Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978680 | XP_003618748.1 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 2.34e-115 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978680 | G7KMS6 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 1.12e-115 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746220 | Msa0978680 | 0.896589 | 3.192441e-76 | -8.615850e-47 |
| Msa0876340 | Msa0978680 | 0.851986 | 6.206319e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978680 | MtrunA17_Chr6g0457561 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 2.16e-119 | 334 |
| Msa0978680 | MtrunA17_Chr8g0391011 | 49.669 | 151 | 65 | 4 | 28 | 168 | 11 | 160 | 4.27e-35 | 120 |
| Msa0978680 | MtrunA17_Chr1g0209811 | 46.203 | 158 | 68 | 5 | 27 | 168 | 4 | 160 | 1.56e-31 | 111 |
| Msa0978680 | MtrunA17_Chr6g0484481 | 42.697 | 178 | 81 | 7 | 1 | 168 | 1 | 167 | 3.51e-30 | 108 |
| Msa0978680 | MtrunA17_Chr4g0045631 | 44.318 | 176 | 55 | 5 | 1 | 168 | 1 | 141 | 1.96e-28 | 102 |
| Msa0978680 | MtrunA17_Chr1g0171841 | 43.243 | 185 | 57 | 6 | 1 | 168 | 1 | 154 | 2.40e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978680 | AT5G16110.1 | 53.005 | 183 | 66 | 5 | 1 | 168 | 67 | 244 | 4.51e-50 | 161 |
| Msa0978680 | AT3G02555.2 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.37e-44 | 144 |
| Msa0978680 | AT3G02555.1 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.37e-44 | 144 |
| Msa0978680 | AT1G68490.1 | 46.486 | 185 | 80 | 9 | 1 | 168 | 1 | 183 | 2.13e-40 | 135 |
| Msa0978680 | AT1G13390.1 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.92e-32 | 113 |
| Msa0978680 | AT1G13390.2 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.92e-32 | 113 |
Find 73 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCGGGATGCAGAATT+TGG | 0.163389 | 6_4:+14714455 | None:intergenic |
| ATGGCTTATTATATATTTAA+TGG | 0.180904 | 6_4:-14714003 | Msa0978680:three_prime_UTR |
| GTATAGAGAGTTGGTGATTT+TGG | 0.220921 | 6_4:-14714065 | Msa0978680:three_prime_UTR |
| TGCATGACCTAATGGTTTAT+AGG | 0.293597 | 6_4:-14713943 | Msa0978680:three_prime_UTR |
| CAGCAGGGACGCTTGAATTC+TGG | 0.294975 | 6_4:+14714354 | None:intergenic |
| CCGGCTGCCGTTAGAGTAGA+AGG | 0.314222 | 6_4:-14714401 | Msa0978680:CDS |
| CCTAACACATCCACCTTTGC+GGG | 0.345952 | 6_4:+14714442 | None:intergenic |
| TTGGTCCAGGATGCTCGATT+TGG | 0.359597 | 6_4:-14714518 | Msa0978680:CDS |
| TTTCCGTGTCTCCACCGGTC+AGG | 0.370731 | 6_4:-14714553 | Msa0978680:CDS |
| AAGGGTTCGACTGCCTCAAC+AGG | 0.387499 | 6_4:-14714382 | Msa0978680:CDS |
| AATTGATCCTATAAACCATT+AGG | 0.396624 | 6_4:+14713936 | None:intergenic |
| GGATGTGTTAGGATGAGTTT+TGG | 0.398776 | 6_4:-14714431 | Msa0978680:CDS |
| AAAATATCTTGAGTAGTTTG+AGG | 0.405685 | 6_4:-14714229 | Msa0978680:three_prime_UTR |
| ATGCCATTTGCATGACCTAA+TGG | 0.405687 | 6_4:-14713951 | Msa0978680:three_prime_UTR |
| GTCCTAAGCCACGACGAGTC+GGG | 0.412417 | 6_4:-14715758 | Msa0978680:CDS |
| TTTATATACACTTCTCTGAA+TGG | 0.415088 | 6_4:+14714319 | None:intergenic |
| TTCCGTGTCTCCACCGGTCA+GGG | 0.433361 | 6_4:-14714552 | Msa0978680:CDS |
| CCCGCAAAGGTGGATGTGTT+AGG | 0.445900 | 6_4:-14714442 | Msa0978680:CDS |
| GAGAGAGAGATTAACCTTGA+GGG | 0.463059 | 6_4:+14716661 | None:intergenic |
| GTAGTTTGAGGTTATAATGT+TGG | 0.465141 | 6_4:-14714217 | Msa0978680:three_prime_UTR |
| TCCTAACACATCCACCTTTG+CGG | 0.472579 | 6_4:+14714441 | None:intergenic |
| TCCTTCAACAGGAGAGTCAC+GGG | 0.477973 | 6_4:-14714616 | Msa0978680:intron |
| AACGGTTCATCTTCGATGCC+AGG | 0.479659 | 6_4:+14715865 | None:intergenic |
| ATTTAATGGATTAATTAAAG+TGG | 0.479661 | 6_4:-14713989 | Msa0978680:three_prime_UTR |
| CAAACCTTGTGTTCTTGAGA+AGG | 0.481678 | 6_4:-14714188 | Msa0978680:three_prime_UTR |
| GGCTGCAAATCCCTTGGTCC+AGG | 0.494860 | 6_4:-14714531 | Msa0978680:CDS |
| TTGGAGATGGCAAGCCTGAT+GGG | 0.496255 | 6_4:+14714474 | None:intergenic |
| CGGGATGCAGAATTTGGAGA+TGG | 0.500725 | 6_4:+14714461 | None:intergenic |
| CCTTCTACTCTAACGGCAGC+CGG | 0.501686 | 6_4:+14714401 | None:intergenic |
| TTTGTTTGATCTCTCCCTCA+AGG | 0.503206 | 6_4:-14716675 | Msa0978680:intron |
| CGTTTCCAAATCGAGCATCC+TGG | 0.506071 | 6_4:+14714513 | None:intergenic |
| ATCATATCATCATCCCCATC+AGG | 0.509951 | 6_4:-14714488 | Msa0978680:CDS |
| CAAAGTAGCTGGCTGCTACA+AGG | 0.514858 | 6_4:+14716694 | None:intergenic |
| CATCTCTTCACAAGCTGCAA+AGG | 0.522362 | 6_4:+14715824 | None:intergenic |
| AAACCATTAGGTCATGCAAA+TGG | 0.527081 | 6_4:+14713948 | None:intergenic |
| ATGGAATGTTAAGCGACAGC+AGG | 0.533461 | 6_4:+14714338 | None:intergenic |
| GAGAGATCAAACAAAGTAGC+TGG | 0.533961 | 6_4:+14716683 | None:intergenic |
| GGTCAGGGCTGCAAATCCCT+TGG | 0.539999 | 6_4:-14714537 | Msa0978680:CDS |
| TTCCTTCAACAGGAGAGTCA+CGG | 0.541824 | 6_4:-14714617 | Msa0978680:intron |
| TGAAATCTCAATTGTCGCAC+AGG | 0.546029 | 6_4:+14715720 | None:intergenic |
| TTTGGAGATGGCAAGCCTGA+TGG | 0.546888 | 6_4:+14714473 | None:intergenic |
| TCCTAAGCCACGACGAGTCG+GGG | 0.547817 | 6_4:-14715757 | Msa0978680:CDS |
| TCTCTATACATTCATTCTCA+TGG | 0.548602 | 6_4:+14714079 | None:intergenic |
| TGTTCATAGTCAACAAGCTG+AGG | 0.552611 | 6_4:-14715606 | Msa0978680:intron |
| AGCCCTGACCGGTGGAGACA+CGG | 0.557082 | 6_4:+14714550 | None:intergenic |
| GTTCATAGTCAACAAGCTGA+GGG | 0.558392 | 6_4:-14715605 | Msa0978680:intron |
| TGTTCTTAGGCGTTCTACTG+TGG | 0.558532 | 6_4:-14715896 | Msa0978680:intron |
| AATTCTGGCGATCCCTGTTG+AGG | 0.559016 | 6_4:+14714369 | None:intergenic |
| TCTACTGTGGAATAAGAACC+TGG | 0.564324 | 6_4:-14715883 | Msa0978680:five_prime_UTR |
| GTCGAACCCTTCTACTCTAA+CGG | 0.572882 | 6_4:+14714394 | None:intergenic |
| AATTCTGCATCCCGCAAAGG+TGG | 0.573238 | 6_4:-14714452 | Msa0978680:CDS |
| AGGCTCCTTGTGATCAGTAA+TGG | 0.576308 | 6_4:+14715788 | None:intergenic |
| CAAACCTTCTCAAGAACACA+AGG | 0.580335 | 6_4:+14714184 | None:intergenic |
| AGAATGAATGTATAGAGAGT+TGG | 0.581329 | 6_4:-14714074 | Msa0978680:three_prime_UTR |
| CAGAGAAGTGTATATAAAGA+CGG | 0.583993 | 6_4:-14714314 | Msa0978680:three_prime_UTR |
| TGTCCTAAGCCACGACGAGT+CGG | 0.584427 | 6_4:-14715759 | Msa0978680:CDS |
| CCAAATTCTGCATCCCGCAA+AGG | 0.597293 | 6_4:-14714455 | Msa0978680:CDS |
| GTAGCTGGCTGCTACAAGGA+AGG | 0.600650 | 6_4:+14716698 | None:intergenic |
| AAATCGAGCATCCTGGACCA+AGG | 0.614921 | 6_4:+14714520 | None:intergenic |
| TGGAATGTTAAGCGACAGCA+GGG | 0.618138 | 6_4:+14714339 | None:intergenic |
| GCAGCTTGTGAAGAGATGAG+AGG | 0.621316 | 6_4:-14715819 | Msa0978680:CDS |
| GGATTTGCAGCCCTGACCGG+TGG | 0.621974 | 6_4:+14714542 | None:intergenic |
| GACAAGACCCCGACTCGTCG+TGG | 0.623519 | 6_4:+14715750 | None:intergenic |
| CGTTCTGCTGAAGACTGTAA+CGG | 0.626857 | 6_4:+14715847 | None:intergenic |
| AATCGAGCATCCTGGACCAA+GGG | 0.628072 | 6_4:+14714521 | None:intergenic |
| TGGCTGCTACAAGGAAGGAG+AGG | 0.636394 | 6_4:+14716703 | None:intergenic |
| GGGTTCTGATTCAAAAGCTG+CGG | 0.642823 | 6_4:-14715585 | Msa0978680:CDS |
| AGTTACCATTACTGATCACA+AGG | 0.652918 | 6_4:-14715793 | Msa0978680:CDS |
| TGGAGATGGCAAGCCTGATG+GGG | 0.657463 | 6_4:+14714475 | None:intergenic |
| CGGCTGCCGTTAGAGTAGAA+GGG | 0.675818 | 6_4:-14714400 | Msa0978680:CDS |
| CCTTCAACAGGAGAGTCACG+GGG | 0.682882 | 6_4:-14714615 | Msa0978680:intron |
| AGGGTTCGACTGCCTCAACA+GGG | 0.685342 | 6_4:-14714381 | Msa0978680:CDS |
| CGTGGCTTAGGACAAATGAG+AGG | 0.704524 | 6_4:+14715768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATATATTT+TGG | - | chr6_4:14714267-14714286 | Msa0978680:three_prime_UTR | 0.0% |
| !!! | TTTTTTATGTTTGTTATTTT+TGG | - | chr6_4:14714324-14714343 | Msa0978680:three_prime_UTR | 10.0% |
| !!! | ATTTGTTATAATCTTTTATT+AGG | - | chr6_4:14714581-14714600 | Msa0978680:CDS | 10.0% |
| !!! | TTTATTTTGATTTTGTTAAA+TGG | - | chr6_4:14715679-14715698 | Msa0978680:intron | 10.0% |
| !!! | TCTTTAATTTATACTGTTTT+TGG | - | chr6_4:14715604-14715623 | Msa0978680:intron | 15.0% |
| !!! | CTTTAATTTATACTGTTTTT+GGG | - | chr6_4:14715605-14715624 | Msa0978680:intron | 15.0% |
| !! | CATTAAAATACTAAAATGAT+AGG | + | chr6_4:14715758-14715777 | None:intergenic | 15.0% |
| !!! | TATTTTAATGTTCTGATTTT+TGG | - | chr6_4:14715768-14715787 | Msa0978680:CDS | 15.0% |
| !!! | GTGACTTAAATAATTTTTTT+AGG | - | chr6_4:14716604-14716623 | Msa0978680:intron | 15.0% |
| !! | TTTAGAAAAATTTATGAGTA+TGG | - | chr6_4:14716690-14716709 | Msa0978680:five_prime_UTR | 15.0% |
| !! | ATGGCTTATTATATATTTAA+TGG | - | chr6_4:14716709-14716728 | Msa0978680:five_prime_UTR | 15.0% |
| !!! | ATTTAATGGATTAATTAAAG+TGG | - | chr6_4:14716723-14716742 | Msa0978680:five_prime_UTR | 15.0% |
| !!! | TATATTTTGGATGATAATTG+AGG | - | chr6_4:14714280-14714299 | Msa0978680:three_prime_UTR | 20.0% |
| !!! | TGGAAATTTTTTTGTTTTGT+CGG | - | chr6_4:14714350-14714369 | Msa0978680:CDS | 20.0% |
| !!! | AAAAGTTTGAGAATTTTTCA+AGG | - | chr6_4:14714425-14714444 | Msa0978680:CDS | 20.0% |
| !! | AATTTGTGAAAGATTGAAAA+AGG | - | chr6_4:14714510-14714529 | Msa0978680:CDS | 20.0% |
| !!! | TTTAGTTTTTTAGTGTAATG+TGG | - | chr6_4:14714553-14714572 | Msa0978680:CDS | 20.0% |
| !! | AAACAAACATAACAAAATCA+TGG | + | chr6_4:14715872-14715891 | None:intergenic | 20.0% |
| !!! | AATTAATCGAAGTTTGAAAT+CGG | + | chr6_4:14716063-14716082 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTGTGTACTAAA+AGG | - | chr6_4:14716567-14716586 | Msa0978680:intron | 20.0% |
| !!! | ATAGGATCAATTTTGATATT+TGG | - | chr6_4:14716787-14716806 | Msa0978680:five_prime_UTR | 20.0% |
| ! | TGTAGTGAGTGTAAAAAAAA+GGG | + | chr6_4:14713931-14713950 | None:intergenic | 25.0% |
| ! | TTGTAGTGAGTGTAAAAAAA+AGG | + | chr6_4:14713932-14713951 | None:intergenic | 25.0% |
| ! | AACAAAAGATGTTACAAACA+TGG | + | chr6_4:14714125-14714144 | None:intergenic | 25.0% |
| !! | AATTCTCAAACTTTTCATCT+GGG | + | chr6_4:14714420-14714439 | None:intergenic | 25.0% |
| !! | AAATTCTCAAACTTTTCATC+TGG | + | chr6_4:14714421-14714440 | None:intergenic | 25.0% |
| !! | TTTAAGAAATTTTCTGCAGA+TGG | - | chr6_4:14714613-14714632 | Msa0978680:intron | 25.0% |
| ! | ATTGACATTGAATATTGTTC+TGG | - | chr6_4:14715042-14715061 | Msa0978680:intron | 25.0% |
| ! | CCTATTTCATAAAGATAACT+GGG | + | chr6_4:14715479-14715498 | None:intergenic | 25.0% |
| ! | TCCTATTTCATAAAGATAAC+TGG | + | chr6_4:14715480-14715499 | None:intergenic | 25.0% |
| ! | TAAAGATAACCAAGCAAAAA+AGG | + | chr6_4:14715590-14715609 | None:intergenic | 25.0% |
| !! | ATGATTAGTAATTTTCCTGT+AGG | - | chr6_4:14715926-14715945 | Msa0978680:intron | 25.0% |
| ! | TTTATATACACTTCTCTGAA+TGG | + | chr6_4:14716396-14716415 | None:intergenic | 25.0% |
| ! | AAAATATCTTGAGTAGTTTG+AGG | - | chr6_4:14716483-14716502 | Msa0978680:intron | 25.0% |
| ! | AATTGATCCTATAAACCATT+AGG | + | chr6_4:14716779-14716798 | None:intergenic | 25.0% |
| GTAGTGAGTGTAAAAAAAAG+GGG | + | chr6_4:14713930-14713949 | None:intergenic | 30.0% | |
| TGAAACATAACATGTTTCCT+AGG | - | chr6_4:14714178-14714197 | Msa0978680:three_prime_UTR | 30.0% | |
| !!! | ATGTTTGTTATTTTTGGCGA+TGG | - | chr6_4:14714330-14714349 | Msa0978680:exon | 30.0% |
| !! | GTCGGTTGATTTTAATGTAA+AGG | - | chr6_4:14714368-14714387 | Msa0978680:CDS | 30.0% |
| TTCACAAAACCTACACAAAA+GGG | + | chr6_4:14714492-14714511 | None:intergenic | 30.0% | |
| ATTCACAAAACCTACACAAA+AGG | + | chr6_4:14714493-14714512 | None:intergenic | 30.0% | |
| ! | TTGTTGTGTTTTGTGTTCTT+AGG | - | chr6_4:14714803-14714822 | Msa0978680:intron | 30.0% |
| AATTTGTCGAGCTCATATTT+AGG | - | chr6_4:14715199-14715218 | Msa0978680:intron | 30.0% | |
| AAATGTCTGTGTGATAATCT+TGG | - | chr6_4:14715237-14715256 | Msa0978680:intron | 30.0% | |
| CCCAGTTATCTTTATGAAAT+AGG | - | chr6_4:14715476-14715495 | Msa0978680:intron | 30.0% | |
| !! | CTTATTAACGAAGGCATTAA+TGG | + | chr6_4:14715631-14715650 | None:intergenic | 30.0% |
| TGTTCTCTTAGAAAAAGAGT+TGG | - | chr6_4:14715704-14715723 | Msa0978680:intron | 30.0% | |
| ! | GGATTCGTCTTATTATTAGT+CGG | - | chr6_4:14715725-14715744 | Msa0978680:CDS | 30.0% |
| CAAAAATCACATTTACCTAC+AGG | + | chr6_4:14715944-14715963 | None:intergenic | 30.0% | |
| ! | CTGTAGGTAAATGTGATTTT+TGG | - | chr6_4:14715942-14715961 | Msa0978680:intron | 30.0% |
| ! | CAGAGAAGTGTATATAAAGA+CGG | - | chr6_4:14716398-14716417 | Msa0978680:intron | 30.0% |
| ! | GTAGTTTGAGGTTATAATGT+TGG | - | chr6_4:14716495-14716514 | Msa0978680:intron | 30.0% |
| TCTCTATACATTCATTCTCA+TGG | + | chr6_4:14716636-14716655 | None:intergenic | 30.0% | |
| AGAATGAATGTATAGAGAGT+TGG | - | chr6_4:14716638-14716657 | Msa0978680:intron | 30.0% | |
| CAATTGAACAGATCTATCCT+AGG | + | chr6_4:14714198-14714217 | None:intergenic | 35.0% | |
| !! | ATTAAGTTGCCCTTTTGTGT+AGG | - | chr6_4:14714480-14714499 | Msa0978680:CDS | 35.0% |
| AGTTACCATTACTGATCACA+AGG | - | chr6_4:14714919-14714938 | Msa0978680:intron | 35.0% | |
| !! | TATTGTTCTGGATGCCTTTT+AGG | - | chr6_4:14715054-14715073 | Msa0978680:intron | 35.0% |
| !! | GCTTGACATGATTTTTGAGA+AGG | - | chr6_4:14715157-14715176 | Msa0978680:intron | 35.0% |
| TCAAATTACACTGCACTACT+AGG | + | chr6_4:14715266-14715285 | None:intergenic | 35.0% | |
| TAAAGATAACTGGGCAAATC+AGG | + | chr6_4:14715470-14715489 | None:intergenic | 35.0% | |
| AAATAGGATTGCGAGATTCT+TGG | - | chr6_4:14715492-14715511 | Msa0978680:intron | 35.0% | |
| ! | AATAAGACACACGGTTTGTT+TGG | - | chr6_4:14715645-14715664 | Msa0978680:intron | 35.0% |
| !!! | TATGTTTTGATGCACGGTTA+AGG | - | chr6_4:14715819-14715838 | Msa0978680:CDS | 35.0% |
| CTAATCATATTCAACAAGCG+TGG | + | chr6_4:14715914-14715933 | None:intergenic | 35.0% | |
| CTTCTAGTCAAACTGAGATT+TGG | + | chr6_4:14716005-14716024 | None:intergenic | 35.0% | |
| ! | TTGCATTCTTTTCCTTCAAC+AGG | - | chr6_4:14716085-14716104 | Msa0978680:intron | 35.0% |
| !!! | GATGAGTTTTGGACTTAAAC+CGG | - | chr6_4:14716292-14716311 | Msa0978680:intron | 35.0% |
| !!! | GTATAGAGAGTTGGTGATTT+TGG | - | chr6_4:14716647-14716666 | Msa0978680:intron | 35.0% |
| AAACCATTAGGTCATGCAAA+TGG | + | chr6_4:14716767-14716786 | None:intergenic | 35.0% | |
| TGCATGACCTAATGGTTTAT+AGG | - | chr6_4:14716769-14716788 | Msa0978680:five_prime_UTR | 35.0% | |
| GAGAGATCAAACAAAGTAGC+TGG | + | chr6_4:14714032-14714051 | None:intergenic | 40.0% | |
| TTTGTTTGATCTCTCCCTCA+AGG | - | chr6_4:14714037-14714056 | Msa0978680:three_prime_UTR | 40.0% | |
| GAGAGAGAGATTAACCTTGA+GGG | + | chr6_4:14714054-14714073 | None:intergenic | 40.0% | |
| AGAGAGAGAGATTAACCTTG+AGG | + | chr6_4:14714055-14714074 | None:intergenic | 40.0% | |
| TCTACTGTGGAATAAGAACC+TGG | - | chr6_4:14714829-14714848 | Msa0978680:intron | 40.0% | |
| TGAAATCTCAATTGTCGCAC+AGG | + | chr6_4:14714995-14715014 | None:intergenic | 40.0% | |
| TTACAGATCAGCCACCTAAA+AGG | + | chr6_4:14715071-14715090 | None:intergenic | 40.0% | |
| TGTTCATAGTCAACAAGCTG+AGG | - | chr6_4:14715106-14715125 | Msa0978680:intron | 40.0% | |
| GTTCATAGTCAACAAGCTGA+GGG | - | chr6_4:14715107-14715126 | Msa0978680:intron | 40.0% | |
| GCTGCATATGTTGTCAATCA+TGG | + | chr6_4:14715340-14715359 | None:intergenic | 40.0% | |
| GAACACGATTGCAAGAATCT+TGG | - | chr6_4:14715373-14715392 | Msa0978680:intron | 40.0% | |
| TTGCAAGAATCTTGGATGAG+TGG | - | chr6_4:14715381-14715400 | Msa0978680:intron | 40.0% | |
| ! | TACGTGTTTTCCGTGCATTT+TGG | - | chr6_4:14715438-14715457 | Msa0978680:intron | 40.0% |
| !!! | TGGCGAATACCTTTTTTGCT+TGG | - | chr6_4:14715578-14715597 | Msa0978680:CDS | 40.0% |
| GCCTTCGTTAATAAGACACA+CGG | - | chr6_4:14715636-14715655 | Msa0978680:intron | 40.0% | |
| ! | ACCGTGTGTCTTATTAACGA+AGG | + | chr6_4:14715640-14715659 | None:intergenic | 40.0% |
| !!! | ACCGTGTATGTTTTGATGCA+CGG | - | chr6_4:14715813-14715832 | Msa0978680:CDS | 40.0% |
| ACCGTGCATCAAAACATACA+CGG | + | chr6_4:14715817-14715836 | None:intergenic | 40.0% | |
| GGAAAAATATGGAGGAGATG+AGG | + | chr6_4:14716144-14716163 | None:intergenic | 40.0% | |
| ! | ATATTTTTCCGTGTCTCCAC+CGG | - | chr6_4:14716154-14716173 | Msa0978680:intron | 40.0% |
| ATCATATCATCATCCCCATC+AGG | - | chr6_4:14716224-14716243 | Msa0978680:intron | 40.0% | |
| ! | GGATGTGTTAGGATGAGTTT+TGG | - | chr6_4:14716281-14716300 | Msa0978680:intron | 40.0% |
| CAAACCTTGTGTTCTTGAGA+AGG | - | chr6_4:14716524-14716543 | Msa0978680:intron | 40.0% | |
| CAAACCTTCTCAAGAACACA+AGG | + | chr6_4:14716531-14716550 | None:intergenic | 40.0% | |
| ! | ATGCCATTTGCATGACCTAA+TGG | - | chr6_4:14716761-14716780 | Msa0978680:five_prime_UTR | 40.0% |
| TGTTCTTAGGCGTTCTACTG+TGG | - | chr6_4:14714816-14714835 | Msa0978680:intron | 45.0% | |
| CGTTCTGCTGAAGACTGTAA+CGG | + | chr6_4:14714868-14714887 | None:intergenic | 45.0% | |
| CATCTCTTCACAAGCTGCAA+AGG | + | chr6_4:14714891-14714910 | None:intergenic | 45.0% | |
| AGGCTCCTTGTGATCAGTAA+TGG | + | chr6_4:14714927-14714946 | None:intergenic | 45.0% | |
| !! | TGTTCTGGATGCCTTTTAGG+TGG | - | chr6_4:14715057-14715076 | Msa0978680:intron | 45.0% |
| ! | GGGTTCTGATTCAAAAGCTG+CGG | - | chr6_4:14715127-14715146 | Msa0978680:intron | 45.0% |
| TCGAGCTCATATTTAGGCTC+AGG | - | chr6_4:14715205-14715224 | Msa0978680:intron | 45.0% | |
| CAGGTATTCGCCAAAATGCA+CGG | + | chr6_4:14715451-14715470 | None:intergenic | 45.0% | |
| TTGCGAGATTCTTGGATGAG+TGG | - | chr6_4:14715500-14715519 | Msa0978680:intron | 45.0% | |
| TATGCACTTTCCGTGCATTC+TGG | - | chr6_4:14715558-14715577 | Msa0978680:CDS | 45.0% | |
| ! | AAGGTATTCGCCAGAATGCA+CGG | + | chr6_4:14715571-14715590 | None:intergenic | 45.0% |
| TTCCTTCAACAGGAGAGTCA+CGG | - | chr6_4:14716095-14716114 | Msa0978680:intron | 45.0% | |
| GGAGACACGGAAAAATATGG+AGG | + | chr6_4:14716152-14716171 | None:intergenic | 45.0% | |
| GGTGGAGACACGGAAAAATA+TGG | + | chr6_4:14716155-14716174 | None:intergenic | 45.0% | |
| TCCTAACACATCCACCTTTG+CGG | + | chr6_4:14716274-14716293 | None:intergenic | 45.0% | |
| GTCGAACCCTTCTACTCTAA+CGG | + | chr6_4:14716321-14716340 | None:intergenic | 45.0% | |
| TGGAATGTTAAGCGACAGCA+GGG | + | chr6_4:14716376-14716395 | None:intergenic | 45.0% | |
| ATGGAATGTTAAGCGACAGC+AGG | + | chr6_4:14716377-14716396 | None:intergenic | 45.0% | |
| CAAAGTAGCTGGCTGCTACA+AGG | + | chr6_4:14714021-14714040 | None:intergenic | 50.0% | |
| AACGGTTCATCTTCGATGCC+AGG | + | chr6_4:14714850-14714869 | None:intergenic | 50.0% | |
| GCAGCTTGTGAAGAGATGAG+AGG | - | chr6_4:14714893-14714912 | Msa0978680:intron | 50.0% | |
| CGTGGCTTAGGACAAATGAG+AGG | + | chr6_4:14714947-14714966 | None:intergenic | 50.0% | |
| TCCTTCAACAGGAGAGTCAC+GGG | - | chr6_4:14716096-14716115 | Msa0978680:intron | 50.0% | |
| AATCGAGCATCCTGGACCAA+GGG | + | chr6_4:14716194-14716213 | None:intergenic | 50.0% | |
| AAATCGAGCATCCTGGACCA+AGG | + | chr6_4:14716195-14716214 | None:intergenic | 50.0% | |
| TTGGTCCAGGATGCTCGATT+TGG | - | chr6_4:14716194-14716213 | Msa0978680:intron | 50.0% | |
| CGTTTCCAAATCGAGCATCC+TGG | + | chr6_4:14716202-14716221 | None:intergenic | 50.0% | |
| TTGGAGATGGCAAGCCTGAT+GGG | + | chr6_4:14716241-14716260 | None:intergenic | 50.0% | |
| TTTGGAGATGGCAAGCCTGA+TGG | + | chr6_4:14716242-14716261 | None:intergenic | 50.0% | |
| CGGGATGCAGAATTTGGAGA+TGG | + | chr6_4:14716254-14716273 | None:intergenic | 50.0% | |
| CCTTTGCGGGATGCAGAATT+TGG | + | chr6_4:14716260-14716279 | None:intergenic | 50.0% | |
| CCAAATTCTGCATCCCGCAA+AGG | - | chr6_4:14716257-14716276 | Msa0978680:intron | 50.0% | |
| AATTCTGCATCCCGCAAAGG+TGG | - | chr6_4:14716260-14716279 | Msa0978680:intron | 50.0% | |
| CCTAACACATCCACCTTTGC+GGG | + | chr6_4:14716273-14716292 | None:intergenic | 50.0% | |
| AATTCTGGCGATCCCTGTTG+AGG | + | chr6_4:14716346-14716365 | None:intergenic | 50.0% | |
| TGGCTGCTACAAGGAAGGAG+AGG | + | chr6_4:14714012-14714031 | None:intergenic | 55.0% | |
| GTAGCTGGCTGCTACAAGGA+AGG | + | chr6_4:14714017-14714036 | None:intergenic | 55.0% | |
| TGTCCTAAGCCACGACGAGT+CGG | - | chr6_4:14714953-14714972 | Msa0978680:intron | 55.0% | |
| CCTTCAACAGGAGAGTCACG+GGG | - | chr6_4:14716097-14716116 | Msa0978680:intron | 55.0% | |
| AAGGGATTTGCAGCCCTGAC+CGG | + | chr6_4:14716176-14716195 | None:intergenic | 55.0% | |
| TGGAGATGGCAAGCCTGATG+GGG | + | chr6_4:14716240-14716259 | None:intergenic | 55.0% | |
| CCCGCAAAGGTGGATGTGTT+AGG | - | chr6_4:14716270-14716289 | Msa0978680:intron | 55.0% | |
| CCTTCTACTCTAACGGCAGC+CGG | + | chr6_4:14716314-14716333 | None:intergenic | 55.0% | |
| CGGCTGCCGTTAGAGTAGAA+GGG | - | chr6_4:14716312-14716331 | Msa0978680:intron | 55.0% | |
| AAGGGTTCGACTGCCTCAAC+AGG | - | chr6_4:14716330-14716349 | Msa0978680:intron | 55.0% | |
| AGGGTTCGACTGCCTCAACA+GGG | - | chr6_4:14716331-14716350 | Msa0978680:intron | 55.0% | |
| CAGCAGGGACGCTTGAATTC+TGG | + | chr6_4:14716361-14716380 | None:intergenic | 55.0% | |
| GTCCTAAGCCACGACGAGTC+GGG | - | chr6_4:14714954-14714973 | Msa0978680:intron | 60.0% | |
| TCCTAAGCCACGACGAGTCG+GGG | - | chr6_4:14714955-14714974 | Msa0978680:intron | 60.0% | |
| CCCCGTGACTCTCCTGTTGA+AGG | + | chr6_4:14716100-14716119 | None:intergenic | 60.0% | |
| TTTCCGTGTCTCCACCGGTC+AGG | - | chr6_4:14716159-14716178 | Msa0978680:intron | 60.0% | |
| TTCCGTGTCTCCACCGGTCA+GGG | - | chr6_4:14716160-14716179 | Msa0978680:intron | 60.0% | |
| GGTCAGGGCTGCAAATCCCT+TGG | - | chr6_4:14716175-14716194 | Msa0978680:intron | 60.0% | |
| GGCTGCAAATCCCTTGGTCC+AGG | - | chr6_4:14716181-14716200 | Msa0978680:intron | 60.0% | |
| CCGGCTGCCGTTAGAGTAGA+AGG | - | chr6_4:14716311-14716330 | Msa0978680:intron | 60.0% | |
| ! | ACCCCGACTCGTCGTGGCTT+AGG | + | chr6_4:14714959-14714978 | None:intergenic | 65.0% |
| ! | GACAAGACCCCGACTCGTCG+TGG | + | chr6_4:14714965-14714984 | None:intergenic | 65.0% |
| AGCCCTGACCGGTGGAGACA+CGG | + | chr6_4:14716165-14716184 | None:intergenic | 65.0% | |
| GGATTTGCAGCCCTGACCGG+TGG | + | chr6_4:14716173-14716192 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 14713918 | 14716816 | 14713918 | ID=Msa0978680;Name=Msa0978680 |
| chr6_4 | mRNA | 14713918 | 14716816 | 14713918 | ID=Msa0978680-mRNA-1;Parent=Msa0978680;Name=Msa0978680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|0.66|0.75|4|428|168 |
| chr6_4 | exon | 14713918 | 14714627 | 14713918 | ID=Msa0978680-mRNA-1:exon:4847;Parent=Msa0978680-mRNA-1 |
| chr6_4 | exon | 14715556 | 14715619 | 14715556 | ID=Msa0978680-mRNA-1:exon:4846;Parent=Msa0978680-mRNA-1 |
| chr6_4 | exon | 14715714 | 14715909 | 14715714 | ID=Msa0978680-mRNA-1:exon:4845;Parent=Msa0978680-mRNA-1 |
| chr6_4 | exon | 14716676 | 14716816 | 14716676 | ID=Msa0978680-mRNA-1:exon:4844;Parent=Msa0978680-mRNA-1 |
| chr6_4 | five_prime_UTR | 14716676 | 14716816 | 14716676 | ID=Msa0978680-mRNA-1:five_prime_utr;Parent=Msa0978680-mRNA-1 |
| chr6_4 | five_prime_UTR | 14715875 | 14715909 | 14715875 | ID=Msa0978680-mRNA-1:five_prime_utr;Parent=Msa0978680-mRNA-1 |
| chr6_4 | CDS | 14715714 | 14715874 | 14715714 | ID=Msa0978680-mRNA-1:cds;Parent=Msa0978680-mRNA-1 |
| chr6_4 | CDS | 14715556 | 14715619 | 14715556 | ID=Msa0978680-mRNA-1:cds;Parent=Msa0978680-mRNA-1 |
| chr6_4 | CDS | 14714346 | 14714627 | 14714346 | ID=Msa0978680-mRNA-1:cds;Parent=Msa0978680-mRNA-1 |
| chr6_4 | three_prime_UTR | 14713918 | 14714345 | 14713918 | ID=Msa0978680-mRNA-1:three_prime_utr;Parent=Msa0978680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
