 | 145 | 6 | 4 | 301 | 8 | 302 | 2.78e-94 | 281 |
Find 58 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGCTATCTCTCAAAATT+TGG | 0.160551 | 6_4:-4460901 | None:intergenic |
| CAATTCTATGTCAACTAAAA+AGG | 0.209957 | 6_4:+4461357 | Msa0972240:CDS |
| CAGGAGATCTCGTAATTTAT+TGG | 0.261238 | 6_4:+4460735 | Msa0972240:CDS |
| ATCTCTCAAAATTTGGCAAT+TGG | 0.274795 | 6_4:-4460894 | None:intergenic |
| CAACTAGCTTTAAGAATTCA+TGG | 0.286597 | 6_4:+4461323 | Msa0972240:CDS |
| TTGTCAGAGTAGAGGCATTA+AGG | 0.300844 | 6_4:+4460928 | Msa0972240:CDS |
| GATCTCCTGCATTTGTTGAT+TGG | 0.302680 | 6_4:-4460721 | None:intergenic |
| AATTCACCATCTAGACCTTT+TGG | 0.316226 | 6_4:+4461055 | Msa0972240:CDS |
| ATCAACTTGCTGACTACATT+TGG | 0.318182 | 6_4:+4461014 | Msa0972240:CDS |
| AGGAGATCTCGTAATTTATT+GGG | 0.320382 | 6_4:+4460736 | Msa0972240:CDS |
| TTTCCATTGGTGGTGAATAT+AGG | 0.346539 | 6_4:+4460957 | Msa0972240:CDS |
| ATAGCATTCCTCTCGACATT+TGG | 0.352873 | 6_4:+4460824 | Msa0972240:CDS |
| CATGAATTCTTAAAGCTAGT+TGG | 0.353578 | 6_4:-4461322 | None:intergenic |
| CTTCAAAAGGCAATTAATAC+TGG | 0.354046 | 6_4:+4461232 | Msa0972240:CDS |
| GTTAAGCCTTCACCTAAGTA+TGG | 0.359968 | 6_4:+4461469 | Msa0972240:CDS |
| TTTGGTGATGCTATACTAGA+TGG | 0.378616 | 6_4:+4461073 | Msa0972240:CDS |
| TCAAGATAATATACTTCAAA+AGG | 0.403270 | 6_4:+4461219 | Msa0972240:CDS |
| AGGCGCTTTGATGTGCAATC+TGG | 0.431069 | 6_4:+4461511 | Msa0972240:CDS |
| TCTCTCAAAATTTGGCAATT+GGG | 0.431386 | 6_4:-4460893 | None:intergenic |
| GCATCACCAAAAGGTCTAGA+TGG | 0.447604 | 6_4:-4461061 | None:intergenic |
| TTAGGTGAAGGCTTAACAAT+AGG | 0.450586 | 6_4:-4461463 | None:intergenic |
| AAGGTTATGCTTTCCATTGG+TGG | 0.459465 | 6_4:+4460947 | Msa0972240:CDS |
| CTCAAAATTTGGCAATTGGG+TGG | 0.462072 | 6_4:-4460890 | None:intergenic |
| ATTGAAAGGAGAAGAAGTAA+AGG | 0.473274 | 6_4:-4460680 | None:intergenic |
| TTGAAAGGAGAAGAAGTAAA+GGG | 0.486379 | 6_4:-4460679 | None:intergenic |
| TCAAAATTTGGCAATTGGGT+GGG | 0.495887 | 6_4:-4460889 | None:intergenic |
| ATTAAGGTTATGCTTTCCAT+TGG | 0.497247 | 6_4:+4460944 | Msa0972240:CDS |
| GTGGGTTACAATGACCTGCT+AGG | 0.510490 | 6_4:-4460871 | None:intergenic |
| GCAAGTTGATTAGCATCCTC+TGG | 0.511315 | 6_4:-4461001 | None:intergenic |
| AAGCTCCATCACCATTGTCT+TGG | 0.520789 | 6_4:-4460760 | None:intergenic |
| TTAAAGCAAGTGTTTCATAG+TGG | 0.522210 | 6_4:-4461129 | None:intergenic |
| GTGGTGTGATGCTATGGAAC+AGG | 0.527073 | 6_4:+4461491 | Msa0972240:CDS |
| AGTATGGTGGTGTGATGCTA+TGG | 0.534317 | 6_4:+4461485 | Msa0972240:CDS |
| GGAGCTGCATTAGATGTAGC+AGG | 0.550066 | 6_4:-4461394 | None:intergenic |
| ACAAGGTGAGTGAAATTGAA+AGG | 0.556746 | 6_4:-4460694 | None:intergenic |
| TTGAGAGACACATGCAACAC+TGG | 0.557422 | 6_4:+4460782 | Msa0972240:CDS |
| TTGACATAGAATTGATCCAC+TGG | 0.558667 | 6_4:-4461348 | None:intergenic |
| AAGCAAGTGTTTCATAGTGG+AGG | 0.561982 | 6_4:-4461126 | None:intergenic |
| TTCCTCTCGACATTTGGAAG+TGG | 0.563728 | 6_4:+4460830 | Msa0972240:CDS |
| TCTAGTATAGCATCACCAAA+AGG | 0.573657 | 6_4:-4461070 | None:intergenic |
| CAACCACAGTTAAACCTAGC+AGG | 0.574651 | 6_4:+4460857 | Msa0972240:CDS |
| TGGGGCCAAGACAATGGTGA+TGG | 0.582724 | 6_4:+4460755 | Msa0972240:CDS |
| ATAAATATTTGTCAGAGTAG+AGG | 0.583574 | 6_4:+4460920 | Msa0972240:CDS |
| AGCATCACACCACCATACTT+AGG | 0.588331 | 6_4:-4461481 | None:intergenic |
| ATTTATTGGGGCCAAGACAA+TGG | 0.590739 | 6_4:+4460749 | Msa0972240:CDS |
| GAAACAAAGTTACAAGCACC+AGG | 0.591014 | 6_4:-4461292 | None:intergenic |
| GTTCCTATATTCACCACCAA+TGG | 0.600926 | 6_4:-4460960 | None:intergenic |
| GCTTCCACAAAACCACCACT+TGG | 0.607122 | 6_4:-4461415 | None:intergenic |
| TTAAGAATTCATGGAGCCAG+TGG | 0.613696 | 6_4:+4461332 | Msa0972240:CDS |
| GGAGATCTCGTAATTTATTG+GGG | 0.614535 | 6_4:+4460737 | Msa0972240:CDS |
| TCTAATGCAGCTCCAAGTGG+TGG | 0.633619 | 6_4:+4461403 | Msa0972240:CDS |
| ACACCACCATACTTAGGTGA+AGG | 0.640622 | 6_4:-4461475 | None:intergenic |
| TGATGCTATACTAGATGGAG+TGG | 0.641976 | 6_4:+4461078 | Msa0972240:CDS |
| AAGCCTTCACCTAAGTATGG+TGG | 0.668101 | 6_4:+4461472 | Msa0972240:CDS |
| ACATCTAATGCAGCTCCAAG+TGG | 0.681050 | 6_4:+4461400 | Msa0972240:CDS |
| GACCACTTCCAAATGTCGAG+AGG | 0.688510 | 6_4:-4460832 | None:intergenic |
| TTATCTTGAAAGATACACAA+TGG | 0.689340 | 6_4:-4461205 | None:intergenic |
| TGACCTGCTAGGTTTAACTG+TGG | 0.784209 | 6_4:-4460860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAGATAATATACTTCAAA+AGG | + | chr6_4:4461219-4461238 | Msa0972240:CDS | 20.0% |
| !! | TCAAGATAATATACTTCAAA+AGG | + | chr6_4:4461219-4461238 | Msa0972240:CDS | 20.0% |
| !! | ATTTGTTGATTGGAAAAACA+AGG | - | chr6_4:4460714-4460733 | None:intergenic | 25.0% |
| ! | TTATGCTATCTCTCAAAATT+TGG | - | chr6_4:4460904-4460923 | None:intergenic | 25.0% |
| ! | ATAAATATTTGTCAGAGTAG+AGG | + | chr6_4:4460920-4460939 | Msa0972240:CDS | 25.0% |
| !!! | TACATTTGGAACAACTTTTT+GGG | + | chr6_4:4461028-4461047 | Msa0972240:CDS | 25.0% |
| ! | TTATCTTGAAAGATACACAA+TGG | - | chr6_4:4461208-4461227 | None:intergenic | 25.0% |
| ! | CAATTCTATGTCAACTAAAA+AGG | + | chr6_4:4461357-4461376 | Msa0972240:CDS | 25.0% |
| !! | TCAACTAAAAAGGTTTTTGT+TGG | + | chr6_4:4461367-4461386 | Msa0972240:CDS | 25.0% |
| !!! | TCAAACACTTCTTTTGATTT+GGG | - | chr6_4:4461545-4461564 | None:intergenic | 25.0% |
| !! | ATTTGTTGATTGGAAAAACA+AGG | - | chr6_4:4460714-4460733 | None:intergenic | 25.0% |
| ! | TTATGCTATCTCTCAAAATT+TGG | - | chr6_4:4460904-4460923 | None:intergenic | 25.0% |
| ! | ATAAATATTTGTCAGAGTAG+AGG | + | chr6_4:4460920-4460939 | Msa0972240:CDS | 25.0% |
| !!! | TACATTTGGAACAACTTTTT+GGG | + | chr6_4:4461028-4461047 | Msa0972240:CDS | 25.0% |
| ! | TTATCTTGAAAGATACACAA+TGG | - | chr6_4:4461208-4461227 | None:intergenic | 25.0% |
| ! | CAATTCTATGTCAACTAAAA+AGG | + | chr6_4:4461357-4461376 | Msa0972240:CDS | 25.0% |
| !! | TCAACTAAAAAGGTTTTTGT+TGG | + | chr6_4:4461367-4461386 | Msa0972240:CDS | 25.0% |
| !!! | TCAAACACTTCTTTTGATTT+GGG | - | chr6_4:4461545-4461564 | None:intergenic | 25.0% |
| TTGAAAGGAGAAGAAGTAAA+GGG | - | chr6_4:4460682-4460701 | None:intergenic | 30.0% | |
| ATTGAAAGGAGAAGAAGTAA+AGG | - | chr6_4:4460683-4460702 | None:intergenic | 30.0% | |
| ! | TTTTTCCAATCAACAAATGC+AGG | + | chr6_4:4460716-4460735 | Msa0972240:CDS | 30.0% |
| AGGAGATCTCGTAATTTATT+GGG | + | chr6_4:4460736-4460755 | Msa0972240:CDS | 30.0% | |
| TCTCTCAAAATTTGGCAATT+GGG | - | chr6_4:4460896-4460915 | None:intergenic | 30.0% | |
| ATCTCTCAAAATTTGGCAAT+TGG | - | chr6_4:4460897-4460916 | None:intergenic | 30.0% | |
| ATTAAGGTTATGCTTTCCAT+TGG | + | chr6_4:4460944-4460963 | Msa0972240:CDS | 30.0% | |
| !! | CTACATTTGGAACAACTTTT+TGG | + | chr6_4:4461027-4461046 | Msa0972240:CDS | 30.0% |
| TTAAAGCAAGTGTTTCATAG+TGG | - | chr6_4:4461132-4461151 | None:intergenic | 30.0% | |
| CTTCAAAAGGCAATTAATAC+TGG | + | chr6_4:4461232-4461251 | Msa0972240:CDS | 30.0% | |
| !! | TGGACTTTTTGACTATGTTT+GGG | + | chr6_4:4461252-4461271 | Msa0972240:CDS | 30.0% |
| ! | GTTCAATTTTACAATAGTCC+TGG | + | chr6_4:4461274-4461293 | Msa0972240:CDS | 30.0% |
| CATGAATTCTTAAAGCTAGT+TGG | - | chr6_4:4461325-4461344 | None:intergenic | 30.0% | |
| !! | CAACTAGCTTTAAGAATTCA+TGG | + | chr6_4:4461323-4461342 | Msa0972240:CDS | 30.0% |
| TTGAAAGGAGAAGAAGTAAA+GGG | - | chr6_4:4460682-4460701 | None:intergenic | 30.0% | |
| ATTGAAAGGAGAAGAAGTAA+AGG | - | chr6_4:4460683-4460702 | None:intergenic | 30.0% | |
| ! | TTTTTCCAATCAACAAATGC+AGG | + | chr6_4:4460716-4460735 | Msa0972240:CDS | 30.0% |
| AGGAGATCTCGTAATTTATT+GGG | + | chr6_4:4460736-4460755 | Msa0972240:CDS | 30.0% | |
| TCTCTCAAAATTTGGCAATT+GGG | - | chr6_4:4460896-4460915 | None:intergenic | 30.0% | |
| ATCTCTCAAAATTTGGCAAT+TGG | - | chr6_4:4460897-4460916 | None:intergenic | 30.0% | |
| ATTAAGGTTATGCTTTCCAT+TGG | + | chr6_4:4460944-4460963 | Msa0972240:CDS | 30.0% | |
| !! | CTACATTTGGAACAACTTTT+TGG | + | chr6_4:4461027-4461046 | Msa0972240:CDS | 30.0% |
| TTAAAGCAAGTGTTTCATAG+TGG | - | chr6_4:4461132-4461151 | None:intergenic | 30.0% | |
| CTTCAAAAGGCAATTAATAC+TGG | + | chr6_4:4461232-4461251 | Msa0972240:CDS | 30.0% | |
| !! | TGGACTTTTTGACTATGTTT+GGG | + | chr6_4:4461252-4461271 | Msa0972240:CDS | 30.0% |
| ! | GTTCAATTTTACAATAGTCC+TGG | + | chr6_4:4461274-4461293 | Msa0972240:CDS | 30.0% |
| CATGAATTCTTAAAGCTAGT+TGG | - | chr6_4:4461325-4461344 | None:intergenic | 30.0% | |
| !! | CAACTAGCTTTAAGAATTCA+TGG | + | chr6_4:4461323-4461342 | Msa0972240:CDS | 30.0% |
| ACAAGGTGAGTGAAATTGAA+AGG | - | chr6_4:4460697-4460716 | None:intergenic | 35.0% | |
| CAGGAGATCTCGTAATTTAT+TGG | + | chr6_4:4460735-4460754 | Msa0972240:CDS | 35.0% | |
| GGAGATCTCGTAATTTATTG+GGG | + | chr6_4:4460737-4460756 | Msa0972240:CDS | 35.0% | |
| TCAAAATTTGGCAATTGGGT+GGG | - | chr6_4:4460892-4460911 | None:intergenic | 35.0% | |
| !! | TTTCCATTGGTGGTGAATAT+AGG | + | chr6_4:4460957-4460976 | Msa0972240:CDS | 35.0% |
| !! | ATACTCTTTTTCATCACCAG+AGG | + | chr6_4:4460985-4461004 | Msa0972240:CDS | 35.0% |
| !! | ATCAACTTGCTGACTACATT+TGG | + | chr6_4:4461014-4461033 | Msa0972240:CDS | 35.0% |
| !! | ATTTGGAACAACTTTTTGGG+AGG | + | chr6_4:4461031-4461050 | Msa0972240:CDS | 35.0% |
| ! | AATTCACCATCTAGACCTTT+TGG | + | chr6_4:4461055-4461074 | Msa0972240:CDS | 35.0% |
| TCTAGTATAGCATCACCAAA+AGG | - | chr6_4:4461073-4461092 | None:intergenic | 35.0% | |
| !! | TTTGGTGATGCTATACTAGA+TGG | + | chr6_4:4461073-4461092 | Msa0972240:CDS | 35.0% |
| !! | GGAGTGGATTTTGATATTGA+AGG | + | chr6_4:4461094-4461113 | Msa0972240:CDS | 35.0% |
| !! | GTGGATTTTGATATTGAAGG+AGG | + | chr6_4:4461097-4461116 | Msa0972240:CDS | 35.0% |
| !! | CTGGACTTTTTGACTATGTT+TGG | + | chr6_4:4461251-4461270 | Msa0972240:CDS | 35.0% |
| TTGACATAGAATTGATCCAC+TGG | - | chr6_4:4461351-4461370 | None:intergenic | 35.0% | |
| TTAGGTGAAGGCTTAACAAT+AGG | - | chr6_4:4461466-4461485 | None:intergenic | 35.0% | |
| ACAAGGTGAGTGAAATTGAA+AGG | - | chr6_4:4460697-4460716 | None:intergenic | 35.0% | |
| CAGGAGATCTCGTAATTTAT+TGG | + | chr6_4:4460735-4460754 | Msa0972240:CDS | 35.0% | |
| GGAGATCTCGTAATTTATTG+GGG | + | chr6_4:4460737-4460756 | Msa0972240:CDS | 35.0% | |
| TCAAAATTTGGCAATTGGGT+GGG | - | chr6_4:4460892-4460911 | None:intergenic | 35.0% | |
| !! | TTTCCATTGGTGGTGAATAT+AGG | + | chr6_4:4460957-4460976 | Msa0972240:CDS | 35.0% |
| !! | ATACTCTTTTTCATCACCAG+AGG | + | chr6_4:4460985-4461004 | Msa0972240:CDS | 35.0% |
| !! | ATCAACTTGCTGACTACATT+TGG | + | chr6_4:4461014-4461033 | Msa0972240:CDS | 35.0% |
| !! | ATTTGGAACAACTTTTTGGG+AGG | + | chr6_4:4461031-4461050 | Msa0972240:CDS | 35.0% |
| ! | AATTCACCATCTAGACCTTT+TGG | + | chr6_4:4461055-4461074 | Msa0972240:CDS | 35.0% |
| TCTAGTATAGCATCACCAAA+AGG | - | chr6_4:4461073-4461092 | None:intergenic | 35.0% | |
| !! | TTTGGTGATGCTATACTAGA+TGG | + | chr6_4:4461073-4461092 | Msa0972240:CDS | 35.0% |
| !! | GGAGTGGATTTTGATATTGA+AGG | + | chr6_4:4461094-4461113 | Msa0972240:CDS | 35.0% |
| !! | GTGGATTTTGATATTGAAGG+AGG | + | chr6_4:4461097-4461116 | Msa0972240:CDS | 35.0% |
| !! | CTGGACTTTTTGACTATGTT+TGG | + | chr6_4:4461251-4461270 | Msa0972240:CDS | 35.0% |
| TTGACATAGAATTGATCCAC+TGG | - | chr6_4:4461351-4461370 | None:intergenic | 35.0% | |
| TTAGGTGAAGGCTTAACAAT+AGG | - | chr6_4:4461466-4461485 | None:intergenic | 35.0% | |
| ! | GATCTCCTGCATTTGTTGAT+TGG | - | chr6_4:4460724-4460743 | None:intergenic | 40.0% |
| ATTTATTGGGGCCAAGACAA+TGG | + | chr6_4:4460749-4460768 | Msa0972240:CDS | 40.0% | |
| ATAGCATTCCTCTCGACATT+TGG | + | chr6_4:4460824-4460843 | Msa0972240:CDS | 40.0% | |
| CTCAAAATTTGGCAATTGGG+TGG | - | chr6_4:4460893-4460912 | None:intergenic | 40.0% | |
| !! | TTGTCAGAGTAGAGGCATTA+AGG | + | chr6_4:4460928-4460947 | Msa0972240:CDS | 40.0% |
| AAGGTTATGCTTTCCATTGG+TGG | + | chr6_4:4460947-4460966 | Msa0972240:CDS | 40.0% | |
| GTTCCTATATTCACCACCAA+TGG | - | chr6_4:4460963-4460982 | None:intergenic | 40.0% | |
| TGATGCTATACTAGATGGAG+TGG | + | chr6_4:4461078-4461097 | Msa0972240:CDS | 40.0% | |
| AAGCAAGTGTTTCATAGTGG+AGG | - | chr6_4:4461129-4461148 | None:intergenic | 40.0% | |
| GAAACAAAGTTACAAGCACC+AGG | - | chr6_4:4461295-4461314 | None:intergenic | 40.0% | |
| TTAAGAATTCATGGAGCCAG+TGG | + | chr6_4:4461332-4461351 | Msa0972240:CDS | 40.0% | |
| GTTAAGCCTTCACCTAAGTA+TGG | + | chr6_4:4461469-4461488 | Msa0972240:CDS | 40.0% | |
| ! | GATCTCCTGCATTTGTTGAT+TGG | - | chr6_4:4460724-4460743 | None:intergenic | 40.0% |
| ATTTATTGGGGCCAAGACAA+TGG | + | chr6_4:4460749-4460768 | Msa0972240:CDS | 40.0% | |
| ATAGCATTCCTCTCGACATT+TGG | + | chr6_4:4460824-4460843 | Msa0972240:CDS | 40.0% | |
| CTCAAAATTTGGCAATTGGG+TGG | - | chr6_4:4460893-4460912 | None:intergenic | 40.0% | |
| !! | TTGTCAGAGTAGAGGCATTA+AGG | + | chr6_4:4460928-4460947 | Msa0972240:CDS | 40.0% |
| AAGGTTATGCTTTCCATTGG+TGG | + | chr6_4:4460947-4460966 | Msa0972240:CDS | 40.0% | |
| GTTCCTATATTCACCACCAA+TGG | - | chr6_4:4460963-4460982 | None:intergenic | 40.0% | |
| TGATGCTATACTAGATGGAG+TGG | + | chr6_4:4461078-4461097 | Msa0972240:CDS | 40.0% | |
| AAGCAAGTGTTTCATAGTGG+AGG | - | chr6_4:4461129-4461148 | None:intergenic | 40.0% | |
| GAAACAAAGTTACAAGCACC+AGG | - | chr6_4:4461295-4461314 | None:intergenic | 40.0% | |
| TTAAGAATTCATGGAGCCAG+TGG | + | chr6_4:4461332-4461351 | Msa0972240:CDS | 40.0% | |
| GTTAAGCCTTCACCTAAGTA+TGG | + | chr6_4:4461469-4461488 | Msa0972240:CDS | 40.0% | |
| AAGCTCCATCACCATTGTCT+TGG | - | chr6_4:4460763-4460782 | None:intergenic | 45.0% | |
| TTGAGAGACACATGCAACAC+TGG | + | chr6_4:4460782-4460801 | Msa0972240:CDS | 45.0% | |
| TTCCTCTCGACATTTGGAAG+TGG | + | chr6_4:4460830-4460849 | Msa0972240:CDS | 45.0% | |
| CAACCACAGTTAAACCTAGC+AGG | + | chr6_4:4460857-4460876 | Msa0972240:CDS | 45.0% | |
| TGACCTGCTAGGTTTAACTG+TGG | - | chr6_4:4460863-4460882 | None:intergenic | 45.0% | |
| !! | GCAAGTTGATTAGCATCCTC+TGG | - | chr6_4:4461004-4461023 | None:intergenic | 45.0% |
| GCATCACCAAAAGGTCTAGA+TGG | - | chr6_4:4461064-4461083 | None:intergenic | 45.0% | |
| ACATCTAATGCAGCTCCAAG+TGG | + | chr6_4:4461400-4461419 | Msa0972240:CDS | 45.0% | |
| AAGCCTTCACCTAAGTATGG+TGG | + | chr6_4:4461472-4461491 | Msa0972240:CDS | 45.0% | |
| ACACCACCATACTTAGGTGA+AGG | - | chr6_4:4461478-4461497 | None:intergenic | 45.0% | |
| AGCATCACACCACCATACTT+AGG | - | chr6_4:4461484-4461503 | None:intergenic | 45.0% | |
| ! | AGTATGGTGGTGTGATGCTA+TGG | + | chr6_4:4461485-4461504 | Msa0972240:CDS | 45.0% |
| AAGCTCCATCACCATTGTCT+TGG | - | chr6_4:4460763-4460782 | None:intergenic | 45.0% | |
| TTGAGAGACACATGCAACAC+TGG | + | chr6_4:4460782-4460801 | Msa0972240:CDS | 45.0% | |
| TTCCTCTCGACATTTGGAAG+TGG | + | chr6_4:4460830-4460849 | Msa0972240:CDS | 45.0% | |
| CAACCACAGTTAAACCTAGC+AGG | + | chr6_4:4460857-4460876 | Msa0972240:CDS | 45.0% | |
| TGACCTGCTAGGTTTAACTG+TGG | - | chr6_4:4460863-4460882 | None:intergenic | 45.0% | |
| !! | GCAAGTTGATTAGCATCCTC+TGG | - | chr6_4:4461004-4461023 | None:intergenic | 45.0% |
| GCATCACCAAAAGGTCTAGA+TGG | - | chr6_4:4461064-4461083 | None:intergenic | 45.0% | |
| ACATCTAATGCAGCTCCAAG+TGG | + | chr6_4:4461400-4461419 | Msa0972240:CDS | 45.0% | |
| AAGCCTTCACCTAAGTATGG+TGG | + | chr6_4:4461472-4461491 | Msa0972240:CDS | 45.0% | |
| ACACCACCATACTTAGGTGA+AGG | - | chr6_4:4461478-4461497 | None:intergenic | 45.0% | |
| AGCATCACACCACCATACTT+AGG | - | chr6_4:4461484-4461503 | None:intergenic | 45.0% | |
| ! | AGTATGGTGGTGTGATGCTA+TGG | + | chr6_4:4461485-4461504 | Msa0972240:CDS | 45.0% |
| GACCACTTCCAAATGTCGAG+AGG | - | chr6_4:4460835-4460854 | None:intergenic | 50.0% | |
| ! | GTGGGTTACAATGACCTGCT+AGG | - | chr6_4:4460874-4460893 | None:intergenic | 50.0% |
| GGAGCTGCATTAGATGTAGC+AGG | - | chr6_4:4461397-4461416 | None:intergenic | 50.0% | |
| TCTAATGCAGCTCCAAGTGG+TGG | + | chr6_4:4461403-4461422 | Msa0972240:CDS | 50.0% | |
| !! | AGCTCCAAGTGGTGGTTTTG+TGG | + | chr6_4:4461411-4461430 | Msa0972240:CDS | 50.0% |
| GCTTCCACAAAACCACCACT+TGG | - | chr6_4:4461418-4461437 | None:intergenic | 50.0% | |
| GTGGTGTGATGCTATGGAAC+AGG | + | chr6_4:4461491-4461510 | Msa0972240:CDS | 50.0% | |
| AGGCGCTTTGATGTGCAATC+TGG | + | chr6_4:4461511-4461530 | Msa0972240:CDS | 50.0% | |
| GACCACTTCCAAATGTCGAG+AGG | - | chr6_4:4460835-4460854 | None:intergenic | 50.0% | |
| ! | GTGGGTTACAATGACCTGCT+AGG | - | chr6_4:4460874-4460893 | None:intergenic | 50.0% |
| GGAGCTGCATTAGATGTAGC+AGG | - | chr6_4:4461397-4461416 | None:intergenic | 50.0% | |
| TCTAATGCAGCTCCAAGTGG+TGG | + | chr6_4:4461403-4461422 | Msa0972240:CDS | 50.0% | |
| !! | AGCTCCAAGTGGTGGTTTTG+TGG | + | chr6_4:4461411-4461430 | Msa0972240:CDS | 50.0% |
| GCTTCCACAAAACCACCACT+TGG | - | chr6_4:4461418-4461437 | None:intergenic | 50.0% | |
| GTGGTGTGATGCTATGGAAC+AGG | + | chr6_4:4461491-4461510 | Msa0972240:CDS | 50.0% | |
| AGGCGCTTTGATGTGCAATC+TGG | + | chr6_4:4461511-4461530 | Msa0972240:CDS | 50.0% | |
| TGGGGCCAAGACAATGGTGA+TGG | + | chr6_4:4460755-4460774 | Msa0972240:CDS | 55.0% | |
| TGGGGCCAAGACAATGGTGA+TGG | + | chr6_4:4460755-4460774 | Msa0972240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4460659 | 4461564 | 4460659 | ID=Msa0972240;Name=Msa0972240 |
| chr6_4 | mRNA | 4460659 | 4461564 | 4460659 | ID=Msa0972240-mRNA-1;Parent=Msa0972240;Name=Msa0972240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|301 |
| chr6_4 | exon | 4460659 | 4461564 | 4460659 | ID=Msa0972240-mRNA-1:exon:1922;Parent=Msa0972240-mRNA-1 |
| chr6_4 | CDS | 4460659 | 4461564 | 4460659 | ID=Msa0972240-mRNA-1:cds;Parent=Msa0972240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
