Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068540 | XP_003624270.1 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.39e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068540 | sp|O80513|CCU41_ARATH | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.54e-102 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068540 | G7KTC0 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 2.10e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623380 | Msa1068540 | 0.817107 | 3.914806e-52 | -8.615850e-47 |
| Msa0981350 | Msa1068540 | 0.959133 | 4.155715e-117 | -8.615850e-47 |
| Msa1068540 | Msa1263630 | 0.821356 | 4.216843e-53 | -8.615850e-47 |
| Msa1068540 | Msa1433100 | 0.987827 | 1.105499e-171 | -8.615850e-47 |
| Msa0522520 | Msa1068540 | 0.807432 | 5.070430e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068540 | MtrunA17_Chr7g0250121 | 98.522 | 203 | 3 | 0 | 1 | 203 | 1 | 203 | 4.04e-151 | 417 |
| Msa1068540 | MtrunA17_Chr8g0335971 | 80.296 | 203 | 37 | 2 | 1 | 203 | 1 | 200 | 2.12e-115 | 327 |
| Msa1068540 | MtrunA17_Chr7g0259831 | 47.561 | 164 | 83 | 2 | 1 | 162 | 21 | 183 | 9.83e-53 | 168 |
| Msa1068540 | MtrunA17_Chr7g0231431 | 42.051 | 195 | 95 | 5 | 11 | 198 | 29 | 212 | 7.76e-48 | 156 |
| Msa1068540 | MtrunA17_Chr2g0322921 | 47.647 | 170 | 75 | 2 | 10 | 165 | 25 | 194 | 1.35e-46 | 153 |
| Msa1068540 | MtrunA17_Chr4g0012811 | 47.170 | 159 | 78 | 2 | 11 | 163 | 29 | 187 | 1.90e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068540 | AT2G44740.1 | 72.589 | 197 | 47 | 2 | 1 | 195 | 1 | 192 | 7.66e-103 | 295 |
| Msa1068540 | AT5G61650.1 | 57.500 | 200 | 76 | 4 | 10 | 203 | 22 | 218 | 5.86e-73 | 220 |
| Msa1068540 | AT5G07450.1 | 62.874 | 167 | 55 | 2 | 1 | 165 | 16 | 177 | 1.14e-71 | 217 |
| Msa1068540 | AT2G45080.1 | 45.963 | 161 | 85 | 1 | 5 | 163 | 22 | 182 | 2.89e-47 | 155 |
| Msa1068540 | AT3G60550.1 | 44.848 | 165 | 85 | 2 | 5 | 163 | 24 | 188 | 5.20e-47 | 154 |
| Msa1068540 | AT3G63120.2 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa1068540 | AT3G63120.1 | 53.226 | 124 | 57 | 1 | 39 | 162 | 62 | 184 | 6.51e-46 | 151 |
| Msa1068540 | AT3G21870.1 | 43.038 | 158 | 87 | 1 | 11 | 165 | 25 | 182 | 3.24e-44 | 147 |
| Msa1068540 | AT3G05327.1 | 44.099 | 161 | 83 | 2 | 11 | 164 | 31 | 191 | 5.37e-43 | 144 |
Find 43 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTGTTGTAGGAGTTTC+TGG | 0.074330 | 7_2:+63556005 | None:intergenic |
| TGAAGCATACATGGGTATTT+AGG | 0.186319 | 7_2:+63554688 | None:intergenic |
| CTTGAGTTGGACTTCCTATT+TGG | 0.193159 | 7_2:-63554834 | Msa1068540:CDS |
| TTGGACTTCCTATTTGGTTT+AGG | 0.206229 | 7_2:-63554828 | Msa1068540:CDS |
| TTAATTAACAAGTCATTAAT+TGG | 0.209078 | 7_2:+63554562 | None:intergenic |
| TGGACTTCCTATTTGGTTTA+GGG | 0.221178 | 7_2:-63554827 | Msa1068540:CDS |
| TGTTTGGAGTTACATTTAAA+TGG | 0.251111 | 7_2:+63554802 | None:intergenic |
| ACAGATTCTTCCTTAGGTTT+AGG | 0.280697 | 7_2:-63554717 | Msa1068540:CDS |
| GAAGCATACATGGGTATTTA+GGG | 0.294136 | 7_2:+63554689 | None:intergenic |
| ATAAGCTTTGGCATCTCATT+AGG | 0.304503 | 7_2:+63556079 | None:intergenic |
| GAAGAATCTGTAAAATTTAG+AGG | 0.323675 | 7_2:+63554729 | None:intergenic |
| GTAGTTCTGAATTGAGATAT+TGG | 0.346156 | 7_2:+63555955 | None:intergenic |
| TCATCATCATTTCACTTTGT+AGG | 0.347005 | 7_2:+63554757 | None:intergenic |
| TTCTTTCTTCTCTACTCAAA+AGG | 0.358241 | 7_2:-63556051 | Msa1068540:CDS |
| CAATAGGATTGGAAAGTGTT+TGG | 0.370597 | 7_2:+63554786 | None:intergenic |
| CTCAAGAAAGTTCATCTCTA+TGG | 0.376952 | 7_2:+63554851 | None:intergenic |
| ACTTTGTAGGTGAACACAAT+AGG | 0.377696 | 7_2:+63554770 | None:intergenic |
| AATGGAACCCTAAACCAAAT+AGG | 0.383885 | 7_2:+63554820 | None:intergenic |
| GAAAGAAAAGCTATAAGCTT+TGG | 0.385414 | 7_2:+63556067 | None:intergenic |
| GTTACTCATTACAAGTGTTA+TGG | 0.390377 | 7_2:-63555810 | Msa1068540:CDS |
| TAGTTCTGAATTGAGATATT+GGG | 0.394413 | 7_2:+63555956 | None:intergenic |
| GAAACAAGATGGACTACAAT+TGG | 0.410631 | 7_2:+63555910 | None:intergenic |
| CATCTTCATTGAAGCATACA+TGG | 0.413157 | 7_2:+63554679 | None:intergenic |
| AAACTGAGATCTTCTGTTGT+AGG | 0.413576 | 7_2:+63555996 | None:intergenic |
| AGAGATGAACTTTCTTGAGT+TGG | 0.455289 | 7_2:-63554847 | Msa1068540:CDS |
| TATGGTGGCTGCTAAATTCA+TGG | 0.457479 | 7_2:-63555792 | Msa1068540:CDS |
| AATGCTTACTATGCAAAAGT+TGG | 0.459505 | 7_2:-63554885 | Msa1068540:CDS |
| TGAACATTGAAGGAGTTGAT+AGG | 0.499691 | 7_2:+63555836 | None:intergenic |
| TCTTTCTTCTCTACTCAAAA+GGG | 0.500854 | 7_2:-63556050 | Msa1068540:CDS |
| GTAGGTGAACACAATAGGAT+TGG | 0.504027 | 7_2:+63554775 | None:intergenic |
| AAGGAGTTGATAGGCAAAGA+GGG | 0.504487 | 7_2:+63555845 | None:intergenic |
| GAGTAACCGATGAACATTGA+AGG | 0.512746 | 7_2:+63555826 | None:intergenic |
| GCTTACTATGCAAAAGTTGG+AGG | 0.516391 | 7_2:-63554882 | Msa1068540:CDS |
| GGATTCTCAAGCTCTGCCAT+TGG | 0.549754 | 7_2:+63556100 | None:intergenic |
| TATGCAACAATGAAACAAGA+TGG | 0.550455 | 7_2:+63555899 | None:intergenic |
| TCAACTCCTTCAATGTTCAT+CGG | 0.554519 | 7_2:-63555832 | Msa1068540:CDS |
| CATACTTGAAAATTCTCTCA+AGG | 0.557579 | 7_2:+63555933 | None:intergenic |
| TGCATGCAATCTAGTTGTAG+AGG | 0.593567 | 7_2:-63554597 | Msa1068540:three_prime_UTR |
| ACTCATTACAAGTGTTATGG+TGG | 0.606587 | 7_2:-63555807 | Msa1068540:CDS |
| GAAGGAGTTGATAGGCAAAG+AGG | 0.613982 | 7_2:+63555844 | None:intergenic |
| ATCTTCATTGAAGCATACAT+GGG | 0.615889 | 7_2:+63554680 | None:intergenic |
| TGCATGCATCAAGAAAATGA+AGG | 0.617939 | 7_2:+63554612 | None:intergenic |
| GCATGCAATCTAGTTGTAGA+GGG | 0.622551 | 7_2:-63554596 | Msa1068540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAAAATTTTTGTTGTTA+AGG | - | chr7_2:63555279-63555298 | Msa1068540:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | + | chr7_2:63555308-63555327 | None:intergenic | 10.0% |
| !!! | ATATAAAATTTTTGTTGTTA+AGG | - | chr7_2:63555279-63555298 | Msa1068540:intron | 10.0% |
| !!! | TTTTTTTCTTTTATTTGATT+AGG | + | chr7_2:63555308-63555327 | None:intergenic | 10.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | - | chr7_2:63555129-63555148 | Msa1068540:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | + | chr7_2:63555210-63555229 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | - | chr7_2:63555208-63555227 | Msa1068540:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | - | chr7_2:63555351-63555370 | Msa1068540:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | - | chr7_2:63555352-63555371 | Msa1068540:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | - | chr7_2:63555666-63555685 | Msa1068540:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | + | chr7_2:63556115-63556134 | None:intergenic | 15.0% |
| !! | TTTATAGTAAACATATTGTT+TGG | - | chr7_2:63555129-63555148 | Msa1068540:intron | 15.0% |
| !! | CAAATCAATTAACTTATTAA+AGG | + | chr7_2:63555210-63555229 | None:intergenic | 15.0% |
| !! | CTTTAATAAGTTAATTGATT+TGG | - | chr7_2:63555208-63555227 | Msa1068540:intron | 15.0% |
| !!! | ATTTTTTTTCATAAAATCTC+TGG | - | chr7_2:63555351-63555370 | Msa1068540:intron | 15.0% |
| !!! | TTTTTTTTCATAAAATCTCT+GGG | - | chr7_2:63555352-63555371 | Msa1068540:intron | 15.0% |
| !! | ATTTAATTCATACATATTGT+CGG | - | chr7_2:63555666-63555685 | Msa1068540:intron | 15.0% |
| !! | TTAATTAACAAGTCATTAAT+TGG | + | chr7_2:63556115-63556134 | None:intergenic | 15.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | - | chr7_2:63554558-63554577 | Msa1068540:three_prime_UTR | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | + | chr7_2:63554995-63555014 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | + | chr7_2:63555198-63555217 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | - | chr7_2:63555232-63555251 | Msa1068540:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | - | chr7_2:63555233-63555252 | Msa1068540:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | - | chr7_2:63555234-63555253 | Msa1068540:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | + | chr7_2:63555402-63555421 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | + | chr7_2:63555414-63555433 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | + | chr7_2:63555478-63555497 | None:intergenic | 20.0% |
| !!! | AAATTTTTGCTTATTACCAA+TGG | - | chr7_2:63554558-63554577 | Msa1068540:three_prime_UTR | 20.0% |
| !!! | TTTCTTTCTAAAATTATTCC+CGG | + | chr7_2:63554995-63555014 | None:intergenic | 20.0% |
| !! | CTTATTAAAGGAATATTTCA+CGG | + | chr7_2:63555198-63555217 | None:intergenic | 20.0% |
| !! | AGAGCATATTTAAGAAAAAT+TGG | - | chr7_2:63555232-63555251 | Msa1068540:intron | 20.0% |
| !! | GAGCATATTTAAGAAAAATT+GGG | - | chr7_2:63555233-63555252 | Msa1068540:intron | 20.0% |
| !! | AGCATATTTAAGAAAAATTG+GGG | - | chr7_2:63555234-63555253 | Msa1068540:intron | 20.0% |
| !!! | TAAAATCAAGGAATTTTACA+AGG | + | chr7_2:63555402-63555421 | None:intergenic | 20.0% |
| !! | AAACTAGAAAGTTAAAATCA+AGG | + | chr7_2:63555414-63555433 | None:intergenic | 20.0% |
| !!! | CTATATTCTTTTAACATGTA+TGG | + | chr7_2:63555478-63555497 | None:intergenic | 20.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | + | chr7_2:63554721-63554740 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | - | chr7_2:63555235-63555254 | Msa1068540:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | + | chr7_2:63555762-63555781 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | + | chr7_2:63555875-63555894 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | + | chr7_2:63555948-63555967 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | - | chr7_2:63555951-63555970 | Msa1068540:CDS | 25.0% |
| !!! | TAGTTCTGAATTGAGATATT+GGG | + | chr7_2:63554721-63554740 | None:intergenic | 25.0% |
| ! | GCATATTTAAGAAAAATTGG+GGG | - | chr7_2:63555235-63555254 | Msa1068540:intron | 25.0% |
| ! | TACCTGAGGATTTAAAAAAA+GGG | + | chr7_2:63555762-63555781 | None:intergenic | 25.0% |
| !! | TGTTTGGAGTTACATTTAAA+TGG | + | chr7_2:63555875-63555894 | None:intergenic | 25.0% |
| ! | GAAGAATCTGTAAAATTTAG+AGG | + | chr7_2:63555948-63555967 | None:intergenic | 25.0% |
| !! | AATTTTACAGATTCTTCCTT+AGG | - | chr7_2:63555951-63555970 | Msa1068540:CDS | 25.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | + | chr7_2:63554544-63554563 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | + | chr7_2:63554610-63554629 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | - | chr7_2:63554623-63554642 | Msa1068540:exon | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | - | chr7_2:63554624-63554643 | Msa1068540:exon | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | + | chr7_2:63554722-63554741 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | + | chr7_2:63554744-63554763 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | + | chr7_2:63554778-63554797 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | - | chr7_2:63554864-63554883 | Msa1068540:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | - | chr7_2:63554952-63554971 | Msa1068540:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | - | chr7_2:63554953-63554972 | Msa1068540:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | + | chr7_2:63555043-63555062 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | + | chr7_2:63555161-63555180 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | - | chr7_2:63555504-63555523 | Msa1068540:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | + | chr7_2:63555592-63555611 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | + | chr7_2:63555763-63555782 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | - | chr7_2:63555789-63555808 | Msa1068540:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | + | chr7_2:63555920-63555939 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | + | chr7_2:63555997-63556016 | None:intergenic | 30.0% | |
| !!! | AATTTTGTACAAGAGTGCTT+GGG | + | chr7_2:63554543-63554562 | None:intergenic | 30.0% |
| !!! | AAATTTTGTACAAGAGTGCT+TGG | + | chr7_2:63554544-63554563 | None:intergenic | 30.0% |
| GAAAGAAAAGCTATAAGCTT+TGG | + | chr7_2:63554610-63554629 | None:intergenic | 30.0% | |
| TTCTTTCTTCTCTACTCAAA+AGG | - | chr7_2:63554623-63554642 | Msa1068540:exon | 30.0% | |
| TCTTTCTTCTCTACTCAAAA+GGG | - | chr7_2:63554624-63554643 | Msa1068540:exon | 30.0% | |
| !! | GTAGTTCTGAATTGAGATAT+TGG | + | chr7_2:63554722-63554741 | None:intergenic | 30.0% |
| CATACTTGAAAATTCTCTCA+AGG | + | chr7_2:63554744-63554763 | None:intergenic | 30.0% | |
| TATGCAACAATGAAACAAGA+TGG | + | chr7_2:63554778-63554797 | None:intergenic | 30.0% | |
| GTTACTCATTACAAGTGTTA+TGG | - | chr7_2:63554864-63554883 | Msa1068540:CDS | 30.0% | |
| CACTAACACAAACATATACA+CGG | - | chr7_2:63554952-63554971 | Msa1068540:intron | 30.0% | |
| ACTAACACAAACATATACAC+GGG | - | chr7_2:63554953-63554972 | Msa1068540:intron | 30.0% | |
| CTGATACAACATCACAAAAA+TGG | + | chr7_2:63555043-63555062 | None:intergenic | 30.0% | |
| TCAAGGACTAAACAAAACAA+AGG | + | chr7_2:63555161-63555180 | None:intergenic | 30.0% | |
| TTGTGAATAATACTATGTCC+AGG | - | chr7_2:63555504-63555523 | Msa1068540:intron | 30.0% | |
| TATGCTTAAAAGTTAGTTGC+TGG | + | chr7_2:63555592-63555611 | None:intergenic | 30.0% | |
| GTACCTGAGGATTTAAAAAA+AGG | + | chr7_2:63555763-63555782 | None:intergenic | 30.0% | |
| AATGCTTACTATGCAAAAGT+TGG | - | chr7_2:63555789-63555808 | Msa1068540:CDS | 30.0% | |
| TCATCATCATTTCACTTTGT+AGG | + | chr7_2:63555920-63555939 | None:intergenic | 30.0% | |
| ATCTTCATTGAAGCATACAT+GGG | + | chr7_2:63555997-63556016 | None:intergenic | 30.0% | |
| ! | ATAAGCTTTGGCATCTCATT+AGG | + | chr7_2:63554598-63554617 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | + | chr7_2:63554681-63554700 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | - | chr7_2:63554685-63554704 | Msa1068540:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | + | chr7_2:63554767-63554786 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | + | chr7_2:63554841-63554860 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | - | chr7_2:63554842-63554861 | Msa1068540:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | - | chr7_2:63554867-63554886 | Msa1068540:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | - | chr7_2:63555046-63555065 | Msa1068540:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | + | chr7_2:63555178-63555197 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | + | chr7_2:63555381-63555400 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | + | chr7_2:63555759-63555778 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | - | chr7_2:63555757-63555776 | Msa1068540:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | + | chr7_2:63555826-63555845 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | - | chr7_2:63555827-63555846 | Msa1068540:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | - | chr7_2:63555846-63555865 | Msa1068540:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | - | chr7_2:63555847-63555866 | Msa1068540:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | + | chr7_2:63555857-63555876 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | + | chr7_2:63555891-63555910 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | + | chr7_2:63555907-63555926 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | - | chr7_2:63555957-63555976 | Msa1068540:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | + | chr7_2:63555970-63555989 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | + | chr7_2:63555988-63556007 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | + | chr7_2:63555989-63556008 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | + | chr7_2:63555998-63556017 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | + | chr7_2:63556065-63556084 | None:intergenic | 35.0% | |
| !!! | ATTTTGTACAAGAGTGCTTG+GGG | + | chr7_2:63554542-63554561 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGGCATCTCATT+AGG | + | chr7_2:63554598-63554617 | None:intergenic | 35.0% |
| AAACTGAGATCTTCTGTTGT+AGG | + | chr7_2:63554681-63554700 | None:intergenic | 35.0% | |
| ! | CAGAAGATCTCAGTTTTTCA+AGG | - | chr7_2:63554685-63554704 | Msa1068540:CDS | 35.0% |
| !! | GAAACAAGATGGACTACAAT+TGG | + | chr7_2:63554767-63554786 | None:intergenic | 35.0% |
| ! | TGAACATTGAAGGAGTTGAT+AGG | + | chr7_2:63554841-63554860 | None:intergenic | 35.0% |
| TCAACTCCTTCAATGTTCAT+CGG | - | chr7_2:63554842-63554861 | Msa1068540:CDS | 35.0% | |
| ACTCATTACAAGTGTTATGG+TGG | - | chr7_2:63554867-63554886 | Msa1068540:CDS | 35.0% | |
| TTGTGATGTTGTATCAGTGT+CGG | - | chr7_2:63555046-63555065 | Msa1068540:intron | 35.0% | |
| ! | CGGAAATTCTTTAGAGATCA+AGG | + | chr7_2:63555178-63555197 | None:intergenic | 35.0% |
| GGTAACTAACATGCAACATT+TGG | + | chr7_2:63555381-63555400 | None:intergenic | 35.0% | |
| CTGAGGATTTAAAAAAAGGG+AGG | + | chr7_2:63555759-63555778 | None:intergenic | 35.0% | |
| !!! | CTCCCTTTTTTTAAATCCTC+AGG | - | chr7_2:63555757-63555776 | Msa1068540:intron | 35.0% |
| CTCAAGAAAGTTCATCTCTA+TGG | + | chr7_2:63555826-63555845 | None:intergenic | 35.0% | |
| AGAGATGAACTTTCTTGAGT+TGG | - | chr7_2:63555827-63555846 | Msa1068540:CDS | 35.0% | |
| ! | TTGGACTTCCTATTTGGTTT+AGG | - | chr7_2:63555846-63555865 | Msa1068540:CDS | 35.0% |
| ! | TGGACTTCCTATTTGGTTTA+GGG | - | chr7_2:63555847-63555866 | Msa1068540:CDS | 35.0% |
| AATGGAACCCTAAACCAAAT+AGG | + | chr7_2:63555857-63555876 | None:intergenic | 35.0% | |
| !! | CAATAGGATTGGAAAGTGTT+TGG | + | chr7_2:63555891-63555910 | None:intergenic | 35.0% |
| ACTTTGTAGGTGAACACAAT+AGG | + | chr7_2:63555907-63555926 | None:intergenic | 35.0% | |
| ACAGATTCTTCCTTAGGTTT+AGG | - | chr7_2:63555957-63555976 | Msa1068540:CDS | 35.0% | |
| ! | TAGGGATTTTCCTAAACCTA+AGG | + | chr7_2:63555970-63555989 | None:intergenic | 35.0% |
| GAAGCATACATGGGTATTTA+GGG | + | chr7_2:63555988-63556007 | None:intergenic | 35.0% | |
| TGAAGCATACATGGGTATTT+AGG | + | chr7_2:63555989-63556008 | None:intergenic | 35.0% | |
| CATCTTCATTGAAGCATACA+TGG | + | chr7_2:63555998-63556017 | None:intergenic | 35.0% | |
| TGCATGCATCAAGAAAATGA+AGG | + | chr7_2:63556065-63556084 | None:intergenic | 35.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | + | chr7_2:63554672-63554691 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | + | chr7_2:63554832-63554851 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | + | chr7_2:63554851-63554870 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | - | chr7_2:63554882-63554901 | Msa1068540:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | + | chr7_2:63555075-63555094 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | - | chr7_2:63555508-63555527 | Msa1068540:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | + | chr7_2:63555559-63555578 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | + | chr7_2:63555560-63555579 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | - | chr7_2:63555559-63555578 | Msa1068540:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | + | chr7_2:63555776-63555795 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | - | chr7_2:63555792-63555811 | Msa1068540:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | - | chr7_2:63555840-63555859 | Msa1068540:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | + | chr7_2:63555902-63555921 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | - | chr7_2:63556077-63556096 | Msa1068540:CDS | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | - | chr7_2:63556078-63556097 | Msa1068540:CDS | 40.0% | |
| TCTTCTGTTGTAGGAGTTTC+TGG | + | chr7_2:63554672-63554691 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGATAGGCAAAGA+GGG | + | chr7_2:63554832-63554851 | None:intergenic | 40.0% |
| GAGTAACCGATGAACATTGA+AGG | + | chr7_2:63554851-63554870 | None:intergenic | 40.0% | |
| TATGGTGGCTGCTAAATTCA+TGG | - | chr7_2:63554882-63554901 | Msa1068540:CDS | 40.0% | |
| ATCGTGATATTGCATGTGTC+TGG | + | chr7_2:63555075-63555094 | None:intergenic | 40.0% | |
| GAATAATACTATGTCCAGGC+TGG | - | chr7_2:63555508-63555527 | Msa1068540:intron | 40.0% | |
| GCATGCAATAAGGATCACAT+GGG | + | chr7_2:63555559-63555578 | None:intergenic | 40.0% | |
| TGCATGCAATAAGGATCACA+TGG | + | chr7_2:63555560-63555579 | None:intergenic | 40.0% | |
| ATGTGATCCTTATTGCATGC+AGG | - | chr7_2:63555559-63555578 | Msa1068540:intron | 40.0% | |
| ! | AAGCATTGTTGTAGTACCTG+AGG | + | chr7_2:63555776-63555795 | None:intergenic | 40.0% |
| GCTTACTATGCAAAAGTTGG+AGG | - | chr7_2:63555792-63555811 | Msa1068540:CDS | 40.0% | |
| !! | CTTGAGTTGGACTTCCTATT+TGG | - | chr7_2:63555840-63555859 | Msa1068540:CDS | 40.0% |
| GTAGGTGAACACAATAGGAT+TGG | + | chr7_2:63555902-63555921 | None:intergenic | 40.0% | |
| TGCATGCAATCTAGTTGTAG+AGG | - | chr7_2:63556077-63556096 | Msa1068540:CDS | 40.0% | |
| GCATGCAATCTAGTTGTAGA+GGG | - | chr7_2:63556078-63556097 | Msa1068540:CDS | 40.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | + | chr7_2:63554833-63554852 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | + | chr7_2:63555538-63555557 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | + | chr7_2:63555555-63555574 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | + | chr7_2:63555556-63555575 | None:intergenic | 45.0% | |
| !! | GAAGGAGTTGATAGGCAAAG+AGG | + | chr7_2:63554833-63554852 | None:intergenic | 45.0% |
| !! | GGTGGGTTGTCTACATCTAA+TGG | + | chr7_2:63555538-63555557 | None:intergenic | 45.0% |
| GCAATAAGGATCACATGGGT+GGG | + | chr7_2:63555555-63555574 | None:intergenic | 45.0% | |
| TGCAATAAGGATCACATGGG+TGG | + | chr7_2:63555556-63555575 | None:intergenic | 45.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | + | chr7_2:63554577-63554596 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | + | chr7_2:63555525-63555544 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | + | chr7_2:63555569-63555588 | None:intergenic | 50.0% | |
| GGATTCTCAAGCTCTGCCAT+TGG | + | chr7_2:63554577-63554596 | None:intergenic | 50.0% | |
| CATCTAATGGAAAGCCAGCC+TGG | + | chr7_2:63555525-63555544 | None:intergenic | 50.0% | |
| CATGCTGCCTGCATGCAATA+AGG | + | chr7_2:63555569-63555588 | None:intergenic | 50.0% | |
| GGGCTACATCGCTGTGACAC+CGG | - | chr7_2:63554973-63554992 | Msa1068540:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | - | chr7_2:63554974-63554993 | Msa1068540:intron | 60.0% | |
| GGGCTACATCGCTGTGACAC+CGG | - | chr7_2:63554973-63554992 | Msa1068540:intron | 60.0% | |
| GGCTACATCGCTGTGACACC+GGG | - | chr7_2:63554974-63554993 | Msa1068540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 63554541 | 63556155 | 63554541 | ID=Msa1068540;Name=Msa1068540 |
| chr7_2 | mRNA | 63554541 | 63556155 | 63554541 | ID=Msa1068540-mRNA-1;Parent=Msa1068540;Name=Msa1068540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36|1|1|1|1|1|2|100|203 |
| chr7_2 | exon | 63554541 | 63554917 | 63554541 | ID=Msa1068540-mRNA-1:exon:13175;Parent=Msa1068540-mRNA-1 |
| chr7_2 | exon | 63555785 | 63556155 | 63555785 | ID=Msa1068540-mRNA-1:exon:13174;Parent=Msa1068540-mRNA-1 |
| chr7_2 | five_prime_UTR | 63556120 | 63556155 | 63556120 | ID=Msa1068540-mRNA-1:five_prime_utr;Parent=Msa1068540-mRNA-1 |
| chr7_2 | CDS | 63555785 | 63556119 | 63555785 | ID=Msa1068540-mRNA-1:cds;Parent=Msa1068540-mRNA-1 |
| chr7_2 | CDS | 63554641 | 63554917 | 63554641 | ID=Msa1068540-mRNA-1:cds;Parent=Msa1068540-mRNA-1 |
| chr7_2 | three_prime_UTR | 63554541 | 63554640 | 63554541 | ID=Msa1068540-mRNA-1:three_prime_utr;Parent=Msa1068540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
