Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433100 | XP_003624270.1 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.39e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433100 | sp|O80513|CCU41_ARATH | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.54e-102 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433100 | G7KTC0 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 2.10e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623380 | Msa1433100 | 0.825064 | 5.746178e-54 | -8.615850e-47 |
| Msa1263630 | Msa1433100 | 0.827184 | 1.799477e-54 | -8.615850e-47 |
| Msa0981350 | Msa1433100 | 0.956885 | 1.022981e-114 | -8.615850e-47 |
| Msa1068540 | Msa1433100 | 0.987827 | 1.105499e-171 | -8.615850e-47 |
| Msa0522520 | Msa1433100 | 0.805320 | 1.413038e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433100 | MtrunA17_Chr7g0250121 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.04e-151 | 417 |
| Msa1433100 | MtrunA17_Chr8g0335971 | 80.296 | 203 | 37 | 2 | 1 | 203 | 1 | 200 | 2.12e-115 | 327 |
| Msa1433100 | MtrunA17_Chr7g0259831 | 47.561 | 164 | 83 | 2 | 1 | 162 | 21 | 183 | 9.83e-53 | 168 |
| Msa1433100 | MtrunA17_Chr7g0231431 | 42.051 | 195 | 95 | 5 | 11 | 198 | 29 | 212 | 7.76e-48 | 156 |
| Msa1433100 | MtrunA17_Chr2g0322921 | 47.647 | 170 | 75 | 2 | 10 | 165 | 25 | 194 | 1.35e-46 | 153 |
| Msa1433100 | MtrunA17_Chr4g0012811 | 47.170 | 159 | 78 | 2 | 11 | 163 | 29 | 187 | 1.90e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433100 | AT2G44740.1 | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.66e-103 | 295 |
| Msa1433100 | AT5G61650.1 | 57.500 | 200 | 76 | 4 | 10 | 203 | 22 | 218 | 5.86e-73 | 220 |
| Msa1433100 | AT5G07450.1 | 62.874 | 167 | 55 | 2 | 1 | 165 | 16 | 177 | 1.14e-71 | 217 |
| Msa1433100 | AT2G45080.1 | 45.963 | 161 | 85 | 1 | 5 | 163 | 22 | 182 | 2.89e-47 | 155 |
| Msa1433100 | AT3G60550.1 | 44.848 | 165 | 85 | 2 | 5 | 163 | 24 | 188 | 5.20e-47 | 154 |
| Msa1433100 | AT3G63120.2 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa1433100 | AT3G63120.1 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa1433100 | AT3G21870.1 | 43.038 | 158 | 87 | 1 | 11 | 165 | 25 | 182 | 3.24e-44 | 147 |
| Msa1433100 | AT3G05327.1 | 44.099 | 161 | 83 | 2 | 11 | 164 | 31 | 191 | 5.37e-43 | 144 |
Find 43 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTGTTGTAGGAGTTTC+TGG | 0.074330 | tig0027235:-3522 | None:intergenic |
| TGAAGCATACATGGGTATTT+AGG | 0.186319 | tig0027235:-4839 | None:intergenic |
| CTTGAGTTGGACTTCCTATT+TGG | 0.193159 | tig0027235:+4693 | Msa1433100:CDS |
| TTGGACTTCCTATTTGGTTT+AGG | 0.206229 | tig0027235:+4699 | Msa1433100:CDS |
| TTAATTAACAAGTCATTAAT+TGG | 0.209078 | tig0027235:-4965 | None:intergenic |
| TGGACTTCCTATTTGGTTTA+GGG | 0.221178 | tig0027235:+4700 | Msa1433100:CDS |
| TGTTTGGAGTTACATTTAAA+TGG | 0.251111 | tig0027235:-4725 | None:intergenic |
| ACAGATTCTTCCTTAGGTTT+AGG | 0.280697 | tig0027235:+4810 | Msa1433100:CDS |
| GAAGCATACATGGGTATTTA+GGG | 0.294136 | tig0027235:-4838 | None:intergenic |
| ATAAGCTTTGGCATCTCATT+AGG | 0.304503 | tig0027235:-3448 | None:intergenic |
| GAAGAATCTGTAAAATTTAG+AGG | 0.323675 | tig0027235:-4798 | None:intergenic |
| GTAGTTCTGAATTGAGATAT+TGG | 0.346156 | tig0027235:-3572 | None:intergenic |
| TCATCATCATTTCACTTTGT+AGG | 0.347005 | tig0027235:-4770 | None:intergenic |
| TTCTTTCTTCTCTACTCAAA+AGG | 0.358241 | tig0027235:+3476 | Msa1433100:CDS |
| CAATAGGATTGGAAAGTGTT+TGG | 0.370597 | tig0027235:-4741 | None:intergenic |
| CTCAAGAAAGTTCATCTCTA+TGG | 0.376952 | tig0027235:-4676 | None:intergenic |
| ACTTTGTAGGTGAACACAAT+AGG | 0.377696 | tig0027235:-4757 | None:intergenic |
| AATGGAACCCTAAACCAAAT+AGG | 0.383885 | tig0027235:-4707 | None:intergenic |
| GAAAGAAAAGCTATAAGCTT+TGG | 0.385414 | tig0027235:-3460 | None:intergenic |
| GTTACTCATTACAAGTGTTA+TGG | 0.390377 | tig0027235:+3717 | Msa1433100:CDS |
| TAGTTCTGAATTGAGATATT+GGG | 0.394413 | tig0027235:-3571 | None:intergenic |
| GAAACAAGATGGACTACAAT+TGG | 0.410631 | tig0027235:-3617 | None:intergenic |
| CATCTTCATTGAAGCATACA+TGG | 0.413157 | tig0027235:-4848 | None:intergenic |
| AAACTGAGATCTTCTGTTGT+AGG | 0.413576 | tig0027235:-3531 | None:intergenic |
| AGAGATGAACTTTCTTGAGT+TGG | 0.455289 | tig0027235:+4680 | Msa1433100:CDS |
| TATGGTGGCTGCTAAATTCA+TGG | 0.457479 | tig0027235:+3735 | Msa1433100:CDS |
| AATGCTTACTATGCAAAAGT+TGG | 0.459505 | tig0027235:+4642 | Msa1433100:CDS |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | tig0027235:-3691 | None:intergenic |
| TCTTTCTTCTCTACTCAAAA+GGG | 0.500854 | tig0027235:+3477 | Msa1433100:CDS |
| GTAGGTGAACACAATAGGAT+TGG | 0.504027 | tig0027235:-4752 | None:intergenic |
| AAGGAGTTGATAGGCAAAGA+GGG | 0.504487 | tig0027235:-3682 | None:intergenic |
| GAGTAACCGATGAACATTGA+AGG | 0.512746 | tig0027235:-3701 | None:intergenic |
| GCTTACTATGCAAAAGTTGG+AGG | 0.516391 | tig0027235:+4645 | Msa1433100:CDS |
| GGATTCTCAAGCTCTGCCAT+TGG | 0.549754 | tig0027235:-3427 | None:intergenic |
| TATGCAACAATGAAACAAGA+TGG | 0.550455 | tig0027235:-3628 | None:intergenic |
| TCAACTCCTTCAATGTTCAT+CGG | 0.554519 | tig0027235:+3695 | Msa1433100:CDS |
| CATACTTGAAAATTCTCTCA+AGG | 0.557579 | tig0027235:-3594 | None:intergenic |
| TGCATGCAATCTAGTTGTAG+AGG | 0.593567 | tig0027235:+4930 | Msa1433100:three_prime_UTR |
| ACTCATTACAAGTGTTATGG+TGG | 0.606587 | tig0027235:+3720 | Msa1433100:CDS |
| GAAGGAGTTGATAGGCAAAG+AGG | 0.613982 | tig0027235:-3683 | None:intergenic |
| ATCTTCATTGAAGCATACAT+GGG | 0.615889 | tig0027235:-4847 | None:intergenic |
| TGCATGCATCAAGAAAATGA+AGG | 0.617939 | tig0027235:-4915 | None:intergenic |
| GCATGCAATCTAGTTGTAGA+GGG | 0.622551 | tig0027235:+4931 | Msa1433100:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAAAATTTTTGTTGTTA+AGG | + | tig0027235:4132-4151 | Msa1433100:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | - | tig0027235:4161-4180 | None:intergenic | 10.0% |
| !!! | ATATAAAATTTTTGTTGTTA+AGG | + | tig0027235:4132-4151 | Msa1433100:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | - | tig0027235:4161-4180 | None:intergenic | 10.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | + | tig0027235:3982-4001 | Msa1433100:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | - | tig0027235:4063-4082 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | + | tig0027235:4061-4080 | Msa1433100:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | + | tig0027235:4204-4223 | Msa1433100:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | + | tig0027235:4205-4224 | Msa1433100:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | + | tig0027235:4519-4538 | Msa1433100:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | - | tig0027235:4968-4987 | None:intergenic | 15.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | + | tig0027235:3982-4001 | Msa1433100:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | - | tig0027235:4063-4082 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | + | tig0027235:4061-4080 | Msa1433100:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | + | tig0027235:4204-4223 | Msa1433100:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | + | tig0027235:4205-4224 | Msa1433100:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | + | tig0027235:4519-4538 | Msa1433100:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | - | tig0027235:4968-4987 | None:intergenic | 15.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | + | tig0027235:3411-3430 | Msa1433100:exon | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | - | tig0027235:3848-3867 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | - | tig0027235:4051-4070 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | + | tig0027235:4085-4104 | Msa1433100:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | + | tig0027235:4086-4105 | Msa1433100:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | + | tig0027235:4087-4106 | Msa1433100:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | - | tig0027235:4255-4274 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | - | tig0027235:4267-4286 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | - | tig0027235:4331-4350 | None:intergenic | 20.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | + | tig0027235:3411-3430 | Msa1433100:exon | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | - | tig0027235:3848-3867 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | - | tig0027235:4051-4070 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | + | tig0027235:4085-4104 | Msa1433100:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | + | tig0027235:4086-4105 | Msa1433100:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | + | tig0027235:4087-4106 | Msa1433100:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | - | tig0027235:4255-4274 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | - | tig0027235:4267-4286 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | - | tig0027235:4331-4350 | None:intergenic | 20.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | - | tig0027235:3574-3593 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | + | tig0027235:4088-4107 | Msa1433100:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | - | tig0027235:4615-4634 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | - | tig0027235:4728-4747 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | - | tig0027235:4801-4820 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | + | tig0027235:4804-4823 | Msa1433100:CDS | 25.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | - | tig0027235:3574-3593 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | + | tig0027235:4088-4107 | Msa1433100:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | - | tig0027235:4615-4634 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | - | tig0027235:4728-4747 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | - | tig0027235:4801-4820 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | + | tig0027235:4804-4823 | Msa1433100:CDS | 25.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | - | tig0027235:3397-3416 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | - | tig0027235:3463-3482 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | + | tig0027235:3476-3495 | Msa1433100:CDS | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | + | tig0027235:3477-3496 | Msa1433100:CDS | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | - | tig0027235:3575-3594 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | - | tig0027235:3597-3616 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | - | tig0027235:3631-3650 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | + | tig0027235:3717-3736 | Msa1433100:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | + | tig0027235:3805-3824 | Msa1433100:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | + | tig0027235:3806-3825 | Msa1433100:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | - | tig0027235:3896-3915 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | - | tig0027235:4014-4033 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | + | tig0027235:4357-4376 | Msa1433100:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | - | tig0027235:4445-4464 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | - | tig0027235:4616-4635 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | + | tig0027235:4642-4661 | Msa1433100:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | - | tig0027235:4773-4792 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | - | tig0027235:4850-4869 | None:intergenic | 30.0% | |
| !!! | AATTTTGTACAAGAGTGCTT+GGG | - | tig0027235:3396-3415 | None:intergenic | 30.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | - | tig0027235:3397-3416 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | - | tig0027235:3463-3482 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | + | tig0027235:3476-3495 | Msa1433100:CDS | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | + | tig0027235:3477-3496 | Msa1433100:CDS | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | - | tig0027235:3575-3594 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | - | tig0027235:3597-3616 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | - | tig0027235:3631-3650 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | + | tig0027235:3717-3736 | Msa1433100:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | + | tig0027235:3805-3824 | Msa1433100:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | + | tig0027235:3806-3825 | Msa1433100:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | - | tig0027235:3896-3915 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | - | tig0027235:4014-4033 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | + | tig0027235:4357-4376 | Msa1433100:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | - | tig0027235:4445-4464 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | - | tig0027235:4616-4635 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | + | tig0027235:4642-4661 | Msa1433100:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | - | tig0027235:4773-4792 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | - | tig0027235:4850-4869 | None:intergenic | 30.0% | |
| ! | ATAAGCTTTGGCATCTCATT+AGG | - | tig0027235:3451-3470 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | - | tig0027235:3534-3553 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | + | tig0027235:3538-3557 | Msa1433100:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | - | tig0027235:3620-3639 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | tig0027235:3694-3713 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | + | tig0027235:3695-3714 | Msa1433100:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | + | tig0027235:3720-3739 | Msa1433100:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | + | tig0027235:3899-3918 | Msa1433100:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | - | tig0027235:4031-4050 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | - | tig0027235:4234-4253 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | - | tig0027235:4612-4631 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | + | tig0027235:4610-4629 | Msa1433100:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | - | tig0027235:4679-4698 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | + | tig0027235:4680-4699 | Msa1433100:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | + | tig0027235:4699-4718 | Msa1433100:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | + | tig0027235:4700-4719 | Msa1433100:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | - | tig0027235:4710-4729 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | - | tig0027235:4744-4763 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | - | tig0027235:4760-4779 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | + | tig0027235:4810-4829 | Msa1433100:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | - | tig0027235:4823-4842 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | - | tig0027235:4841-4860 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | - | tig0027235:4842-4861 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | - | tig0027235:4851-4870 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | - | tig0027235:4918-4937 | None:intergenic | 35.0% | |
| !!! | ATTTTGTACAAGAGTGCTTG+GGG | - | tig0027235:3395-3414 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGGCATCTCATT+AGG | - | tig0027235:3451-3470 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | - | tig0027235:3534-3553 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | + | tig0027235:3538-3557 | Msa1433100:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | - | tig0027235:3620-3639 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | - | tig0027235:3694-3713 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | + | tig0027235:3695-3714 | Msa1433100:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | + | tig0027235:3720-3739 | Msa1433100:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | + | tig0027235:3899-3918 | Msa1433100:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | - | tig0027235:4031-4050 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | - | tig0027235:4234-4253 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | - | tig0027235:4612-4631 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | + | tig0027235:4610-4629 | Msa1433100:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | - | tig0027235:4679-4698 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | + | tig0027235:4680-4699 | Msa1433100:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | + | tig0027235:4699-4718 | Msa1433100:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | + | tig0027235:4700-4719 | Msa1433100:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | - | tig0027235:4710-4729 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | - | tig0027235:4744-4763 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | - | tig0027235:4760-4779 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | + | tig0027235:4810-4829 | Msa1433100:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | - | tig0027235:4823-4842 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | - | tig0027235:4841-4860 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | - | tig0027235:4842-4861 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | - | tig0027235:4851-4870 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | - | tig0027235:4918-4937 | None:intergenic | 35.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | - | tig0027235:3525-3544 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | - | tig0027235:3685-3704 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | - | tig0027235:3704-3723 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | + | tig0027235:3735-3754 | Msa1433100:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | - | tig0027235:3928-3947 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | tig0027235:4361-4380 | Msa1433100:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | - | tig0027235:4412-4431 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | - | tig0027235:4413-4432 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | + | tig0027235:4412-4431 | Msa1433100:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | - | tig0027235:4629-4648 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | + | tig0027235:4645-4664 | Msa1433100:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | + | tig0027235:4693-4712 | Msa1433100:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | - | tig0027235:4755-4774 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | + | tig0027235:4930-4949 | Msa1433100:three_prime_UTR | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | + | tig0027235:4931-4950 | Msa1433100:three_prime_UTR | 40.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | - | tig0027235:3525-3544 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | - | tig0027235:3685-3704 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | - | tig0027235:3704-3723 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | + | tig0027235:3735-3754 | Msa1433100:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | - | tig0027235:3928-3947 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | + | tig0027235:4361-4380 | Msa1433100:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | - | tig0027235:4412-4431 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | - | tig0027235:4413-4432 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | + | tig0027235:4412-4431 | Msa1433100:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | - | tig0027235:4629-4648 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | + | tig0027235:4645-4664 | Msa1433100:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | + | tig0027235:4693-4712 | Msa1433100:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | - | tig0027235:4755-4774 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | + | tig0027235:4930-4949 | Msa1433100:three_prime_UTR | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | + | tig0027235:4931-4950 | Msa1433100:three_prime_UTR | 40.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | - | tig0027235:3686-3705 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | - | tig0027235:4391-4410 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | - | tig0027235:4408-4427 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | - | tig0027235:4409-4428 | None:intergenic | 45.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | - | tig0027235:3686-3705 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | - | tig0027235:4391-4410 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | - | tig0027235:4408-4427 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | - | tig0027235:4409-4428 | None:intergenic | 45.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | - | tig0027235:3430-3449 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | - | tig0027235:4378-4397 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | - | tig0027235:4422-4441 | None:intergenic | 50.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | - | tig0027235:3430-3449 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | - | tig0027235:4378-4397 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | - | tig0027235:4422-4441 | None:intergenic | 50.0% | |
| GGGCTACATCGCTGTGACAC+CGG | + | tig0027235:3826-3845 | Msa1433100:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | + | tig0027235:3827-3846 | Msa1433100:intron | 60.0% | |
| GGGCTACATCGCTGTGACAC+CGG | + | tig0027235:3826-3845 | Msa1433100:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | + | tig0027235:3827-3846 | Msa1433100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027235 | gene | 3394 | 5008 | 3394 | ID=Msa1433100;Name=Msa1433100 |
| tig0027235 | mRNA | 3394 | 5008 | 3394 | ID=Msa1433100-mRNA-1;Parent=Msa1433100;Name=Msa1433100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36|1|1|1|1|1|2|100|203 |
| tig0027235 | exon | 3394 | 3764 | 3394 | ID=Msa1433100-mRNA-1:exon:8474;Parent=Msa1433100-mRNA-1 |
| tig0027235 | exon | 4632 | 5008 | 4632 | ID=Msa1433100-mRNA-1:exon:8475;Parent=Msa1433100-mRNA-1 |
| tig0027235 | five_prime_UTR | 3394 | 3429 | 3394 | ID=Msa1433100-mRNA-1:five_prime_utr;Parent=Msa1433100-mRNA-1 |
| tig0027235 | CDS | 3430 | 3764 | 3430 | ID=Msa1433100-mRNA-1:cds;Parent=Msa1433100-mRNA-1 |
| tig0027235 | CDS | 4632 | 4908 | 4632 | ID=Msa1433100-mRNA-1:cds;Parent=Msa1433100-mRNA-1 |
| tig0027235 | three_prime_UTR | 4909 | 5008 | 4909 | ID=Msa1433100-mRNA-1:three_prime_utr;Parent=Msa1433100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
