Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876340 | XP_003618748.1 | 96.429 | 168 | 6 | 0 | 1 | 168 | 1 | 168 | 1.97e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876340 | G7KMS6 | 96.429 | 168 | 6 | 0 | 1 | 168 | 1 | 168 | 9.41e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746220 | Msa0876340 | 0.931079 | 6.413568e-94 | -8.615850e-47 |
| Msa0876340 | Msa0978680 | 0.851986 | 6.206319e-61 | -8.615850e-47 |
| Msa0876340 | Msa1356450 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876340 | MtrunA17_Chr6g0457561 | 96.429 | 168 | 6 | 0 | 1 | 168 | 1 | 168 | 1.81e-118 | 332 |
| Msa0876340 | MtrunA17_Chr8g0391011 | 49.007 | 151 | 66 | 4 | 28 | 168 | 11 | 160 | 3.51e-34 | 118 |
| Msa0876340 | MtrunA17_Chr1g0209811 | 45.570 | 158 | 69 | 5 | 27 | 168 | 4 | 160 | 8.02e-31 | 109 |
| Msa0876340 | MtrunA17_Chr6g0484481 | 42.697 | 178 | 81 | 7 | 1 | 168 | 1 | 167 | 1.60e-30 | 108 |
| Msa0876340 | MtrunA17_Chr4g0045631 | 44.318 | 176 | 55 | 5 | 1 | 168 | 1 | 141 | 4.17e-29 | 104 |
| Msa0876340 | MtrunA17_Chr1g0171841 | 43.243 | 185 | 57 | 6 | 1 | 168 | 1 | 154 | 7.01e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876340 | AT5G16110.1 | 53.005 | 183 | 66 | 5 | 1 | 168 | 67 | 244 | 9.56e-51 | 163 |
| Msa0876340 | AT3G02555.2 | 53.757 | 173 | 64 | 6 | 1 | 168 | 1 | 162 | 2.57e-43 | 141 |
| Msa0876340 | AT3G02555.1 | 53.757 | 173 | 64 | 6 | 1 | 168 | 1 | 162 | 2.57e-43 | 141 |
| Msa0876340 | AT1G68490.1 | 45.652 | 184 | 83 | 8 | 1 | 168 | 1 | 183 | 5.65e-40 | 134 |
| Msa0876340 | AT1G13390.1 | 40.556 | 180 | 90 | 7 | 1 | 168 | 2 | 176 | 2.36e-31 | 111 |
| Msa0876340 | AT1G13390.2 | 40.556 | 180 | 90 | 7 | 1 | 168 | 2 | 176 | 2.36e-31 | 111 |
Find 72 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCGGGATGCAGAATT+TGG | 0.163389 | 6_1:+14284454 | None:intergenic |
| ATGGCTTATTATATATTTAA+TGG | 0.180904 | 6_1:-14284003 | Msa0876340:three_prime_UTR |
| GTATAGAGAGTTGGTGATTT+TGG | 0.220921 | 6_1:-14284065 | Msa0876340:three_prime_UTR |
| TGCATGACCTAATGGTTTAT+AGG | 0.293597 | 6_1:-14283943 | Msa0876340:three_prime_UTR |
| CAGCAGGGACGCTTGAATTC+TGG | 0.294975 | 6_1:+14284353 | None:intergenic |
| ACGGCTGCCGTTAGAGTAGA+AGG | 0.340034 | 6_1:-14284400 | Msa0876340:CDS |
| CCTAACACATCCACCTTTGC+GGG | 0.345952 | 6_1:+14284441 | None:intergenic |
| TTGGTCCAGGATGCTCGATT+TGG | 0.359597 | 6_1:-14284517 | Msa0876340:CDS |
| TTTCCGTGTCTCCACCGGTC+AGG | 0.370731 | 6_1:-14284552 | Msa0876340:CDS |
| AAGGGTTCGACTGCCTCAAC+AGG | 0.387499 | 6_1:-14284381 | Msa0876340:CDS |
| AATTGATCCTATAAACCATT+AGG | 0.396624 | 6_1:+14283936 | None:intergenic |
| GGATGTGTTAGGATGAGTTT+TGG | 0.398776 | 6_1:-14284430 | Msa0876340:CDS |
| AAAATATCTTGAGTAGTTTG+AGG | 0.405685 | 6_1:-14284228 | Msa0876340:three_prime_UTR |
| ATGCCATTTGCATGACCTAA+TGG | 0.405687 | 6_1:-14283951 | Msa0876340:three_prime_UTR |
| GTCCTAAGCCACGACGAGTC+GGG | 0.412417 | 6_1:-14285756 | Msa0876340:CDS |
| TTTATATACACTTCTCTGAA+TGG | 0.415088 | 6_1:+14284318 | None:intergenic |
| TTCCGTGTCTCCACCGGTCA+GGG | 0.433361 | 6_1:-14284551 | Msa0876340:CDS |
| CCCGCAAAGGTGGATGTGTT+AGG | 0.445900 | 6_1:-14284441 | Msa0876340:CDS |
| GAGAGAGAGATTAACCTTGA+GGG | 0.463059 | 6_1:+14286657 | None:intergenic |
| GTAGTTTGAGGTTATAATGT+TGG | 0.465141 | 6_1:-14284216 | Msa0876340:three_prime_UTR |
| TCCTAACACATCCACCTTTG+CGG | 0.472579 | 6_1:+14284440 | None:intergenic |
| TCCTTCAACAGGAGAGTCAC+GGG | 0.477973 | 6_1:-14284615 | Msa0876340:intron |
| AACGGTTCATCTTCGATGCC+AGG | 0.479659 | 6_1:+14285863 | None:intergenic |
| ATTTAATGGATTAATTAAAG+TGG | 0.479661 | 6_1:-14283989 | Msa0876340:three_prime_UTR |
| CAAACCTTGTGTTCTTGAGA+AGG | 0.481678 | 6_1:-14284187 | Msa0876340:three_prime_UTR |
| GGCTGCAAATCCCTTGGTCC+AGG | 0.494860 | 6_1:-14284530 | Msa0876340:CDS |
| TTGGAGATGGCAAGCCTGAT+GGG | 0.496255 | 6_1:+14284473 | None:intergenic |
| CGGGATGCAGAATTTGGAGA+TGG | 0.500725 | 6_1:+14284460 | None:intergenic |
| TTTGTTTGATCTCTCCCTCA+AGG | 0.503206 | 6_1:-14286671 | Msa0876340:intron |
| CGTTTCCAAATCGAGCATCC+TGG | 0.506071 | 6_1:+14284512 | None:intergenic |
| ATCATATCATCATCCCCATC+AGG | 0.509951 | 6_1:-14284487 | Msa0876340:CDS |
| CAAAGTAGCTGGCTGCTACA+AGG | 0.514858 | 6_1:+14286690 | None:intergenic |
| CATCTCTTCACAAGCTGCAA+AGG | 0.522362 | 6_1:+14285822 | None:intergenic |
| AAACCATTAGGTCATGCAAA+TGG | 0.527081 | 6_1:+14283948 | None:intergenic |
| ATGGAATGTTAAGCGACAGC+AGG | 0.533461 | 6_1:+14284337 | None:intergenic |
| GAGAGATCAAACAAAGTAGC+TGG | 0.533961 | 6_1:+14286679 | None:intergenic |
| GGTCAGGGCTGCAAATCCCT+TGG | 0.539999 | 6_1:-14284536 | Msa0876340:CDS |
| TTCCTTCAACAGGAGAGTCA+CGG | 0.541824 | 6_1:-14284616 | Msa0876340:intron |
| TGAAATCTCAATTGTCGCAC+AGG | 0.546029 | 6_1:+14285718 | None:intergenic |
| TTTGGAGATGGCAAGCCTGA+TGG | 0.546888 | 6_1:+14284472 | None:intergenic |
| TCCTAAGCCACGACGAGTCG+GGG | 0.547817 | 6_1:-14285755 | Msa0876340:CDS |
| TCTCTATACATTCATTCTCA+TGG | 0.548602 | 6_1:+14284079 | None:intergenic |
| TGTTCATAGTCAACAAGCTG+AGG | 0.552611 | 6_1:-14285605 | Msa0876340:intron |
| AGCCCTGACCGGTGGAGACA+CGG | 0.557082 | 6_1:+14284549 | None:intergenic |
| GTTCATAGTCAACAAGCTGA+GGG | 0.558392 | 6_1:-14285604 | Msa0876340:intron |
| TGTTCTTAGGCGTTCTACTG+TGG | 0.558532 | 6_1:-14285894 | Msa0876340:intron |
| AATTCTGGCGATCCCTGTTG+AGG | 0.559016 | 6_1:+14284368 | None:intergenic |
| TCTACTGTGGAATAAGAACC+TGG | 0.564324 | 6_1:-14285881 | Msa0876340:five_prime_UTR |
| GTCGAACCCTTCTACTCTAA+CGG | 0.572882 | 6_1:+14284393 | None:intergenic |
| AATTCTGCATCCCGCAAAGG+TGG | 0.573238 | 6_1:-14284451 | Msa0876340:CDS |
| AGGCTCCTTGTGATCAGTAA+TGG | 0.576308 | 6_1:+14285786 | None:intergenic |
| CAAACCTTCTCAAGAACACA+AGG | 0.580335 | 6_1:+14284183 | None:intergenic |
| AGAATGAATGTATAGAGAGT+TGG | 0.581329 | 6_1:-14284074 | Msa0876340:three_prime_UTR |
| CAGAGAAGTGTATATAAAGA+CGG | 0.583993 | 6_1:-14284313 | Msa0876340:three_prime_UTR |
| TGTCCTAAGCCACGACGAGT+CGG | 0.584427 | 6_1:-14285757 | Msa0876340:CDS |
| CCAAATTCTGCATCCCGCAA+AGG | 0.597293 | 6_1:-14284454 | Msa0876340:CDS |
| GTAGCTGGCTGCTACAAGGA+AGG | 0.600650 | 6_1:+14286694 | None:intergenic |
| AAATCGAGCATCCTGGACCA+AGG | 0.614921 | 6_1:+14284519 | None:intergenic |
| TGGAATGTTAAGCGACAGCA+GGG | 0.618138 | 6_1:+14284338 | None:intergenic |
| GCAGCTTGTGAAGAGATGAG+AGG | 0.621316 | 6_1:-14285817 | Msa0876340:CDS |
| GGATTTGCAGCCCTGACCGG+TGG | 0.621974 | 6_1:+14284541 | None:intergenic |
| GACAAGACCCCGACTCGTCG+TGG | 0.623519 | 6_1:+14285748 | None:intergenic |
| CGTTCTGCTGAAGACTGTAA+CGG | 0.626857 | 6_1:+14285845 | None:intergenic |
| AATCGAGCATCCTGGACCAA+GGG | 0.628072 | 6_1:+14284520 | None:intergenic |
| TGGCTGCTACAAGGAAGGAG+AGG | 0.636394 | 6_1:+14286699 | None:intergenic |
| GGGTTCTGATTCAAAAGCTG+CGG | 0.642823 | 6_1:-14285584 | Msa0876340:CDS |
| AGTTACCATTACTGATCACA+AGG | 0.652918 | 6_1:-14285791 | Msa0876340:CDS |
| TGGAGATGGCAAGCCTGATG+GGG | 0.657463 | 6_1:+14284474 | None:intergenic |
| CGGCTGCCGTTAGAGTAGAA+GGG | 0.675818 | 6_1:-14284399 | Msa0876340:CDS |
| CCTTCAACAGGAGAGTCACG+GGG | 0.682882 | 6_1:-14284614 | Msa0876340:intron |
| AGGGTTCGACTGCCTCAACA+GGG | 0.685342 | 6_1:-14284380 | Msa0876340:CDS |
| CGTGGCTTAGGACAAATGAG+AGG | 0.704524 | 6_1:+14285766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATATATTT+TGG | - | chr6_1:14284266-14284285 | Msa0876340:three_prime_UTR | 0.0% |
| !!! | TTTTTTATGTTTGTTATTTT+TGG | - | chr6_1:14284323-14284342 | Msa0876340:three_prime_UTR | 10.0% |
| !!! | ATTTGTTATAATCTTTTATT+AGG | - | chr6_1:14284579-14284598 | Msa0876340:CDS | 10.0% |
| !!! | TTTATTTTGATTTTGTTAAA+TGG | - | chr6_1:14285676-14285695 | Msa0876340:intron | 10.0% |
| !!! | TCTTTAATTTATACTGTTTT+TGG | - | chr6_1:14285601-14285620 | Msa0876340:intron | 15.0% |
| !!! | CTTTAATTTATACTGTTTTT+GGG | - | chr6_1:14285602-14285621 | Msa0876340:intron | 15.0% |
| !! | CATTAAAATACTAAAATGAT+AGG | + | chr6_1:14285755-14285774 | None:intergenic | 15.0% |
| !!! | TATTTTAATGTTCTGATTTT+TGG | - | chr6_1:14285765-14285784 | Msa0876340:CDS | 15.0% |
| !!! | GTGACTTAAATAATTTTTTT+AGG | - | chr6_1:14286600-14286619 | Msa0876340:intron | 15.0% |
| !! | TTTAGAAAAATTTATGAGTA+TGG | - | chr6_1:14286686-14286705 | Msa0876340:five_prime_UTR | 15.0% |
| !! | ATGGCTTATTATATATTTAA+TGG | - | chr6_1:14286705-14286724 | Msa0876340:five_prime_UTR | 15.0% |
| !!! | ATTTAATGGATTAATTAAAG+TGG | - | chr6_1:14286719-14286738 | Msa0876340:five_prime_UTR | 15.0% |
| !!! | TATATTTTGGATGATAATTG+AGG | - | chr6_1:14284279-14284298 | Msa0876340:three_prime_UTR | 20.0% |
| !!! | TGGAAATTTTTTTGTTTTGT+CGG | - | chr6_1:14284349-14284368 | Msa0876340:CDS | 20.0% |
| !!! | AAAAGTTTGAGAATTTTTCA+AGG | - | chr6_1:14284423-14284442 | Msa0876340:CDS | 20.0% |
| !! | AATTTGTGAAAGATTGAAAA+AGG | - | chr6_1:14284508-14284527 | Msa0876340:CDS | 20.0% |
| !!! | TTTAGTTTTTTAGTGTAATG+TGG | - | chr6_1:14284551-14284570 | Msa0876340:CDS | 20.0% |
| !! | AAACAAACATAACAAAATCA+TGG | + | chr6_1:14285869-14285888 | None:intergenic | 20.0% |
| !!! | AATTAATCGAAGTTTGAAAT+CGG | + | chr6_1:14286060-14286079 | None:intergenic | 20.0% |
| !!! | ATAGGATCAATTTTGATATT+TGG | - | chr6_1:14286783-14286802 | Msa0876340:five_prime_UTR | 20.0% |
| ! | TGTAGTGAGTGTAAAAAAAA+GGG | + | chr6_1:14283931-14283950 | None:intergenic | 25.0% |
| ! | TTGTAGTGAGTGTAAAAAAA+AGG | + | chr6_1:14283932-14283951 | None:intergenic | 25.0% |
| ! | AACAAAAGATGTTACAAACA+TGG | + | chr6_1:14284125-14284144 | None:intergenic | 25.0% |
| !! | AATTCTCAAACTTTTCATCT+GGG | + | chr6_1:14284418-14284437 | None:intergenic | 25.0% |
| !! | AAATTCTCAAACTTTTCATC+TGG | + | chr6_1:14284419-14284438 | None:intergenic | 25.0% |
| !! | TTTAAGAAATTTTCTGCAGA+TGG | - | chr6_1:14284611-14284630 | Msa0876340:intron | 25.0% |
| ! | ATTGACATTGAATATTGTTC+TGG | - | chr6_1:14285040-14285059 | Msa0876340:intron | 25.0% |
| ! | CCTATTTCATAAAGATAACT+GGG | + | chr6_1:14285476-14285495 | None:intergenic | 25.0% |
| ! | TCCTATTTCATAAAGATAAC+TGG | + | chr6_1:14285477-14285496 | None:intergenic | 25.0% |
| ! | TAAAGATAACCAAGCAAAAA+AGG | + | chr6_1:14285587-14285606 | None:intergenic | 25.0% |
| !! | ATGATTAGTAATTTTCCTGT+AGG | - | chr6_1:14285923-14285942 | Msa0876340:intron | 25.0% |
| ! | TTTATATACACTTCTCTGAA+TGG | + | chr6_1:14286393-14286412 | None:intergenic | 25.0% |
| ! | AAAATATCTTGAGTAGTTTG+AGG | - | chr6_1:14286480-14286499 | Msa0876340:intron | 25.0% |
| !!! | GTTCTTTTTTGTGTACTAAA+AGG | - | chr6_1:14286563-14286582 | Msa0876340:intron | 25.0% |
| ! | AATTGATCCTATAAACCATT+AGG | + | chr6_1:14286775-14286794 | None:intergenic | 25.0% |
| GTAGTGAGTGTAAAAAAAAG+GGG | + | chr6_1:14283930-14283949 | None:intergenic | 30.0% | |
| TGAAACATAACATGTTTCCT+AGG | - | chr6_1:14284178-14284197 | Msa0876340:three_prime_UTR | 30.0% | |
| !!! | ATGTTTGTTATTTTTGGCGA+TGG | - | chr6_1:14284329-14284348 | Msa0876340:exon | 30.0% |
| !! | GTCGGTTGATTTTAATGTAA+AGG | - | chr6_1:14284367-14284386 | Msa0876340:CDS | 30.0% |
| TTCACAAAACCTACACAAAA+GGG | + | chr6_1:14284490-14284509 | None:intergenic | 30.0% | |
| ATTCACAAAACCTACACAAA+AGG | + | chr6_1:14284491-14284510 | None:intergenic | 30.0% | |
| ! | TTGTTGTGTTTTGTGTTCTT+AGG | - | chr6_1:14284801-14284820 | Msa0876340:intron | 30.0% |
| AATTTGTCGAGCTCATATTT+AGG | - | chr6_1:14285196-14285215 | Msa0876340:intron | 30.0% | |
| AAATGTCTGTGTGATAATCT+TGG | - | chr6_1:14285234-14285253 | Msa0876340:intron | 30.0% | |
| CCCAGTTATCTTTATGAAAT+AGG | - | chr6_1:14285473-14285492 | Msa0876340:intron | 30.0% | |
| !! | CTTATTAACGAAGGCATTAA+TGG | + | chr6_1:14285628-14285647 | None:intergenic | 30.0% |
| TGTTCTCTTAGAAAAAGAGT+TGG | - | chr6_1:14285701-14285720 | Msa0876340:intron | 30.0% | |
| ! | GGATTCGTCTTATTATTAGT+CGG | - | chr6_1:14285722-14285741 | Msa0876340:CDS | 30.0% |
| CAAAAATCACATTTACCTAC+AGG | + | chr6_1:14285941-14285960 | None:intergenic | 30.0% | |
| ! | CTGTAGGTAAATGTGATTTT+TGG | - | chr6_1:14285939-14285958 | Msa0876340:intron | 30.0% |
| !!! | GATGAGTTTTGGACTTAAAA+CGG | - | chr6_1:14286289-14286308 | Msa0876340:intron | 30.0% |
| ! | CAGAGAAGTGTATATAAAGA+CGG | - | chr6_1:14286395-14286414 | Msa0876340:intron | 30.0% |
| ! | GTAGTTTGAGGTTATAATGT+TGG | - | chr6_1:14286492-14286511 | Msa0876340:intron | 30.0% |
| TCTCTATACATTCATTCTCA+TGG | + | chr6_1:14286632-14286651 | None:intergenic | 30.0% | |
| AGAATGAATGTATAGAGAGT+TGG | - | chr6_1:14286634-14286653 | Msa0876340:intron | 30.0% | |
| CAATTGAACAGATCTATCCT+AGG | + | chr6_1:14284198-14284217 | None:intergenic | 35.0% | |
| !! | ATTAAGTTGCCCTTTTGTGT+AGG | - | chr6_1:14284478-14284497 | Msa0876340:CDS | 35.0% |
| AGTTACCATTACTGATCACA+AGG | - | chr6_1:14284917-14284936 | Msa0876340:intron | 35.0% | |
| !! | TATTGTTCTGGATGCCTTTT+AGG | - | chr6_1:14285052-14285071 | Msa0876340:intron | 35.0% |
| !! | GCTTGACATGATTTTTGAGA+AGG | - | chr6_1:14285154-14285173 | Msa0876340:intron | 35.0% |
| TCAAATTACACTGCACTACT+AGG | + | chr6_1:14285263-14285282 | None:intergenic | 35.0% | |
| TAAAGATAACTGGGCAAATC+AGG | + | chr6_1:14285467-14285486 | None:intergenic | 35.0% | |
| AAATAGGATTGCGAGATTCT+TGG | - | chr6_1:14285489-14285508 | Msa0876340:intron | 35.0% | |
| ! | AATAAGACACACGGTTTGTT+TGG | - | chr6_1:14285642-14285661 | Msa0876340:intron | 35.0% |
| !!! | TATGTTTTGATGCACGGTTA+AGG | - | chr6_1:14285816-14285835 | Msa0876340:CDS | 35.0% |
| CTAATCATATTCAACAAGCG+TGG | + | chr6_1:14285911-14285930 | None:intergenic | 35.0% | |
| CTTCTAGTCAAACTGAGATT+TGG | + | chr6_1:14286002-14286021 | None:intergenic | 35.0% | |
| ! | TTGCATTCTTTTCCTTCAAC+AGG | - | chr6_1:14286082-14286101 | Msa0876340:intron | 35.0% |
| !!! | GTATAGAGAGTTGGTGATTT+TGG | - | chr6_1:14286643-14286662 | Msa0876340:intron | 35.0% |
| AAACCATTAGGTCATGCAAA+TGG | + | chr6_1:14286763-14286782 | None:intergenic | 35.0% | |
| TGCATGACCTAATGGTTTAT+AGG | - | chr6_1:14286765-14286784 | Msa0876340:five_prime_UTR | 35.0% | |
| GAGAGATCAAACAAAGTAGC+TGG | + | chr6_1:14284032-14284051 | None:intergenic | 40.0% | |
| TTTGTTTGATCTCTCCCTCA+AGG | - | chr6_1:14284037-14284056 | Msa0876340:three_prime_UTR | 40.0% | |
| GAGAGAGAGATTAACCTTGA+GGG | + | chr6_1:14284054-14284073 | None:intergenic | 40.0% | |
| AGAGAGAGAGATTAACCTTG+AGG | + | chr6_1:14284055-14284074 | None:intergenic | 40.0% | |
| TCTACTGTGGAATAAGAACC+TGG | - | chr6_1:14284827-14284846 | Msa0876340:intron | 40.0% | |
| TGAAATCTCAATTGTCGCAC+AGG | + | chr6_1:14284993-14285012 | None:intergenic | 40.0% | |
| TTACAGATCAGCCACCTAAA+AGG | + | chr6_1:14285069-14285088 | None:intergenic | 40.0% | |
| TGTTCATAGTCAACAAGCTG+AGG | - | chr6_1:14285103-14285122 | Msa0876340:intron | 40.0% | |
| GTTCATAGTCAACAAGCTGA+GGG | - | chr6_1:14285104-14285123 | Msa0876340:intron | 40.0% | |
| GCTGCATATGTTGTCAATCA+TGG | + | chr6_1:14285337-14285356 | None:intergenic | 40.0% | |
| GAACACGATTGCAAGAATCT+TGG | - | chr6_1:14285370-14285389 | Msa0876340:intron | 40.0% | |
| TTGCAAGAATCTTGGATGAG+TGG | - | chr6_1:14285378-14285397 | Msa0876340:intron | 40.0% | |
| ! | TACGTGTTTTCCGTGCATTT+TGG | - | chr6_1:14285435-14285454 | Msa0876340:intron | 40.0% |
| !!! | TGGCGAATACCTTTTTTGCT+TGG | - | chr6_1:14285575-14285594 | Msa0876340:CDS | 40.0% |
| GCCTTCGTTAATAAGACACA+CGG | - | chr6_1:14285633-14285652 | Msa0876340:intron | 40.0% | |
| ! | ACCGTGTGTCTTATTAACGA+AGG | + | chr6_1:14285637-14285656 | None:intergenic | 40.0% |
| !!! | ACCGTGTATGTTTTGATGCA+CGG | - | chr6_1:14285810-14285829 | Msa0876340:CDS | 40.0% |
| ACCGTGCATCAAAACATACA+CGG | + | chr6_1:14285814-14285833 | None:intergenic | 40.0% | |
| GGAAAAATATGGAGGAGATG+AGG | + | chr6_1:14286141-14286160 | None:intergenic | 40.0% | |
| ! | ATATTTTTCCGTGTCTCCAC+CGG | - | chr6_1:14286151-14286170 | Msa0876340:intron | 40.0% |
| ATCATATCATCATCCCCATC+AGG | - | chr6_1:14286221-14286240 | Msa0876340:intron | 40.0% | |
| ! | GGATGTGTTAGGATGAGTTT+TGG | - | chr6_1:14286278-14286297 | Msa0876340:intron | 40.0% |
| CAAACCTTGTGTTCTTGAGA+AGG | - | chr6_1:14286521-14286540 | Msa0876340:intron | 40.0% | |
| CAAACCTTCTCAAGAACACA+AGG | + | chr6_1:14286528-14286547 | None:intergenic | 40.0% | |
| ! | ATGCCATTTGCATGACCTAA+TGG | - | chr6_1:14286757-14286776 | Msa0876340:five_prime_UTR | 40.0% |
| TGTTCTTAGGCGTTCTACTG+TGG | - | chr6_1:14284814-14284833 | Msa0876340:intron | 45.0% | |
| CGTTCTGCTGAAGACTGTAA+CGG | + | chr6_1:14284866-14284885 | None:intergenic | 45.0% | |
| CATCTCTTCACAAGCTGCAA+AGG | + | chr6_1:14284889-14284908 | None:intergenic | 45.0% | |
| AGGCTCCTTGTGATCAGTAA+TGG | + | chr6_1:14284925-14284944 | None:intergenic | 45.0% | |
| !! | TGTTCTGGATGCCTTTTAGG+TGG | - | chr6_1:14285055-14285074 | Msa0876340:intron | 45.0% |
| ! | GGGTTCTGATTCAAAAGCTG+CGG | - | chr6_1:14285124-14285143 | Msa0876340:intron | 45.0% |
| TCGAGCTCATATTTAGGCTC+AGG | - | chr6_1:14285202-14285221 | Msa0876340:intron | 45.0% | |
| CAGGTATTCGCCAAAATGCA+CGG | + | chr6_1:14285448-14285467 | None:intergenic | 45.0% | |
| TTGCGAGATTCTTGGATGAG+TGG | - | chr6_1:14285497-14285516 | Msa0876340:intron | 45.0% | |
| TATGCACTTTCCGTGCATTC+TGG | - | chr6_1:14285555-14285574 | Msa0876340:CDS | 45.0% | |
| ! | AAGGTATTCGCCAGAATGCA+CGG | + | chr6_1:14285568-14285587 | None:intergenic | 45.0% |
| TTCCTTCAACAGGAGAGTCA+CGG | - | chr6_1:14286092-14286111 | Msa0876340:intron | 45.0% | |
| GGAGACACGGAAAAATATGG+AGG | + | chr6_1:14286149-14286168 | None:intergenic | 45.0% | |
| GGTGGAGACACGGAAAAATA+TGG | + | chr6_1:14286152-14286171 | None:intergenic | 45.0% | |
| TCCTAACACATCCACCTTTG+CGG | + | chr6_1:14286271-14286290 | None:intergenic | 45.0% | |
| GTCGAACCCTTCTACTCTAA+CGG | + | chr6_1:14286318-14286337 | None:intergenic | 45.0% | |
| TGGAATGTTAAGCGACAGCA+GGG | + | chr6_1:14286373-14286392 | None:intergenic | 45.0% | |
| ATGGAATGTTAAGCGACAGC+AGG | + | chr6_1:14286374-14286393 | None:intergenic | 45.0% | |
| CAAAGTAGCTGGCTGCTACA+AGG | + | chr6_1:14284021-14284040 | None:intergenic | 50.0% | |
| AACGGTTCATCTTCGATGCC+AGG | + | chr6_1:14284848-14284867 | None:intergenic | 50.0% | |
| GCAGCTTGTGAAGAGATGAG+AGG | - | chr6_1:14284891-14284910 | Msa0876340:intron | 50.0% | |
| CGTGGCTTAGGACAAATGAG+AGG | + | chr6_1:14284945-14284964 | None:intergenic | 50.0% | |
| TCCTTCAACAGGAGAGTCAC+GGG | - | chr6_1:14286093-14286112 | Msa0876340:intron | 50.0% | |
| AATCGAGCATCCTGGACCAA+GGG | + | chr6_1:14286191-14286210 | None:intergenic | 50.0% | |
| AAATCGAGCATCCTGGACCA+AGG | + | chr6_1:14286192-14286211 | None:intergenic | 50.0% | |
| TTGGTCCAGGATGCTCGATT+TGG | - | chr6_1:14286191-14286210 | Msa0876340:intron | 50.0% | |
| CGTTTCCAAATCGAGCATCC+TGG | + | chr6_1:14286199-14286218 | None:intergenic | 50.0% | |
| TTGGAGATGGCAAGCCTGAT+GGG | + | chr6_1:14286238-14286257 | None:intergenic | 50.0% | |
| TTTGGAGATGGCAAGCCTGA+TGG | + | chr6_1:14286239-14286258 | None:intergenic | 50.0% | |
| CGGGATGCAGAATTTGGAGA+TGG | + | chr6_1:14286251-14286270 | None:intergenic | 50.0% | |
| CCTTTGCGGGATGCAGAATT+TGG | + | chr6_1:14286257-14286276 | None:intergenic | 50.0% | |
| CCAAATTCTGCATCCCGCAA+AGG | - | chr6_1:14286254-14286273 | Msa0876340:intron | 50.0% | |
| AATTCTGCATCCCGCAAAGG+TGG | - | chr6_1:14286257-14286276 | Msa0876340:intron | 50.0% | |
| CCTAACACATCCACCTTTGC+GGG | + | chr6_1:14286270-14286289 | None:intergenic | 50.0% | |
| AATTCTGGCGATCCCTGTTG+AGG | + | chr6_1:14286343-14286362 | None:intergenic | 50.0% | |
| TGGCTGCTACAAGGAAGGAG+AGG | + | chr6_1:14284012-14284031 | None:intergenic | 55.0% | |
| GTAGCTGGCTGCTACAAGGA+AGG | + | chr6_1:14284017-14284036 | None:intergenic | 55.0% | |
| TGTCCTAAGCCACGACGAGT+CGG | - | chr6_1:14284951-14284970 | Msa0876340:intron | 55.0% | |
| CCTTCAACAGGAGAGTCACG+GGG | - | chr6_1:14286094-14286113 | Msa0876340:intron | 55.0% | |
| AAGGGATTTGCAGCCCTGAC+CGG | + | chr6_1:14286173-14286192 | None:intergenic | 55.0% | |
| TGGAGATGGCAAGCCTGATG+GGG | + | chr6_1:14286237-14286256 | None:intergenic | 55.0% | |
| CCCGCAAAGGTGGATGTGTT+AGG | - | chr6_1:14286267-14286286 | Msa0876340:intron | 55.0% | |
| ACGGCTGCCGTTAGAGTAGA+AGG | - | chr6_1:14286308-14286327 | Msa0876340:intron | 55.0% | |
| CGGCTGCCGTTAGAGTAGAA+GGG | - | chr6_1:14286309-14286328 | Msa0876340:intron | 55.0% | |
| AAGGGTTCGACTGCCTCAAC+AGG | - | chr6_1:14286327-14286346 | Msa0876340:intron | 55.0% | |
| AGGGTTCGACTGCCTCAACA+GGG | - | chr6_1:14286328-14286347 | Msa0876340:intron | 55.0% | |
| CAGCAGGGACGCTTGAATTC+TGG | + | chr6_1:14286358-14286377 | None:intergenic | 55.0% | |
| GTCCTAAGCCACGACGAGTC+GGG | - | chr6_1:14284952-14284971 | Msa0876340:intron | 60.0% | |
| TCCTAAGCCACGACGAGTCG+GGG | - | chr6_1:14284953-14284972 | Msa0876340:intron | 60.0% | |
| CCCCGTGACTCTCCTGTTGA+AGG | + | chr6_1:14286097-14286116 | None:intergenic | 60.0% | |
| TTTCCGTGTCTCCACCGGTC+AGG | - | chr6_1:14286156-14286175 | Msa0876340:intron | 60.0% | |
| TTCCGTGTCTCCACCGGTCA+GGG | - | chr6_1:14286157-14286176 | Msa0876340:intron | 60.0% | |
| GGTCAGGGCTGCAAATCCCT+TGG | - | chr6_1:14286172-14286191 | Msa0876340:intron | 60.0% | |
| GGCTGCAAATCCCTTGGTCC+AGG | - | chr6_1:14286178-14286197 | Msa0876340:intron | 60.0% | |
| ! | ACCCCGACTCGTCGTGGCTT+AGG | + | chr6_1:14284957-14284976 | None:intergenic | 65.0% |
| ! | GACAAGACCCCGACTCGTCG+TGG | + | chr6_1:14284963-14284982 | None:intergenic | 65.0% |
| AGCCCTGACCGGTGGAGACA+CGG | + | chr6_1:14286162-14286181 | None:intergenic | 65.0% | |
| GGATTTGCAGCCCTGACCGG+TGG | + | chr6_1:14286170-14286189 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 14283918 | 14286812 | 14283918 | ID=Msa0876340;Name=Msa0876340 |
| chr6_1 | mRNA | 14283918 | 14286812 | 14283918 | ID=Msa0876340-mRNA-1;Parent=Msa0876340;Name=Msa0876340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=176|1|1|1|0.66|0.75|4|427|168 |
| chr6_1 | exon | 14283918 | 14284626 | 14283918 | ID=Msa0876340-mRNA-1:exon:4153;Parent=Msa0876340-mRNA-1 |
| chr6_1 | exon | 14285555 | 14285618 | 14285555 | ID=Msa0876340-mRNA-1:exon:4152;Parent=Msa0876340-mRNA-1 |
| chr6_1 | exon | 14285712 | 14285907 | 14285712 | ID=Msa0876340-mRNA-1:exon:4151;Parent=Msa0876340-mRNA-1 |
| chr6_1 | exon | 14286672 | 14286812 | 14286672 | ID=Msa0876340-mRNA-1:exon:4150;Parent=Msa0876340-mRNA-1 |
| chr6_1 | five_prime_UTR | 14286672 | 14286812 | 14286672 | ID=Msa0876340-mRNA-1:five_prime_utr;Parent=Msa0876340-mRNA-1 |
| chr6_1 | five_prime_UTR | 14285873 | 14285907 | 14285873 | ID=Msa0876340-mRNA-1:five_prime_utr;Parent=Msa0876340-mRNA-1 |
| chr6_1 | CDS | 14285712 | 14285872 | 14285712 | ID=Msa0876340-mRNA-1:cds;Parent=Msa0876340-mRNA-1 |
| chr6_1 | CDS | 14285555 | 14285618 | 14285555 | ID=Msa0876340-mRNA-1:cds;Parent=Msa0876340-mRNA-1 |
| chr6_1 | CDS | 14284345 | 14284626 | 14284345 | ID=Msa0876340-mRNA-1:cds;Parent=Msa0876340-mRNA-1 |
| chr6_1 | three_prime_UTR | 14283918 | 14284344 | 14283918 | ID=Msa0876340-mRNA-1:three_prime_utr;Parent=Msa0876340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
