Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981350 | XP_003624270.1 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.39e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981350 | sp|O80513|CCU41_ARATH | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.54e-102 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981350 | G7KTC0 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 2.10e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0981350 | Msa1068540 | 0.959133 | 4.155715e-117 | -8.615850e-47 |
| Msa0981350 | Msa1433100 | 0.956885 | 1.022981e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981350 | MtrunA17_Chr7g0250121 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.04e-151 | 417 |
| Msa0981350 | MtrunA17_Chr8g0335971 | 80.296 | 203 | 37 | 2 | 1 | 203 | 1 | 200 | 2.12e-115 | 327 |
| Msa0981350 | MtrunA17_Chr7g0259831 | 47.561 | 164 | 83 | 2 | 1 | 162 | 21 | 183 | 9.83e-53 | 168 |
| Msa0981350 | MtrunA17_Chr7g0231431 | 42.051 | 195 | 95 | 5 | 11 | 198 | 29 | 212 | 7.76e-48 | 156 |
| Msa0981350 | MtrunA17_Chr2g0322921 | 47.647 | 170 | 75 | 2 | 10 | 165 | 25 | 194 | 1.35e-46 | 153 |
| Msa0981350 | MtrunA17_Chr4g0012811 | 47.170 | 159 | 78 | 2 | 11 | 163 | 29 | 187 | 1.90e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981350 | AT2G44740.1 | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.66e-103 | 295 |
| Msa0981350 | AT5G61650.1 | 57.500 | 200 | 76 | 4 | 10 | 203 | 22 | 218 | 5.86e-73 | 220 |
| Msa0981350 | AT5G07450.1 | 62.874 | 167 | 55 | 2 | 1 | 165 | 16 | 177 | 1.14e-71 | 217 |
| Msa0981350 | AT2G45080.1 | 45.963 | 161 | 85 | 1 | 5 | 163 | 22 | 182 | 2.89e-47 | 155 |
| Msa0981350 | AT3G60550.1 | 44.848 | 165 | 85 | 2 | 5 | 163 | 24 | 188 | 5.20e-47 | 154 |
| Msa0981350 | AT3G63120.2 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa0981350 | AT3G63120.1 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa0981350 | AT3G21870.1 | 43.038 | 158 | 87 | 1 | 11 | 165 | 25 | 182 | 3.24e-44 | 147 |
| Msa0981350 | AT3G05327.1 | 44.099 | 161 | 83 | 2 | 11 | 164 | 31 | 191 | 5.37e-43 | 144 |
Find 43 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTGTTGTAGGAGTTTC+TGG | 0.074330 | 6_4:-20854145 | None:intergenic |
| TGAAGCATACATGGGTATTT+AGG | 0.186319 | 6_4:-20855462 | None:intergenic |
| CTTGAGTTGGACTTCCTATT+TGG | 0.193159 | 6_4:+20855316 | Msa0981350:CDS |
| TTGGACTTCCTATTTGGTTT+AGG | 0.206229 | 6_4:+20855322 | Msa0981350:CDS |
| TTAATTAACAAGTCATTAAT+TGG | 0.209078 | 6_4:-20855588 | None:intergenic |
| TGGACTTCCTATTTGGTTTA+GGG | 0.221178 | 6_4:+20855323 | Msa0981350:CDS |
| TGTTTGGAGTTACATTTAAA+TGG | 0.251111 | 6_4:-20855348 | None:intergenic |
| ACAGATTCTTCCTTAGGTTT+AGG | 0.280697 | 6_4:+20855433 | Msa0981350:CDS |
| GAAGCATACATGGGTATTTA+GGG | 0.294136 | 6_4:-20855461 | None:intergenic |
| ATAAGCTTTGGCATCTCATT+AGG | 0.304503 | 6_4:-20854071 | None:intergenic |
| GAAGAATCTGTAAAATTTAG+AGG | 0.323675 | 6_4:-20855421 | None:intergenic |
| GTAGTTCTGAATTGAGATAT+TGG | 0.346156 | 6_4:-20854195 | None:intergenic |
| TCATCATCATTTCACTTTGT+AGG | 0.347005 | 6_4:-20855393 | None:intergenic |
| TTCTTTCTTCTCTACTCAAA+AGG | 0.358241 | 6_4:+20854099 | Msa0981350:CDS |
| CAATAGGATTGGAAAGTGTT+TGG | 0.370597 | 6_4:-20855364 | None:intergenic |
| CTCAAGAAAGTTCATCTCTA+TGG | 0.376952 | 6_4:-20855299 | None:intergenic |
| ACTTTGTAGGTGAACACAAT+AGG | 0.377696 | 6_4:-20855380 | None:intergenic |
| AATGGAACCCTAAACCAAAT+AGG | 0.383885 | 6_4:-20855330 | None:intergenic |
| GAAAGAAAAGCTATAAGCTT+TGG | 0.385414 | 6_4:-20854083 | None:intergenic |
| GTTACTCATTACAAGTGTTA+TGG | 0.390377 | 6_4:+20854340 | Msa0981350:CDS |
| TAGTTCTGAATTGAGATATT+GGG | 0.394413 | 6_4:-20854194 | None:intergenic |
| GAAACAAGATGGACTACAAT+TGG | 0.410631 | 6_4:-20854240 | None:intergenic |
| CATCTTCATTGAAGCATACA+TGG | 0.413157 | 6_4:-20855471 | None:intergenic |
| AAACTGAGATCTTCTGTTGT+AGG | 0.413576 | 6_4:-20854154 | None:intergenic |
| AGAGATGAACTTTCTTGAGT+TGG | 0.455289 | 6_4:+20855303 | Msa0981350:CDS |
| TATGGTGGCTGCTAAATTCA+TGG | 0.457479 | 6_4:+20854358 | Msa0981350:CDS |
| AATGCTTACTATGCAAAAGT+TGG | 0.459505 | 6_4:+20855265 | Msa0981350:CDS |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 6_4:-20854314 | None:intergenic |
| TCTTTCTTCTCTACTCAAAA+GGG | 0.500854 | 6_4:+20854100 | Msa0981350:CDS |
| GTAGGTGAACACAATAGGAT+TGG | 0.504027 | 6_4:-20855375 | None:intergenic |
| AAGGAGTTGATAGGCAAAGA+GGG | 0.504487 | 6_4:-20854305 | None:intergenic |
| GAGTAACCGATGAACATTGA+AGG | 0.512746 | 6_4:-20854324 | None:intergenic |
| GCTTACTATGCAAAAGTTGG+AGG | 0.516391 | 6_4:+20855268 | Msa0981350:CDS |
| GGATTCTCAAGCTCTGCCAT+TGG | 0.549754 | 6_4:-20854050 | None:intergenic |
| TATGCAACAATGAAACAAGA+TGG | 0.550455 | 6_4:-20854251 | None:intergenic |
| TCAACTCCTTCAATGTTCAT+CGG | 0.554519 | 6_4:+20854318 | Msa0981350:CDS |
| CATACTTGAAAATTCTCTCA+AGG | 0.557579 | 6_4:-20854217 | None:intergenic |
| TGCATGCAATCTAGTTGTAG+AGG | 0.593567 | 6_4:+20855553 | Msa0981350:three_prime_UTR |
| ACTCATTACAAGTGTTATGG+TGG | 0.606587 | 6_4:+20854343 | Msa0981350:CDS |
| GAAGGAGTTGATAGGCAAAG+AGG | 0.613982 | 6_4:-20854306 | None:intergenic |
| ATCTTCATTGAAGCATACAT+GGG | 0.615889 | 6_4:-20855470 | None:intergenic |
| TGCATGCATCAAGAAAATGA+AGG | 0.617939 | 6_4:-20855538 | None:intergenic |
| GCATGCAATCTAGTTGTAGA+GGG | 0.622551 | 6_4:+20855554 | Msa0981350:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAAAATTTTTGTTGTTA+AGG | + | chr6_4:20854755-20854774 | Msa0981350:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | - | chr6_4:20854784-20854803 | None:intergenic | 10.0% |
| !!! | ATATAAAATTTTTGTTGTTA+AGG | + | chr6_4:20854755-20854774 | Msa0981350:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | - | chr6_4:20854784-20854803 | None:intergenic | 10.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | + | chr6_4:20854605-20854624 | Msa0981350:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | - | chr6_4:20854686-20854705 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | + | chr6_4:20854684-20854703 | Msa0981350:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | + | chr6_4:20854827-20854846 | Msa0981350:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | + | chr6_4:20854828-20854847 | Msa0981350:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | + | chr6_4:20855142-20855161 | Msa0981350:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | - | chr6_4:20855591-20855610 | None:intergenic | 15.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | + | chr6_4:20854605-20854624 | Msa0981350:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | - | chr6_4:20854686-20854705 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | + | chr6_4:20854684-20854703 | Msa0981350:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | + | chr6_4:20854827-20854846 | Msa0981350:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | + | chr6_4:20854828-20854847 | Msa0981350:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | + | chr6_4:20855142-20855161 | Msa0981350:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | - | chr6_4:20855591-20855610 | None:intergenic | 15.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | + | chr6_4:20854034-20854053 | Msa0981350:exon | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | - | chr6_4:20854471-20854490 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | - | chr6_4:20854674-20854693 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | + | chr6_4:20854708-20854727 | Msa0981350:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | + | chr6_4:20854709-20854728 | Msa0981350:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | + | chr6_4:20854710-20854729 | Msa0981350:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | - | chr6_4:20854878-20854897 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | - | chr6_4:20854890-20854909 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | - | chr6_4:20854954-20854973 | None:intergenic | 20.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | + | chr6_4:20854034-20854053 | Msa0981350:exon | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | - | chr6_4:20854471-20854490 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | - | chr6_4:20854674-20854693 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | + | chr6_4:20854708-20854727 | Msa0981350:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | + | chr6_4:20854709-20854728 | Msa0981350:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | + | chr6_4:20854710-20854729 | Msa0981350:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | - | chr6_4:20854878-20854897 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | - | chr6_4:20854890-20854909 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | - | chr6_4:20854954-20854973 | None:intergenic | 20.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | - | chr6_4:20854197-20854216 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | + | chr6_4:20854711-20854730 | Msa0981350:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | - | chr6_4:20855238-20855257 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | - | chr6_4:20855351-20855370 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | - | chr6_4:20855424-20855443 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | + | chr6_4:20855427-20855446 | Msa0981350:CDS | 25.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | - | chr6_4:20854197-20854216 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | + | chr6_4:20854711-20854730 | Msa0981350:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | - | chr6_4:20855238-20855257 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | - | chr6_4:20855351-20855370 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | - | chr6_4:20855424-20855443 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | + | chr6_4:20855427-20855446 | Msa0981350:CDS | 25.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | - | chr6_4:20854020-20854039 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | - | chr6_4:20854086-20854105 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | + | chr6_4:20854099-20854118 | Msa0981350:CDS | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | + | chr6_4:20854100-20854119 | Msa0981350:CDS | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | - | chr6_4:20854198-20854217 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | - | chr6_4:20854220-20854239 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | - | chr6_4:20854254-20854273 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | + | chr6_4:20854340-20854359 | Msa0981350:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | + | chr6_4:20854428-20854447 | Msa0981350:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | + | chr6_4:20854429-20854448 | Msa0981350:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | - | chr6_4:20854519-20854538 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | - | chr6_4:20854637-20854656 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | + | chr6_4:20854980-20854999 | Msa0981350:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | - | chr6_4:20855068-20855087 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | - | chr6_4:20855239-20855258 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | + | chr6_4:20855265-20855284 | Msa0981350:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | - | chr6_4:20855396-20855415 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | - | chr6_4:20855473-20855492 | None:intergenic | 30.0% | |
| !!! | AATTTTGTACAAGAGTGCTT+GGG | - | chr6_4:20854019-20854038 | None:intergenic | 30.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | - | chr6_4:20854020-20854039 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | - | chr6_4:20854086-20854105 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | + | chr6_4:20854099-20854118 | Msa0981350:CDS | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | + | chr6_4:20854100-20854119 | Msa0981350:CDS | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | - | chr6_4:20854198-20854217 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | - | chr6_4:20854220-20854239 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | - | chr6_4:20854254-20854273 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | + | chr6_4:20854340-20854359 | Msa0981350:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | + | chr6_4:20854428-20854447 | Msa0981350:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | + | chr6_4:20854429-20854448 | Msa0981350:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | - | chr6_4:20854519-20854538 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | - | chr6_4:20854637-20854656 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | + | chr6_4:20854980-20854999 | Msa0981350:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | - | chr6_4:20855068-20855087 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | - | chr6_4:20855239-20855258 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | + | chr6_4:20855265-20855284 | Msa0981350:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | - | chr6_4:20855396-20855415 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | - | chr6_4:20855473-20855492 | None:intergenic | 30.0% | |
| ! | ATAAGCTTTGGCATCTCATT+AGG | - | chr6_4:20854074-20854093 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | - | chr6_4:20854157-20854176 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | + | chr6_4:20854161-20854180 | Msa0981350:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | - | chr6_4:20854243-20854262 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr6_4:20854317-20854336 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | + | chr6_4:20854318-20854337 | Msa0981350:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | + | chr6_4:20854343-20854362 | Msa0981350:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | + | chr6_4:20854522-20854541 | Msa0981350:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | - | chr6_4:20854654-20854673 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | - | chr6_4:20854857-20854876 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | - | chr6_4:20855235-20855254 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | + | chr6_4:20855233-20855252 | Msa0981350:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | - | chr6_4:20855302-20855321 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | + | chr6_4:20855303-20855322 | Msa0981350:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | + | chr6_4:20855322-20855341 | Msa0981350:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | + | chr6_4:20855323-20855342 | Msa0981350:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | - | chr6_4:20855333-20855352 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | - | chr6_4:20855367-20855386 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | - | chr6_4:20855383-20855402 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | + | chr6_4:20855433-20855452 | Msa0981350:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | - | chr6_4:20855446-20855465 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | - | chr6_4:20855464-20855483 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | - | chr6_4:20855465-20855484 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | - | chr6_4:20855474-20855493 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | - | chr6_4:20855541-20855560 | None:intergenic | 35.0% | |
| !!! | ATTTTGTACAAGAGTGCTTG+GGG | - | chr6_4:20854018-20854037 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGGCATCTCATT+AGG | - | chr6_4:20854074-20854093 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | - | chr6_4:20854157-20854176 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | + | chr6_4:20854161-20854180 | Msa0981350:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | - | chr6_4:20854243-20854262 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | chr6_4:20854317-20854336 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | + | chr6_4:20854318-20854337 | Msa0981350:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | + | chr6_4:20854343-20854362 | Msa0981350:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | + | chr6_4:20854522-20854541 | Msa0981350:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | - | chr6_4:20854654-20854673 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | - | chr6_4:20854857-20854876 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | - | chr6_4:20855235-20855254 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | + | chr6_4:20855233-20855252 | Msa0981350:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | - | chr6_4:20855302-20855321 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | + | chr6_4:20855303-20855322 | Msa0981350:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | + | chr6_4:20855322-20855341 | Msa0981350:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | + | chr6_4:20855323-20855342 | Msa0981350:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | - | chr6_4:20855333-20855352 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | - | chr6_4:20855367-20855386 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | - | chr6_4:20855383-20855402 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | + | chr6_4:20855433-20855452 | Msa0981350:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | - | chr6_4:20855446-20855465 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | - | chr6_4:20855464-20855483 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | - | chr6_4:20855465-20855484 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | - | chr6_4:20855474-20855493 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | - | chr6_4:20855541-20855560 | None:intergenic | 35.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | - | chr6_4:20854148-20854167 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | - | chr6_4:20854308-20854327 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | - | chr6_4:20854327-20854346 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | + | chr6_4:20854358-20854377 | Msa0981350:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | - | chr6_4:20854551-20854570 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr6_4:20854984-20855003 | Msa0981350:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | - | chr6_4:20855035-20855054 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | - | chr6_4:20855036-20855055 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | + | chr6_4:20855035-20855054 | Msa0981350:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | - | chr6_4:20855252-20855271 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | + | chr6_4:20855268-20855287 | Msa0981350:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | + | chr6_4:20855316-20855335 | Msa0981350:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | - | chr6_4:20855378-20855397 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | + | chr6_4:20855553-20855572 | Msa0981350:three_prime_UTR | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | + | chr6_4:20855554-20855573 | Msa0981350:three_prime_UTR | 40.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | - | chr6_4:20854148-20854167 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | - | chr6_4:20854308-20854327 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | - | chr6_4:20854327-20854346 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | + | chr6_4:20854358-20854377 | Msa0981350:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | - | chr6_4:20854551-20854570 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | chr6_4:20854984-20855003 | Msa0981350:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | - | chr6_4:20855035-20855054 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | - | chr6_4:20855036-20855055 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | + | chr6_4:20855035-20855054 | Msa0981350:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | - | chr6_4:20855252-20855271 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | + | chr6_4:20855268-20855287 | Msa0981350:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | + | chr6_4:20855316-20855335 | Msa0981350:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | - | chr6_4:20855378-20855397 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | + | chr6_4:20855553-20855572 | Msa0981350:three_prime_UTR | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | + | chr6_4:20855554-20855573 | Msa0981350:three_prime_UTR | 40.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | - | chr6_4:20854309-20854328 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | - | chr6_4:20855014-20855033 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | - | chr6_4:20855031-20855050 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | - | chr6_4:20855032-20855051 | None:intergenic | 45.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | - | chr6_4:20854309-20854328 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | - | chr6_4:20855014-20855033 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | - | chr6_4:20855031-20855050 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | - | chr6_4:20855032-20855051 | None:intergenic | 45.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | - | chr6_4:20854053-20854072 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | - | chr6_4:20855001-20855020 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | - | chr6_4:20855045-20855064 | None:intergenic | 50.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | - | chr6_4:20854053-20854072 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | - | chr6_4:20855001-20855020 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | - | chr6_4:20855045-20855064 | None:intergenic | 50.0% | |
| GGGCTACATCGCTGTGACAC+CGG | + | chr6_4:20854449-20854468 | Msa0981350:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | + | chr6_4:20854450-20854469 | Msa0981350:intron | 60.0% | |
| GGGCTACATCGCTGTGACAC+CGG | + | chr6_4:20854449-20854468 | Msa0981350:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | + | chr6_4:20854450-20854469 | Msa0981350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 20854017 | 20855631 | 20854017 | ID=Msa0981350;Name=Msa0981350 |
| chr6_4 | mRNA | 20854017 | 20855631 | 20854017 | ID=Msa0981350-mRNA-1;Parent=Msa0981350;Name=Msa0981350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36|1|1|1|1|1|2|100|203 |
| chr6_4 | exon | 20854017 | 20854387 | 20854017 | ID=Msa0981350-mRNA-1:exon:6372;Parent=Msa0981350-mRNA-1 |
| chr6_4 | exon | 20855255 | 20855631 | 20855255 | ID=Msa0981350-mRNA-1:exon:6373;Parent=Msa0981350-mRNA-1 |
| chr6_4 | five_prime_UTR | 20854017 | 20854052 | 20854017 | ID=Msa0981350-mRNA-1:five_prime_utr;Parent=Msa0981350-mRNA-1 |
| chr6_4 | CDS | 20854053 | 20854387 | 20854053 | ID=Msa0981350-mRNA-1:cds;Parent=Msa0981350-mRNA-1 |
| chr6_4 | CDS | 20855255 | 20855531 | 20855255 | ID=Msa0981350-mRNA-1:cds;Parent=Msa0981350-mRNA-1 |
| chr6_4 | three_prime_UTR | 20855532 | 20855631 | 20855532 | ID=Msa0981350-mRNA-1:three_prime_utr;Parent=Msa0981350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
