Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977360 | KEH25281.1 | 75.714 | 140 | 24 | 1 | 37 | 166 | 174 | 313 | 4.76e-58 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977360 | A0A072U7E7 | 75.714 | 140 | 24 | 1 | 37 | 166 | 174 | 313 | 2.27e-58 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645570 | Msa0977360 | 0.814615 | 1.407842e-51 | -8.615850e-47 |
| Msa0478920 | Msa0977360 | 0.806678 | 7.321836e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977360 | MtrunA17_Chr6g0456721 | 75.714 | 140 | 24 | 1 | 37 | 166 | 174 | 313 | 4.37e-62 | 198 |
| Msa0977360 | MtrunA17_Chr1g0186871 | 57.692 | 156 | 49 | 3 | 26 | 165 | 191 | 345 | 1.57e-45 | 154 |
| Msa0977360 | MtrunA17_Chr1g0182741 | 57.792 | 154 | 55 | 3 | 23 | 169 | 269 | 419 | 1.81e-44 | 154 |
| Msa0977360 | MtrunA17_Chr1g0182771 | 57.792 | 154 | 55 | 3 | 23 | 169 | 269 | 419 | 1.81e-44 | 154 |
| Msa0977360 | MtrunA17_Chr6g0458941 | 62.903 | 124 | 45 | 1 | 43 | 166 | 244 | 366 | 6.34e-41 | 144 |
| Msa0977360 | MtrunA17_Chr6g0457631 | 55.172 | 145 | 48 | 2 | 32 | 166 | 182 | 319 | 2.11e-39 | 139 |
| Msa0977360 | MtrunA17_Chr3g0077831 | 60.630 | 127 | 49 | 1 | 42 | 168 | 338 | 463 | 1.86e-38 | 139 |
| Msa0977360 | MtrunA17_Chr6g0456491 | 52.857 | 140 | 55 | 2 | 37 | 166 | 32 | 170 | 2.47e-38 | 130 |
| Msa0977360 | MtrunA17_Chr6g0460071 | 53.103 | 145 | 51 | 2 | 32 | 166 | 182 | 319 | 1.41e-37 | 134 |
| Msa0977360 | MtrunA17_Chr2g0278211 | 52.695 | 167 | 66 | 3 | 9 | 165 | 105 | 268 | 2.82e-37 | 133 |
| Msa0977360 | MtrunA17_Chr8g0355571 | 51.149 | 174 | 69 | 3 | 8 | 169 | 206 | 375 | 5.98e-37 | 134 |
| Msa0977360 | MtrunA17_Chr4g0076081 | 53.293 | 167 | 65 | 4 | 9 | 165 | 292 | 455 | 7.24e-36 | 131 |
| Msa0977360 | MtrunA17_Chr6g0456481 | 49.123 | 171 | 72 | 6 | 7 | 166 | 62 | 228 | 1.79e-35 | 126 |
| Msa0977360 | MtrunA17_Chr5g0420061 | 60.976 | 123 | 45 | 2 | 43 | 165 | 212 | 331 | 2.01e-35 | 128 |
| Msa0977360 | MtrunA17_Chr6g0456731 | 48.214 | 168 | 66 | 4 | 22 | 175 | 124 | 284 | 1.19e-34 | 124 |
| Msa0977360 | MtrunA17_Chr4g0029121 | 50.888 | 169 | 67 | 4 | 9 | 166 | 294 | 457 | 1.20e-34 | 128 |
| Msa0977360 | MtrunA17_Chr4g0000911 | 57.143 | 126 | 53 | 1 | 43 | 168 | 315 | 439 | 3.16e-33 | 124 |
| Msa0977360 | MtrunA17_Chr5g0432971 | 50.000 | 168 | 70 | 4 | 9 | 165 | 287 | 451 | 3.47e-33 | 124 |
| Msa0977360 | MtrunA17_Chr6g0456711 | 46.429 | 168 | 76 | 4 | 9 | 166 | 307 | 470 | 4.58e-32 | 121 |
| Msa0977360 | MtrunA17_Chr6g0467001 | 49.664 | 149 | 69 | 3 | 22 | 170 | 176 | 318 | 1.13e-31 | 118 |
| Msa0977360 | MtrunA17_Chr3g0140831 | 56.452 | 124 | 51 | 2 | 43 | 166 | 336 | 456 | 2.72e-31 | 119 |
| Msa0977360 | MtrunA17_Chr6g0456461 | 48.101 | 158 | 56 | 4 | 27 | 166 | 93 | 242 | 3.79e-31 | 115 |
| Msa0977360 | MtrunA17_Chr5g0446541 | 56.198 | 121 | 52 | 1 | 43 | 163 | 347 | 466 | 9.40e-31 | 117 |
| Msa0977360 | MtrunA17_Chr1g0212621 | 54.688 | 128 | 54 | 3 | 43 | 168 | 68 | 193 | 1.05e-30 | 114 |
| Msa0977360 | MtrunA17_Chr7g0231981 | 54.839 | 124 | 54 | 2 | 43 | 166 | 170 | 291 | 1.61e-30 | 115 |
| Msa0977360 | MtrunA17_Chr5g0411311 | 50.365 | 137 | 65 | 2 | 53 | 187 | 336 | 471 | 1.78e-30 | 116 |
| Msa0977360 | MtrunA17_Chr7g0225811 | 55.556 | 126 | 51 | 4 | 42 | 166 | 388 | 509 | 3.78e-30 | 115 |
| Msa0977360 | MtrunA17_Chr3g0120241 | 50.394 | 127 | 58 | 2 | 43 | 169 | 94 | 215 | 9.04e-30 | 110 |
| Msa0977360 | MtrunA17_Chr6g0456501 | 53.226 | 124 | 51 | 1 | 43 | 166 | 202 | 318 | 1.99e-29 | 112 |
| Msa0977360 | MtrunA17_Chr4g0002581 | 44.767 | 172 | 75 | 3 | 5 | 165 | 59 | 221 | 3.61e-28 | 106 |
| Msa0977360 | MtrunA17_Chr3g0091181 | 49.367 | 158 | 65 | 6 | 7 | 153 | 345 | 498 | 3.78e-28 | 110 |
| Msa0977360 | MtrunA17_Chr1g0212651 | 50.000 | 130 | 57 | 3 | 43 | 168 | 145 | 270 | 2.19e-27 | 105 |
| Msa0977360 | MtrunA17_Chr4g0002471 | 54.412 | 136 | 58 | 2 | 43 | 175 | 165 | 299 | 5.86e-27 | 103 |
| Msa0977360 | MtrunA17_Chr6g0456741 | 37.438 | 203 | 76 | 4 | 8 | 161 | 95 | 295 | 7.38e-27 | 105 |
| Msa0977360 | MtrunA17_Chr3g0115841 | 41.975 | 162 | 77 | 3 | 21 | 182 | 111 | 255 | 1.32e-26 | 103 |
| Msa0977360 | MtrunA17_Chr3g0121091 | 48.000 | 125 | 60 | 1 | 42 | 166 | 292 | 411 | 4.31e-25 | 101 |
| Msa0977360 | MtrunA17_Chr4g0008501 | 43.716 | 183 | 89 | 5 | 11 | 182 | 313 | 492 | 3.00e-24 | 99.4 |
| Msa0977360 | MtrunA17_Chr1g0171251 | 44.970 | 169 | 69 | 6 | 8 | 158 | 309 | 471 | 3.09e-24 | 99.0 |
| Msa0977360 | MtrunA17_Chr8g0342371 | 48.780 | 123 | 60 | 2 | 43 | 165 | 339 | 458 | 8.22e-24 | 97.8 |
| Msa0977360 | MtrunA17_Chr4g0002671 | 43.919 | 148 | 80 | 2 | 43 | 188 | 311 | 457 | 8.79e-24 | 97.8 |
| Msa0977360 | MtrunA17_Chr3g0115571 | 47.581 | 124 | 59 | 3 | 42 | 163 | 317 | 436 | 1.78e-23 | 96.3 |
| Msa0977360 | MtrunA17_Chr8g0352431 | 49.593 | 123 | 58 | 3 | 43 | 165 | 334 | 452 | 9.67e-23 | 94.7 |
| Msa0977360 | MtrunA17_Chr7g0225241 | 55.172 | 87 | 36 | 2 | 46 | 132 | 1 | 84 | 7.48e-20 | 80.9 |
| Msa0977360 | MtrunA17_Chr6g0460701 | 51.020 | 98 | 45 | 3 | 69 | 165 | 247 | 342 | 2.74e-19 | 84.7 |
| Msa0977360 | MtrunA17_Chr1g0182691 | 50.000 | 100 | 38 | 4 | 100 | 191 | 1 | 96 | 3.50e-18 | 78.2 |
| Msa0977360 | MtrunA17_Chr3g0115261 | 43.548 | 124 | 62 | 2 | 43 | 165 | 104 | 220 | 3.92e-18 | 79.7 |
| Msa0977360 | MtrunA17_Chr4g0002511 | 49.485 | 97 | 45 | 3 | 69 | 164 | 121 | 214 | 1.59e-17 | 77.8 |
| Msa0977360 | MtrunA17_Chr6g0456471 | 48.936 | 94 | 40 | 2 | 80 | 166 | 2 | 94 | 3.54e-17 | 76.3 |
| Msa0977360 | MtrunA17_Chr5g0428271 | 41.964 | 112 | 50 | 2 | 8 | 106 | 254 | 363 | 3.88e-17 | 78.2 |
| Msa0977360 | MtrunA17_Chr4g0000971 | 50.538 | 93 | 36 | 3 | 83 | 166 | 163 | 254 | 8.97e-17 | 77.4 |
| Msa0977360 | MtrunA17_Chr4g0000971 | 62.264 | 53 | 19 | 1 | 112 | 164 | 263 | 314 | 2.94e-11 | 61.6 |
| Msa0977360 | MtrunA17_Chr6g0456511 | 42.742 | 124 | 46 | 3 | 43 | 166 | 64 | 162 | 9.04e-17 | 76.3 |
| Msa0977360 | MtrunA17_Chr4g0002951 | 41.803 | 122 | 54 | 3 | 43 | 164 | 145 | 249 | 1.13e-16 | 76.3 |
| Msa0977360 | MtrunA17_Chr1g0158891 | 44.860 | 107 | 58 | 1 | 59 | 165 | 198 | 303 | 1.67e-16 | 76.3 |
| Msa0977360 | MtrunA17_Chr4g0002701 | 38.824 | 170 | 78 | 7 | 9 | 168 | 181 | 334 | 2.18e-16 | 75.9 |
| Msa0977360 | MtrunA17_Chr3g0120141 | 35.149 | 202 | 105 | 7 | 1 | 191 | 32 | 218 | 3.44e-16 | 75.1 |
| Msa0977360 | MtrunA17_Chr5g0446511 | 58.462 | 65 | 27 | 0 | 43 | 107 | 69 | 133 | 1.07e-15 | 70.5 |
| Msa0977360 | MtrunA17_Chr3g0115831 | 36.986 | 146 | 87 | 2 | 36 | 181 | 107 | 247 | 1.66e-15 | 72.8 |
| Msa0977360 | MtrunA17_Chr3g0106541 | 38.281 | 128 | 67 | 2 | 75 | 194 | 326 | 449 | 7.02e-15 | 72.0 |
| Msa0977360 | MtrunA17_Chr6g0461961 | 36.310 | 168 | 62 | 6 | 15 | 158 | 165 | 311 | 1.72e-14 | 70.5 |
| Msa0977360 | MtrunA17_Chr4g0001031 | 52.055 | 73 | 30 | 1 | 43 | 110 | 311 | 383 | 5.60e-14 | 69.3 |
| Msa0977360 | MtrunA17_Chr8g0355591 | 44.706 | 85 | 44 | 2 | 83 | 165 | 57 | 140 | 2.35e-13 | 65.1 |
| Msa0977360 | MtrunA17_Chr4g0002421 | 34.591 | 159 | 64 | 5 | 7 | 165 | 68 | 186 | 7.56e-13 | 65.9 |
| Msa0977360 | MtrunA17_Chr2g0316761 | 62.295 | 61 | 21 | 2 | 105 | 165 | 1 | 59 | 8.25e-13 | 63.2 |
| Msa0977360 | MtrunA17_Chr4g0011101 | 42.268 | 97 | 55 | 1 | 69 | 165 | 240 | 335 | 2.43e-12 | 64.7 |
| Msa0977360 | MtrunA17_Chr1g0158901 | 57.627 | 59 | 24 | 1 | 107 | 165 | 2 | 59 | 3.30e-12 | 62.0 |
| Msa0977360 | MtrunA17_Chr1g0155941 | 61.111 | 54 | 20 | 1 | 112 | 165 | 3 | 55 | 2.75e-11 | 59.7 |
| Msa0977360 | MtrunA17_Chr4g0009861 | 41.304 | 92 | 51 | 3 | 69 | 159 | 102 | 191 | 5.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAATCATTGTCGAAAA+TGG | 0.199178 | 6_4:+12085178 | Msa0977360:CDS |
| CAAATCAAGCAGCTCCAAAT+TGG | 0.214743 | 6_4:-12085578 | None:intergenic |
| ACAACATTTGGATCTTTATC+TGG | 0.243205 | 6_4:+12085258 | Msa0977360:CDS |
| CAAAGAAATTTAAGCAAGTT+TGG | 0.249907 | 6_4:+12088427 | Msa0977360:CDS |
| CAGCTCCAAATTGGGGAAAA+TGG | 0.260392 | 6_4:-12085569 | None:intergenic |
| CCAAATGTTGTATTCCATTC+AGG | 0.277562 | 6_4:-12085246 | None:intergenic |
| AAAGCAATAACTAAGGTTAA+TGG | 0.309572 | 6_4:-12085341 | None:intergenic |
| TTTACTCAGTGATGTCAAAA+TGG | 0.319076 | 6_4:+12085408 | Msa0977360:CDS |
| GAGTTGTCTTTGTTTCTTGC+TGG | 0.341756 | 6_4:+12085310 | Msa0977360:CDS |
| AAATCAAGCAGCTCCAAATT+GGG | 0.358651 | 6_4:-12085577 | None:intergenic |
| CCTGAATGGAATACAACATT+TGG | 0.362678 | 6_4:+12085246 | Msa0977360:CDS |
| TCAATTGAAGTCTCTCTGTT+TGG | 0.372247 | 6_4:+12085501 | Msa0977360:CDS |
| ACCTCCCGAGGAGGCGATCC+AGG | 0.406320 | 6_4:-12085213 | None:intergenic |
| TATGCTACAGGCCAGGTTAC+CGG | 0.425273 | 6_4:+12088382 | Msa0977360:intron |
| AGGGAGTTCTAATTCTTTGA+AGG | 0.427638 | 6_4:+12085459 | Msa0977360:CDS |
| CTGTCCTGGATCGCCTCCTC+GGG | 0.445498 | 6_4:+12085209 | Msa0977360:CDS |
| AAATGGAACACTTCCTGTCC+TGG | 0.451458 | 6_4:+12085195 | Msa0977360:CDS |
| CTCGGCTGGAAGACAGAGAA+AGG | 0.459093 | 6_4:-12084401 | None:intergenic |
| TTTCGACAATGATTGAGAAT+CGG | 0.468091 | 6_4:-12085174 | None:intergenic |
| AAAATGGAACACACAGGTAT+CGG | 0.475049 | 6_4:+12085424 | Msa0977360:CDS |
| CTTGGCTTCATACACTTCCA+TGG | 0.477569 | 6_4:-12084573 | None:intergenic |
| TTGTATTCCATTCAGGAAGT+TGG | 0.492919 | 6_4:-12085239 | None:intergenic |
| TATCATGATCTCCGGTAACC+TGG | 0.496510 | 6_4:-12088393 | None:intergenic |
| AACAGAGAGACTTCAATTGA+GGG | 0.499788 | 6_4:-12085498 | None:intergenic |
| AAATGGAACACACAGGTATC+GGG | 0.508714 | 6_4:+12085425 | Msa0977360:CDS |
| CCCTTAGCATTCCTTCTCCA+TGG | 0.509555 | 6_4:+12084556 | Msa0977360:exon |
| AAACAGAGAGACTTCAATTG+AGG | 0.510285 | 6_4:-12085499 | None:intergenic |
| CGTTCATTAACGAGGAAAAG+AGG | 0.511590 | 6_4:-12084520 | None:intergenic |
| TTTGGACTATAACTCTCGGC+TGG | 0.512708 | 6_4:-12084415 | None:intergenic |
| TCCTGGATCGCCTCCTCGGG+AGG | 0.517340 | 6_4:+12085212 | Msa0977360:CDS |
| AGGTTCACCAACTTCCTGAA+TGG | 0.521771 | 6_4:+12085232 | Msa0977360:CDS |
| AGCAATCTTATCATGATCTC+CGG | 0.526229 | 6_4:-12088401 | None:intergenic |
| TGAGATCAAAGCAATAACTA+AGG | 0.526975 | 6_4:-12085348 | None:intergenic |
| CAAACAGTTCCTCTCTATCT+CGG | 0.533052 | 6_4:+12085144 | Msa0977360:intron |
| GTTCATTAACGAGGAAAAGA+GGG | 0.556232 | 6_4:-12084519 | None:intergenic |
| TTCATACACTTCCATGGAGA+AGG | 0.563694 | 6_4:-12084567 | None:intergenic |
| GGTATCGGGAAAGTGAGTGC+AGG | 0.568680 | 6_4:+12085439 | Msa0977360:CDS |
| TTGGAGCTGCTTGATTTGAG+TGG | 0.573789 | 6_4:+12085583 | Msa0977360:CDS |
| CATGGAAGTGTATGAAGCCA+AGG | 0.588286 | 6_4:+12084574 | Msa0977360:exon |
| TCGGCTGGAAGACAGAGAAA+GGG | 0.592329 | 6_4:-12084400 | None:intergenic |
| AATCAAGCAGCTCCAAATTG+GGG | 0.598225 | 6_4:-12085576 | None:intergenic |
| GGTTGTGATCAAATATCTCA+AGG | 0.608624 | 6_4:+12085604 | Msa0977360:CDS |
| AGCAAGAAACAAAGACAACT+CGG | 0.612345 | 6_4:-12085308 | None:intergenic |
| GGAGACGGTCCGAGATAGAG+AGG | 0.617375 | 6_4:-12085153 | None:intergenic |
| GTATCGGGAAAGTGAGTGCA+GGG | 0.618679 | 6_4:+12085440 | Msa0977360:CDS |
| GGAAGTTGGTGAACCTCCCG+AGG | 0.620956 | 6_4:-12085225 | None:intergenic |
| CCATGGAGAAGGAATGCTAA+GGG | 0.623628 | 6_4:-12084556 | None:intergenic |
| GCTGGAAGACAGAGAAAGGG+AGG | 0.633631 | 6_4:-12084397 | None:intergenic |
| TCCATGGAGAAGGAATGCTA+AGG | 0.635806 | 6_4:-12084557 | None:intergenic |
| AGTTGGTGAACCTCCCGAGG+AGG | 0.668916 | 6_4:-12085222 | None:intergenic |
| CAATGATTGAGAATCGGAGA+CGG | 0.671009 | 6_4:-12085168 | None:intergenic |
| ACGTGCAACGTTCATTAACG+AGG | 0.700508 | 6_4:-12084528 | None:intergenic |
| GATGTCAAAATGGAACACAC+AGG | 0.710756 | 6_4:+12085418 | Msa0977360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTATGTTATAATTTT+CGG | + | chr6_4:12085029-12085048 | Msa0977360:intron | 10.0% |
| !! | NNNNNNNNNNTGAATTTAAC+TGG | + | chr6_4:12085758-12085777 | Msa0977360:intron | 10.0% |
| !!! | AATTGAAAAAAATGTATTTT+AGG | + | chr6_4:12085978-12085997 | Msa0977360:intron | 10.0% |
| !!! | ATTGAAAAAAATGTATTTTA+GGG | + | chr6_4:12085979-12085998 | Msa0977360:intron | 10.0% |
| !!! | TTATTTTAAAACTATAGTAA+TGG | - | chr6_4:12087387-12087406 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAATAATAAAAG+GGG | + | chr6_4:12087393-12087412 | Msa0977360:intron | 10.0% |
| !!! | TATGTATAAAATTTTCTTTT+TGG | + | chr6_4:12088152-12088171 | Msa0977360:intron | 10.0% |
| !!! | AATGTTTATGTTATAATTTT+CGG | + | chr6_4:12085029-12085048 | Msa0977360:intron | 10.0% |
| !! | NNNNNNNNNNTGAATTTAAC+TGG | + | chr6_4:12085758-12085777 | Msa0977360:intron | 10.0% |
| !!! | AATTGAAAAAAATGTATTTT+AGG | + | chr6_4:12085978-12085997 | Msa0977360:intron | 10.0% |
| !!! | ATTGAAAAAAATGTATTTTA+GGG | + | chr6_4:12085979-12085998 | Msa0977360:intron | 10.0% |
| !!! | TTATTTTAAAACTATAGTAA+TGG | - | chr6_4:12087387-12087406 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAATAATAAAAG+GGG | + | chr6_4:12087393-12087412 | Msa0977360:intron | 10.0% |
| !!! | TATGTATAAAATTTTCTTTT+TGG | + | chr6_4:12088152-12088171 | Msa0977360:intron | 10.0% |
| !!! | TTGAAAAAAATGTATTTTAG+GGG | + | chr6_4:12085980-12085999 | Msa0977360:intron | 15.0% |
| !!! | AGTTTTAAAATAATAAAAGG+GGG | + | chr6_4:12087394-12087413 | Msa0977360:intron | 15.0% |
| !!! | TTTTTAATATTTGCATATAG+TGG | + | chr6_4:12087467-12087486 | Msa0977360:intron | 15.0% |
| !!! | AAATTAAATGTGTTATTAGA+AGG | - | chr6_4:12088197-12088216 | None:intergenic | 15.0% |
| !!! | TCTAATAACACATTTAATTT+AGG | + | chr6_4:12088197-12088216 | Msa0977360:intron | 15.0% |
| !! | TAATTTAGGTATATATGAAT+AGG | + | chr6_4:12088211-12088230 | Msa0977360:intron | 15.0% |
| !!! | TTGAAAAAAATGTATTTTAG+GGG | + | chr6_4:12085980-12085999 | Msa0977360:intron | 15.0% |
| !!! | AGTTTTAAAATAATAAAAGG+GGG | + | chr6_4:12087394-12087413 | Msa0977360:intron | 15.0% |
| !!! | TTTTTAATATTTGCATATAG+TGG | + | chr6_4:12087467-12087486 | Msa0977360:intron | 15.0% |
| !!! | AAATTAAATGTGTTATTAGA+AGG | - | chr6_4:12088197-12088216 | None:intergenic | 15.0% |
| !!! | TCTAATAACACATTTAATTT+AGG | + | chr6_4:12088197-12088216 | Msa0977360:intron | 15.0% |
| !! | TAATTTAGGTATATATGAAT+AGG | + | chr6_4:12088211-12088230 | Msa0977360:intron | 15.0% |
| !! | AAATTACACATTAGGAAATT+AGG | - | chr6_4:12084621-12084640 | None:intergenic | 20.0% |
| !!! | ATTTCCTAATGTGTAATTTT+CGG | + | chr6_4:12084622-12084641 | Msa0977360:intron | 20.0% |
| !! | ATTTGATTAGATATAAGAGA+TGG | + | chr6_4:12084792-12084811 | Msa0977360:intron | 20.0% |
| !! | TTAATTCAGTTATGTTATGA+TGG | + | chr6_4:12084947-12084966 | Msa0977360:intron | 20.0% |
| !! | TATTTAATATTGTGTTTCGT+TGG | + | chr6_4:12085065-12085084 | Msa0977360:intron | 20.0% |
| !! | ATTTAATATTGTGTTTCGTT+GGG | + | chr6_4:12085066-12085085 | Msa0977360:intron | 20.0% |
| !! | AAATCGCATTTGAAAATTAT+TGG | - | chr6_4:12086768-12086787 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATTTGTTTATC+TGG | + | chr6_4:12086897-12086916 | Msa0977360:intron | 20.0% |
| !!! | TTTGACTTAATTATATCTGT+TGG | + | chr6_4:12087260-12087279 | Msa0977360:intron | 20.0% |
| !! | ACTCATTAGTAAACAAAAAA+AGG | + | chr6_4:12087677-12087696 | Msa0977360:intron | 20.0% |
| !!! | AGTGATGTATTTTCAATTTA+TGG | + | chr6_4:12087953-12087972 | Msa0977360:intron | 20.0% |
| !!! | GTGATGTATTTTCAATTTAT+GGG | + | chr6_4:12087954-12087973 | Msa0977360:intron | 20.0% |
| !!! | TGATGTATTTTCAATTTATG+GGG | + | chr6_4:12087955-12087974 | Msa0977360:intron | 20.0% |
| !! | AAATTACACATTAGGAAATT+AGG | - | chr6_4:12084621-12084640 | None:intergenic | 20.0% |
| !!! | ATTTCCTAATGTGTAATTTT+CGG | + | chr6_4:12084622-12084641 | Msa0977360:intron | 20.0% |
| !! | ATTTGATTAGATATAAGAGA+TGG | + | chr6_4:12084792-12084811 | Msa0977360:intron | 20.0% |
| !! | TTAATTCAGTTATGTTATGA+TGG | + | chr6_4:12084947-12084966 | Msa0977360:intron | 20.0% |
| !! | TATTTAATATTGTGTTTCGT+TGG | + | chr6_4:12085065-12085084 | Msa0977360:intron | 20.0% |
| !! | ATTTAATATTGTGTTTCGTT+GGG | + | chr6_4:12085066-12085085 | Msa0977360:intron | 20.0% |
| !! | AAATCGCATTTGAAAATTAT+TGG | - | chr6_4:12086768-12086787 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATTTGTTTATC+TGG | + | chr6_4:12086897-12086916 | Msa0977360:intron | 20.0% |
| !!! | TTTGACTTAATTATATCTGT+TGG | + | chr6_4:12087260-12087279 | Msa0977360:intron | 20.0% |
| !! | ACTCATTAGTAAACAAAAAA+AGG | + | chr6_4:12087677-12087696 | Msa0977360:intron | 20.0% |
| !!! | AGTGATGTATTTTCAATTTA+TGG | + | chr6_4:12087953-12087972 | Msa0977360:intron | 20.0% |
| !!! | GTGATGTATTTTCAATTTAT+GGG | + | chr6_4:12087954-12087973 | Msa0977360:intron | 20.0% |
| !!! | TGATGTATTTTCAATTTATG+GGG | + | chr6_4:12087955-12087974 | Msa0977360:intron | 20.0% |
| ! | ATTACCGAAAATTACACATT+AGG | - | chr6_4:12084629-12084648 | None:intergenic | 25.0% |
| !! | GTGTAATTTTCGGTAATTAA+AGG | + | chr6_4:12084632-12084651 | Msa0977360:intron | 25.0% |
| ! | CATAAGGAATATGAAATTGA+AGG | + | chr6_4:12084691-12084710 | Msa0977360:intron | 25.0% |
| ! | AAATTCTGCACTAATATAGT+TGG | + | chr6_4:12085006-12085025 | Msa0977360:intron | 25.0% |
| ! | AAAGCAATAACTAAGGTTAA+TGG | - | chr6_4:12085344-12085363 | None:intergenic | 25.0% |
| !!! | AAGGTATTTGTCAAGTTTTA+AGG | + | chr6_4:12085623-12085642 | Msa0977360:intron | 25.0% |
| ! | TCATTTAAGTGACGAAATTA+GGG | + | chr6_4:12086006-12086025 | Msa0977360:intron | 25.0% |
| !! | ATGTTGAAGGTTAATTTGAA+GGG | - | chr6_4:12086241-12086260 | None:intergenic | 25.0% |
| !! | AATGTTGAAGGTTAATTTGA+AGG | - | chr6_4:12086242-12086261 | None:intergenic | 25.0% |
| !!! | TAATTTGTTGTTGTTGTTGT+TGG | + | chr6_4:12086411-12086430 | Msa0977360:intron | 25.0% |
| !! | AAAAGAGCTTTTCTCTTTAT+TGG | + | chr6_4:12086539-12086558 | Msa0977360:intron | 25.0% |
| !!! | CTACTTATTTTGCTTTTTCT+TGG | - | chr6_4:12086741-12086760 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTACAGTAGT+TGG | + | chr6_4:12086950-12086969 | Msa0977360:intron | 25.0% |
| ! | ACGAAATAATAACACAACTA+TGG | - | chr6_4:12087157-12087176 | None:intergenic | 25.0% |
| !!! | ATATCTGTTGGCTTAATTAA+AGG | + | chr6_4:12087272-12087291 | Msa0977360:intron | 25.0% |
| !! | AGTTTGGTTAATTTTTGCTT+TGG | - | chr6_4:12087599-12087618 | None:intergenic | 25.0% |
| ! | CAAAAAACTGATCAATTACT+GGG | - | chr6_4:12087766-12087785 | None:intergenic | 25.0% |
| !!! | CAGTAATTGATCAGTTTTTT+GGG | + | chr6_4:12087765-12087784 | Msa0977360:intron | 25.0% |
| ! | TAGGTATATATGAATAGGAT+CGG | + | chr6_4:12088216-12088235 | Msa0977360:intron | 25.0% |
| ! | TATTTCAAATGTCACTCAAT+TGG | - | chr6_4:12088344-12088363 | None:intergenic | 25.0% |
| ! | CAAAGAAATTTAAGCAAGTT+TGG | + | chr6_4:12088427-12088446 | Msa0977360:CDS | 25.0% |
| ! | ATTACCGAAAATTACACATT+AGG | - | chr6_4:12084629-12084648 | None:intergenic | 25.0% |
| !! | GTGTAATTTTCGGTAATTAA+AGG | + | chr6_4:12084632-12084651 | Msa0977360:intron | 25.0% |
| ! | CATAAGGAATATGAAATTGA+AGG | + | chr6_4:12084691-12084710 | Msa0977360:intron | 25.0% |
| ! | AAATTCTGCACTAATATAGT+TGG | + | chr6_4:12085006-12085025 | Msa0977360:intron | 25.0% |
| ! | AAAGCAATAACTAAGGTTAA+TGG | - | chr6_4:12085344-12085363 | None:intergenic | 25.0% |
| !!! | AAGGTATTTGTCAAGTTTTA+AGG | + | chr6_4:12085623-12085642 | Msa0977360:intron | 25.0% |
| ! | TCATTTAAGTGACGAAATTA+GGG | + | chr6_4:12086006-12086025 | Msa0977360:intron | 25.0% |
| !! | ATGTTGAAGGTTAATTTGAA+GGG | - | chr6_4:12086241-12086260 | None:intergenic | 25.0% |
| !! | AATGTTGAAGGTTAATTTGA+AGG | - | chr6_4:12086242-12086261 | None:intergenic | 25.0% |
| !!! | TAATTTGTTGTTGTTGTTGT+TGG | + | chr6_4:12086411-12086430 | Msa0977360:intron | 25.0% |
| !! | AAAAGAGCTTTTCTCTTTAT+TGG | + | chr6_4:12086539-12086558 | Msa0977360:intron | 25.0% |
| !!! | CTACTTATTTTGCTTTTTCT+TGG | - | chr6_4:12086741-12086760 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTACAGTAGT+TGG | + | chr6_4:12086950-12086969 | Msa0977360:intron | 25.0% |
| ! | ACGAAATAATAACACAACTA+TGG | - | chr6_4:12087157-12087176 | None:intergenic | 25.0% |
| !!! | ATATCTGTTGGCTTAATTAA+AGG | + | chr6_4:12087272-12087291 | Msa0977360:intron | 25.0% |
| !! | AGTTTGGTTAATTTTTGCTT+TGG | - | chr6_4:12087599-12087618 | None:intergenic | 25.0% |
| ! | CAAAAAACTGATCAATTACT+GGG | - | chr6_4:12087766-12087785 | None:intergenic | 25.0% |
| !!! | CAGTAATTGATCAGTTTTTT+GGG | + | chr6_4:12087765-12087784 | Msa0977360:intron | 25.0% |
| ! | TAGGTATATATGAATAGGAT+CGG | + | chr6_4:12088216-12088235 | Msa0977360:intron | 25.0% |
| ! | TATTTCAAATGTCACTCAAT+TGG | - | chr6_4:12088344-12088363 | None:intergenic | 25.0% |
| ! | CAAAGAAATTTAAGCAAGTT+TGG | + | chr6_4:12088427-12088446 | Msa0977360:CDS | 25.0% |
| ! | ATGTCAAAAATGGAGGATTT+TGG | - | chr6_4:12084436-12084455 | None:intergenic | 30.0% |
| TTAGCTTATGTCAAAAATGG+AGG | - | chr6_4:12084443-12084462 | None:intergenic | 30.0% | |
| AGCTTAGCTTATGTCAAAAA+TGG | - | chr6_4:12084446-12084465 | None:intergenic | 30.0% | |
| TTCGGTAATTAAAGGTTTGT+TGG | + | chr6_4:12084640-12084659 | Msa0977360:intron | 30.0% | |
| !! | TAAAGGTTTGTTGGATTGAT+AGG | + | chr6_4:12084649-12084668 | Msa0977360:intron | 30.0% |
| TGCTGTTGAATATTGACATA+AGG | + | chr6_4:12084675-12084694 | Msa0977360:intron | 30.0% | |
| GAAATTGAAGGATTGAAGAT+AGG | + | chr6_4:12084703-12084722 | Msa0977360:intron | 30.0% | |
| TAATCTGATTCAGAAGCTTA+TGG | + | chr6_4:12084748-12084767 | Msa0977360:intron | 30.0% | |
| !! | AAGAGATGGATTTGTTAGTT+TGG | + | chr6_4:12084806-12084825 | Msa0977360:intron | 30.0% |
| !! | TGGATTTGTTAGTTTGGTTA+TGG | + | chr6_4:12084812-12084831 | Msa0977360:intron | 30.0% |
| ! | ATTTGTTAGTTTGGTTATGG+TGG | + | chr6_4:12084815-12084834 | Msa0977360:intron | 30.0% |
| TTGAGTGTGAATTAAACCAT+TGG | + | chr6_4:12084904-12084923 | Msa0977360:intron | 30.0% | |
| AACCATTGGAAAATAGACTT+TGG | + | chr6_4:12084918-12084937 | Msa0977360:intron | 30.0% | |
| ! | TTCCAAAGTCTATTTTCCAA+TGG | - | chr6_4:12084923-12084942 | None:intergenic | 30.0% |
| ! | TTGGAAAATAGACTTTGGAA+TGG | + | chr6_4:12084923-12084942 | Msa0977360:intron | 30.0% |
| ! | TGTTATAATTTTCGGTACAG+TGG | + | chr6_4:12085037-12085056 | Msa0977360:intron | 30.0% |
| TTTCGACAATGATTGAGAAT+CGG | - | chr6_4:12085177-12085196 | None:intergenic | 30.0% | |
| TTCTCAATCATTGTCGAAAA+TGG | + | chr6_4:12085178-12085197 | Msa0977360:CDS | 30.0% | |
| ACAACATTTGGATCTTTATC+TGG | + | chr6_4:12085258-12085277 | Msa0977360:CDS | 30.0% | |
| TGAGATCAAAGCAATAACTA+AGG | - | chr6_4:12085351-12085370 | None:intergenic | 30.0% | |
| !! | ATTTTGACATCACTGAGTAA+AGG | - | chr6_4:12085409-12085428 | None:intergenic | 30.0% |
| TTTACTCAGTGATGTCAAAA+TGG | + | chr6_4:12085408-12085427 | Msa0977360:CDS | 30.0% | |
| TAAGGAGATGTTGTAAGATT+AGG | + | chr6_4:12085641-12085660 | Msa0977360:intron | 30.0% | |
| !! | AAACTTTGAAGTTCCTAAGT+TGG | + | chr6_4:12085808-12085827 | Msa0977360:intron | 30.0% |
| GTTGAACTTGTCATATACAA+AGG | + | chr6_4:12085835-12085854 | Msa0977360:intron | 30.0% | |
| GTCATTTAAGTGACGAAATT+AGG | + | chr6_4:12086005-12086024 | Msa0977360:intron | 30.0% | |
| ATTCATGCATGATAAGTGAA+TGG | + | chr6_4:12086170-12086189 | Msa0977360:intron | 30.0% | |
| TAACAACTGAACAATGTTGA+AGG | - | chr6_4:12086254-12086273 | None:intergenic | 30.0% | |
| ! | TGTCTTTTCACTAGCAATTT+TGG | + | chr6_4:12086361-12086380 | Msa0977360:intron | 30.0% |
| !! | TTGGTTCTGTAACTTCTATT+TGG | + | chr6_4:12086558-12086577 | Msa0977360:intron | 30.0% |
| ATGATATTTGAGAAAGTCTG+TGG | + | chr6_4:12086692-12086711 | Msa0977360:intron | 30.0% | |
| AAAGTCTGTGGTTAAATTTG+TGG | + | chr6_4:12086704-12086723 | Msa0977360:intron | 30.0% | |
| ! | CTATTTTCGTTCCTTTACAA+AGG | + | chr6_4:12086805-12086824 | Msa0977360:intron | 30.0% |
| TGTTGCAGTAGACAAATAAT+TGG | + | chr6_4:12086992-12087011 | Msa0977360:intron | 30.0% | |
| AATACAATACATACGTACTC+AGG | - | chr6_4:12087085-12087104 | None:intergenic | 30.0% | |
| CAAACACTATAGCTATTCTA+TGG | - | chr6_4:12087221-12087240 | None:intergenic | 30.0% | |
| AAATGCCTTACTTATGAGTT+AGG | + | chr6_4:12087328-12087347 | Msa0977360:intron | 30.0% | |
| AAATACTAAACTGACTGCAA+GGG | - | chr6_4:12087517-12087536 | None:intergenic | 30.0% | |
| TAAGTGATACTTCTCTGATA+TGG | - | chr6_4:12087559-12087578 | None:intergenic | 30.0% | |
| TTTACCGTATGCATTCATAT+AGG | + | chr6_4:12087622-12087641 | Msa0977360:intron | 30.0% | |
| TATTCTCAGTATACCTGTAT+AGG | + | chr6_4:12087652-12087671 | Msa0977360:intron | 30.0% | |
| TACTAATGAGTAACCTATAC+AGG | - | chr6_4:12087668-12087687 | None:intergenic | 30.0% | |
| CCAAAAAACTGATCAATTAC+TGG | - | chr6_4:12087767-12087786 | None:intergenic | 30.0% | |
| !!! | CCAGTAATTGATCAGTTTTT+TGG | + | chr6_4:12087764-12087783 | Msa0977360:intron | 30.0% |
| !!! | TAATTGATCAGTTTTTTGGG+TGG | + | chr6_4:12087768-12087787 | Msa0977360:intron | 30.0% |
| !!! | AATTGATCAGTTTTTTGGGT+GGG | + | chr6_4:12087769-12087788 | Msa0977360:intron | 30.0% |
| AGTTTCAATTTAGTGAGTGT+TGG | + | chr6_4:12087867-12087886 | Msa0977360:intron | 30.0% | |
| !!! | TTTTCTTTTTGGAATCCAGA+TGG | + | chr6_4:12088163-12088182 | Msa0977360:intron | 30.0% |
| !!! | TTTCTTTTTGGAATCCAGAT+GGG | + | chr6_4:12088164-12088183 | Msa0977360:intron | 30.0% |
| ! | ATTCATTTTGTGTATGCTAC+AGG | + | chr6_4:12088370-12088389 | Msa0977360:intron | 30.0% |
| TAAAGAAAAAGCTCTCATGT+TGG | + | chr6_4:12088453-12088472 | Msa0977360:CDS | 30.0% | |
| ! | ATGTCAAAAATGGAGGATTT+TGG | - | chr6_4:12084436-12084455 | None:intergenic | 30.0% |
| TTAGCTTATGTCAAAAATGG+AGG | - | chr6_4:12084443-12084462 | None:intergenic | 30.0% | |
| AGCTTAGCTTATGTCAAAAA+TGG | - | chr6_4:12084446-12084465 | None:intergenic | 30.0% | |
| TTCGGTAATTAAAGGTTTGT+TGG | + | chr6_4:12084640-12084659 | Msa0977360:intron | 30.0% | |
| !! | TAAAGGTTTGTTGGATTGAT+AGG | + | chr6_4:12084649-12084668 | Msa0977360:intron | 30.0% |
| TGCTGTTGAATATTGACATA+AGG | + | chr6_4:12084675-12084694 | Msa0977360:intron | 30.0% | |
| GAAATTGAAGGATTGAAGAT+AGG | + | chr6_4:12084703-12084722 | Msa0977360:intron | 30.0% | |
| TAATCTGATTCAGAAGCTTA+TGG | + | chr6_4:12084748-12084767 | Msa0977360:intron | 30.0% | |
| !! | AAGAGATGGATTTGTTAGTT+TGG | + | chr6_4:12084806-12084825 | Msa0977360:intron | 30.0% |
| !! | TGGATTTGTTAGTTTGGTTA+TGG | + | chr6_4:12084812-12084831 | Msa0977360:intron | 30.0% |
| ! | ATTTGTTAGTTTGGTTATGG+TGG | + | chr6_4:12084815-12084834 | Msa0977360:intron | 30.0% |
| TTGAGTGTGAATTAAACCAT+TGG | + | chr6_4:12084904-12084923 | Msa0977360:intron | 30.0% | |
| AACCATTGGAAAATAGACTT+TGG | + | chr6_4:12084918-12084937 | Msa0977360:intron | 30.0% | |
| ! | TTCCAAAGTCTATTTTCCAA+TGG | - | chr6_4:12084923-12084942 | None:intergenic | 30.0% |
| ! | TTGGAAAATAGACTTTGGAA+TGG | + | chr6_4:12084923-12084942 | Msa0977360:intron | 30.0% |
| ! | TGTTATAATTTTCGGTACAG+TGG | + | chr6_4:12085037-12085056 | Msa0977360:intron | 30.0% |
| TTTCGACAATGATTGAGAAT+CGG | - | chr6_4:12085177-12085196 | None:intergenic | 30.0% | |
| TTCTCAATCATTGTCGAAAA+TGG | + | chr6_4:12085178-12085197 | Msa0977360:CDS | 30.0% | |
| ACAACATTTGGATCTTTATC+TGG | + | chr6_4:12085258-12085277 | Msa0977360:CDS | 30.0% | |
| TGAGATCAAAGCAATAACTA+AGG | - | chr6_4:12085351-12085370 | None:intergenic | 30.0% | |
| !! | ATTTTGACATCACTGAGTAA+AGG | - | chr6_4:12085409-12085428 | None:intergenic | 30.0% |
| TTTACTCAGTGATGTCAAAA+TGG | + | chr6_4:12085408-12085427 | Msa0977360:CDS | 30.0% | |
| TAAGGAGATGTTGTAAGATT+AGG | + | chr6_4:12085641-12085660 | Msa0977360:intron | 30.0% | |
| !! | AAACTTTGAAGTTCCTAAGT+TGG | + | chr6_4:12085808-12085827 | Msa0977360:intron | 30.0% |
| GTTGAACTTGTCATATACAA+AGG | + | chr6_4:12085835-12085854 | Msa0977360:intron | 30.0% | |
| GTCATTTAAGTGACGAAATT+AGG | + | chr6_4:12086005-12086024 | Msa0977360:intron | 30.0% | |
| ATTCATGCATGATAAGTGAA+TGG | + | chr6_4:12086170-12086189 | Msa0977360:intron | 30.0% | |
| TAACAACTGAACAATGTTGA+AGG | - | chr6_4:12086254-12086273 | None:intergenic | 30.0% | |
| ! | TGTCTTTTCACTAGCAATTT+TGG | + | chr6_4:12086361-12086380 | Msa0977360:intron | 30.0% |
| !! | TTGGTTCTGTAACTTCTATT+TGG | + | chr6_4:12086558-12086577 | Msa0977360:intron | 30.0% |
| ATGATATTTGAGAAAGTCTG+TGG | + | chr6_4:12086692-12086711 | Msa0977360:intron | 30.0% | |
| AAAGTCTGTGGTTAAATTTG+TGG | + | chr6_4:12086704-12086723 | Msa0977360:intron | 30.0% | |
| ! | CTATTTTCGTTCCTTTACAA+AGG | + | chr6_4:12086805-12086824 | Msa0977360:intron | 30.0% |
| TGTTGCAGTAGACAAATAAT+TGG | + | chr6_4:12086992-12087011 | Msa0977360:intron | 30.0% | |
| AATACAATACATACGTACTC+AGG | - | chr6_4:12087085-12087104 | None:intergenic | 30.0% | |
| CAAACACTATAGCTATTCTA+TGG | - | chr6_4:12087221-12087240 | None:intergenic | 30.0% | |
| AAATGCCTTACTTATGAGTT+AGG | + | chr6_4:12087328-12087347 | Msa0977360:intron | 30.0% | |
| AAATACTAAACTGACTGCAA+GGG | - | chr6_4:12087517-12087536 | None:intergenic | 30.0% | |
| TAAGTGATACTTCTCTGATA+TGG | - | chr6_4:12087559-12087578 | None:intergenic | 30.0% | |
| TTTACCGTATGCATTCATAT+AGG | + | chr6_4:12087622-12087641 | Msa0977360:intron | 30.0% | |
| TATTCTCAGTATACCTGTAT+AGG | + | chr6_4:12087652-12087671 | Msa0977360:intron | 30.0% | |
| TACTAATGAGTAACCTATAC+AGG | - | chr6_4:12087668-12087687 | None:intergenic | 30.0% | |
| CCAAAAAACTGATCAATTAC+TGG | - | chr6_4:12087767-12087786 | None:intergenic | 30.0% | |
| !!! | CCAGTAATTGATCAGTTTTT+TGG | + | chr6_4:12087764-12087783 | Msa0977360:intron | 30.0% |
| !!! | TAATTGATCAGTTTTTTGGG+TGG | + | chr6_4:12087768-12087787 | Msa0977360:intron | 30.0% |
| !!! | AATTGATCAGTTTTTTGGGT+GGG | + | chr6_4:12087769-12087788 | Msa0977360:intron | 30.0% |
| AGTTTCAATTTAGTGAGTGT+TGG | + | chr6_4:12087867-12087886 | Msa0977360:intron | 30.0% | |
| !!! | TTTTCTTTTTGGAATCCAGA+TGG | + | chr6_4:12088163-12088182 | Msa0977360:intron | 30.0% |
| !!! | TTTCTTTTTGGAATCCAGAT+GGG | + | chr6_4:12088164-12088183 | Msa0977360:intron | 30.0% |
| ! | ATTCATTTTGTGTATGCTAC+AGG | + | chr6_4:12088370-12088389 | Msa0977360:intron | 30.0% |
| TAAAGAAAAAGCTCTCATGT+TGG | + | chr6_4:12088453-12088472 | Msa0977360:CDS | 30.0% | |
| ! | GGATTTTGGACTATAACTCT+CGG | - | chr6_4:12084422-12084441 | None:intergenic | 35.0% |
| GTTCATTAACGAGGAAAAGA+GGG | - | chr6_4:12084522-12084541 | None:intergenic | 35.0% | |
| ATTGAAGATAGGCTAAGACT+TGG | + | chr6_4:12084714-12084733 | Msa0977360:intron | 35.0% | |
| TTGTATTCCATTCAGGAAGT+TGG | - | chr6_4:12085242-12085261 | None:intergenic | 35.0% | |
| CCAAATGTTGTATTCCATTC+AGG | - | chr6_4:12085249-12085268 | None:intergenic | 35.0% | |
| CCTGAATGGAATACAACATT+TGG | + | chr6_4:12085246-12085265 | Msa0977360:CDS | 35.0% | |
| AGCAAGAAACAAAGACAACT+CGG | - | chr6_4:12085311-12085330 | None:intergenic | 35.0% | |
| AAAATGGAACACACAGGTAT+CGG | + | chr6_4:12085424-12085443 | Msa0977360:CDS | 35.0% | |
| ! | AGGGAGTTCTAATTCTTTGA+AGG | + | chr6_4:12085459-12085478 | Msa0977360:CDS | 35.0% |
| AACAGAGAGACTTCAATTGA+GGG | - | chr6_4:12085501-12085520 | None:intergenic | 35.0% | |
| AAACAGAGAGACTTCAATTG+AGG | - | chr6_4:12085502-12085521 | None:intergenic | 35.0% | |
| TCAATTGAAGTCTCTCTGTT+TGG | + | chr6_4:12085501-12085520 | Msa0977360:CDS | 35.0% | |
| ! | TTCTTCCATTTTCCCCAATT+TGG | + | chr6_4:12085564-12085583 | Msa0977360:CDS | 35.0% |
| AAATCAAGCAGCTCCAAATT+GGG | - | chr6_4:12085580-12085599 | None:intergenic | 35.0% | |
| GGTTGTGATCAAATATCTCA+AGG | + | chr6_4:12085604-12085623 | Msa0977360:CDS | 35.0% | |
| TGTTCAAGAGTGAATCTACT+TGG | + | chr6_4:12085782-12085801 | Msa0977360:intron | 35.0% | |
| GTTCAAGAGTGAATCTACTT+GGG | + | chr6_4:12085783-12085802 | Msa0977360:intron | 35.0% | |
| TCATCTCAAAGAATTGTCCT+GGG | + | chr6_4:12085879-12085898 | Msa0977360:intron | 35.0% | |
| CTTCAAATCCTTTCAGTGAT+CGG | + | chr6_4:12086298-12086317 | Msa0977360:intron | 35.0% | |
| GCATACACTACAAAAGATGA+TGG | - | chr6_4:12086335-12086354 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGTTGTTGGAAT+TGG | + | chr6_4:12086417-12086436 | Msa0977360:intron | 35.0% |
| !! | TATTTGGTGTTGTAGTCTAG+TGG | + | chr6_4:12086574-12086593 | Msa0977360:intron | 35.0% |
| ! | TCGTTCCTTTACAAAGGTTT+TGG | + | chr6_4:12086811-12086830 | Msa0977360:intron | 35.0% |
| TGTCACCAAAACCTTTGTAA+AGG | - | chr6_4:12086819-12086838 | None:intergenic | 35.0% | |
| ATAACACAACTATGGTTCCT+AGG | - | chr6_4:12087149-12087168 | None:intergenic | 35.0% | |
| TTCGTGATATCCTACACTAT+TGG | + | chr6_4:12087172-12087191 | Msa0977360:intron | 35.0% | |
| AGGATCCTAACTCATAAGTA+AGG | - | chr6_4:12087336-12087355 | None:intergenic | 35.0% | |
| !! | ATTTCTTTTGGGAAATGGAG+AGG | - | chr6_4:12087356-12087375 | None:intergenic | 35.0% |
| !! | CCTCAATTTCTTTTGGGAAA+TGG | - | chr6_4:12087361-12087380 | None:intergenic | 35.0% |
| CCATTTCCCAAAAGAAATTG+AGG | + | chr6_4:12087358-12087377 | Msa0977360:intron | 35.0% | |
| ! | TGGACACCTCAATTTCTTTT+GGG | - | chr6_4:12087367-12087386 | None:intergenic | 35.0% |
| ! | ATGGACACCTCAATTTCTTT+TGG | - | chr6_4:12087368-12087387 | None:intergenic | 35.0% |
| CAAATACTAAACTGACTGCA+AGG | - | chr6_4:12087518-12087537 | None:intergenic | 35.0% | |
| TGCATACGGTAAATTCAGTT+TGG | - | chr6_4:12087615-12087634 | None:intergenic | 35.0% | |
| CACACCTATATGAATGCATA+CGG | - | chr6_4:12087629-12087648 | None:intergenic | 35.0% | |
| !!! | ATTGATCAGTTTTTTGGGTG+GGG | + | chr6_4:12087770-12087789 | Msa0977360:intron | 35.0% |
| AGTGGTACAACAACAAAAAG+TGG | - | chr6_4:12088064-12088083 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTGGAATCCAGATG+GGG | + | chr6_4:12088165-12088184 | Msa0977360:intron | 35.0% |
| !!! | GGTGTTTATTTTTGCAGTTG+TGG | + | chr6_4:12088284-12088303 | Msa0977360:intron | 35.0% |
| TGGACTTGTGGTTGTTAATT+GGG | + | chr6_4:12088304-12088323 | Msa0977360:intron | 35.0% | |
| AGCAATCTTATCATGATCTC+CGG | - | chr6_4:12088404-12088423 | None:intergenic | 35.0% | |
| ! | GGATTTTGGACTATAACTCT+CGG | - | chr6_4:12084422-12084441 | None:intergenic | 35.0% |
| GTTCATTAACGAGGAAAAGA+GGG | - | chr6_4:12084522-12084541 | None:intergenic | 35.0% | |
| ATTGAAGATAGGCTAAGACT+TGG | + | chr6_4:12084714-12084733 | Msa0977360:intron | 35.0% | |
| TTGTATTCCATTCAGGAAGT+TGG | - | chr6_4:12085242-12085261 | None:intergenic | 35.0% | |
| CCAAATGTTGTATTCCATTC+AGG | - | chr6_4:12085249-12085268 | None:intergenic | 35.0% | |
| CCTGAATGGAATACAACATT+TGG | + | chr6_4:12085246-12085265 | Msa0977360:CDS | 35.0% | |
| AGCAAGAAACAAAGACAACT+CGG | - | chr6_4:12085311-12085330 | None:intergenic | 35.0% | |
| AAAATGGAACACACAGGTAT+CGG | + | chr6_4:12085424-12085443 | Msa0977360:CDS | 35.0% | |
| ! | AGGGAGTTCTAATTCTTTGA+AGG | + | chr6_4:12085459-12085478 | Msa0977360:CDS | 35.0% |
| AACAGAGAGACTTCAATTGA+GGG | - | chr6_4:12085501-12085520 | None:intergenic | 35.0% | |
| AAACAGAGAGACTTCAATTG+AGG | - | chr6_4:12085502-12085521 | None:intergenic | 35.0% | |
| TCAATTGAAGTCTCTCTGTT+TGG | + | chr6_4:12085501-12085520 | Msa0977360:CDS | 35.0% | |
| ! | TTCTTCCATTTTCCCCAATT+TGG | + | chr6_4:12085564-12085583 | Msa0977360:CDS | 35.0% |
| AAATCAAGCAGCTCCAAATT+GGG | - | chr6_4:12085580-12085599 | None:intergenic | 35.0% | |
| GGTTGTGATCAAATATCTCA+AGG | + | chr6_4:12085604-12085623 | Msa0977360:CDS | 35.0% | |
| TGTTCAAGAGTGAATCTACT+TGG | + | chr6_4:12085782-12085801 | Msa0977360:intron | 35.0% | |
| GTTCAAGAGTGAATCTACTT+GGG | + | chr6_4:12085783-12085802 | Msa0977360:intron | 35.0% | |
| TCATCTCAAAGAATTGTCCT+GGG | + | chr6_4:12085879-12085898 | Msa0977360:intron | 35.0% | |
| CTTCAAATCCTTTCAGTGAT+CGG | + | chr6_4:12086298-12086317 | Msa0977360:intron | 35.0% | |
| GCATACACTACAAAAGATGA+TGG | - | chr6_4:12086335-12086354 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGTTGTTGGAAT+TGG | + | chr6_4:12086417-12086436 | Msa0977360:intron | 35.0% |
| !! | TATTTGGTGTTGTAGTCTAG+TGG | + | chr6_4:12086574-12086593 | Msa0977360:intron | 35.0% |
| ! | TCGTTCCTTTACAAAGGTTT+TGG | + | chr6_4:12086811-12086830 | Msa0977360:intron | 35.0% |
| TGTCACCAAAACCTTTGTAA+AGG | - | chr6_4:12086819-12086838 | None:intergenic | 35.0% | |
| ATAACACAACTATGGTTCCT+AGG | - | chr6_4:12087149-12087168 | None:intergenic | 35.0% | |
| TTCGTGATATCCTACACTAT+TGG | + | chr6_4:12087172-12087191 | Msa0977360:intron | 35.0% | |
| AGGATCCTAACTCATAAGTA+AGG | - | chr6_4:12087336-12087355 | None:intergenic | 35.0% | |
| !! | ATTTCTTTTGGGAAATGGAG+AGG | - | chr6_4:12087356-12087375 | None:intergenic | 35.0% |
| !! | CCTCAATTTCTTTTGGGAAA+TGG | - | chr6_4:12087361-12087380 | None:intergenic | 35.0% |
| CCATTTCCCAAAAGAAATTG+AGG | + | chr6_4:12087358-12087377 | Msa0977360:intron | 35.0% | |
| ! | TGGACACCTCAATTTCTTTT+GGG | - | chr6_4:12087367-12087386 | None:intergenic | 35.0% |
| ! | ATGGACACCTCAATTTCTTT+TGG | - | chr6_4:12087368-12087387 | None:intergenic | 35.0% |
| CAAATACTAAACTGACTGCA+AGG | - | chr6_4:12087518-12087537 | None:intergenic | 35.0% | |
| TGCATACGGTAAATTCAGTT+TGG | - | chr6_4:12087615-12087634 | None:intergenic | 35.0% | |
| CACACCTATATGAATGCATA+CGG | - | chr6_4:12087629-12087648 | None:intergenic | 35.0% | |
| !!! | ATTGATCAGTTTTTTGGGTG+GGG | + | chr6_4:12087770-12087789 | Msa0977360:intron | 35.0% |
| AGTGGTACAACAACAAAAAG+TGG | - | chr6_4:12088064-12088083 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTGGAATCCAGATG+GGG | + | chr6_4:12088165-12088184 | Msa0977360:intron | 35.0% |
| !!! | GGTGTTTATTTTTGCAGTTG+TGG | + | chr6_4:12088284-12088303 | Msa0977360:intron | 35.0% |
| TGGACTTGTGGTTGTTAATT+GGG | + | chr6_4:12088304-12088323 | Msa0977360:intron | 35.0% | |
| AGCAATCTTATCATGATCTC+CGG | - | chr6_4:12088404-12088423 | None:intergenic | 35.0% | |
| CGTTCATTAACGAGGAAAAG+AGG | - | chr6_4:12084523-12084542 | None:intergenic | 40.0% | |
| TTCATACACTTCCATGGAGA+AGG | - | chr6_4:12084570-12084589 | None:intergenic | 40.0% | |
| AGAGAAACTTGAGCTTACCT+TGG | - | chr6_4:12084594-12084613 | None:intergenic | 40.0% | |
| CTGCACAAGTATTTACGACT+AGG | - | chr6_4:12084875-12084894 | None:intergenic | 40.0% | |
| CTAGTCGTAAATACTTGTGC+AGG | + | chr6_4:12084873-12084892 | Msa0977360:intron | 40.0% | |
| CAAACAGTTCCTCTCTATCT+CGG | + | chr6_4:12085144-12085163 | Msa0977360:intron | 40.0% | |
| CAATGATTGAGAATCGGAGA+CGG | - | chr6_4:12085171-12085190 | None:intergenic | 40.0% | |
| ! | GAGTTGTCTTTGTTTCTTGC+TGG | + | chr6_4:12085310-12085329 | Msa0977360:CDS | 40.0% |
| GATGTCAAAATGGAACACAC+AGG | + | chr6_4:12085418-12085437 | Msa0977360:CDS | 40.0% | |
| AAATGGAACACACAGGTATC+GGG | + | chr6_4:12085425-12085444 | Msa0977360:CDS | 40.0% | |
| AATCAAGCAGCTCCAAATTG+GGG | - | chr6_4:12085579-12085598 | None:intergenic | 40.0% | |
| CAAATCAAGCAGCTCCAAAT+TGG | - | chr6_4:12085581-12085600 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTTCCTAAGTTGG+AGG | + | chr6_4:12085811-12085830 | Msa0977360:intron | 40.0% |
| AAGTTCAACACCTCCAACTT+AGG | - | chr6_4:12085824-12085843 | None:intergenic | 40.0% | |
| GTCATCTCAAAGAATTGTCC+TGG | + | chr6_4:12085878-12085897 | Msa0977360:intron | 40.0% | |
| ! | AAAGAATTGTCCTGGGCTTT+TGG | + | chr6_4:12085886-12085905 | Msa0977360:intron | 40.0% |
| TGTCAAGATATCACACCAGA+AGG | + | chr6_4:12085926-12085945 | Msa0977360:intron | 40.0% | |
| CGATCACTGAAAGGATTTGA+AGG | - | chr6_4:12086300-12086319 | None:intergenic | 40.0% | |
| TGCGATCAAACATAAGCAAG+CGG | - | chr6_4:12086463-12086482 | None:intergenic | 40.0% | |
| TGTTGTAGTCTAGTGGTAGT+TGG | + | chr6_4:12086581-12086600 | Msa0977360:intron | 40.0% | |
| CTGCTGCATATGATCTGTTT+GGG | + | chr6_4:12087027-12087046 | Msa0977360:intron | 40.0% | |
| GCTGTCTCAAAGGAAATACA+AGG | - | chr6_4:12087063-12087082 | None:intergenic | 40.0% | |
| TACTGTGTTGTAGACTACCT+AGG | + | chr6_4:12087129-12087148 | Msa0977360:intron | 40.0% | |
| ACGTGCATAACCAATAGTGT+AGG | - | chr6_4:12087185-12087204 | None:intergenic | 40.0% | |
| !! | CTGTTGGCTTAATTAAAGGC+AGG | + | chr6_4:12087276-12087295 | Msa0977360:intron | 40.0% |
| GGGAAATGAGGCAAATAACA+AGG | - | chr6_4:12087497-12087516 | None:intergenic | 40.0% | |
| CAGTCAGTTTAGTATTTGCC+AGG | + | chr6_4:12087520-12087539 | Msa0977360:intron | 40.0% | |
| !! | TATGGCTTTGAAGCTTATCC+TGG | - | chr6_4:12087541-12087560 | None:intergenic | 40.0% |
| GATAAAGAAGAGTAGTGACG+AGG | - | chr6_4:12088011-12088030 | None:intergenic | 40.0% | |
| ! | CGCAACAACTTGTTCATTTG+GGG | - | chr6_4:12088041-12088060 | None:intergenic | 40.0% |
| ! | GCGCAACAACTTGTTCATTT+GGG | - | chr6_4:12088042-12088061 | None:intergenic | 40.0% |
| AAAGAAAGTCTGTGTGGTAG+TGG | - | chr6_4:12088082-12088101 | None:intergenic | 40.0% | |
| CGTTTCTATCATCGAAGTTC+TGG | + | chr6_4:12088248-12088267 | Msa0977360:intron | 40.0% | |
| ! | ATCATCGAAGTTCTGGTATC+TGG | + | chr6_4:12088255-12088274 | Msa0977360:intron | 40.0% |
| ! | TTTTTGCAGTTGTGGACTTG+TGG | + | chr6_4:12088292-12088311 | Msa0977360:intron | 40.0% |
| GTGGACTTGTGGTTGTTAAT+TGG | + | chr6_4:12088303-12088322 | Msa0977360:intron | 40.0% | |
| TTGTGGTTGTTAATTGGGTG+TGG | + | chr6_4:12088309-12088328 | Msa0977360:intron | 40.0% | |
| TGTGGTTGTTAATTGGGTGT+GGG | + | chr6_4:12088310-12088329 | Msa0977360:intron | 40.0% | |
| CGTTCATTAACGAGGAAAAG+AGG | - | chr6_4:12084523-12084542 | None:intergenic | 40.0% | |
| TTCATACACTTCCATGGAGA+AGG | - | chr6_4:12084570-12084589 | None:intergenic | 40.0% | |
| AGAGAAACTTGAGCTTACCT+TGG | - | chr6_4:12084594-12084613 | None:intergenic | 40.0% | |
| CTGCACAAGTATTTACGACT+AGG | - | chr6_4:12084875-12084894 | None:intergenic | 40.0% | |
| CTAGTCGTAAATACTTGTGC+AGG | + | chr6_4:12084873-12084892 | Msa0977360:intron | 40.0% | |
| CAAACAGTTCCTCTCTATCT+CGG | + | chr6_4:12085144-12085163 | Msa0977360:intron | 40.0% | |
| CAATGATTGAGAATCGGAGA+CGG | - | chr6_4:12085171-12085190 | None:intergenic | 40.0% | |
| ! | GAGTTGTCTTTGTTTCTTGC+TGG | + | chr6_4:12085310-12085329 | Msa0977360:CDS | 40.0% |
| GATGTCAAAATGGAACACAC+AGG | + | chr6_4:12085418-12085437 | Msa0977360:CDS | 40.0% | |
| AAATGGAACACACAGGTATC+GGG | + | chr6_4:12085425-12085444 | Msa0977360:CDS | 40.0% | |
| AATCAAGCAGCTCCAAATTG+GGG | - | chr6_4:12085579-12085598 | None:intergenic | 40.0% | |
| CAAATCAAGCAGCTCCAAAT+TGG | - | chr6_4:12085581-12085600 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTTCCTAAGTTGG+AGG | + | chr6_4:12085811-12085830 | Msa0977360:intron | 40.0% |
| AAGTTCAACACCTCCAACTT+AGG | - | chr6_4:12085824-12085843 | None:intergenic | 40.0% | |
| GTCATCTCAAAGAATTGTCC+TGG | + | chr6_4:12085878-12085897 | Msa0977360:intron | 40.0% | |
| ! | AAAGAATTGTCCTGGGCTTT+TGG | + | chr6_4:12085886-12085905 | Msa0977360:intron | 40.0% |
| TGTCAAGATATCACACCAGA+AGG | + | chr6_4:12085926-12085945 | Msa0977360:intron | 40.0% | |
| CGATCACTGAAAGGATTTGA+AGG | - | chr6_4:12086300-12086319 | None:intergenic | 40.0% | |
| TGCGATCAAACATAAGCAAG+CGG | - | chr6_4:12086463-12086482 | None:intergenic | 40.0% | |
| TGTTGTAGTCTAGTGGTAGT+TGG | + | chr6_4:12086581-12086600 | Msa0977360:intron | 40.0% | |
| CTGCTGCATATGATCTGTTT+GGG | + | chr6_4:12087027-12087046 | Msa0977360:intron | 40.0% | |
| GCTGTCTCAAAGGAAATACA+AGG | - | chr6_4:12087063-12087082 | None:intergenic | 40.0% | |
| TACTGTGTTGTAGACTACCT+AGG | + | chr6_4:12087129-12087148 | Msa0977360:intron | 40.0% | |
| ACGTGCATAACCAATAGTGT+AGG | - | chr6_4:12087185-12087204 | None:intergenic | 40.0% | |
| !! | CTGTTGGCTTAATTAAAGGC+AGG | + | chr6_4:12087276-12087295 | Msa0977360:intron | 40.0% |
| GGGAAATGAGGCAAATAACA+AGG | - | chr6_4:12087497-12087516 | None:intergenic | 40.0% | |
| CAGTCAGTTTAGTATTTGCC+AGG | + | chr6_4:12087520-12087539 | Msa0977360:intron | 40.0% | |
| !! | TATGGCTTTGAAGCTTATCC+TGG | - | chr6_4:12087541-12087560 | None:intergenic | 40.0% |
| GATAAAGAAGAGTAGTGACG+AGG | - | chr6_4:12088011-12088030 | None:intergenic | 40.0% | |
| ! | CGCAACAACTTGTTCATTTG+GGG | - | chr6_4:12088041-12088060 | None:intergenic | 40.0% |
| ! | GCGCAACAACTTGTTCATTT+GGG | - | chr6_4:12088042-12088061 | None:intergenic | 40.0% |
| AAAGAAAGTCTGTGTGGTAG+TGG | - | chr6_4:12088082-12088101 | None:intergenic | 40.0% | |
| CGTTTCTATCATCGAAGTTC+TGG | + | chr6_4:12088248-12088267 | Msa0977360:intron | 40.0% | |
| ! | ATCATCGAAGTTCTGGTATC+TGG | + | chr6_4:12088255-12088274 | Msa0977360:intron | 40.0% |
| ! | TTTTTGCAGTTGTGGACTTG+TGG | + | chr6_4:12088292-12088311 | Msa0977360:intron | 40.0% |
| GTGGACTTGTGGTTGTTAAT+TGG | + | chr6_4:12088303-12088322 | Msa0977360:intron | 40.0% | |
| TTGTGGTTGTTAATTGGGTG+TGG | + | chr6_4:12088309-12088328 | Msa0977360:intron | 40.0% | |
| TGTGGTTGTTAATTGGGTGT+GGG | + | chr6_4:12088310-12088329 | Msa0977360:intron | 40.0% | |
| TTTGGACTATAACTCTCGGC+TGG | - | chr6_4:12084418-12084437 | None:intergenic | 45.0% | |
| ACGTGCAACGTTCATTAACG+AGG | - | chr6_4:12084531-12084550 | None:intergenic | 45.0% | |
| CCATGGAGAAGGAATGCTAA+GGG | - | chr6_4:12084559-12084578 | None:intergenic | 45.0% | |
| TCCATGGAGAAGGAATGCTA+AGG | - | chr6_4:12084560-12084579 | None:intergenic | 45.0% | |
| CTTGGCTTCATACACTTCCA+TGG | - | chr6_4:12084576-12084595 | None:intergenic | 45.0% | |
| ! | CATGGAAGTGTATGAAGCCA+AGG | + | chr6_4:12084574-12084593 | Msa0977360:exon | 45.0% |
| CGAGATAGAGAGGAACTGTT+TGG | - | chr6_4:12085146-12085165 | None:intergenic | 45.0% | |
| AAATGGAACACTTCCTGTCC+TGG | + | chr6_4:12085195-12085214 | Msa0977360:CDS | 45.0% | |
| AGGTTCACCAACTTCCTGAA+TGG | + | chr6_4:12085232-12085251 | Msa0977360:CDS | 45.0% | |
| CAGCTCCAAATTGGGGAAAA+TGG | - | chr6_4:12085572-12085591 | None:intergenic | 45.0% | |
| ! | TTGGAGCTGCTTGATTTGAG+TGG | + | chr6_4:12085583-12085602 | Msa0977360:CDS | 45.0% |
| AGTAGTAGTTCCAAAAGCCC+AGG | - | chr6_4:12085899-12085918 | None:intergenic | 45.0% | |
| ACCAGAAGGAGTGAAACATG+TGG | + | chr6_4:12085940-12085959 | Msa0977360:intron | 45.0% | |
| ACCACATGTTTCACTCCTTC+TGG | - | chr6_4:12085944-12085963 | None:intergenic | 45.0% | |
| TCTAGCAACCGATCACTGAA+AGG | - | chr6_4:12086309-12086328 | None:intergenic | 45.0% | |
| CCAAACAGATCATATGCAGC+AGG | - | chr6_4:12087029-12087048 | None:intergenic | 45.0% | |
| CCTGCTGCATATGATCTGTT+TGG | + | chr6_4:12087026-12087045 | Msa0977360:intron | 45.0% | |
| AACTGACTGCAAGGGAAATG+AGG | - | chr6_4:12087509-12087528 | None:intergenic | 45.0% | |
| TATGTGCTCTATAACAGCCG+CGG | - | chr6_4:12087808-12087827 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGATTTTGTCA+TGG | + | chr6_4:12087897-12087916 | Msa0977360:intron | 45.0% |
| CAATTTATGGGGCTGCTGAT+TGG | + | chr6_4:12087966-12087985 | Msa0977360:intron | 45.0% | |
| ! | GGCGCAACAACTTGTTCATT+TGG | - | chr6_4:12088043-12088062 | None:intergenic | 45.0% |
| TGTGCGAAAGAAAGTCTGTG+TGG | - | chr6_4:12088088-12088107 | None:intergenic | 45.0% | |
| !! | AAGTTCTGGTATCTGGCTCT+TGG | + | chr6_4:12088262-12088281 | Msa0977360:intron | 45.0% |
| !! | AGTTCTGGTATCTGGCTCTT+GGG | + | chr6_4:12088263-12088282 | Msa0977360:intron | 45.0% |
| ! | TTTTGTGTATGCTACAGGCC+AGG | + | chr6_4:12088375-12088394 | Msa0977360:intron | 45.0% |
| TATCATGATCTCCGGTAACC+TGG | - | chr6_4:12088396-12088415 | None:intergenic | 45.0% | |
| TTTGGACTATAACTCTCGGC+TGG | - | chr6_4:12084418-12084437 | None:intergenic | 45.0% | |
| ACGTGCAACGTTCATTAACG+AGG | - | chr6_4:12084531-12084550 | None:intergenic | 45.0% | |
| CCATGGAGAAGGAATGCTAA+GGG | - | chr6_4:12084559-12084578 | None:intergenic | 45.0% | |
| TCCATGGAGAAGGAATGCTA+AGG | - | chr6_4:12084560-12084579 | None:intergenic | 45.0% | |
| CTTGGCTTCATACACTTCCA+TGG | - | chr6_4:12084576-12084595 | None:intergenic | 45.0% | |
| ! | CATGGAAGTGTATGAAGCCA+AGG | + | chr6_4:12084574-12084593 | Msa0977360:exon | 45.0% |
| CGAGATAGAGAGGAACTGTT+TGG | - | chr6_4:12085146-12085165 | None:intergenic | 45.0% | |
| AAATGGAACACTTCCTGTCC+TGG | + | chr6_4:12085195-12085214 | Msa0977360:CDS | 45.0% | |
| AGGTTCACCAACTTCCTGAA+TGG | + | chr6_4:12085232-12085251 | Msa0977360:CDS | 45.0% | |
| CAGCTCCAAATTGGGGAAAA+TGG | - | chr6_4:12085572-12085591 | None:intergenic | 45.0% | |
| ! | TTGGAGCTGCTTGATTTGAG+TGG | + | chr6_4:12085583-12085602 | Msa0977360:CDS | 45.0% |
| AGTAGTAGTTCCAAAAGCCC+AGG | - | chr6_4:12085899-12085918 | None:intergenic | 45.0% | |
| ACCAGAAGGAGTGAAACATG+TGG | + | chr6_4:12085940-12085959 | Msa0977360:intron | 45.0% | |
| ACCACATGTTTCACTCCTTC+TGG | - | chr6_4:12085944-12085963 | None:intergenic | 45.0% | |
| TCTAGCAACCGATCACTGAA+AGG | - | chr6_4:12086309-12086328 | None:intergenic | 45.0% | |
| CCAAACAGATCATATGCAGC+AGG | - | chr6_4:12087029-12087048 | None:intergenic | 45.0% | |
| CCTGCTGCATATGATCTGTT+TGG | + | chr6_4:12087026-12087045 | Msa0977360:intron | 45.0% | |
| AACTGACTGCAAGGGAAATG+AGG | - | chr6_4:12087509-12087528 | None:intergenic | 45.0% | |
| TATGTGCTCTATAACAGCCG+CGG | - | chr6_4:12087808-12087827 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGATTTTGTCA+TGG | + | chr6_4:12087897-12087916 | Msa0977360:intron | 45.0% |
| CAATTTATGGGGCTGCTGAT+TGG | + | chr6_4:12087966-12087985 | Msa0977360:intron | 45.0% | |
| ! | GGCGCAACAACTTGTTCATT+TGG | - | chr6_4:12088043-12088062 | None:intergenic | 45.0% |
| TGTGCGAAAGAAAGTCTGTG+TGG | - | chr6_4:12088088-12088107 | None:intergenic | 45.0% | |
| !! | AAGTTCTGGTATCTGGCTCT+TGG | + | chr6_4:12088262-12088281 | Msa0977360:intron | 45.0% |
| !! | AGTTCTGGTATCTGGCTCTT+GGG | + | chr6_4:12088263-12088282 | Msa0977360:intron | 45.0% |
| ! | TTTTGTGTATGCTACAGGCC+AGG | + | chr6_4:12088375-12088394 | Msa0977360:intron | 45.0% |
| TATCATGATCTCCGGTAACC+TGG | - | chr6_4:12088396-12088415 | None:intergenic | 45.0% | |
| !!! | TATAGTTTTAAAATAATAAA+AGG | + | chr6_4:12087391-12087410 | Msa0977360:intron | 5.0% |
| !!! | ATAGTTTTAAAATAATAAAA+GGG | + | chr6_4:12087392-12087411 | Msa0977360:intron | 5.0% |
| !!! | ATTTTATACATATATTAATT+AGG | - | chr6_4:12088144-12088163 | None:intergenic | 5.0% |
| !!! | TATAGTTTTAAAATAATAAA+AGG | + | chr6_4:12087391-12087410 | Msa0977360:intron | 5.0% |
| !!! | ATAGTTTTAAAATAATAAAA+GGG | + | chr6_4:12087392-12087411 | Msa0977360:intron | 5.0% |
| !!! | ATTTTATACATATATTAATT+AGG | - | chr6_4:12088144-12088163 | None:intergenic | 5.0% |
| TCGGCTGGAAGACAGAGAAA+GGG | - | chr6_4:12084403-12084422 | None:intergenic | 50.0% | |
| CCCTTAGCATTCCTTCTCCA+TGG | + | chr6_4:12084556-12084575 | Msa0977360:exon | 50.0% | |
| GAGGAACTGTTTGGAGACGA+GGG | - | chr6_4:12085137-12085156 | None:intergenic | 50.0% | |
| AGAGGAACTGTTTGGAGACG+AGG | - | chr6_4:12085138-12085157 | None:intergenic | 50.0% | |
| GTATCGGGAAAGTGAGTGCA+GGG | + | chr6_4:12085440-12085459 | Msa0977360:CDS | 50.0% | |
| !! | GAAGGGCGTTGAGTTTGTGT+GGG | - | chr6_4:12086224-12086243 | None:intergenic | 50.0% |
| !! | TGAAGGGCGTTGAGTTTGTG+TGG | - | chr6_4:12086225-12086244 | None:intergenic | 50.0% |
| GACTTTCACCTCAACCACAC+AGG | + | chr6_4:12086657-12086676 | Msa0977360:intron | 50.0% | |
| CCTCAACCACACAGGAGAAT+CGG | + | chr6_4:12086665-12086684 | Msa0977360:intron | 50.0% | |
| CTCAACCACACAGGAGAATC+GGG | + | chr6_4:12086666-12086685 | Msa0977360:intron | 50.0% | |
| ATACTCCCGATTCTCCTGTG+TGG | - | chr6_4:12086674-12086693 | None:intergenic | 50.0% | |
| ACGTACTCAGGCTGTCTCAA+AGG | - | chr6_4:12087073-12087092 | None:intergenic | 50.0% | |
| TAGAAGGACACAACCCCATC+TGG | - | chr6_4:12088181-12088200 | None:intergenic | 50.0% | |
| TATGCTACAGGCCAGGTTAC+CGG | + | chr6_4:12088382-12088401 | Msa0977360:intron | 50.0% | |
| TCGGCTGGAAGACAGAGAAA+GGG | - | chr6_4:12084403-12084422 | None:intergenic | 50.0% | |
| CCCTTAGCATTCCTTCTCCA+TGG | + | chr6_4:12084556-12084575 | Msa0977360:exon | 50.0% | |
| GAGGAACTGTTTGGAGACGA+GGG | - | chr6_4:12085137-12085156 | None:intergenic | 50.0% | |
| AGAGGAACTGTTTGGAGACG+AGG | - | chr6_4:12085138-12085157 | None:intergenic | 50.0% | |
| GTATCGGGAAAGTGAGTGCA+GGG | + | chr6_4:12085440-12085459 | Msa0977360:CDS | 50.0% | |
| !! | GAAGGGCGTTGAGTTTGTGT+GGG | - | chr6_4:12086224-12086243 | None:intergenic | 50.0% |
| !! | TGAAGGGCGTTGAGTTTGTG+TGG | - | chr6_4:12086225-12086244 | None:intergenic | 50.0% |
| GACTTTCACCTCAACCACAC+AGG | + | chr6_4:12086657-12086676 | Msa0977360:intron | 50.0% | |
| CCTCAACCACACAGGAGAAT+CGG | + | chr6_4:12086665-12086684 | Msa0977360:intron | 50.0% | |
| CTCAACCACACAGGAGAATC+GGG | + | chr6_4:12086666-12086685 | Msa0977360:intron | 50.0% | |
| ATACTCCCGATTCTCCTGTG+TGG | - | chr6_4:12086674-12086693 | None:intergenic | 50.0% | |
| ACGTACTCAGGCTGTCTCAA+AGG | - | chr6_4:12087073-12087092 | None:intergenic | 50.0% | |
| TAGAAGGACACAACCCCATC+TGG | - | chr6_4:12088181-12088200 | None:intergenic | 50.0% | |
| TATGCTACAGGCCAGGTTAC+CGG | + | chr6_4:12088382-12088401 | Msa0977360:intron | 50.0% | |
| CTCGGCTGGAAGACAGAGAA+AGG | - | chr6_4:12084404-12084423 | None:intergenic | 55.0% | |
| ! | GGTATCGGGAAAGTGAGTGC+AGG | + | chr6_4:12085439-12085458 | Msa0977360:CDS | 55.0% |
| CCGATTCTCCTGTGTGGTTG+AGG | - | chr6_4:12086668-12086687 | None:intergenic | 55.0% | |
| TGGGGTTTACTGCATTGCCG+CGG | + | chr6_4:12087788-12087807 | Msa0977360:intron | 55.0% | |
| ! | GGGGCTGCTGATTGGTAGAA+AGG | + | chr6_4:12087974-12087993 | Msa0977360:intron | 55.0% |
| CTCGGCTGGAAGACAGAGAA+AGG | - | chr6_4:12084404-12084423 | None:intergenic | 55.0% | |
| ! | GGTATCGGGAAAGTGAGTGC+AGG | + | chr6_4:12085439-12085458 | Msa0977360:CDS | 55.0% |
| CCGATTCTCCTGTGTGGTTG+AGG | - | chr6_4:12086668-12086687 | None:intergenic | 55.0% | |
| TGGGGTTTACTGCATTGCCG+CGG | + | chr6_4:12087788-12087807 | Msa0977360:intron | 55.0% | |
| ! | GGGGCTGCTGATTGGTAGAA+AGG | + | chr6_4:12087974-12087993 | Msa0977360:intron | 55.0% |
| GGAGACGGTCCGAGATAGAG+AGG | - | chr6_4:12085156-12085175 | None:intergenic | 60.0% | |
| !! | AGTTGGTGAACCTCCCGAGG+AGG | - | chr6_4:12085225-12085244 | None:intergenic | 60.0% |
| !! | GGAAGTTGGTGAACCTCCCG+AGG | - | chr6_4:12085228-12085247 | None:intergenic | 60.0% |
| GGAGACGGTCCGAGATAGAG+AGG | - | chr6_4:12085156-12085175 | None:intergenic | 60.0% | |
| !! | AGTTGGTGAACCTCCCGAGG+AGG | - | chr6_4:12085225-12085244 | None:intergenic | 60.0% |
| !! | GGAAGTTGGTGAACCTCCCG+AGG | - | chr6_4:12085228-12085247 | None:intergenic | 60.0% |
| CCTGTCCTGGATCGCCTCCT+CGG | + | chr6_4:12085208-12085227 | Msa0977360:CDS | 65.0% | |
| CTGTCCTGGATCGCCTCCTC+GGG | + | chr6_4:12085209-12085228 | Msa0977360:CDS | 65.0% | |
| CCTGTCCTGGATCGCCTCCT+CGG | + | chr6_4:12085208-12085227 | Msa0977360:CDS | 65.0% | |
| CTGTCCTGGATCGCCTCCTC+GGG | + | chr6_4:12085209-12085228 | Msa0977360:CDS | 65.0% | |
| CCGAGGAGGCGATCCAGGAC+AGG | - | chr6_4:12085211-12085230 | None:intergenic | 70.0% | |
| TCCTGGATCGCCTCCTCGGG+AGG | + | chr6_4:12085212-12085231 | Msa0977360:CDS | 70.0% | |
| ACCTCCCGAGGAGGCGATCC+AGG | - | chr6_4:12085216-12085235 | None:intergenic | 70.0% | |
| CCGAGGAGGCGATCCAGGAC+AGG | - | chr6_4:12085211-12085230 | None:intergenic | 70.0% | |
| TCCTGGATCGCCTCCTCGGG+AGG | + | chr6_4:12085212-12085231 | Msa0977360:CDS | 70.0% | |
| ACCTCCCGAGGAGGCGATCC+AGG | - | chr6_4:12085216-12085235 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 12084400 | 12088480 | 12084400 | ID=Msa0977360;Name=Msa0977360 |
| chr6_4 | mRNA | 12084400 | 12088480 | 12084400 | ID=Msa0977360-mRNA-1;Parent=Msa0977360;Name=Msa0977360-mRNA-1;_AED=0.70;_eAED=0.70;_QI=175|0|0.33|0.33|1|1|3|0|194 |
| chr6_4 | exon | 12084400 | 12084595 | 12084400 | ID=Msa0977360-mRNA-1:exon:4256;Parent=Msa0977360-mRNA-1 |
| chr6_4 | exon | 12085151 | 12085625 | 12085151 | ID=Msa0977360-mRNA-1:exon:4257;Parent=Msa0977360-mRNA-1 |
| chr6_4 | exon | 12088392 | 12088480 | 12088392 | ID=Msa0977360-mRNA-1:exon:4258;Parent=Msa0977360-mRNA-1 |
| chr6_4 | five_prime_UTR | 12084400 | 12084574 | 12084400 | ID=Msa0977360-mRNA-1:five_prime_utr;Parent=Msa0977360-mRNA-1 |
| chr6_4 | CDS | 12084575 | 12084595 | 12084575 | ID=Msa0977360-mRNA-1:cds;Parent=Msa0977360-mRNA-1 |
| chr6_4 | CDS | 12085151 | 12085625 | 12085151 | ID=Msa0977360-mRNA-1:cds;Parent=Msa0977360-mRNA-1 |
| chr6_4 | CDS | 12088392 | 12088480 | 12088392 | ID=Msa0977360-mRNA-1:cds;Parent=Msa0977360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
