Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264270 | XP_013465385.1 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 904 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264270 | sp|Q94B55|XB31_ARATH | 67.483 | 449 | 133 | 4 | 1 | 438 | 1 | 447 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264270 | A0A072VMS8 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 904 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222830 | Msa0264270 | 0.966243 | 1.162755e-125 | -8.615850e-47 |
| Msa0264270 | Msa0339220 | 0.871489 | 6.574614e-67 | -8.615850e-47 |
| Msa0264270 | Msa0387330 | 0.922106 | 1.511846e-88 | -8.615850e-47 |
| Msa0264270 | Msa0435000 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0264270 | Msa0979450 | 0.801032 | 1.090097e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264270 | MtrunA17_Chr2g0328031 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 904 |
| Msa0264270 | MtrunA17_Chr4g0031491 | 74.049 | 447 | 110 | 5 | 1 | 443 | 1 | 445 | 0.0 | 683 |
| Msa0264270 | MtrunA17_Chr4g0010051 | 61.593 | 427 | 149 | 7 | 18 | 438 | 25 | 442 | 0.0 | 521 |
| Msa0264270 | MtrunA17_Chr6g0472461 | 30.752 | 452 | 233 | 12 | 1 | 403 | 1 | 421 | 8.29e-45 | 163 |
| Msa0264270 | MtrunA17_Chr4g0073161 | 32.010 | 403 | 214 | 12 | 1 | 376 | 7 | 376 | 2.26e-41 | 154 |
| Msa0264270 | MtrunA17_Chr1g0203651 | 29.766 | 299 | 157 | 11 | 88 | 376 | 1 | 256 | 1.58e-21 | 95.9 |
| Msa0264270 | MtrunA17_Chr1g0212971 | 31.220 | 205 | 122 | 4 | 14 | 215 | 134 | 322 | 1.13e-18 | 88.6 |
| Msa0264270 | MtrunA17_Chr7g0276681 | 30.769 | 247 | 141 | 8 | 15 | 252 | 85 | 310 | 2.19e-17 | 84.3 |
| Msa0264270 | MtrunA17_Chr7g0263421 | 31.429 | 245 | 131 | 9 | 5 | 219 | 41 | 278 | 6.49e-17 | 82.8 |
| Msa0264270 | MtrunA17_Chr2g0293861 | 31.875 | 160 | 97 | 5 | 25 | 181 | 10 | 160 | 4.46e-15 | 73.9 |
| Msa0264270 | MtrunA17_Chr1g0196261 | 33.333 | 183 | 108 | 6 | 45 | 218 | 252 | 429 | 7.72e-15 | 76.3 |
| Msa0264270 | MtrunA17_Chr2g0327711 | 28.163 | 245 | 137 | 8 | 5 | 218 | 58 | 294 | 1.29e-14 | 75.9 |
| Msa0264270 | MtrunA17_Chr7g0263471 | 30.332 | 211 | 125 | 5 | 11 | 215 | 120 | 314 | 5.55e-14 | 73.9 |
| Msa0264270 | MtrunA17_Chr4g0030551 | 28.095 | 210 | 126 | 4 | 12 | 215 | 71 | 261 | 1.33e-13 | 72.8 |
| Msa0264270 | MtrunA17_Chr7g0274241 | 27.509 | 269 | 162 | 6 | 18 | 259 | 21 | 283 | 1.37e-13 | 72.4 |
| Msa0264270 | MtrunA17_Chr1g0161231 | 26.471 | 238 | 142 | 9 | 11 | 232 | 53 | 273 | 2.15e-13 | 72.0 |
| Msa0264270 | MtrunA17_Chr6g0461061 | 29.032 | 217 | 139 | 4 | 47 | 253 | 244 | 455 | 2.15e-12 | 68.9 |
| Msa0264270 | MtrunA17_Chr6g0461061 | 26.293 | 232 | 138 | 5 | 25 | 240 | 141 | 355 | 2.17e-12 | 68.9 |
| Msa0264270 | MtrunA17_Chr5g0439191 | 31.884 | 138 | 79 | 4 | 49 | 181 | 8 | 135 | 3.66e-12 | 64.7 |
| Msa0264270 | MtrunA17_Chr5g0406201 | 29.240 | 171 | 104 | 3 | 45 | 215 | 300 | 453 | 1.17e-11 | 66.6 |
| Msa0264270 | MtrunA17_Chr7g0262761 | 29.560 | 159 | 100 | 4 | 15 | 168 | 48 | 199 | 3.71e-11 | 62.8 |
| Msa0264270 | MtrunA17_Chr2g0303671 | 30.065 | 153 | 94 | 2 | 30 | 182 | 132 | 271 | 4.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264270 | AT2G28840.1 | 67.483 | 449 | 133 | 4 | 1 | 438 | 1 | 447 | 0.0 | 625 |
| Msa0264270 | AT2G28840.2 | 70.976 | 379 | 97 | 4 | 71 | 438 | 57 | 433 | 0.0 | 558 |
| Msa0264270 | AT5G07270.1 | 32.663 | 398 | 211 | 11 | 1 | 373 | 1 | 366 | 1.34e-41 | 154 |
| Msa0264270 | AT5G57740.1 | 31.188 | 404 | 213 | 10 | 1 | 373 | 7 | 376 | 7.61e-39 | 147 |
| Msa0264270 | AT5G02620.4 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.48e-19 | 90.5 |
| Msa0264270 | AT5G02620.1 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.48e-19 | 90.5 |
| Msa0264270 | AT5G02620.3 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.48e-19 | 90.5 |
| Msa0264270 | AT5G02620.5 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 1.86e-17 | 85.1 |
| Msa0264270 | AT5G02620.2 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 1.86e-17 | 85.1 |
| Msa0264270 | AT3G04710.1 | 31.154 | 260 | 146 | 8 | 22 | 254 | 25 | 278 | 2.40e-17 | 84.3 |
| Msa0264270 | AT3G04710.3 | 30.000 | 300 | 166 | 11 | 22 | 294 | 249 | 531 | 2.42e-17 | 85.1 |
| Msa0264270 | AT3G12360.2 | 30.556 | 216 | 132 | 5 | 14 | 225 | 120 | 321 | 4.28e-17 | 84.0 |
| Msa0264270 | AT3G12360.1 | 30.556 | 216 | 132 | 5 | 14 | 225 | 132 | 333 | 4.62e-17 | 84.0 |
| Msa0264270 | AT5G60070.1 | 30.317 | 221 | 122 | 6 | 14 | 206 | 76 | 292 | 1.99e-16 | 82.0 |
| Msa0264270 | AT3G04710.2 | 31.154 | 260 | 145 | 9 | 22 | 254 | 25 | 277 | 4.11e-16 | 80.5 |
| Msa0264270 | AT1G07710.2 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 1.75e-15 | 79.0 |
| Msa0264270 | AT1G07710.1 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 1.75e-15 | 79.0 |
| Msa0264270 | AT2G31820.1 | 27.372 | 274 | 175 | 8 | 15 | 278 | 193 | 452 | 4.70e-14 | 74.7 |
| Msa0264270 | AT3G09550.2 | 29.064 | 203 | 127 | 5 | 15 | 215 | 154 | 341 | 2.08e-13 | 72.8 |
| Msa0264270 | AT3G09550.1 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.14e-13 | 72.8 |
| Msa0264270 | AT3G09550.3 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.14e-13 | 72.8 |
| Msa0264270 | AT5G20350.1 | 28.761 | 226 | 125 | 8 | 50 | 247 | 35 | 252 | 1.22e-12 | 70.5 |
| Msa0264270 | AT1G05640.1 | 26.573 | 286 | 178 | 11 | 15 | 286 | 157 | 424 | 1.95e-11 | 66.6 |
| Msa0264270 | AT5G51160.1 | 26.263 | 198 | 125 | 6 | 37 | 221 | 34 | 223 | 3.11e-11 | 65.5 |
| Msa0264270 | AT4G10720.2 | 30.526 | 190 | 125 | 4 | 15 | 200 | 41 | 227 | 4.60e-11 | 64.7 |
| Msa0264270 | AT4G10720.1 | 30.526 | 190 | 125 | 4 | 15 | 200 | 41 | 227 | 9.02e-11 | 63.9 |
Find 129 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATATTGATTGATGATTT+TGG | 0.077169 | 2_2:+64201397 | Msa0264270:three_prime_UTR |
| GAAGGAATAATATGTAATTT+TGG | 0.230377 | 2_2:+64200446 | Msa0264270:three_prime_UTR |
| TTACACTATGCTGCTTATTA+TGG | 0.234084 | 2_2:+64198503 | Msa0264270:CDS |
| CTAGTCATGTGACTGCTTCT+TGG | 0.257024 | 2_2:+64198567 | Msa0264270:CDS |
| CAGAAGAAAGAATAGCTTTA+AGG | 0.264068 | 2_2:-64198538 | None:intergenic |
| AGGTAAAATGAAAGTGAAAA+AGG | 0.265617 | 2_2:+64200423 | Msa0264270:three_prime_UTR |
| ACTATGTTGCTTCGACAAAA+TGG | 0.280496 | 2_2:-64200075 | None:intergenic |
| TTGATGTTTGATACGGTTAA+TGG | 0.291932 | 2_2:+64198470 | Msa0264270:CDS |
| TAATGATTCCATATTGGTTT+AGG | 0.298295 | 2_2:+64200370 | Msa0264270:three_prime_UTR |
| TCTAACAAGGCTTTGGCTTC+CGG | 0.299067 | 2_2:-64199510 | None:intergenic |
| AAAGGGTAAGTTTATGTTAT+GGG | 0.306875 | 2_2:+64201488 | Msa0264270:three_prime_UTR |
| TTAATAAGCAAAGTGAATTA+AGG | 0.308364 | 2_2:+64200469 | Msa0264270:three_prime_UTR |
| CAAATTTAATGATTCCATAT+TGG | 0.311125 | 2_2:+64200364 | Msa0264270:three_prime_UTR |
| TACCGCTGTCGTTCAAATTT+CGG | 0.312482 | 2_2:-64200194 | None:intergenic |
| CTTGTTAGAACAAGCTTTGA+TGG | 0.323868 | 2_2:+64199524 | Msa0264270:CDS |
| CGTATTCAGCGTGATTCATC+TGG | 0.341209 | 2_2:+64199017 | Msa0264270:CDS |
| AAAAGGGTAAGTTTATGTTA+TGG | 0.342971 | 2_2:+64201487 | Msa0264270:three_prime_UTR |
| AAGTTGGGCGTCCGAAGTTC+AGG | 0.350071 | 2_2:+64200255 | Msa0264270:CDS |
| CTTCATATTGCTGCTGCTAA+TGG | 0.351267 | 2_2:+64198001 | Msa0264270:CDS |
| AACTTCACCTCTGGTTTGAA+TGG | 0.356592 | 2_2:-64197800 | None:intergenic |
| TGTGCTTCGACCGGTAGATA+TGG | 0.358247 | 2_2:+64198810 | Msa0264270:CDS |
| AATAGAATATGTACACATTC+AGG | 0.364281 | 2_2:-64198768 | None:intergenic |
| AAGCAACATAGTTAGACTTA+TGG | 0.364923 | 2_2:+64200086 | Msa0264270:CDS |
| GACATATCTCCAACAACATT+TGG | 0.375388 | 2_2:-64200513 | None:intergenic |
| TAGTGTGTCGTTCGGAAAGT+TGG | 0.387276 | 2_2:+64200239 | Msa0264270:CDS |
| AGCTTGTTCTAACAAGGCTT+TGG | 0.389126 | 2_2:-64199517 | None:intergenic |
| CATCTGCTGAGCCTCTTGTT+TGG | 0.394206 | 2_2:+64199454 | Msa0264270:CDS |
| CAATTTGAAGGTTACCTTGT+TGG | 0.396080 | 2_2:-64197910 | None:intergenic |
| TTACCGTGCCTAAACCAATA+TGG | 0.402775 | 2_2:-64200378 | None:intergenic |
| AATGGATGAGCCACCTAGTT+TGG | 0.413371 | 2_2:-64197782 | None:intergenic |
| GGGTGCGACGCCGTTACATT+TGG | 0.413527 | 2_2:+64198728 | Msa0264270:CDS |
| ACAGAGTTGTTACAATTTGA+AGG | 0.414832 | 2_2:-64197922 | None:intergenic |
| CCCTTCATCTTGCTGCTAGA+GGG | 0.415274 | 2_2:+64198949 | Msa0264270:CDS |
| GTATATGATTTCTCTTGAAA+AGG | 0.415878 | 2_2:+64201470 | Msa0264270:three_prime_UTR |
| TGATTGTATTCGTGAATTGT+TGG | 0.428838 | 2_2:+64198980 | Msa0264270:CDS |
| AGACCTTGACCCATGTTGTC+GGG | 0.433754 | 2_2:-64197845 | None:intergenic |
| AGTGTGTCGTTCGGAAAGTT+GGG | 0.435757 | 2_2:+64200240 | Msa0264270:CDS |
| CTTCGACAAAATGGACAAAC+TGG | 0.445468 | 2_2:-64200066 | None:intergenic |
| CGGGGAGAGGGGAAGTTAAG+TGG | 0.445495 | 2_2:-64197826 | None:intergenic |
| TGCATTGCAGCCAACATAAG+AGG | 0.455233 | 2_2:-64198309 | None:intergenic |
| CCCCTTCATCTTGCTGCTAG+AGG | 0.458363 | 2_2:+64198948 | Msa0264270:CDS |
| ATTCATCAGTGAACTTAATC+CGG | 0.460718 | 2_2:+64199491 | Msa0264270:CDS |
| TATATGATTTCTCTTGAAAA+GGG | 0.460995 | 2_2:+64201471 | Msa0264270:three_prime_UTR |
| CAGGAAGGGTTGCTGCTGAA+TGG | 0.461974 | 2_2:+64200274 | Msa0264270:CDS |
| AAGGGAGAAAGATATATTGA+AGG | 0.462497 | 2_2:+64199560 | Msa0264270:CDS |
| AGATGAAGGGGAGTACTTCC+AGG | 0.465349 | 2_2:-64198936 | None:intergenic |
| TGATGGATGCAAACAGAGAA+AGG | 0.466607 | 2_2:+64199541 | Msa0264270:CDS |
| GTGCTTCGACCGGTAGATAT+GGG | 0.467851 | 2_2:+64198811 | Msa0264270:CDS |
| CGGTTTGTTGTAGCAACAAA+GGG | 0.467861 | 2_2:-64200016 | None:intergenic |
| CCCCTCTAGCAGCAAGATGA+AGG | 0.471186 | 2_2:-64198950 | None:intergenic |
| TTGGTTGTAGGGGATTTGTT+CGG | 0.476243 | 2_2:+64198682 | Msa0264270:intron |
| GAGTTATAGAAGTAGTTGTC+GGG | 0.479062 | 2_2:-64200041 | None:intergenic |
| ATAGAAGTAGTTGTCGGGTT+CGG | 0.479189 | 2_2:-64200036 | None:intergenic |
| AAGTGGTTGAACTTCACCTC+TGG | 0.492479 | 2_2:-64197809 | None:intergenic |
| TATTCGTGAATTGTTGGCAT+GGG | 0.499232 | 2_2:+64198986 | Msa0264270:CDS |
| TGTTTCATAGCAACCATGTA+TGG | 0.499705 | 2_2:-64199396 | None:intergenic |
| GACCCATGTTGTCGGGGAGA+GGG | 0.500762 | 2_2:-64197838 | None:intergenic |
| AGGGAGAAAGATATATTGAA+GGG | 0.502605 | 2_2:+64199561 | Msa0264270:CDS |
| CTGATGAATTTCAGTGGAGA+TGG | 0.506025 | 2_2:-64199477 | None:intergenic |
| TGACCCATGTTGTCGGGGAG+AGG | 0.506252 | 2_2:-64197839 | None:intergenic |
| GGAGTTATAGAAGTAGTTGT+CGG | 0.511884 | 2_2:-64200042 | None:intergenic |
| GCTCTTGTTTGTGCTTCGAC+CGG | 0.514971 | 2_2:+64198801 | Msa0264270:CDS |
| AGGTAGGTACCAAATGTTGT+TGG | 0.515990 | 2_2:+64200504 | Msa0264270:three_prime_UTR |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.517837 | 2_2:+64199936 | Msa0264270:CDS |
| ATTATATCACTCACCAAACT+AGG | 0.518766 | 2_2:+64197769 | Msa0264270:five_prime_UTR |
| CATCAAAGCTTGTTCTAACA+AGG | 0.519785 | 2_2:-64199523 | None:intergenic |
| CTTATGTTGGCTGCAATGCA+TGG | 0.523935 | 2_2:+64198312 | Msa0264270:CDS |
| ATGTGCATTGTGCACACATT+TGG | 0.527928 | 2_2:-64199990 | None:intergenic |
| CTTCATCTTGCTGCTAGAGG+GGG | 0.528164 | 2_2:+64198951 | Msa0264270:CDS |
| TTCCCCTCTCCCCGACAACA+TGG | 0.529521 | 2_2:+64197835 | Msa0264270:exon |
| ACCCATGTTGTCGGGGAGAG+GGG | 0.533190 | 2_2:-64197837 | None:intergenic |
| ACAATTGAAGTTCAGAATTG+TGG | 0.536648 | 2_2:+64199964 | Msa0264270:CDS |
| TGCAGAGGTAACAATGATCA+TGG | 0.538975 | 2_2:+64197872 | Msa0264270:CDS |
| AATTAAGGCAAAGAAGTTCA+AGG | 0.539651 | 2_2:+64200484 | Msa0264270:three_prime_UTR |
| CCCTCTAGCAGCAAGATGAA+GGG | 0.539664 | 2_2:-64198949 | None:intergenic |
| CCTTCATCTTGCTGCTAGAG+GGG | 0.539952 | 2_2:+64198950 | Msa0264270:CDS |
| TGTGAATGTTAGAGATGGAA+AGG | 0.540835 | 2_2:+64198707 | Msa0264270:CDS |
| ATGCAGGCGTATACCATACA+TGG | 0.545210 | 2_2:+64199383 | Msa0264270:intron |
| GGATTATCTAGTGTGTCGTT+CGG | 0.546546 | 2_2:+64200231 | Msa0264270:CDS |
| AAGACCTTGACCCATGTTGT+CGG | 0.549293 | 2_2:-64197846 | None:intergenic |
| TCGGTTTGTTGTAGCAACAA+AGG | 0.550398 | 2_2:-64200017 | None:intergenic |
| CTCTTCATTGCTGTCCAACA+AGG | 0.550538 | 2_2:+64197896 | Msa0264270:CDS |
| AGCGGTAGTAGCAGCTTCAA+AGG | 0.552358 | 2_2:+64200210 | Msa0264270:CDS |
| CGGTTTGTGAATGTTAGAGA+TGG | 0.552849 | 2_2:+64198702 | Msa0264270:CDS |
| GATGGATGCAAACAGAGAAA+GGG | 0.553678 | 2_2:+64199542 | Msa0264270:CDS |
| CTCCCCGACAACATGGGTCA+AGG | 0.556059 | 2_2:+64197842 | Msa0264270:exon |
| GTTCAAAGATAAACAAGTTG+AGG | 0.560709 | 2_2:+64200166 | Msa0264270:CDS |
| CAGCAACCCTTCCTGAACTT+CGG | 0.563206 | 2_2:-64200266 | None:intergenic |
| AAGTGTGTGCTTAACCATCA+AGG | 0.563219 | 2_2:+64200403 | Msa0264270:three_prime_UTR |
| ACAAGAGGCTCAGCAGATGT+AGG | 0.576412 | 2_2:-64199450 | None:intergenic |
| GCATGGAAGGATTGCATGTG+TGG | 0.582025 | 2_2:+64198329 | Msa0264270:CDS |
| TGTTGGCTGCAATGCATGGA+AGG | 0.583065 | 2_2:+64198316 | Msa0264270:CDS |
| GTATTCGTGAATTGTTGGCA+TGG | 0.584740 | 2_2:+64198985 | Msa0264270:CDS |
| GTGAATGTTAGAGATGGAAA+GGG | 0.588584 | 2_2:+64198708 | Msa0264270:CDS |
| ATGTTGTTGGAGATATGTCA+AGG | 0.595837 | 2_2:+64200517 | Msa0264270:three_prime_UTR |
| AGTTCACTGATGAATTTCAG+TGG | 0.597323 | 2_2:-64199483 | None:intergenic |
| TCTACACAATCTGATTGTGA+TGG | 0.598122 | 2_2:-64199606 | None:intergenic |
| GTGGAGAAGCTACTTGAAGC+TGG | 0.601028 | 2_2:+64198348 | Msa0264270:CDS |
| TTCATCTTGCTGCTAGAGGG+GGG | 0.602142 | 2_2:+64198952 | Msa0264270:CDS |
| TCCCCTCTCCCCGACAACAT+GGG | 0.602202 | 2_2:+64197836 | Msa0264270:exon |
| GACCTTGACCCATGTTGTCG+GGG | 0.603308 | 2_2:-64197844 | None:intergenic |
| ATTTGGCATCTCGACAAAGA+CGG | 0.606723 | 2_2:+64198745 | Msa0264270:CDS |
| AGTGGAGATGGCCAAACAAG+AGG | 0.607832 | 2_2:-64199465 | None:intergenic |
| ATTCCATATTGGTTTAGGCA+CGG | 0.612688 | 2_2:+64200375 | Msa0264270:three_prime_UTR |
| AGATCAGTACCCATATCTAC+CGG | 0.613771 | 2_2:-64198820 | None:intergenic |
| AGCAGATGTAGGATTTAGCA+AGG | 0.613787 | 2_2:-64199439 | None:intergenic |
| TGGGCGTCCGAAGTTCAGGA+AGG | 0.616206 | 2_2:+64200259 | Msa0264270:CDS |
| GTATTCAGCGTGATTCATCT+GGG | 0.618936 | 2_2:+64199018 | Msa0264270:CDS |
| TGTCGAGATGCCAAATGTAA+CGG | 0.619258 | 2_2:-64198738 | None:intergenic |
| GGGCGTCCGAAGTTCAGGAA+GGG | 0.620530 | 2_2:+64200260 | Msa0264270:CDS |
| AAGGCAAAGAAGTTCAAGGT+AGG | 0.622174 | 2_2:+64200488 | Msa0264270:three_prime_UTR |
| CCTCTAGCAGCAAGATGAAG+GGG | 0.627465 | 2_2:-64198948 | None:intergenic |
| CAATCTGATTGTGATGGAGA+CGG | 0.634456 | 2_2:-64199600 | None:intergenic |
| CGACAAAATGGACAAACTGG+TGG | 0.636725 | 2_2:-64200063 | None:intergenic |
| TTAGCAGCAGCAATATGAAG+AGG | 0.637344 | 2_2:-64197998 | None:intergenic |
| GGCTCATCCATTCAAACCAG+AGG | 0.639756 | 2_2:+64197793 | Msa0264270:five_prime_UTR |
| GGTCAAGGTCTTAGTTGCAG+AGG | 0.642603 | 2_2:+64197857 | Msa0264270:CDS |
| ATTCGTGAATTGTTGGCATG+GGG | 0.650106 | 2_2:+64198987 | Msa0264270:CDS |
| GGGAGAAAGATATATTGAAG+GGG | 0.658402 | 2_2:+64199562 | Msa0264270:CDS |
| TGCTGCTAATGGCCAGATCG+AGG | 0.658793 | 2_2:+64198012 | Msa0264270:CDS |
| ATGATGCACAGTGGCTAGTG+TGG | 0.667440 | 2_2:+64200308 | Msa0264270:exon |
| CTCCGAAATTTGAACGACAG+CGG | 0.698163 | 2_2:+64200192 | Msa0264270:CDS |
| ATATCACTCACCAAACTAGG+TGG | 0.698905 | 2_2:+64197772 | Msa0264270:five_prime_UTR |
| CTGACTGTGTCAGTGAATAG+CGG | 0.699136 | 2_2:-64197582 | None:intergenic |
| GTACATATTCTATTAGACAG+TGG | 0.720585 | 2_2:+64198777 | Msa0264270:CDS |
| GTTGCTATGAAACACAGACA+CGG | 0.736330 | 2_2:+64199405 | Msa0264270:CDS |
| TGTAGATGACAATATCTCCG+AGG | 0.741974 | 2_2:+64199623 | Msa0264270:CDS |
| AAATACAAAAGAGAAAGACA+AGG | 0.747100 | 2_2:+64201581 | Msa0264270:three_prime_UTR |
| TGATAAAGAATGATGCACAG+TGG | 0.766592 | 2_2:+64200299 | Msa0264270:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATGTTTTTGAAT+TGG | + | chr2_2:64198663-64198682 | Msa0264270:intron | 10.0% |
| !!! | AAGCAATATTAATTTTAATT+GGG | - | chr2_2:64201363-64201382 | None:intergenic | 10.0% |
| !!! | AATTATTCTGAAAAAGAAAA+AGG | - | chr2_2:64198598-64198617 | None:intergenic | 15.0% |
| !! | AAATTCAGTTTAAATTCATT+TGG | - | chr2_2:64199758-64199777 | None:intergenic | 15.0% |
| !!! | TATAATGCAAATTTTAAACT+TGG | - | chr2_2:64199845-64199864 | None:intergenic | 15.0% |
| !! | TAAGTGTTATATCAATTAAA+AGG | + | chr2_2:64200545-64200564 | Msa0264270:intron | 15.0% |
| !! | AAAAGAGAAAGAAAAAAATA+TGG | + | chr2_2:64201234-64201253 | Msa0264270:intron | 15.0% |
| !!! | AATATTAATTTTAATTGGGT+GGG | - | chr2_2:64201359-64201378 | None:intergenic | 15.0% |
| !!! | CAAGCAATATTAATTTTAAT+TGG | - | chr2_2:64201364-64201383 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTATTGCTAAAA+TGG | - | chr2_2:64201569-64201588 | None:intergenic | 15.0% |
| !!! | AATTCTTTTTCCTTATTTTC+TGG | + | chr2_2:64198037-64198056 | Msa0264270:intron | 20.0% |
| !!! | TTTTTTCGATTTAAAACATC+TGG | - | chr2_2:64198179-64198198 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATCGAAAAAAAC+AGG | + | chr2_2:64198181-64198200 | Msa0264270:CDS | 20.0% |
| !! | AAAAAACACAATGCAAAATA+AGG | - | chr2_2:64198224-64198243 | None:intergenic | 20.0% |
| !!! | TTATTTTGCATTGTGTTTTT+TGG | + | chr2_2:64198223-64198242 | Msa0264270:intron | 20.0% |
| !! | TGTTAATCCATATATGAATT+TGG | + | chr2_2:64198410-64198429 | Msa0264270:intron | 20.0% |
| !!! | CAATTTTCCAAATTCATATA+TGG | - | chr2_2:64198420-64198439 | None:intergenic | 20.0% |
| !! | ATAATTCATCTTCATTTATG+TGG | + | chr2_2:64199078-64199097 | Msa0264270:intron | 20.0% |
| !! | ATTGTAACTTCTCAAATTTA+AGG | + | chr2_2:64199236-64199255 | Msa0264270:intron | 20.0% |
| !! | TTATCATTTGTTTCAATCAT+AGG | + | chr2_2:64199798-64199817 | Msa0264270:intron | 20.0% |
| !! | CAAATTTAATGATTCCATAT+TGG | + | chr2_2:64200364-64200383 | Msa0264270:three_prime_UTR | 20.0% |
| !!! | GAAGGAATAATATGTAATTT+TGG | + | chr2_2:64200446-64200465 | Msa0264270:three_prime_UTR | 20.0% |
| !! | TTAATAAGCAAAGTGAATTA+AGG | + | chr2_2:64200469-64200488 | Msa0264270:three_prime_UTR | 20.0% |
| !! | ATGTTCCTTATTAAATCTAA+TGG | - | chr2_2:64200627-64200646 | None:intergenic | 20.0% |
| !! | AGAAAAAGATAAAACTTTAC+TGG | + | chr2_2:64200859-64200878 | Msa0264270:intron | 20.0% |
| !! | AAATGAAACAAGTAGATTAA+TGG | - | chr2_2:64200930-64200949 | None:intergenic | 20.0% |
| !!! | GAAAGTTTTTTTTTTACCAT+TGG | - | chr2_2:64201299-64201318 | None:intergenic | 20.0% |
| !!! | ATATTAATTTTAATTGGGTG+GGG | - | chr2_2:64201358-64201377 | None:intergenic | 20.0% |
| !!! | CAATATTAATTTTAATTGGG+TGG | - | chr2_2:64201360-64201379 | None:intergenic | 20.0% |
| !!! | ATCATATTGATTGATGATTT+TGG | + | chr2_2:64201397-64201416 | Msa0264270:three_prime_UTR | 20.0% |
| !!! | TCATATTGATTGATGATTTT+GGG | + | chr2_2:64201398-64201417 | Msa0264270:three_prime_UTR | 20.0% |
| !! | TATATGATTTCTCTTGAAAA+GGG | + | chr2_2:64201471-64201490 | Msa0264270:three_prime_UTR | 20.0% |
| ! | AAATCGAAAAAAACAGGTAA+TGG | + | chr2_2:64198187-64198206 | Msa0264270:intron | 25.0% |
| ! | GAAAAAAGGGTTAATCAAAA+AGG | - | chr2_2:64198284-64198303 | None:intergenic | 25.0% |
| !!! | TCAGAATAATTCTTTTTTCC+TGG | + | chr2_2:64198607-64198626 | Msa0264270:intron | 25.0% |
| !!! | AATGTTTTTGAATTGGTTGT+AGG | + | chr2_2:64198670-64198689 | Msa0264270:intron | 25.0% |
| !!! | ATGTTTTTGAATTGGTTGTA+GGG | + | chr2_2:64198671-64198690 | Msa0264270:intron | 25.0% |
| ! | AATAGAATATGTACACATTC+AGG | - | chr2_2:64198771-64198790 | None:intergenic | 25.0% |
| !! | ATCAAACATCTAAGTCTTTT+AGG | + | chr2_2:64199154-64199173 | Msa0264270:intron | 25.0% |
| !!! | TTAGCTGTTTTAAAGTTGAA+TGG | + | chr2_2:64199282-64199301 | Msa0264270:intron | 25.0% |
| !! | ATGGATTGTAGCATTTAATT+AGG | + | chr2_2:64199301-64199320 | Msa0264270:intron | 25.0% |
| ! | AGGGATAAAATAATTGATGA+GGG | - | chr2_2:64199337-64199356 | None:intergenic | 25.0% |
| ! | TAGGGATAAAATAATTGATG+AGG | - | chr2_2:64199338-64199357 | None:intergenic | 25.0% |
| ! | CCAAACAACATGAAAATTTA+GGG | - | chr2_2:64199356-64199375 | None:intergenic | 25.0% |
| ! | ACCAAACAACATGAAAATTT+AGG | - | chr2_2:64199357-64199376 | None:intergenic | 25.0% |
| ! | AATTGCAAAACACAAGAATT+TGG | - | chr2_2:64199686-64199705 | None:intergenic | 25.0% |
| !!! | TGAGAATGCTATTTCTTTTT+TGG | - | chr2_2:64199876-64199895 | None:intergenic | 25.0% |
| !!! | TAATGATTCCATATTGGTTT+AGG | + | chr2_2:64200370-64200389 | Msa0264270:three_prime_UTR | 25.0% |
| ! | AGGTAAAATGAAAGTGAAAA+AGG | + | chr2_2:64200423-64200442 | Msa0264270:three_prime_UTR | 25.0% |
| ! | GGTAAAATGAAAGTGAAAAA+GGG | + | chr2_2:64200424-64200443 | Msa0264270:three_prime_UTR | 25.0% |
| ! | GTGTTATATCAATTAAAAGG+TGG | + | chr2_2:64200548-64200567 | Msa0264270:intron | 25.0% |
| ! | TCTGACCATTAGATTTAATA+AGG | + | chr2_2:64200619-64200638 | Msa0264270:intron | 25.0% |
| !!! | GTTTTGTTCTTCATCTAAAA+TGG | + | chr2_2:64200884-64200903 | Msa0264270:intron | 25.0% |
| !!! | TTCTTTGAAATTGTGACAAA+AGG | + | chr2_2:64201011-64201030 | Msa0264270:intron | 25.0% |
| !!! | TCTTTGAAATTGTGACAAAA+GGG | + | chr2_2:64201012-64201031 | Msa0264270:intron | 25.0% |
| ! | CTTGAGAATCATTTAGATTT+AGG | - | chr2_2:64201062-64201081 | None:intergenic | 25.0% |
| !! | TACACAAGACAGATTTTAAA+TGG | + | chr2_2:64201090-64201109 | Msa0264270:intron | 25.0% |
| ! | GAAAGAAAAAAATATGGTGT+AGG | + | chr2_2:64201240-64201259 | Msa0264270:intron | 25.0% |
| !! | TTTTTACCATTGGATTAAAG+AGG | - | chr2_2:64201289-64201308 | None:intergenic | 25.0% |
| ! | GTAAAAAAAAAACTTTCCCA+TGG | + | chr2_2:64201302-64201321 | Msa0264270:intron | 25.0% |
| ! | GTATATGATTTCTCTTGAAA+AGG | + | chr2_2:64201470-64201489 | Msa0264270:three_prime_UTR | 25.0% |
| ! | AAAAGGGTAAGTTTATGTTA+TGG | + | chr2_2:64201487-64201506 | Msa0264270:three_prime_UTR | 25.0% |
| ! | AAAGGGTAAGTTTATGTTAT+GGG | + | chr2_2:64201488-64201507 | Msa0264270:three_prime_UTR | 25.0% |
| ATTATATCACTCACCAAACT+AGG | + | chr2_2:64197769-64197788 | Msa0264270:five_prime_UTR | 30.0% | |
| ACAGAGTTGTTACAATTTGA+AGG | - | chr2_2:64197925-64197944 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGGAAAAGAGAA+GGG | - | chr2_2:64197958-64197977 | None:intergenic | 30.0% |
| !!! | AACGATCAAAGAGAGTTTTT+TGG | - | chr2_2:64197973-64197992 | None:intergenic | 30.0% |
| !! | TTTTGTTTCAGATTCTGTCA+AGG | + | chr2_2:64198132-64198151 | Msa0264270:intron | 30.0% |
| ATAAGAGGAGTCTGAAAAAA+GGG | - | chr2_2:64198297-64198316 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGATGTG+TGG | + | chr2_2:64198425-64198444 | Msa0264270:intron | 30.0% | |
| TGGAAACTATGAAAATCTTC+AGG | + | chr2_2:64198445-64198464 | Msa0264270:intron | 30.0% | |
| !! | TCAGGTTTTGATGTTTGATA+CGG | + | chr2_2:64198463-64198482 | Msa0264270:intron | 30.0% |
| TTGATGTTTGATACGGTTAA+TGG | + | chr2_2:64198470-64198489 | Msa0264270:CDS | 30.0% | |
| ! | TTACACTATGCTGCTTATTA+TGG | + | chr2_2:64198503-64198522 | Msa0264270:CDS | 30.0% |
| !! | TAGCTTTAAGGCAAGAAAAA+TGG | - | chr2_2:64198529-64198548 | None:intergenic | 30.0% |
| ! | CAGAAGAAAGAATAGCTTTA+AGG | - | chr2_2:64198541-64198560 | None:intergenic | 30.0% |
| !! | TGTTTTTGAATTGGTTGTAG+GGG | + | chr2_2:64198672-64198691 | Msa0264270:intron | 30.0% |
| GTACATATTCTATTAGACAG+TGG | + | chr2_2:64198777-64198796 | Msa0264270:CDS | 30.0% | |
| ACTGATCTCTCAATATTCTA+TGG | + | chr2_2:64198835-64198854 | Msa0264270:intron | 30.0% | |
| TGATTGTATTCGTGAATTGT+TGG | + | chr2_2:64198980-64198999 | Msa0264270:CDS | 30.0% | |
| TCTTCATTTATGTGGCTTAT+TGG | + | chr2_2:64199086-64199105 | Msa0264270:intron | 30.0% | |
| GGGATAAAATAATTGATGAG+GGG | - | chr2_2:64199336-64199355 | None:intergenic | 30.0% | |
| ! | CCCTAAATTTTCATGTTGTT+TGG | + | chr2_2:64199353-64199372 | Msa0264270:intron | 30.0% |
| ATTCATCAGTGAACTTAATC+CGG | + | chr2_2:64199491-64199510 | Msa0264270:CDS | 30.0% | |
| AAGGGAGAAAGATATATTGA+AGG | + | chr2_2:64199560-64199579 | Msa0264270:CDS | 30.0% | |
| AGGGAGAAAGATATATTGAA+GGG | + | chr2_2:64199561-64199580 | Msa0264270:CDS | 30.0% | |
| AAGAAATAGCATTCTCATTG+TGG | + | chr2_2:64199879-64199898 | Msa0264270:intron | 30.0% | |
| TGTGGAATATGATATTATGC+AGG | + | chr2_2:64199897-64199916 | Msa0264270:intron | 30.0% | |
| ACAATTGAAGTTCAGAATTG+TGG | + | chr2_2:64199964-64199983 | Msa0264270:CDS | 30.0% | |
| AAGCAACATAGTTAGACTTA+TGG | + | chr2_2:64200086-64200105 | Msa0264270:CDS | 30.0% | |
| GTTCAAAGATAAACAAGTTG+AGG | + | chr2_2:64200166-64200185 | Msa0264270:CDS | 30.0% | |
| ! | TCACTTTCATTTTACCTTGA+TGG | - | chr2_2:64200420-64200439 | None:intergenic | 30.0% |
| AAATGAAAGTGAAAAAGGGA+AGG | + | chr2_2:64200428-64200447 | Msa0264270:three_prime_UTR | 30.0% | |
| AATTAAGGCAAAGAAGTTCA+AGG | + | chr2_2:64200484-64200503 | Msa0264270:three_prime_UTR | 30.0% | |
| TTAAAAGGTGGCATTTAGTA+TGG | + | chr2_2:64200560-64200579 | Msa0264270:intron | 30.0% | |
| TAAAAGGTGGCATTTAGTAT+GGG | + | chr2_2:64200561-64200580 | Msa0264270:intron | 30.0% | |
| ! | TTCTTCATCTAAAATGGTAG+AGG | + | chr2_2:64200890-64200909 | Msa0264270:intron | 30.0% |
| TTAGCAGAGATAGAGAAAAT+TGG | - | chr2_2:64200968-64200987 | None:intergenic | 30.0% | |
| TCATGATGCAATTCAATAAC+TGG | + | chr2_2:64201168-64201187 | Msa0264270:intron | 30.0% | |
| CATGATGCAATTCAATAACT+GGG | + | chr2_2:64201169-64201188 | Msa0264270:intron | 30.0% | |
| AAAAAAAAACTTTCCCATGG+TGG | + | chr2_2:64201305-64201324 | Msa0264270:intron | 30.0% | |
| AAAAAAAACTTTCCCATGGT+GGG | + | chr2_2:64201306-64201325 | Msa0264270:intron | 30.0% | |
| CAATTTGAAGGTTACCTTGT+TGG | - | chr2_2:64197913-64197932 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGTGGAAAAGAGA+AGG | - | chr2_2:64197959-64197978 | None:intergenic | 35.0% |
| !!! | GATCAAAGAGAGTTTTTTGG+TGG | - | chr2_2:64197970-64197989 | None:intergenic | 35.0% |
| AAAAAGAATTCACCTCGATC+TGG | - | chr2_2:64198027-64198046 | None:intergenic | 35.0% | |
| AGCAGAAATGCCAGAAAATA+AGG | - | chr2_2:64198050-64198069 | None:intergenic | 35.0% | |
| ! | ATTCTGTCAAGGCTTTTACA+TGG | + | chr2_2:64198143-64198162 | Msa0264270:CDS | 35.0% |
| ! | CGAAAAAAACAGGTAATGGT+TGG | + | chr2_2:64198191-64198210 | Msa0264270:intron | 35.0% |
| !!! | CATTGTGTTTTTTGGCATGT+TGG | + | chr2_2:64198231-64198250 | Msa0264270:intron | 35.0% |
| CATAAGAGGAGTCTGAAAAA+AGG | - | chr2_2:64198298-64198317 | None:intergenic | 35.0% | |
| ! | TTTTCAGACTCCTCTTATGT+TGG | + | chr2_2:64198299-64198318 | Msa0264270:intron | 35.0% |
| ! | AAGCTGGTGCTAATGTAATT+TGG | + | chr2_2:64198364-64198383 | Msa0264270:intron | 35.0% |
| ATCAAAGTCAAAGTCAATCC+AGG | - | chr2_2:64198628-64198647 | None:intergenic | 35.0% | |
| TGTGAATGTTAGAGATGGAA+AGG | + | chr2_2:64198707-64198726 | Msa0264270:CDS | 35.0% | |
| GTGAATGTTAGAGATGGAAA+GGG | + | chr2_2:64198708-64198727 | Msa0264270:CDS | 35.0% | |
| ! | TTGAAATTTTGCAGCTATCC+TGG | + | chr2_2:64198918-64198937 | Msa0264270:intron | 35.0% |
| TATTCGTGAATTGTTGGCAT+GGG | + | chr2_2:64198986-64199005 | Msa0264270:CDS | 35.0% | |
| !! | GTGGCTTATTGGTTTGTATA+TGG | + | chr2_2:64199097-64199116 | Msa0264270:intron | 35.0% |
| TGTTTCATAGCAACCATGTA+TGG | - | chr2_2:64199399-64199418 | None:intergenic | 35.0% | |
| AGTTCACTGATGAATTTCAG+TGG | - | chr2_2:64199486-64199505 | None:intergenic | 35.0% | |
| ! | CATCAAAGCTTGTTCTAACA+AGG | - | chr2_2:64199526-64199545 | None:intergenic | 35.0% |
| ! | CTTGTTAGAACAAGCTTTGA+TGG | + | chr2_2:64199524-64199543 | Msa0264270:CDS | 35.0% |
| GGGAGAAAGATATATTGAAG+GGG | + | chr2_2:64199562-64199581 | Msa0264270:CDS | 35.0% | |
| TCTACACAATCTGATTGTGA+TGG | - | chr2_2:64199609-64199628 | None:intergenic | 35.0% | |
| CAAAAGGAGTCAAATTACCT+CGG | - | chr2_2:64199643-64199662 | None:intergenic | 35.0% | |
| GGCTGAGAGATTTGATTATT+TGG | + | chr2_2:64199819-64199838 | Msa0264270:intron | 35.0% | |
| GAGTTATAGAAGTAGTTGTC+GGG | - | chr2_2:64200044-64200063 | None:intergenic | 35.0% | |
| GGAGTTATAGAAGTAGTTGT+CGG | - | chr2_2:64200045-64200064 | None:intergenic | 35.0% | |
| ! | ACTATGTTGCTTCGACAAAA+TGG | - | chr2_2:64200078-64200097 | None:intergenic | 35.0% |
| TGATAAAGAATGATGCACAG+TGG | + | chr2_2:64200299-64200318 | Msa0264270:exon | 35.0% | |
| !! | ATTCCATATTGGTTTAGGCA+CGG | + | chr2_2:64200375-64200394 | Msa0264270:three_prime_UTR | 35.0% |
| GACATATCTCCAACAACATT+TGG | - | chr2_2:64200516-64200535 | None:intergenic | 35.0% | |
| ATGTTGTTGGAGATATGTCA+AGG | + | chr2_2:64200517-64200536 | Msa0264270:three_prime_UTR | 35.0% | |
| AGAAAAAACTTTCCCATGGT+GGG | - | chr2_2:64200602-64200621 | None:intergenic | 35.0% | |
| ATTTCAATCACTACTCATGG+AGG | - | chr2_2:64200761-64200780 | None:intergenic | 35.0% | |
| TCCATGAGTAGTGATTGAAA+TGG | + | chr2_2:64200760-64200779 | Msa0264270:intron | 35.0% | |
| ACCATTTCAATCACTACTCA+TGG | - | chr2_2:64200764-64200783 | None:intergenic | 35.0% | |
| TACAATGAACCAAGTTCCAA+GGG | - | chr2_2:64200809-64200828 | None:intergenic | 35.0% | |
| TTACAATGAACCAAGTTCCA+AGG | - | chr2_2:64200810-64200829 | None:intergenic | 35.0% | |
| ! | TAAAGCCTTTAAAGAGCAAG+AGG | + | chr2_2:64200827-64200846 | Msa0264270:intron | 35.0% |
| ! | AAAGCCTTTAAAGAGCAAGA+GGG | + | chr2_2:64200828-64200847 | Msa0264270:intron | 35.0% |
| AATTGTGACAAAAGGGTCAT+TGG | + | chr2_2:64201019-64201038 | Msa0264270:intron | 35.0% | |
| AGTACTCCTCTTTAATCCAA+TGG | + | chr2_2:64201280-64201299 | Msa0264270:intron | 35.0% | |
| ATATCACTCACCAAACTAGG+TGG | + | chr2_2:64197772-64197791 | Msa0264270:five_prime_UTR | 40.0% | |
| ! | AACTTCACCTCTGGTTTGAA+TGG | - | chr2_2:64197803-64197822 | None:intergenic | 40.0% |
| TGCAGAGGTAACAATGATCA+TGG | + | chr2_2:64197872-64197891 | Msa0264270:CDS | 40.0% | |
| TTAGCAGCAGCAATATGAAG+AGG | - | chr2_2:64198001-64198020 | None:intergenic | 40.0% | |
| CTTCATATTGCTGCTGCTAA+TGG | + | chr2_2:64198001-64198020 | Msa0264270:CDS | 40.0% | |
| ! | TTGGTTGTAGGGGATTTGTT+CGG | + | chr2_2:64198682-64198701 | Msa0264270:intron | 40.0% |
| CGGTTTGTGAATGTTAGAGA+TGG | + | chr2_2:64198702-64198721 | Msa0264270:CDS | 40.0% | |
| TGTCGAGATGCCAAATGTAA+CGG | - | chr2_2:64198741-64198760 | None:intergenic | 40.0% | |
| ATTTGGCATCTCGACAAAGA+CGG | + | chr2_2:64198745-64198764 | Msa0264270:CDS | 40.0% | |
| AGATCAGTACCCATATCTAC+CGG | - | chr2_2:64198823-64198842 | None:intergenic | 40.0% | |
| GTATTCGTGAATTGTTGGCA+TGG | + | chr2_2:64198985-64199004 | Msa0264270:CDS | 40.0% | |
| ATTCGTGAATTGTTGGCATG+GGG | + | chr2_2:64198987-64199006 | Msa0264270:CDS | 40.0% | |
| GTATTCAGCGTGATTCATCT+GGG | + | chr2_2:64199018-64199037 | Msa0264270:CDS | 40.0% | |
| GTTGCTATGAAACACAGACA+CGG | + | chr2_2:64199405-64199424 | Msa0264270:CDS | 40.0% | |
| AGCAGATGTAGGATTTAGCA+AGG | - | chr2_2:64199442-64199461 | None:intergenic | 40.0% | |
| CTGATGAATTTCAGTGGAGA+TGG | - | chr2_2:64199480-64199499 | None:intergenic | 40.0% | |
| ! | AGCTTGTTCTAACAAGGCTT+TGG | - | chr2_2:64199520-64199539 | None:intergenic | 40.0% |
| ! | TGATGGATGCAAACAGAGAA+AGG | + | chr2_2:64199541-64199560 | Msa0264270:CDS | 40.0% |
| GATGGATGCAAACAGAGAAA+GGG | + | chr2_2:64199542-64199561 | Msa0264270:CDS | 40.0% | |
| ! | CAATCTGATTGTGATGGAGA+CGG | - | chr2_2:64199603-64199622 | None:intergenic | 40.0% |
| TGTAGATGACAATATCTCCG+AGG | + | chr2_2:64199623-64199642 | Msa0264270:CDS | 40.0% | |
| ATGTGCATTGTGCACACATT+TGG | - | chr2_2:64199993-64200012 | None:intergenic | 40.0% | |
| !! | CGGTTTGTTGTAGCAACAAA+GGG | - | chr2_2:64200019-64200038 | None:intergenic | 40.0% |
| !! | TCGGTTTGTTGTAGCAACAA+AGG | - | chr2_2:64200020-64200039 | None:intergenic | 40.0% |
| ATAGAAGTAGTTGTCGGGTT+CGG | - | chr2_2:64200039-64200058 | None:intergenic | 40.0% | |
| CTTCGACAAAATGGACAAAC+TGG | - | chr2_2:64200069-64200088 | None:intergenic | 40.0% | |
| TACCGCTGTCGTTCAAATTT+CGG | - | chr2_2:64200197-64200216 | None:intergenic | 40.0% | |
| ! | GGATTATCTAGTGTGTCGTT+CGG | + | chr2_2:64200231-64200250 | Msa0264270:CDS | 40.0% |
| TTACCGTGCCTAAACCAATA+TGG | - | chr2_2:64200381-64200400 | None:intergenic | 40.0% | |
| AAGTGTGTGCTTAACCATCA+AGG | + | chr2_2:64200403-64200422 | Msa0264270:three_prime_UTR | 40.0% | |
| AAGGCAAAGAAGTTCAAGGT+AGG | + | chr2_2:64200488-64200507 | Msa0264270:three_prime_UTR | 40.0% | |
| AGGTAGGTACCAAATGTTGT+TGG | + | chr2_2:64200504-64200523 | Msa0264270:three_prime_UTR | 40.0% | |
| CAGAAAAAACTTTCCCATGG+TGG | - | chr2_2:64200603-64200622 | None:intergenic | 40.0% | |
| GGTCAGAAAAAACTTTCCCA+TGG | - | chr2_2:64200606-64200625 | None:intergenic | 40.0% | |
| TACTCATGGAGGTTGAATGA+GGG | - | chr2_2:64200750-64200769 | None:intergenic | 40.0% | |
| CTTTCCCTCTTGCTCTTTAA+AGG | - | chr2_2:64200835-64200854 | None:intergenic | 40.0% | |
| ACAAATTCACTCACGTTACC+TGG | - | chr2_2:64201146-64201165 | None:intergenic | 40.0% | |
| AATTGGGTGGGGTTTAGTAT+GGG | - | chr2_2:64201347-64201366 | None:intergenic | 40.0% | |
| TAATTGGGTGGGGTTTAGTA+TGG | - | chr2_2:64201348-64201367 | None:intergenic | 40.0% | |
| CTGACTGTGTCAGTGAATAG+CGG | - | chr2_2:64197585-64197604 | None:intergenic | 45.0% | |
| AATGGATGAGCCACCTAGTT+TGG | - | chr2_2:64197785-64197804 | None:intergenic | 45.0% | |
| AAGTGGTTGAACTTCACCTC+TGG | - | chr2_2:64197812-64197831 | None:intergenic | 45.0% | |
| AAGACCTTGACCCATGTTGT+CGG | - | chr2_2:64197849-64197868 | None:intergenic | 45.0% | |
| CTCTTCATTGCTGTCCAACA+AGG | + | chr2_2:64197896-64197915 | Msa0264270:CDS | 45.0% | |
| TGCATTGCAGCCAACATAAG+AGG | - | chr2_2:64198312-64198331 | None:intergenic | 45.0% | |
| ! | CTTATGTTGGCTGCAATGCA+TGG | + | chr2_2:64198312-64198331 | Msa0264270:CDS | 45.0% |
| CTAGTCATGTGACTGCTTCT+TGG | + | chr2_2:64198567-64198586 | Msa0264270:CDS | 45.0% | |
| CGTATTCAGCGTGATTCATC+TGG | + | chr2_2:64199017-64199036 | Msa0264270:CDS | 45.0% | |
| !! | GTTGTTTGGTGCGTTTATGC+AGG | + | chr2_2:64199367-64199386 | Msa0264270:intron | 45.0% |
| ATGCAGGCGTATACCATACA+TGG | + | chr2_2:64199383-64199402 | Msa0264270:intron | 45.0% | |
| ! | TCTAACAAGGCTTTGGCTTC+CGG | - | chr2_2:64199513-64199532 | None:intergenic | 45.0% |
| CGACAAAATGGACAAACTGG+TGG | - | chr2_2:64200066-64200085 | None:intergenic | 45.0% | |
| CTCCGAAATTTGAACGACAG+CGG | + | chr2_2:64200192-64200211 | Msa0264270:CDS | 45.0% | |
| ! | TAGTGTGTCGTTCGGAAAGT+TGG | + | chr2_2:64200239-64200258 | Msa0264270:CDS | 45.0% |
| ! | AGTGTGTCGTTCGGAAAGTT+GGG | + | chr2_2:64200240-64200259 | Msa0264270:CDS | 45.0% |
| GGTGGCATTTAGTATGGGAA+AGG | + | chr2_2:64200566-64200585 | Msa0264270:intron | 45.0% | |
| AGGATACTTGTTTCCCACCA+TGG | + | chr2_2:64200586-64200605 | Msa0264270:intron | 45.0% | |
| GGATACTTGTTTCCCACCAT+GGG | + | chr2_2:64200587-64200606 | Msa0264270:intron | 45.0% | |
| GATTGTGAGATTGCTGCAAG+TGG | - | chr2_2:64200711-64200730 | None:intergenic | 45.0% | |
| CTTGCAGCAATCTCACAATC+TGG | + | chr2_2:64200711-64200730 | Msa0264270:intron | 45.0% | |
| CTACTCATGGAGGTTGAATG+AGG | - | chr2_2:64200751-64200770 | None:intergenic | 45.0% | |
| CAACACAGTGACTAAACCCT+TGG | + | chr2_2:64200790-64200809 | Msa0264270:intron | 45.0% | |
| GTGACTAAACCCTTGGAACT+TGG | + | chr2_2:64200797-64200816 | Msa0264270:intron | 45.0% | |
| TCATGAACGTGATGTAGTCC+AGG | + | chr2_2:64201125-64201144 | Msa0264270:intron | 45.0% | |
| GTGGGGTTTAGTATGGGAAA+GGG | - | chr2_2:64201341-64201360 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr2_2:64197611-64197630 | None:intergenic | 50.0% | |
| GGCTCATCCATTCAAACCAG+AGG | + | chr2_2:64197793-64197812 | Msa0264270:five_prime_UTR | 50.0% | |
| AGACCTTGACCCATGTTGTC+GGG | - | chr2_2:64197848-64197867 | None:intergenic | 50.0% | |
| GGTCAAGGTCTTAGTTGCAG+AGG | + | chr2_2:64197857-64197876 | Msa0264270:CDS | 50.0% | |
| ! | TGTTGGCTGCAATGCATGGA+AGG | + | chr2_2:64198316-64198335 | Msa0264270:CDS | 50.0% |
| GCATGGAAGGATTGCATGTG+TGG | + | chr2_2:64198329-64198348 | Msa0264270:CDS | 50.0% | |
| GTGGAGAAGCTACTTGAAGC+TGG | + | chr2_2:64198348-64198367 | Msa0264270:CDS | 50.0% | |
| ! | GCTCTTGTTTGTGCTTCGAC+CGG | + | chr2_2:64198801-64198820 | Msa0264270:CDS | 50.0% |
| TGTGCTTCGACCGGTAGATA+TGG | + | chr2_2:64198810-64198829 | Msa0264270:CDS | 50.0% | |
| GTGCTTCGACCGGTAGATAT+GGG | + | chr2_2:64198811-64198830 | Msa0264270:CDS | 50.0% | |
| !! | AGATGAAGGGGAGTACTTCC+AGG | - | chr2_2:64198939-64198958 | None:intergenic | 50.0% |
| CCTCTAGCAGCAAGATGAAG+GGG | - | chr2_2:64198951-64198970 | None:intergenic | 50.0% | |
| CCCTCTAGCAGCAAGATGAA+GGG | - | chr2_2:64198952-64198971 | None:intergenic | 50.0% | |
| CCCTTCATCTTGCTGCTAGA+GGG | + | chr2_2:64198949-64198968 | Msa0264270:CDS | 50.0% | |
| CCTTCATCTTGCTGCTAGAG+GGG | + | chr2_2:64198950-64198969 | Msa0264270:CDS | 50.0% | |
| CTTCATCTTGCTGCTAGAGG+GGG | + | chr2_2:64198951-64198970 | Msa0264270:CDS | 50.0% | |
| TTCATCTTGCTGCTAGAGGG+GGG | + | chr2_2:64198952-64198971 | Msa0264270:CDS | 50.0% | |
| CAGCGTGATTCATCTGGGTA+TGG | + | chr2_2:64199023-64199042 | Msa0264270:intron | 50.0% | |
| ACAAGAGGCTCAGCAGATGT+AGG | - | chr2_2:64199453-64199472 | None:intergenic | 50.0% | |
| CATCTGCTGAGCCTCTTGTT+TGG | + | chr2_2:64199454-64199473 | Msa0264270:CDS | 50.0% | |
| AGTGGAGATGGCCAAACAAG+AGG | - | chr2_2:64199468-64199487 | None:intergenic | 50.0% | |
| TATGTGTGCACGCGGACAAA+AGG | - | chr2_2:64199659-64199678 | None:intergenic | 50.0% | |
| TTGGTGTGTATGTGTGCACG+CGG | - | chr2_2:64199667-64199686 | None:intergenic | 50.0% | |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr2_2:64199936-64199955 | Msa0264270:CDS | 50.0% |
| AGCGGTAGTAGCAGCTTCAA+AGG | + | chr2_2:64200210-64200229 | Msa0264270:CDS | 50.0% | |
| CAGCAACCCTTCCTGAACTT+CGG | - | chr2_2:64200269-64200288 | None:intergenic | 50.0% | |
| ATGATGCACAGTGGCTAGTG+TGG | + | chr2_2:64200308-64200327 | Msa0264270:exon | 50.0% | |
| GTGAGATTGCTGCAAGTGGT+GGG | - | chr2_2:64200707-64200726 | None:intergenic | 50.0% | |
| TGTGAGATTGCTGCAAGTGG+TGG | - | chr2_2:64200708-64200727 | None:intergenic | 50.0% | |
| ATGGAGGTTGAATGAGGGTG+AGG | - | chr2_2:64200745-64200764 | None:intergenic | 50.0% | |
| ! | GGGAAGTTGTTTCCCACCAT+GGG | - | chr2_2:64201321-64201340 | None:intergenic | 50.0% |
| ! | AGGGAAGTTGTTTCCCACCA+TGG | - | chr2_2:64201322-64201341 | None:intergenic | 50.0% |
| GGTGGGGTTTAGTATGGGAA+AGG | - | chr2_2:64201342-64201361 | None:intergenic | 50.0% | |
| GACCTTGACCCATGTTGTCG+GGG | - | chr2_2:64197847-64197866 | None:intergenic | 55.0% | |
| TGCTGCTAATGGCCAGATCG+AGG | + | chr2_2:64198012-64198031 | Msa0264270:CDS | 55.0% | |
| CCCCTTCATCTTGCTGCTAG+AGG | + | chr2_2:64198948-64198967 | Msa0264270:CDS | 55.0% | |
| CCCCTCTAGCAGCAAGATGA+AGG | - | chr2_2:64198953-64198972 | None:intergenic | 55.0% | |
| AAGTTGGGCGTCCGAAGTTC+AGG | + | chr2_2:64200255-64200274 | Msa0264270:CDS | 55.0% | |
| CAGGAAGGGTTGCTGCTGAA+TGG | + | chr2_2:64200274-64200293 | Msa0264270:CDS | 55.0% | |
| CGGGGAGAGGGGAAGTTAAG+TGG | - | chr2_2:64197829-64197848 | None:intergenic | 60.0% | |
| TTCCCCTCTCCCCGACAACA+TGG | + | chr2_2:64197835-64197854 | Msa0264270:exon | 60.0% | |
| TCCCCTCTCCCCGACAACAT+GGG | + | chr2_2:64197836-64197855 | Msa0264270:exon | 60.0% | |
| ACCCATGTTGTCGGGGAGAG+GGG | - | chr2_2:64197840-64197859 | None:intergenic | 60.0% | |
| GACCCATGTTGTCGGGGAGA+GGG | - | chr2_2:64197841-64197860 | None:intergenic | 60.0% | |
| TGACCCATGTTGTCGGGGAG+AGG | - | chr2_2:64197842-64197861 | None:intergenic | 60.0% | |
| CTCCCCGACAACATGGGTCA+AGG | + | chr2_2:64197842-64197861 | Msa0264270:exon | 60.0% | |
| GGGTGCGACGCCGTTACATT+TGG | + | chr2_2:64198728-64198747 | Msa0264270:CDS | 60.0% | |
| TGGGCGTCCGAAGTTCAGGA+AGG | + | chr2_2:64200259-64200278 | Msa0264270:CDS | 60.0% | |
| GGGCGTCCGAAGTTCAGGAA+GGG | + | chr2_2:64200260-64200279 | Msa0264270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64197582 | 64201603 | 64197582 | ID=Msa0264270;Name=Msa0264270 |
| chr2_2 | mRNA | 64197582 | 64201603 | 64197582 | ID=Msa0264270-mRNA-1;Parent=Msa0264270;Name=Msa0264270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=272|1|1|1|0.87|0.77|9|487|443 |
| chr2_2 | exon | 64197582 | 64198033 | 64197582 | ID=Msa0264270-mRNA-1:exon:20010;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64198143 | 64198202 | 64198143 | ID=Msa0264270-mRNA-1:exon:20011;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64198306 | 64198377 | 64198306 | ID=Msa0264270-mRNA-1:exon:20012;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64198467 | 64198588 | 64198467 | ID=Msa0264270-mRNA-1:exon:20013;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64198692 | 64198832 | 64198692 | ID=Msa0264270-mRNA-1:exon:20014;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64198932 | 64199039 | 64198932 | ID=Msa0264270-mRNA-1:exon:20015;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64199389 | 64199644 | 64199389 | ID=Msa0264270-mRNA-1:exon:20016;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64199919 | 64200559 | 64199919 | ID=Msa0264270-mRNA-1:exon:20017;Parent=Msa0264270-mRNA-1 |
| chr2_2 | exon | 64201365 | 64201603 | 64201365 | ID=Msa0264270-mRNA-1:exon:20018;Parent=Msa0264270-mRNA-1 |
| chr2_2 | five_prime_UTR | 64197582 | 64197853 | 64197582 | ID=Msa0264270-mRNA-1:five_prime_utr;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64197854 | 64198033 | 64197854 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64198143 | 64198202 | 64198143 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64198306 | 64198377 | 64198306 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64198467 | 64198588 | 64198467 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64198692 | 64198832 | 64198692 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64198932 | 64199039 | 64198932 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64199389 | 64199644 | 64199389 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | CDS | 64199919 | 64200311 | 64199919 | ID=Msa0264270-mRNA-1:cds;Parent=Msa0264270-mRNA-1 |
| chr2_2 | three_prime_UTR | 64200312 | 64200559 | 64200312 | ID=Msa0264270-mRNA-1:three_prime_utr;Parent=Msa0264270-mRNA-1 |
| chr2_2 | three_prime_UTR | 64201365 | 64201603 | 64201365 | ID=Msa0264270-mRNA-1:three_prime_utr;Parent=Msa0264270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
